11,053 results on '"Mclain, A"'
Search Results
2. Abundant ammonia and nitrogen-rich soluble organic matter in samples from asteroid (101955) Bennu
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Glavin, Daniel P., Dworkin, Jason P., Alexander, Conel M. O’D., Aponte, José C., Baczynski, Allison A., Barnes, Jessica J., Bechtel, Hans A., Berger, Eve L., Burton, Aaron S., Caselli, Paola, Chung, Angela H., Clemett, Simon J., Cody, George D., Dominguez, Gerardo, Elsila, Jamie E., Farnsworth, Kendra K., Foustoukos, Dionysis I., Freeman, Katherine H., Furukawa, Yoshihiro, Gainsforth, Zack, Graham, Heather V., Grassi, Tommaso, Giuliano, Barbara Michela, Hamilton, Victoria E., Haenecour, Pierre, Heck, Philipp R., Hofmann, Amy E., House, Christopher H., Huang, Yongsong, Kaplan, Hannah H., Keller, Lindsay P., Kim, Bumsoo, Koga, Toshiki, Liss, Michael, McLain, Hannah L., Marcus, Matthew A., Matney, Mila, McCoy, Timothy J., McIntosh, Ophélie M., Mojarro, Angel, Naraoka, Hiroshi, Nguyen, Ann N., Nuevo, Michel, Nuth, III, Joseph A., Oba, Yasuhiro, Parker, Eric T., Peretyazhko, Tanya S., Sandford, Scott A., Santos, Ewerton, Schmitt-Kopplin, Philippe, Seguin, Frederic, Simkus, Danielle N., Shahid, Anique, Takano, Yoshinori, Thomas-Keprta, Kathie L., Tripathi, Havishk, Weiss, Gabriella, Zheng, Yuke, Lunning, Nicole G., Righter, Kevin, Connolly, Jr., Harold C., and Lauretta, Dante S.
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- 2025
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3. Identifying and Responding to Intimate Partner Violence in Australian Refugee Settlement Services
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Spangaro, J., Walsh, J., Spence, N., Man, N., Hegarty, K., Koziol-McLain, J., Cameron, J., Toole-Anstey, C., Zwi, A., McMahon, T., and Perry, A.
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- 2024
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4. County-Level Prevalence Estimates of Autism Spectrum Disorder in Children in the United States
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Jessica Bradshaw, Jan M. Eberth, Anja Zgodic, Alexis Federico, Kate Flory, and Alexander C. McLain
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Prevalence estimates of autism spectrum disorder (ASD) point to geographic and socioeconomic disparities in identification and diagnosis. Estimating national prevalence rates can limit understanding of local disparities, especially in rural areas where disproportionately higher rates of poverty and decreased healthcare access exist. Using a small area estimation approach from the 2016-2018 National Survey of Children's Health (N = 70,913), we identified geographic differences in ASD prevalence, ranging from 4.38% in the Mid-Atlantic to 2.71% in the West South-Central region. Cluster analyses revealed "hot spots" in parts of the Southeast, East coast, and Northeast. This geographic clustering of prevalence estimates suggests that local or state-level differences in policies, service accessibility, and sociodemographics may play an important role in identification and diagnosis of ASD.County-Level Prevalence Estimates of Autism Spectrum Disorder in Children in the United States.
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- 2024
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5. Comparison of the characteristics of the population eligible for lung cancer screening under 2013 and population newly eligible under 2021 US Preventive Services Task Force recommendations
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Yell, Nicholas, Eberth, Jan M., Alberg, Anthony J., Hung, Peiyin, Schootman, Mario, McLain, Alexander C., and Munden, Reginald F.
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- 2024
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6. Online Calibration for Networked Radar Tracking of UAS
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Graff, Douglas, Anderson, Brady, Buck, David, Peterson, Cameron K., McLain, Tim W., and Warnick, Karl F.
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- 2024
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7. Medical Alert Cards for patients with an anorectal malformation: a useful tool to increase awareness
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Bokova, Elizaveta, Elhalaby, Ismael, Prasade, Ninad, Martin-McLain, Margaret, Lewis, Wendy E., Feira, Christine N., Lim, Irene Isabel P., and Rentea, Rebecca M.
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- 2024
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8. “Build back the confidence”: qualitative exploration of community experiences with polio vaccination in the Covid-19 context in Cameroon and Ethiopia
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Lorenzetti, Lara, Alam, Chaudhary Mohd Parvez, Namey, Emily, Monj, Claude, Tsegaye, Ademe, Ateeq, Nasir, Massom, Douglas Mbang, McLain, Grace, Tsanga, Soterine, and Mcintosh, Ross
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- 2024
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9. “Moving beyond silos”: focus groups to understand the impact of an adapted project ECHO model for a multidisciplinary statewide forum of substance use disorder care leaders
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Ramalingam, NithyaPriya, Rieke, Eowyn, McDonnell, Maggie McLain, Myers, Emily, and Hoover, Dan
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- 2024
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10. Differences in elementary-age children’s accelerometer - measured physical activity between school and summer: three-year findings from the What’s UP (Undermining Prevention) with summer observational cohort study
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Beets, Michael W., Burkart, Sarah, Pfledderer, Christopher, Adams, Elizabeth, Weaver, R. Glenn, Armstrong, Bridget, Brazendale, Keith, Zhu, Xuanxuan, McLain, Alexander, Turner-McGrievy, Brie, Pate, Russell, Kaczynski, Andrew, Fairchild, Amanda, Saelens, Brian, and Parker, Hannah
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- 2024
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11. ‘Atawhai’: a primary care provider-led response to family violence in Aotearoa New Zealand
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Gear, Claire, Koziol-McLain, Jane, Eppel, Elizabeth, Rolleston, Anna, Timutimu, Ngareta, Ahomiro, Hori, Kelly, Eunice, Healy, Clare, and Isham, Claire
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- 2024
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12. Active Learning Methodologies in a High Stakes Graduate Nursing Program
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McLain, Nina, Collins, Mary Jane, and Baskin, LaWanda
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Active learning with student engagement has been demonstrated to improve knowledge retention and improve learning in graduate education. Nurse anesthesia education has traditionally been taught using lecture with slide presentations without considering student centered learning. Much attention has been given to active learning strategies to promote student engagement and content retention, yet little information exists regarding student preferences for in higher level graduate nursing courses. This mixed-methods study aimed to examine student learning preferences for seven different instructional methodologies; traditional lecture, a problem-based learning exercise, reading with workbook assignments, development of cognitive aids, game-based learning, practice questions, and a case study, as well as to which were best to learn by. Students prefer game-based learning, practice questions, and assigned reading with workbooks over lecture and other active learning exercises and reported game-based learning and workbooks from assigned readings as easiest to methods by which to learn.
