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Artificial light at night (ALAN) demonstrated a new ecological factor that influences organisms through a multi-approach. Yet, the impacts of ALAN on understory plants remain largely unknown. We evaluated whether ALAN would affect the leaf mass per area (LMA) of understory plants through a two-year field light experiment in a tropical rubber plantation in south China. We hypothesized that ALAN could impact the understory in two ways: by directly supplementing light to aboveground plant parts (which increases LMA) and indirectly affecting soil nutrient composition by attracting insects (which decreases LMA). We selected two species: Colocasia gigantea, representing shade-tolerant species, and Melastoma candidum, representing light-demanding species. We measured canopy openness, LMA, soil nutrients, and individual distance away from light resources. Our Bayesian linear mixed model showed a negative relationship between LMA and the strength of ALAN, indicating that ALAN may influence LMA more indirectly by enhancing soil nutrient availability rather than directly acting as a light resource. This relationship was significant for Colocasia gigantea but not for Melastoma candidum. These results suggest that ALAN might have complex and species-specific impacts on the understory ecosystem. Our study underscores the need for continued research and informed management of anthropogenic ecosystems.

Artificial light at night (ALAN) demonstrated a new ecological factor that influences organisms through a multi-approach. Yet, the impacts of ALAN on understory plants remain largely unknown. We evaluated whether ALAN would affect the leaf mass per area (LMA) of understory plants through a two-year field light experiment in a tropical rubber plantation in south China. We hypothesized that ALAN could impact the understory in two ways: by directly supplementing light to aboveground plant parts (which increases LMA) and indirectly affecting soil nutrient composition by attracting insects (which decreases LMA). We selected two species: Colocasia gigantea, representing shade-tolerant species, and Melastoma candidum, representing light-demanding species. We measured canopy openness, LMA, soil nutrients, and individual distance away from light resources. Our Bayesian linear mixed model showed a negative relationship between LMA and the strength of ALAN, indicating that ALAN may influence LMA more indirectly by enhancing soil nutrient availability rather than directly acting as a light resource. This relationship was significant for Colocasia gigantea but not for Melastoma candidum. These results suggest that ALAN might have complex and species-specific impacts on the understory ecosystem. Our study underscores the need for continued research and informed management of anthropogenic ecosystems. [ABSTRACT FROM AUTHOR]

M. candidum, an evergreen shrubby flower known for its superior adaptation ability in South China, has gained increased attention in garden applications. However, scant attention has been paid to its flower development and color formation process at the non-coding RNA level. To fill this gap, we conducted a comprehensive analysis based on long non-coding RNA sequencing (lncRNAseq), RNA-seq, small RNA sequencing (sRNA-seq), and widely targeted metabolome detection of three different flower developmental stages of M. candidum. After differentially expressed lncRNAs (DElncRNAs), differentially expressed mRNAs (DEmRNAs), differentially expressed microRNAs (DEmiRNAs), and differentially synthesized metabolites (DSmets) analyses between the different flower developmental stages, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) were conducted to identify some key genes and metabolites in flavonoid, flavone, anthocyanin, carotenoid, and alkaloid-related GO terms and biosynthetic pathways. Three direct-acting models, including antisense-acting, cis-acting, and trans-acting between lncRNAs and mRNAs, were detected to illustrate the direct function of lncRNAs on target genes during flower development and color formation. Based on the competitive endogenous RNA (ceRNA) regulatory theory, we constructed a lncRNA-mediated regulatory network composed of DElncRNAs, DEmiRNAs, DEmRNAs, and DSmets to elucidate the indirect role of lncRNAs in the flower development and color formation of M. candidum. By utilizing correlation analyses between DERNAs and DSmets within the ceRNA regulatory network, alongside verification trials of the ceRNA regulatory mechanism, the study successfully illustrated the significance of lncRNAs in flower development and color formation process. This research provides a foundation for improving and regulating flower color at the lncRNA level in M. candidum, and sheds light on the potential applications of non-coding RNA in studies of flower development. [ABSTRACT FROM AUTHOR]