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- 2023
13. Design and Technology Educators' Experiences of Competence, Relatedness and Autonomy with Educational Research
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Matt McLain, Daniela Schillaci-Rowland, Kay Stables, and Alison Hardy
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This article reports on the results of a survey of Design and Technology educators, predominantly based in England that sought evidence of the extent to which the educators engaged with educational research more generally and also specifically within Design and Technology Education. The survey was sponsored by the professional Association of Design and Technology Education and was undertaken by its Design and Technology Research Steering Group. The survey collected demographic data on the roles and responsibilities of the survey respondents, the types and levels of education where they worked and length of experience in Design and Technology education. Questions explored the types of research of interest, confidence levels in accessing, using and undertaking research, the nature of support for engaging research that educators would welcome, how research was currently accessed, what the challenges and barriers might be and what would motivate educators to become more engaged with research. This article resorts on analysis of the data, drawing on Self Determination Theory and specifically concepts of competence, relatedness and autonomy. Findings indicated that respondents had a great deal of interest in principle, but that there were considerable barriers to engaging with research which impacted on competence, relatedness and autonomy. The insights provided will now be used as the basis for developing support for Design and Technology practitioners to engage with research at a variety of levels.
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- 2023
14. Sparse high-dimensional linear mixed modeling with a partitioned empirical Bayes ECM algorithm
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Zgodic, Anja, Bai, Ray, Zhang, Jiajia, Olejua, Peter, and McLain, Alexander C.
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Statistics - Methodology ,Statistics - Computation ,Statistics - Machine Learning - Abstract
High-dimensional longitudinal data is increasingly used in a wide range of scientific studies. To properly account for dependence between longitudinal observations, statistical methods for high-dimensional linear mixed models (LMMs) have been developed. However, few packages implementing these high-dimensional LMMs are available in the statistical software R. Additionally, some packages suffer from scalability issues. This work presents an efficient and accurate Bayesian framework for high-dimensional LMMs. We use empirical Bayes estimators of hyperparameters for increased flexibility and an Expectation-Conditional-Minimization (ECM) algorithm for computationally efficient maximum a posteriori probability (MAP) estimation of parameters. The novelty of the approach lies in its partitioning and parameter expansion as well as its fast and scalable computation. We illustrate Linear Mixed Modeling with PaRtitiOned empirical Bayes ECM (LMM-PROBE) in simulation studies evaluating fixed and random effects estimation along with computation time. A real-world example is provided using data from a study of lupus in children, where we identify genes and clinical factors associated with a new lupus biomarker and predict the biomarker over time. Supplementary materials are available online.
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- 2023
15. Quantifying predictive uncertainty of aphasia severity in stroke patients with sparse heteroscedastic Bayesian high-dimensional regression
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Zgodic, Anja, Bai, Ray, Zhang, Jiajia, Wang, Yuan, Rorden, Chris, and McLain, Alexander
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Statistics - Methodology ,Statistics - Machine Learning - Abstract
Sparse linear regression methods for high-dimensional data commonly assume that residuals have constant variance, which can be violated in practice. For example, Aphasia Quotient (AQ) is a critical measure of language impairment and informs treatment decisions, but it is challenging to measure in stroke patients. It is of interest to use high-resolution T2 neuroimages of brain damage to predict AQ. However, sparse regression models show marked evidence of heteroscedastic error even after transformations are applied. This violation of the homoscedasticity assumption can lead to bias in estimated coefficients, prediction intervals (PI) with improper length, and increased type I errors. Bayesian heteroscedastic linear regression models relax the homoscedastic error assumption but can enforce restrictive prior assumptions on parameters, and many are computationally infeasible in the high-dimensional setting. This paper proposes estimating high-dimensional heteroscedastic linear regression models using a heteroscedastic partitioned empirical Bayes Expectation Conditional Maximization (H-PROBE) algorithm. H-PROBE is a computationally efficient maximum a posteriori estimation approach that requires minimal prior assumptions and can incorporate covariates hypothesized to impact heterogeneity. We apply this method by using high-dimensional neuroimages to predict and provide PIs for AQ that accurately quantify predictive uncertainty. Our analysis demonstrates that H-PROBE can provide narrower PI widths than standard methods without sacrificing coverage. Narrower PIs are clinically important for determining the risk of moderate to severe aphasia. Additionally, through extensive simulation studies, we exhibit that H-PROBE results in superior prediction, variable selection, and predictive inference compared to alternative methods.
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- 2023
16. Mitigating risks and maximizing sustainability of treated wastewater reuse for irrigation.
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Klapp, Iftach, Korach-Rechtman, Hila, Kurtzman, Daniel, Levy, Guy, Maffettone, Roberta, Malato, Sixto, Manaia, Célia, Manoli, Kyriakos, Moshe, Orah, Rimelman, Andrew, Rizzo, Luigi, Sedlak, David, Shnit-Orland, Maya, Shtull-Trauring, Eliav, Tarchitzky, Jorge, Welch-White, Venus, Williams, Clinton, McLain, Jean, Cytryn, Eddie, Yalin, David, Craddock, Hillary, Assouline, Shmuel, Ben Mordechay, Evyatar, Ben-Gal, Alon, Bernstein, Nirit, Chaudhry, Rabia, Chefetz, Benny, Fatta-Kassinos, Despo, Gawlik, Bernd, Hamilton, Kerry, Khalifa, Leron, and Kisekka, Isaya
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Agronomic and environmental risks ,Contaminants of emerging concern ,Policy and outreach ,Treated wastewater irrigation ,Wastewater treatment processes - Abstract
Scarcity of freshwater for agriculture has led to increased utilization of treated wastewater (TWW), establishing it as a significant and reliable source of irrigation water. However, years of research indicate that if not managed adequately, TWW may deleteriously affect soil functioning and plant productivity, and pose a hazard to human and environmental health. This review leverages the experience of researchers, stakeholders, and policymakers from Israel, the United-States, and Europe to present a holistic, multidisciplinary perspective on maximizing the benefits from municipal TWW use for irrigation. We specifically draw on the extensive knowledge gained in Israel, a world leader in agricultural TWW implementation. The first two sections of the work set the foundation for understanding current challenges involved with the use of TWW, detailing known and emerging agronomic and environmental issues (such as salinity and phytotoxicity) and public health risks (such as contaminants of emerging concern and pathogens). The work then presents solutions to address these challenges, including technological and agronomic management-based solutions as well as source control policies. The concluding section presents suggestions for the path forward, emphasizing the importance of improving links between research and policy, and better outreach to the public and agricultural practitioners. We use this platform as a call for action, to form a global harmonized data system that will centralize scientific findings on agronomic, environmental and public health effects of TWW irrigation. Insights from such global collaboration will help to mitigate risks, and facilitate more sustainable use of TWW for food production in the future.
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- 2023
17. Gradient boosting: A computationally efficient alternative to Markov chain Monte Carlo sampling for fitting large Bayesian spatio-temporal binomial regression models
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Rongjie Huang, Christopher McMahan, Brian Herrin, Alexander McLain, Bo Cai, and Stella Self
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Infectious and parasitic diseases ,RC109-216 - Abstract
Disease forecasting and surveillance often involve fitting models to a tremendous volume of historical testing data collected over space and time. Bayesian spatio-temporal regression models fit with Markov chain Monte Carlo (MCMC) methods are commonly used for such data. When the spatio-temporal support of the model is large, implementing an MCMC algorithm becomes a significant computational burden. This research proposes a computationally efficient gradient boosting algorithm for fitting a Bayesian spatio-temporal mixed effects binomial regression model. We demonstrate our method on a disease forecasting model and compare it to a computationally optimized MCMC approach. Both methods are used to produce monthly forecasts for Lyme disease, anaplasmosis, ehrlichiosis, and heartworm disease in domestic dogs for the contiguous United States. The data have a spatial support of 3108 counties and a temporal support of 108–138 months with 71–135 million test results. The proposed estimation approach is several orders of magnitude faster than the optimized MCMC algorithm, with a similar mean absolute prediction error.
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- 2025
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18. Social support and help-seeking worldwide
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Szkody, Erica, Spence, Anjolee, Özdoğru, Asil, Tushir, Bhawna, Chang, Fennie, AKKAŞ, Handan, Sotomayor, Ian, Pavlova, Iuliia, Petrovic, Ivana, Norvilitis, Jill, Pena-Shaff, Judith, Maney, Julia, Arrow, Kaitlyn, Rodriguez, Laura, Moussa-Rogers, Mary, McTighe, Michael, Ogba, Kalu T. U., Yeung, Stephanie Ka Wai Au, Stoppa, Tara, Yang, Yuanyuan, Gosnell, Courtney L., Jérémie-Brink, Gihane, Van Nostrand, Joshua J., Arriaga, Patrícia, Martin, Amy, Maksimovic, Ana, Ursu, Andreea, Karakulak, Arzu, Fitapelli, Brianna, Ashdown, Brien K., Sen, Celia K. Naivar, Chartier, Chris, Shane-Simpson, Christina, Redker, Christopher M., McKinney, Cliff, Baro, Danisha, Manrique-Millones, Denisse, Reis, Eduardo Silva, Adamopoulou, Eirini, Volkan, Eliz, Tair, Ergyul, Trujillo, Ethan, Kocalar, Halil Emre, Blocker, Heidi, Malik, Hinza, Orta, İrem Metin, Santos, Jay Claus, Grahe, Jon, Cuccolo, Kelly, Wignall, Liam, McLain, Malorie, Kosic, Marianna, Aita, Moet, Nash, Monique, Miracle, Ogba Oluchi, Christiano, Olivia, Dimitrova, Radosveta, Varma, Rahul, Mann, Rebecca, Dhakal, Sandesh, Estrada-Villalta, Sara, Haden, Sara, Hamilton, Sarah, Camgöz, Selin Metin, Aljuberi, Shams, Chin, Stephanie, Kohn, Steven, Verma, Sunil K., Fletcher, Tifani, Singh, Tushar, Sanders, Abigail, Collado, Adryana, Adusei, Akua, Itani, Alaa, Kaser, Amanda, Wolfe, Amber, Stout, Amy, Akhavan, Anahita, Kirton, Angelique, Çeçen-Eroğul, Ayşe Rezan, Bilir, Bilge, Dupiton, Camille, Lovett, Caroline, Orsini, Chloe, Kpodo, Christney, Aceto, Christopher, Redden, Clare, NyKanen, Danielle, Yildiz, Deniz, Lutringer, Emily, Sevinç, Ender, Baranski, Erica, Khan, Fahd, Jia, Fanli, Cramariuc, Gabriel, Zhang, Guolin, Resulbegoviq, Hakile, Maree, Haneen, Kaur, Harleen, Nelson, Jessie, Espinoza, Jimena Santa Cruz, Hubbard, JoAnna, Edlund, John, Protzko, John, Hoang, Jolie, Stork, Jordan, Vasu, Jordan, Salazar, Jose Verdis, Myhers, Karyssa, Hayward, Kaylynn, Lu, Kevin, Beardmore, Leisha, Levkiv, Liliia, Godoy, Linda Katheryn Hernandez, Paulett, Liseth, Gonzalez, María Fernanda Bonilla, Kalantzis, Maria, Rodrigues, Mariana, Álvarez, Marinés Mejía, Ott, Marissa, Zlokovich, Martha, Brosnan, Mary Kate, Mazzaferro, Mateus, Yetkin, Melis, Johnson, Mikayla, Vukelic, Milica, Clark, Mitchell, AlMalik, Mohammad, Fedavi, Neda, Means-Simonsen, Noah, Cabrera, Onassis, Kovacevic, Panta, Zhang, Qingyi, Rushing, Rachel, Varakis, Rafail, Richardson, Randall, Koch, Sara, Lewis, Savannah, Barrera, Scott, Zheng, Sifan, Liu, Siyu, Papka, Sophia, Das, Sreeja, Ghimire, Srijana, Verma, Tanya, Hillman, Taylor, Ozkusen, Ugur C., Zhang, Xinyi (Spencer), Gu, Yiwen, Redd, Bryce, and Cascalheira, Cory J.
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- 2024
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19. In-situ Optimized Substrate Witness Plates: Ground Truth for Key Processes on the Moon and Other Planets
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Saxena, Prabal, Morrissey, Liam S., Killen, Rosemary M., McLain, Jason L., Yeo, Li Hsia, Curran, Natalie M., Abraham, Nithin S., Graham, Heather V., Tucker, Orenthal J., Sarantos, Menelaos, Regberg, Aaron B., Pugel, Diane E., Needham, Andrew W., Hasegawa, Mark, and Wong, Alfred J.