The MYB gene family is significant in plants, playing a role in numerous plant development processes, including metabolism, hormone signal transduction, cell identity, and biotic and abiotic stresses. Due to the recent availability of the Melastoma candidum genome, this is the first time that the MYB gene family has been identified in this species. This study identified 421 MYB gene members in the M. candidum genome using the HMMER search and BLASTp method. These MYBs were further divided into 10 sub-types, including R2R3, R-R, CPC-like, CCA1-like, TBP-like, R1R2R3, I-box, atypical MYB, MYB-CC, and MYB-like. Domain and conservation analyses revealed that each type of MYB was characterized by a different number and combination of SANTs/myb DNA-binding domains. Collinearity analysis revealed several gene duplication events within the MYB gene family. The Ka to Ks ratio suggested that most of the MYB genes underwent purifying selection during the evolution process. Phylogenetic analysis among three species confirmed our findings and displayed the evolutionary relationship of MYB genes in different species. RNA-seq of three developmental stages of flowers and WGCNA analysis identified McMYB113h, McMYB21b, and McGLK1c as playing a pivotal role during flower development in M. candidum. Finally, we conducted qRT-PCR experiments for 20 flower-development-related MYBs across 9 tissues to illustrate their expression patterns in M. candidum. This study establishes a foundation for exploring MYB gene resources and their potential applications in related industries of M. candidum. [ABSTRACT FROM AUTHOR]

Melastoma, consisting of ~100 species diversified in tropical Asia and Oceania in the past 1-2 million years, represents an excellent example of rapid speciation in flowering plants. Trichomes on hypanthia, twigs and leaves vary markedly among species of this genus and are the most important diagnostic traits for species identification. These traits also play critical roles in contributing to differential adaptation of these species to their own habitats. Here we sequenced the genome of M. candidum, a common, erect-growing species from southern China, with the aim to provide genomic insights into trichome evolution in this genus. We generated a high-quality, chromosomelevel genome assembly of M. candidum, with the genome size of 256.2 Mb and protein-coding gene number of 40,938. The gene families specific to, and significantly expanded in Melastoma are enriched for GO terms related to trichome initiation and differentiation. We provide evidence that Melastoma and its sister genus Osbeckia have undergone two whole genome duplications (WGDs) after the triplication event (g) shared by all core eudicots. Preferential retention of trichome development-related transcription factor genes such as C2H2, bHLH, HD-ZIP, WRKY, and MYB after both WGDs might provide raw materials for trichome evolution and thus contribute to rapid species diversification in Melastoma. Our study provides candidate transcription factor genes related to trichome evolution in Melastoma, which can be used to evolutionary and functional studies of trichome diversification among species of this genus. [ABSTRACT FROM AUTHOR]

It has been confirmed that the plant-specific Teosinte-branched 1/Cycloidea/Proliferating (TCP) gene family plays a pivotal role during plant growth and development. M. candidum is a native ornamental species and has a wide range of pharmacodynamic effects. However, there is still a lack of research on TCP's role in controlling M. candidum's development, abiotic stress responses and hormone metabolism. A comprehensive description of the TCP gene family in M. candidum is urgently needed. In this study, we used the HMMER search method in conjunction with the BLASTp method to identify the members of the TCP gene family, and a total of 35 TCP genes were identified. A domain analysis further confirmed that all 35 TCPs contained a TCP superfamily, a characteristic involved in dimerization and DNA binding that can be found in most genes from this gene family, suggesting that our identification was effective. As a result of the domain conservation analysis, the 35 TCP genes could be classified into two classes, TCP-P and TCP-C, based on the conservative regions of 55 and 59 amino acids, respectively. Gene-duplication analysis revealed that most TCP genes were present in duplication events that eventually led to TCP gene expansion in M. candidum. All the detected gene pairs had a Ka/Ks value of less than one, suggesting that purification selection is the most important factor that influences the evolution of TCP genes. Phylogenetic analysis of three species displayed the evolutionary relationship of TCP genes across different species and further confirmed our results. The real-time quantitative PCR (qRT-PCR) results showed that McTCP2a, McTCP7a, McTCP10, McTCP11, McTCP12a, McTCP13, McTCP16, McTCP17, McTCP18, McTCP20 and McTCP21 may be involved in leaf development; McTCP4a, McTCP1, McTCP14, McTCP17, McTCP18, McTCP20, McTCP22 and McTCP24 may be involved in flower development; and McTCP2a, McTCP3, McTCP5a, McTCP6, McTCP7a, McTCP9, McTCP11, McTCP14 and McTCP16 may be involved in seed development. Our results dissect the TCP gene family across the genome of M. candidum and provide valuable information for exploring TCP genes to promote molecular breeding and property improvement of M. candidum in the future. [ABSTRACT FROM AUTHOR]