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
Future exploration efforts of the Moon, Mars and other bodies are poised to focus heavily on persistent and sustainable survey and research efforts, especially given the recent interest in a long-term sustainable human presence at the Moon. Key to these efforts is understanding a number of important processes on the lunar surface for both scientific and operational purposes. We discuss the potential value of in-situ artificial substrate witness plates, powerful tools that can supplement familiar remote sensing and sample acquisition techniques and provide a sustainable way of monitoring processes in key locations on planetary surfaces while maintaining a low environmental footprint. These tools, which we call Biscuits, can use customized materials as wide ranging as zircon-based spray coatings to metals potentially usable for surface structures, to target specific processes/questions as part of a small, passive witness plate that can be flexibly placed with respect to location and total time duration. We examine and discuss unique case studies to show how processes such as water presence/transport, presence and contamination of biologically relevant molecules, solar activity related effects, and other processes can be measured using Biscuits. Biscuits can yield key location sensitive, time integrated measurements on these processes to inform scientific understanding of the Moon and enable operational goals in lunar exploration. While we specifically demonstrate this on a simulated traverse and for selected examples, we stress all groups interested in planetary surfaces should consider these adaptable, low footprint and highly informative tools for future exploration., Comment: Accepted to Earth and Space Science, Will be updated upon publication
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- 2023
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20. False Discovery Rate Control for Lesion-Symptom Mapping with Heterogeneous data via Weighted P-values
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Zheng, Siyu, McLain, Alexander C., Habiger, Joshua, Rorden, Christopher, and Fridriksson, Julius
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Statistics - Applications ,Statistics - Methodology ,62J15 - Abstract
Lesion-symptom mapping studies provide insight into what areas of the brain are involved in different aspects of cognition. This is commonly done via behavioral testing in patients with a naturally occurring brain injury or lesions (e.g., strokes or brain tumors). This results in high-dimensional observational data where lesion status (present/absent) is non-uniformly distributed with some voxels having lesions in very few (or no) subjects. In this situation, mass univariate hypothesis tests have severe power heterogeneity where many tests are known a priori to have little to no power. Recent advancements in multiple testing methodologies allow researchers to weigh hypotheses according to side-information (e.g., information on power heterogeneity). In this paper, we propose the use of p-value weighting for voxel-based lesion-symptom mapping (VLSM) studies. The weights are created using the distribution of lesion status and spatial information to estimate different non-null prior probabilities for each hypothesis test through some common approaches. We provide a monotone minimum weight criterion which requires minimum a priori power information. Our methods are demonstrated on dependent simulated data and an aphasia study investigating which regions of the brain are associated with the severity of language impairment among stroke survivors. The results demonstrate that the proposed methods have robust error control and can increase power. Further, we showcase how weights can be used to identify regions that are inconclusive due to lack of power.
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- 2023
21. Group-$k$ consistent measurement set maximization via maximum clique over k-Uniform hypergraphs for robust multi-robot map merging
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Forsgren, Brendon, Vasudevan, Ram, Kaess, Michael, McLain, Timothy W., and Mangelson, Joshua G.
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Computer Science - Robotics ,Electrical Engineering and Systems Science - Systems and Control - Abstract
This paper unifies the theory of consistent-set maximization for robust outlier detection in a simultaneous localization and mapping framework. We first describe the notion of pairwise consistency before discussing how a consistency graph can be formed by evaluating pairs of measurements for consistency. Finding the largest set of consistent measurements is transformed into an instance of the maximum clique problem and can be solved relatively quickly using existing maximum-clique solvers. We then generalize our algorithm to check consistency on a group-$k$ basis by using a generalized notion of consistency and using generalized graphs. We also present modified maximum clique algorithms that function on generalized graphs to find the set of measurements that is internally group-$k$ consistent. We address the exponential nature of group-$k$ consistency and present methods that can substantially decrease the number of necessary checks performed when evaluating consistency. We extend our prior work to multi-agent systems in both simulation and hardware and provide a comparison with other state-of-the-art methods., Comment: arXiv admin note: text overlap with arXiv:2209.02658
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- 2023
22. A Program Evaluation Case Study on the Impact of Standards-Based Grading in a North Carolina School District
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Ashley McLain Westmoreland
- Abstract
The purpose of this study was to conduct a program evaluation case study on the impact of standards-based grading in a North Carolina school district. The implementation procedures and end products of grading reform were assessed using the CIPP model. Data from teacher questionnaires, principal implementation checklists, interviews, and end-of-grade (EOG) test results were used in this mixed methods study. The program evaluation examined the implementation's advantages and disadvantages and offered suggestions for improvement. The research questions examined teacher and principal perceptions of the impact of implementation. Themes of the district's implementation strengths and weaknesses were identified through the use of thematic analysis. The key findings focused on the apparent impact of grading reform when Coherence Framework drivers are present and aligned. Clear impact with regard to summative EOG test data also indicated significance in using standards-based grades to provide feedback. Areas that were identified as needing improvement surrounded consistency and support in focusing direction, cultivating collaborative cultures, deepening learning, securing accountability, and leadership. Knowing the perceived effectiveness, even when all the right drivers are not perfectly consistent, may help teachers and leaders commit to the implementation efforts when striving to more effectively support teaching and learning. The results of this study produced clear implications for maintaining standards-based grading implementation efforts. Furthermore, maximizing the potential of future reform initiatives and making them easier to replicate in the future will come from realizing the support that building leaders and teachers require to be better prepared to support grading reform efforts in their schools. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2024
23. Tactical Transitions and Exploring Experiences of Veterans Moving to Student Roles: A Multiple Case Study
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Elizabeth Patricia McLain
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As student veterans enter higher education after service, there is a need for more knowledge about their transitional experiences. The issues facing this group of students have an impact, not only on the student, but also faculty, administrators, and student peers. This study focused on articulating these transition experiences utilizing Schlossberg's theory of transition and the 4S structure of situation, support, self, and strategies. This research used a multiple case study approach to explore the transition experiences of student veterans. Each participant was interviewed about their experiences attending college after military service using an instrument designed specifically for this study. The research questions focused on the factors that played a role in the decision to attend school and how the participants experienced their transition: What are the factors affecting the transition process for veterans? How do veterans experience role exit during the transition from service to educational institution? What factors affect the decision of a veteran to matriculate, leave school, or stay through to graduation? The results showed that administrative processes were a common frustration among participants. Participants described difficulties in the transition due to the functional differences between being a soldier and being a student. More research should be done into these transitions and how they impact the decisions of the veteran about college. By understanding the transition experiences of student veterans, institutions can find ways to support them. Establishing campus veteran centers and student veteran portals, providing educational opportunities for staff about veterans, and developing avenues for collaboration between educational institutions are recommended to provide transitional support for veterans. Future research could examine the impact of these recommendations and help to create plans for continuous improvement. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2024
24. A Case Study of the Implementation of a Trauma Informed Schools Approach to Classroom Management
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Kim McLain
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The problem addressed in this study was that teachers feel ill-equipped to handle students who have been impacted by trauma. The purpose of this study was to examine the teachers' experiences in implementing a trauma informed schools (TIS) approach to classroom management in rural Tennessee. The theoretical framework used is Bronfenbrenner's Ecological Systems Approach (1978). The ecological model best synthesizes an approach to integrating the TIS approach in the primary grades, considering the benefits and challenges that can influence how the school system meets the individual students' needs. The final sample included 10 teachers at Spencer Elementary School with at least 5 years of teaching experience. Purposive sampling was used to choose the criteria for selecting participants. Semi-structured interviews with open-ended questions and documents related to a TIS approach, were used as the data collection tools to optimize the research results. By utilizing documentation such as notes and interview transcripts, I could understand the valid data critical in advancing trauma-informed care in the classroom setting. This study used member-checking techniques and triangulation to provide credibility and the study's trustworthiness. The findings indicate that the teachers interviewed implemented a TIS approach using strategies of implementation, supports for students, classroom management, and learning environment. Teachers are not using the same strategies or resources to implement the TIS approach. Therefore, there is a lack of consistency among teachers. The study's results highlighted the need for ongoing and focused professional development for all the faculty, staff, and mental health committees. For future research, I recommend including a phenomenological study to examine teachers' experiences after implementing a TIS approach in tiers 2 and 3. In practice, I recommend fostering collaboration between faculty, parents, counselors, and the community to create a student support network. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2024
25. Meteorite Parent Body Aqueous Alteration Simulations of Interstellar Residue Analogs
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Qasim, Danna, McLain, Hannah L., Aponte, Jose C., Glavin, Daniel P., Dworkin, Jason P., and Materese, Christopher K.
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Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Astrophysics of Galaxies ,Astrophysics - Solar and Stellar Astrophysics ,Physics - Geophysics - Abstract
Some families of carbonaceous chondrites are rich in prebiotic organics that may have contributed to the origin of life on Earth and elsewhere. However, the formation and chemical evolution of complex soluble organic molecules from interstellar precursors under relevant parent body conditions has not been thoroughly investigated. In this study, we approach this topic by simulating meteorite parent body aqueous alteration of interstellar residue analogs. The distributions of amines and amino acids are qualitatively and quantitatively investigated and linked to closing the gap between interstellar and meteoritic prebiotic organic abundances. We find that the abundance trend of methylamine > ethylamine> glycine > serine > alanine > \b{eta}-alanine does not change from pre- to post-aqueous alteration, suggesting that certain cloud conditions have an influential role on the distributions of interstellar-inherited meteoritic organics. However, the abundances for most of the amines and amino acids studied here varied by about 2-fold when aqueously processed for 7 days at 125 {\deg}C, and the changes in the {\alpha}- to \b{eta}-alanine ratio were consistent with those of aqueously altered carbonaceous chondrites, pointing to an influential role of meteorite parent body processing on the distributions of interstellar-inherited meteoritic organics. We detected higher abundances of {\alpha}- over \b{eta}-alanine, which is opposite to what is typically observed in aqueously altered carbonaceous chondrites; these results may be explained by at least the lack of minerals and insoluble organic matter-relevant materials in the experiments. The high abundance of volatile amines in the non-aqueously altered samples suggests that these types of interstellar volatiles can be efficiently transferred to asteroids and comets, supporting the idea of the presence of interstellar organics in solar system objects., Comment: see overview https://www.nasa.gov/feature/goddard/2023/nasa-scientists-study-life-origins-by-simulating-a-mini-cosmic-evolution/
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- 2023
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26. Clustering Patterns of 24-Hour Physical Activity in Children 6–36 Months Old.
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Olejua, Peter, McLain, Alexander C., Inak, Nabila, Dowda, Marsha, and Pate, Russell R.
- Abstract
Purpose: To determine 24-hour physical activity (PA) clusters in children 6–36 months of age, factors associated with the clusters, and their agreement across time. Method: A longitudinal study followed 150 infants from South Carolina up to 36 months of age. Measures included 24-hour PA and demographic data. Functional clustering was used to obtain the clusters. The association between cluster membership and infant/parent characteristics was examined by Kruskal–Wallis and chi-squared tests. Concordance was measured with the kappa coefficient and percent agreement. Results: At each follow-up, 3 clusters were optimal, identified as late activity (cluster 1), high activity (cluster 2), and medium activity (cluster 3). The defining feature of the late activity cluster was that their physical activity (PA) activity was shifted to later in the day versus children in clusters 2 and 3. At 6 months, the clusters were associated with race (<0.001), crawling (0.043), other children in the household (0.043), and mother's education (0.004); at 12 months with race (0.029), childcare (<0.001), and education (<0.001); and at 36 months with other children in the household (0.019). Clusters showed moderate agreement (kappa =.41 [.25 to.57], agreement = 61% [49% to 72%]) between 6 and 12 months and, at 36 months, showed no agreement with either 6 or 12 months. Conclusion: Twenty-four-hour PA can be clustered into medium, high, and late PA. Further research is needed into the consequences of late sleeping in children at this age. Clusters are associated with household and childcare factors, and cluster membership is dynamic across time. [ABSTRACT FROM AUTHOR]
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- 2025
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27. Electrochemical Carbon Dioxide Capture and Concentration
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Zito, Alessandra M, Clarke, Lauren E, Barlow, Jeffrey M, Bím, Daniel, Zhang, Zisheng, Ripley, Katelyn M, Li, Clarabella J, Kummeth, Amanda, Leonard, McLain E, Alexandrova, Anastassia N, Brushett, Fikile R, and Yang, Jenny Y
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Life on Land ,Chemical Sciences ,General Chemistry - Abstract
Electrochemical carbon capture and concentration (eCCC) offers a promising alternative to thermochemical processes as it circumvents the limitations of temperature-driven capture and release. This review will discuss a wide range of eCCC approaches, starting with the first examples reported in the 1960s and 1970s, then transitioning into more recent approaches and future outlooks. For each approach, the achievements in the field, current challenges, and opportunities for improvement will be described. This review is a comprehensive survey of the eCCC field and evaluates the chemical, theoretical, and electrochemical engineering aspects of different methods to aid in the development of modern economical eCCC technologies that can be utilized in large-scale carbon capture and sequestration (CCS) processes.