The MYB gene family is significant in plants, playing a role in numerous plant development processes, including metabolism, hormone signal transduction, cell identity, and biotic and abiotic stresses. Due to the recent availability of the Melastoma candidum genome, this is the first time that the MYB gene family has been identified in this species. This study identified 421 MYB gene members in the M. candidum genome using the HMMER search and BLASTp method. These MYBs were further divided into 10 sub-types, including R2R3, R-R, CPC-like, CCA1-like, TBP-like, R1R2R3, I-box, atypical MYB, MYB-CC, and MYB-like. Domain and conservation analyses revealed that each type of MYB was characterized by a different number and combination of SANTs/myb DNA-binding domains. Collinearity analysis revealed several gene duplication events within the MYB gene family. The Ka to Ks ratio suggested that most of the MYB genes underwent purifying selection during the evolution process. Phylogenetic analysis among three species confirmed our findings and displayed the evolutionary relationship of MYB genes in different species. RNA-seq of three developmental stages of flowers and WGCNA analysis identified McMYB113h, McMYB21b, and McGLK1c as playing a pivotal role during flower development in M. candidum. Finally, we conducted qRT-PCR experiments for 20 flower-development-related MYBs across 9 tissues to illustrate their expression patterns in M. candidum. This study establishes a foundation for exploring MYB gene resources and their potential applications in related industries of M. candidum.

It has been confirmed that the plant-specific Teosinte-branched 1/Cycloidea/Proliferating (TCP) gene family plays a pivotal role during plant growth and development. M. candidum is a native ornamental species and has a wide range of pharmacodynamic effects. However, there is still a lack of research on TCP’s role in controlling M. candidum’s development, abiotic stress responses and hormone metabolism. A comprehensive description of the TCP gene family in M. candidum is urgently needed. In this study, we used the HMMER search method in conjunction with the BLASTp method to identify the members of the TCP gene family, and a total of 35 TCP genes were identified. A domain analysis further confirmed that all 35 TCPs contained a TCP superfamily, a characteristic involved in dimerization and DNA binding that can be found in most genes from this gene family, suggesting that our identification was effective. As a result of the domain conservation analysis, the 35 TCP genes could be classified into two classes, TCP-P and TCP-C, based on the conservative regions of 55 and 59 amino acids, respectively. Gene-duplication analysis revealed that most TCP genes were present in duplication events that eventually led to TCP gene expansion in M. candidum. All the detected gene pairs had a Ka/Ks value of less than one, suggesting that purification selection is the most important factor that influences the evolution of TCP genes. Phylogenetic analysis of three species displayed the evolutionary relationship of TCP genes across different species and further confirmed our results. The real-time quantitative PCR (qRT-PCR) results showed that McTCP2a, McTCP7a, McTCP10, McTCP11, McTCP12a, McTCP13, McTCP16, McTCP17, McTCP18, McTCP20 and McTCP21 may be involved in leaf development; McTCP4a, McTCP1, McTCP14, McTCP17, McTCP18, McTCP20, McTCP22 and McTCP24 may be involved in flower development; and McTCP2a, McTCP3, McTCP5a, McTCP6, McTCP7a, McTCP9, McTCP11, McTCP14 and McTCP16 may be involved in seed development. Our results dissect the TCP gene family across the genome of M. candidum and provide valuable information for exploring TCP genes to promote molecular breeding and property improvement of M. candidum in the future.