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- 2023
28. Neighborhood Socioeconomic Status, Green Space, and Walkability and Risk for Falls Among Postmenopausal Women: The Women's Health Initiative
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Wende, Marilyn E, Lohman, Matthew C, Friedman, Daniela B, McLain, Alexander C, LaMonte, Michael J, Whitsel, Eric A, Shadyab, Aladdin H, Garcia, Lorena, Chrisinger, Benjamin W, Pan, Kathy, Bird, Chloe E, Sarto, Gloria E, and Kaczynski, Andrew T
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Public Health ,Health Sciences ,Clinical Research ,Aging ,Behavioral and Social Science ,Rehabilitation ,Humans ,Female ,Postmenopause ,Social Class ,Women's Health ,Residence Characteristics ,Walking ,Paediatrics and Reproductive Medicine ,Public Health and Health Services ,Midwifery ,Public health ,Policy and administration - Abstract
PurposeThis study estimated associations between neighborhood socioeconomic status (NSES), walkability, green space, and incident falls among postmenopausal women and evaluated modifiers of these associations, including study arm, race and ethnicity, baseline household income, baseline walking, age at enrollment, baseline low physical functioning, baseline fall history, climate region, and urban-rural residence.MethodsThe Women's Health Initiative recruited a national sample of postmenopausal women (50-79 years) across 40 U.S. clinical centers and conducted yearly assessments from 1993 to 2005 (n = 161,808). Women reporting a history of hip fracture or walking limitations were excluded, yielding a final sample of 157,583 participants. Falling was reported annually. NSES (income/wealth, education, occupation), walkability (population density, diversity of land cover, nearby high-traffic roadways), and green space (exposure to vegetation) were calculated annually and categorized into tertiles (low, intermediate, high). Generalized estimating equations assessed longitudinal relationships.ResultsNSES was associated with falling before adjustment (high vs. low, odds ratio, 1.01; 95% confidence interval, 1.00-1.01). Walkability was significantly associated with falls after adjustment (high vs. low, odds ratio, 0.99; 95% confidence interval, 0.98-0.99). Green space was not associated with falling before or after adjustment. Study arm, race and ethnicity, household income, age, low physical functioning, fall history, and climate region modified the relationship between NSES and falling. Race and ethnicity, age, fall history, and climate region modified relationships between walkability and green space and falling.ConclusionsOur results did not show strong associations of NSES, walkability, or green space with falling. Future research should incorporate granular environmental measures that may directly relate to physical activity and outdoor engagement.
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- 2023
29. 3UCubed: The IMAP Student Collaboration CubeSat Project
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Alfred, Marcus, Smith, Sonya, Kim, Charles, McGee, Carissma, Davis, Ruth, Pope, Myles, Richardson, Taran, Sager, Trinity, Williams, Avery, Gales, Matthew, Baptiste, Wilson Jean, Kierstdet, Tyrese, Ogunbanjo, Oluwatamilore, Peticolas, Laura, Cominsky, Lynn, Jernigan, Garrett, Reedy, Jeffrey, Clarke, Doug, Blais, Sabrina, Castellanos-Vasquez, Erik, Dawson, Jack, Ramirez, Erika Diaz, Foster, Walter, Carreno, Cristopher Gopar, Joerger, Haley, Mora, Onasis, Vasquez, Alex, Mehta, Sanjeev, Lugaz, Noé, Bartolone, Lindsay, Burgett, Marc Lessard Jenna, Bisson, Kelly, Bradley, Luke, Campbell, Jeffrey, Champagne, Mathieu, Chesley, Alex, Grant, Jeff, Jiang, Hanyu, King, Jared, McLain, Emily, Rollend, Matthew, and Woods, Shane
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Astrophysics - Instrumentation and Methods for Astrophysics ,Astrophysics - Astrophysics of Galaxies - Abstract
The 3UCubed project is a 3U CubeSat being jointly developed by the University of New Hampshire, Sonoma State University, and Howard University as a part of the NASA Interstellar Mapping and Acceleration Probe, IMAP, student collaboration. This project comprises of a multidisciplinary team of undergraduate students from all three universities. The mission goal of the 3UCubed is to understand how Earths polar upper atmosphere the thermosphere in Earths auroral regions, responds to particle precipitation and solar wind forcing, and internal magnetospheric processes. 3UCubed includes two instruments with rocket heritage to achieve the science mission: an ultraviolet photomultiplier tube, UVPMT, and an electron retarding potential analyzer ERPA. The spacecraft bus consists of the following subsystems: Attitude Determination and Control, Command and Data Handling, Power, Communication, Structural, and Thermal. Currently, the project is in the post-PDR stage, starting to build and test engineering models to develop a FlatSat prior to critical design review in 2023. The goal is to launch at least one 3U CubeSat to collect science data close to the anticipated peak of Solar Cycle 25 around July 2025. Our mother mission, IMAP, is also projected to launch in 2025, which will let us jointly analyze the science data of the main mission, providing the solar wind measurements and inputs to the magnetosphere with that of 3UCubed, providing the response of Earths cusp to these inputs.
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- 2022
30. Sparse high-dimensional linear regression with a partitioned empirical Bayes ECM algorithm
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McLain, Alexander C., Zgodic, Anja, and Bondell, Howard
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Statistics - Methodology ,Statistics - Machine Learning - Abstract
Bayesian variable selection methods are powerful techniques for fitting and inferring on sparse high-dimensional linear regression models. However, many are computationally intensive or require restrictive prior distributions on model parameters. In this paper, we proposed a computationally efficient and powerful Bayesian approach for sparse high-dimensional linear regression. Minimal prior assumptions on the parameters are required through the use of plug-in empirical Bayes estimates of hyperparameters. Efficient maximum a posteriori (MAP) estimation is completed through a Parameter-Expanded Expectation-Conditional-Maximization (PX-ECM) algorithm. The PX-ECM results in a robust computationally efficient coordinate-wise optimization which -- when updating the coefficient for a particular predictor -- adjusts for the impact of other predictor variables. The completion of the E-step uses an approach motivated by the popular two-group approach to multiple testing. The result is a PaRtitiOned empirical Bayes Ecm (PROBE) algorithm applied to sparse high-dimensional linear regression, which can be completed using one-at-a-time or all-at-once type optimization. We compare the empirical properties of PROBE to comparable approaches with numerous simulation studies and analyses of cancer cell drug responses. The proposed approach is implemented in the R package probe.
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- 2022
31. Incremental cycle bases for cycle-based pose graph optimization
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Forsgren, Brendon, Brink, Kevin, Ganesh, Prashant, and McLain, Timothy
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Computer Science - Robotics - Abstract
Pose graph optimization is a special case of the simultaneous localization and mapping problem where the only variables to be estimated are pose variables and the only measurements are inter-pose constraints. The vast majority of pose graph optimization techniques are vertex based (variables are robot poses), but recent work has parameterized the pose graph optimization problem in a relative fashion (variables are the transformations between poses) that utilizes a minimum cycle basis to maximize the sparsity of the problem. We explore the construction of a cycle basis in an incremental manner while maximizing the sparsity. We validate an algorithm that constructs a sparse cycle basis incrementally and compare its performance with a minimum cycle basis. Additionally, we present an algorithm to approximate the minimum cycle basis of two graphs that are sparsely connected as is common in multi-agent scenarios. Lastly, the relative parameterization of pose graph optimization has been limited to using rigid body transforms on SE(2) or SE(3) as the constraints between poses. We introduce a methodology to allow for the use of lower-degree-of-freedom measurements in the relative pose graph optimization problem. We provide extensive validation of our algorithms on standard benchmarks, simulated datasets, and custom hardware., Comment: Changes made based on reviewer feedback
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- 2022
32. Group-$k$ Consistent Measurement Set Maximization for Robust Outlier Detection
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Forsgren, Brendon, Vasudevan, Ram, Kaess, Michael, McLain, Timothy W., and Mangelson, Joshua G.
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Computer Science - Robotics - Abstract
This paper presents a method for the robust selection of measurements in a simultaneous localization and mapping (SLAM) framework. Existing methods check consistency or compatibility on a pairwise basis, however many measurement types are not sufficiently constrained in a pairwise scenario to determine if either measurement is inconsistent with the other. This paper presents group-$k$ consistency maximization (G$k$CM) that estimates the largest set of measurements that is internally group-$k$ consistent. Solving for the largest set of group-$k$ consistent measurements can be formulated as an instance of the maximum clique problem on generalized graphs and can be solved by adapting current methods. This paper evaluates the performance of G$k$CM using simulated data and compares it to pairwise consistency maximization (PCM) presented in previous work.
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- 2022
33. Acetaminophen Levels Found in Recycled Wastewater Alter Soil Microbial Community Structure and Functional Diversity
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McLain, Nathan K, Gomez, Melissa Y, and Gachomo, Emma W
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Biological Sciences ,Environmental Sciences ,Pollution and Contamination ,Clean Water and Sanitation ,Wastewater ,Soil ,Acetaminophen ,Agricultural Irrigation ,Bacteria ,Crops ,Agricultural ,Microbiota ,Carboxylic Acids ,Soil Microbiology ,Contaminants of emerging concern ,Treated wastewater ,Soil bacterial community ,Soil microbiome ,Soil Sciences ,Ecology ,Microbiology ,Soil sciences - Abstract
The practice of using recycled wastewater (RWW) has been successfully adopted to address the growing demand for clean water. However, chemicals of emerging concern (CECs) including pharmaceutical products remain in the RWW even after additional cleaning. When RWW is used to irrigate crops or landscapes, these chemicals can enter these and adjacent environments. Unfortunately, the overall composition and concentrations of CECs found in different RWW sources vary, and even the same source can vary over time. Therefore, we selected one compound that is found frequently and in high concentrations in many RWW sources, acetaminophen (APAP), to use for our study. Using greenhouse grown eggplants treated with APAP concentrations within the ranges found in RWW effluents, we investigated the short-term impacts of APAP on the soil bacterial population under agricultural settings. Using Illumina sequencing-based approaches, we showed that APAP has the potential to cause shifts in the microbial community most likely by positively selecting for bacteria that are capable of metabolizing the breakdown products of APAP such as glycosides and carboxylic acids. Community-level physiological profiles of carbon metabolism were evaluated using Biolog EcoPlate as a proxy for community functions. The Biolog plates indicated that the metabolism of amines, amino acids, carbohydrates, carboxylic acids, and polymers was significantly higher in the presence of APAP. Abundance of microorganisms of importance to plant health and productivity was altered by APAP. Our results indicate that the soil microbial community and functions could be altered by APAP at concentrations found in RWW. Our findings contribute to the knowledge base needed to guide policies regulating RWW reuse in agriculture and also highlight the need to further investigate the effects of CECs found in RWW on soil microbiomes.
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- 2023
34. Predicting Outcomes of Language Rehabilitation: Prognostic Factors for Immediate and Long-Term Outcomes After Aphasia Therapy.
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Kristinsson, Sigfus, Basilakos, Alexandra, den Ouden, Dirk, Cassarly, Christy, Spell, Leigh, Bonilha, Leonardo, Rorden, Chris, Hillis, Argye, Hickok, Gregory, Johnson, Lisa, Busby, Natalie, Walker, Grant, McLain, Alexander, and Fridriksson, Julius
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Humans ,Aphasia ,Language ,Prognosis ,Stroke Rehabilitation ,Stroke ,Speech Therapy - Abstract
BACKGROUND: Aphasia therapy is an effective approach to improve language function in chronic aphasia. However, it remains unclear what prognostic factors facilitate therapy response at the individual level. Here, we utilized data from the POLAR (Predicting Outcomes of Language Rehabilitation in Aphasia) trial to (a) determine therapy-induced change in confrontation naming and long-term maintenance of naming gains and (b) examine the extent to which aphasia severity, age, education, time postonset, and cognitive reserve predict naming gains at 1 week, 1 month, and 6 months posttherapy. METHOD: A total of 107 participants with chronic (≥ 12 months poststroke) aphasia underwent extensive case history, cognitive-linguistic testing, and a neuroimaging workup prior to receiving 6 weeks of impairment-based language therapy. Therapy-induced change in naming performance (measured as raw change on the 175-item Philadelphia Naming Test [PNT]) was assessed 1 week after therapy and at follow-up time points 1 month and 6 months after therapy completion. Change in naming performance over time was evaluated using paired t tests, and linear mixed-effects models were constructed to examine the association between prognostic factors and therapy outcomes. RESULTS: Naming performance was improved by 5.9 PNT items (Cohens d = 0.56, p < .001) 1 week after therapy and by 6.4 (d = 0.66, p < .001) and 7.5 (d = 0.65, p < .001) PNT items at 1 month and 6 months after therapy completion, respectively. Aphasia severity emerged as the strongest predictor of naming improvement recovery across time points; mild (ß = 5.85-9.02) and moderate (ß = 9.65-11.54) impairment predicted better recovery than severe (ß = 1.31-3.37) and very severe (ß = 0.20-0.32) aphasia. Age was an emergent prognostic factor for recovery 1 month (ß = -0.14) and 6 months (ß = -0.20) after therapy, and time postonset (ß = -0.05) was associated with retention of naming gains at 6 months posttherapy. CONCLUSIONS: These results suggest that therapy-induced naming improvement is predictable based on several easily measurable prognostic factors. Broadly speaking, these results suggest that prognostication procedures in aphasia therapy can be improved and indicate that personalization of therapy is a realistic goal in the near future. SUPPLEMENTAL MATERIAL: https://doi.org/10.23641/asha.22141829.
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- 2023
35. Empowering Village Women through CVET: Identifying Challenges, Solutions, and Motivating Factors in Tamil Nadu's Coastal Seaweed Farming.