• CircRNAs are detected in developing flowers of melastoma candidum. • CircRNAs may originate from the alternative splicing process of genes. • CircRNAs sponge miRNAs to regulate genes related to flower development. • CircRNAs regulate compounds synthesis via ceRNA regulatory mechanism. Melastoma candidum D. Don is widely distributed in South China. However, its application in the garden industry is not ideal due to its sole flower color; thus, its color needs urgent improvement. In this study, we conducted high throughput transcriptome sequencing for circular RNA (circRNA), mRNA, small RNA (sRNA), and widely targeted metabolome in flowers at three developmental stages. RNA expression and metabolite abundance analyses identified differentially expressed circRNAs (DEcircRNAs), mRNAs (DEmRNAs), miRNAs (DEmiRNAs), and differentially synthesized metabolites (DSmets). Alternative variants of genes were given statistics and the reason for their occurrence was analyzed. GO enrichment and KEGG analyses were conducted on the source gene of DEcircRNAs and KEGG analyses on DSmets. Key genes and metabolites were identified in flavonoid, flavone, anthocyanin, carotenoid, and alkaloid biosynthetic pathways. Based on the above analyses, we built a circRNA-mediated ceRNA regulatory network. Nine circRNA-mediated ceRNA regulatory routines were obtained. Within the ceRNA regulatory network, circRNAs and mRNAs displayed positive correlations, both of which exhibit negative correlations with miRNAs, indicating their important roles during flower development and color formation of M. candidum. Amongst, circ_000434-miR5207- McF3H could regulate the biosynthesis of Dihydroquercetin, Dihydromyricetin, and Pinobanksin; circ_000302-miR319–5p- McHST and circ_00012 -miR826- McTAT could regulate the biosynthesis of p -Counmaryl shikimic acid. Our research explored the role of circRNAs in flower development and the color formation process and provided a theoretical foundation for flower color improvement in M. candidum. [ABSTRACT FROM AUTHOR]

Understory shrubs are an important component of forest ecosystems and drive ecosystem processes, such as ecosystem carbon cycling. However, shrub biomass carbon stocks have rarely been reported, which limits our understanding of ecosystem C stock and cycling. In this study, we evaluated carbon accumulation of shrub species using allometric equations based on height and basal diameter in six subtropical plantations at the age of 1, 3, 4 and 6 years. The results showed that plantation type did not significantly affect the total biomass of shrubs, but it significantly affected the biomass of Rhodomyrtus tomentosa, Ilex asprella, Clerodendrum fortunatum and Baeckea frutescens. The biomass of dominant shrub species R. tomentosa, I. asprella, Gardenia jasminoides and Melastoma candidum increased with stand age, while the biomass of C. fortunatum and B. frutescens decreased. The inconsistent biomass-time patterns of different shrub species may be the primary reason for the altered total shrub biomass in each plantation. Consequently, we proposed that R. tomentosa, I. asprella, G. jasminoides and M. candidum could be preferable for understory carbon accumulation and should be maintained or planted because of their important functions in carbon accumulation and high economic values in the young plantations of southern subtropical China. [ABSTRACT FROM AUTHOR]

M. candidum , an evergreen shrubby flower known for its superior adaptation ability in South China, has gained increased attention in garden applications. However, scant attention has been paid to its flower development and color formation process at the non-coding RNA level. To fill this gap, we conducted a comprehensive analysis based on long non-coding RNA sequencing (lncRNA-seq), RNA-seq, small RNA sequencing (sRNA-seq), and widely targeted metabolome detection of three different flower developmental stages of M. candidum . After differentially expressed lncRNAs (DElncRNAs), differentially expressed mRNAs (DEmRNAs), differentially expressed microRNAs (DEmiRNAs), and differentially synthesized metabolites (DSmets) analyses between the different flower developmental stages, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) were conducted to identify some key genes and metabolites in flavonoid, flavone, anthocyanin, carotenoid, and alkaloid-related GO terms and biosynthetic pathways. Three direct-acting models, including antisense-acting, cis-acting, and trans-acting between lncRNAs and mRNAs, were detected to illustrate the direct function of lncRNAs on target genes during flower development and color formation. Based on the competitive endogenous RNA (ceRNA) regulatory theory, we constructed a lncRNA-mediated regulatory network composed of DElncRNAs, DEmiRNAs, DEmRNAs, and DSmets to elucidate the indirect role of lncRNAs in the flower development and color formation of M. candidum . By utilizing correlation analyses between DERNAs and DSmets within the ceRNA regulatory network, alongside verification trials of the ceRNA regulatory mechanism, the study successfully illustrated the significance of lncRNAs in flower development and color formation process. This research provides a foundation for improving and regulating flower color at the lncRNA level in M. candidum , and sheds light on the potential applications of non-coding RNA in studies of flower development., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Li, Wang, Liu, Tong, Dai, Lu, Yu, Dai and Ruan.)

Melastoma , consisting of ~100 species diversified in tropical Asia and Oceania in the past 1-2 million years, represents an excellent example of rapid speciation in flowering plants. Trichomes on hypanthia, twigs and leaves vary markedly among species of this genus and are the most important diagnostic traits for species identification. These traits also play critical roles in contributing to differential adaptation of these species to their own habitats. Here we sequenced the genome of M. candidum , a common, erect-growing species from southern China, with the aim to provide genomic insights into trichome evolution in this genus. We generated a high-quality, chromosome-level genome assembly of M. candidum , with the genome size of 256.2 Mb and protein-coding gene number of 40,938. The gene families specific to, and significantly expanded in Melastoma are enriched for GO terms related to trichome initiation and differentiation. We provide evidence that Melastoma and its sister genus Osbeckia have undergone two whole genome duplications (WGDs) after the triplication event (γ) shared by all core eudicots. Preferential retention of trichome development-related transcription factor genes such as C2H2, bHLH, HD-ZIP, WRKY, and MYB after both WGDs might provide raw materials for trichome evolution and thus contribute to rapid species diversification in Melastoma . Our study provides candidate transcription factor genes related to trichome evolution in Melastoma , which can be used to evolutionary and functional studies of trichome diversification among species of this genus., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2023 Zhong, Wu, Sun, Zou, Liu, Dai and Zhou.)

In this paper, we investigated the antibacterial mechanism and potential therapeutic targets of three antibacterial medicinal plants. Upon treatment with the plant extracts, bacterial proteins were extracted and resolved using denaturing gel electrophoresis. Differentially-expressed bacterial proteins were excised from the gels and subjected to sequence analysis by MALDI TOF–TOF mass spectrometry. From our study, seven differentially expressed bacterial proteins (triacylglycerol lipase, N-acetylmuramoyl- l -alanine amidase, flagellin, outer membrane protein A, stringent starvation protein A, 30S ribosomal protein s1 and 60 kDa chaperonin) were identified. Additionally, scanning electron microscope study indicated morphological damages induced on bacterial cell surfaces. To the best of our knowledge, this represents the first time these bacterial proteins are being reported, following treatments with the antibacterial plant extracts. Further studies in this direction could lead to the detailed understanding of their inhibition mechanism and discovery of target-specific antibacterial agents. [ABSTRACT FROM AUTHOR]

Purpose: To identify potential antibacterial protein targets following exposure to Melastoma candidum extract. electrophoresis and MALDI TOF-TOF MS protein sequencing were used to identify differential-expressed bacterial proteins. 96-well microplate method was used to determine the minimum inhibitory concentration (MIC) values. Thin layer chromatography (TLC) bio-autobiography and gas-chromatography-mass spectrometry (GC-MS) were performed to determine the phytochemicals in the active fraction. Results: Five differentially expressed bacterial proteins (four from Escherichia coli and one from Staphylococcus aureus), were identified via proteomic approach. Among the bacterial proteins identified, glutamate decarboxylase, elongation factor-Tu and a-hemolysin are especially noteworthy, as they are implicated in critical bacterial pathways pertaining to survival in acidic environment, protein translation and virulence, respectively. Additionally, we tested and reported the minimum inhibition concentrations of different M. candidum fractions and gas chromatography-mass spectrometry GC-MS analysis of the active fraction. Conclusion: Glutamate decarboxylase, elongation factor-Tu and a-hemolysin represent potential antibacterial targets. [ABSTRACT FROM AUTHOR]

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