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Soundariya S, Jisha Mary Lg, Srividya Sheshadri, Marcia L. McLain, Amritha N., Bettina E. Ryf, and Rao R. Bhavani
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- 2024
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36. The Rise of the Indo-Pacific and the Theoretical Foundations of India-Indonesia Defence Cooperation
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Gill, Don McLain, Singh, Swaran, editor, and Marwah, Reena, editor
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- 2024
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37. Prevalence, aetiology, and hospital outcomes of paediatric acute critical illness in resource-constrained settings (Global PARITY): a multicentre, international, point prevalence and prospective cohort study
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Abdul-Mumin, Alhassan, Allen, Nabisere, Amarillo, Paloma, Amegan-Aho, Kokou H, Arancibia, Pamela C, Arif, Fehmina, Arteaga, Liliana Y, Asibey, Jacqueline G, Ávila Guerrero, Nataly, Bacha, Tigist, Beltran Hernandez, Briam D, Bwiza Muhire, Hippolyte, Calderon-Cardenas, Juan S, Cañete, Mariana Lucía, Chimedbazar, Dulamragchaa, Curi, Claudia P, Emmanuel, Tenywa, Escobar, Maria L, Esposto, Sofia, Figueroa Vargas, Arieth, Fustiñana, Ana L, Giulietti, Marina, Habib, Muhammad Irfan, Havugarurema, Pascal, Hernandez Somerson, Lucia C, Hincapie Saldarriaga, Nayibe, Hooli, Shubhada, Isabirye, Jacob, Jamro, Saifullah, Jaramillo-Bustamante, Juan C, Jurado Salcedo, Liliana P, Kabir, Halima, Karanja, Caleb K, Keita, Adama Mamby, Kilba, Marie-Charlyne F, Kohn-Loncarica, Guillermo, Krishnamurthy, Kandamaran, Lasso Noguera, Jorhk D, Majdalani, Marianne N, Monje Cardona, Isabel C, Montero Nuñez, Emilse N, Mulgado Aguas, Celia I, Mussa, Raya Y, Nebaza, John H, Noya, María N, Obodai, Edna O, Ocampo, Carmen E, Ödek, Çağlar, Oguonu, Tagbo, Osew-Gyamfi, Afua K, Owusu, Larko D, Owusu, Sheila A, Palencia Bocarejo, Mayerly M, Pantoja Chamorro, Freddy I, Pedroza, Aurora L, Peter, Walugembe S, Prego, Javier, Rahi, Amal C, Ramírez Hernández, Carmen R, Rino, Pedro, Sankar, Jhuma, Sawe, Hendry R, Serra, Jesus A, Shaieb, Agustin G, Shirk, Arianna McLain, Shonkhuuz, Enkhtur, Sierra-Abaunza, Javier M, Soomro, Khurram, Sow, Samba O, Tagoola, Abner V, Tekleab, Atnafu M, Torres, Margarita M, Umuhoza, Christian, Vasquez-Hoyos, Pablo, Wang, Justin Q Y, Yakubu, Rafiuk C, Yeboah, Rita Fosu, Zamarbide, María P, Kortz, Teresa B, Holloway, Adrian, Agulnik, Asya, He, David, Rivera, Stephanie Gordon, Abbas, Qalab, Appiah, John Adabie, Arias, Anita V, Attebery, Jonah, Camacho-Cruz, Jhon, Caporal, Paula, de Sa Rodrigues, Karla Emilia, Fink, Ericka, Kissoon, Niranjan, Lee, Jan Hau, López-Barón, Eliana, Murthy, Srinivas, Muttalib, Fiona, Nielsen, Katie, Remy, Kenneth, Sakaan, Firas, Andre-von Arnim, Amelie von Saint, Rodrigues, Adriana Teixeira, Blackwelder, William, Wiens, Matthew O, and Bhutta, Adnan
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- 2025
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38. Longitudinal Change in Physical Activity in Children 6 to 36 Months of Age
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Pate, Russell R., Dowda, Marsha, McLain, Alexander C., Frongillo, Edward A., Saunders, Ruth P., Inak, Nabila, and Cordan, Kerry L.
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- 2025
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39. Operational considerations for approximating molecular assembly by Fourier transform mass spectrometry
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Gabriella M. Weiss, Silke Asche, Hannah McLain, Angela H. Chung, S. Hessam M. Mehr, Leroy Cronin, and Heather V. Graham
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assembly theory ,molecular assembly ,biosignatures ,orbitrap mass spectrometry ,electrospray ionization ,amino acids ,Astronomy ,QB1-991 ,Geophysics. Cosmic physics ,QC801-809 - Abstract
Some of the most common life detection techniques for planetary exploration focus on organic molecule characterization, but life on other planets may not chemically resemble that found on Earth. Therefore, an agnostic detection system of signs of life (biosignatures) is essential. Assembly Theory (AT) is a conceptual tool for understanding evolution and object formation that has been useful in developing an approach to quantify molecular complexity via the Molecular Assembly index, which when combined with abundance, allows the total assembly number of a sample to be calculated. Because AT makes no assumptions about the chemistry of life, it is an agnostic tool that identifies molecular structures that are probabilistically more likely to have arisen via selection and therefore biological processes. AT uses graph theory to quantify molecular complexity by finding the shortest sequence of joining operations (e.g., chemical bonds) required to build a compound from a set of starting materials allowing recursive reuse of units or fragments. For molecules, this number of steps is the MA value. We explore the use of Fourier transform (i.e., Orbitrap) mass spectrometry for approximating MA by quantifying how a molecule breaks apart into fragments. We analyze amino acid and nucleoside standards individually and as mixtures, as well as amino acids from naturally occurring biological and meteoritic sources. Aside from sample type, we evaluate the effect of analyte concentration and fragmentation energies on the generated MA value. Additionally, an older Orbitrap model similar to flight prototype instrumentation, was tested. The raw mass spectrometry data was compared with two different MA processing algorithms - one that uses the parent molecule spectrum and molecular weight (recursive) and one that does not (non-recursive). Concentration, fragmentation energy, and sample type all influence the raw mass spectra. However, the recursive algorithm reports MA estimates that are more consistent across sample types, concentrations, and fragmentation energies. We discuss instrument requirements for approximating MA that can be applied to future flight and sample return missions.
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- 2024
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40. Bradyrhizobium japonicum IRAT FA3 promotes salt tolerance through jasmonic acid priming in Arabidopsis thaliana
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Gomez, Melissa Y, Schroeder, Mercedes M, Chieb, Maha, McLain, Nathan K, and Gachomo, Emma W
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Plant Biology ,Agricultural ,Veterinary and Food Sciences ,Crop and Pasture Production ,Biological Sciences ,Arabidopsis ,Salt Tolerance ,Stress ,Physiological ,Sodium ,Plant Roots ,Gene Expression Regulation ,Plant ,Transcription Factors ,Arabidopsis Proteins ,Plant growth promoting rhizobacteria ,Salt stress ,JAR1 ,MYC2 ,Reactive oxygen species ,Microbiology ,Plant Biology & Botany ,Crop and pasture production ,Plant biology - Abstract
BackgroundPlant growth promoting rhizobacteria (PGPR), such as Bradyrhizobium japonicum IRAT FA3, are able to improve seed germination and plant growth under various biotic and abiotic stress conditions, including high salinity stress. PGPR can affect plants' responses to stress via multiple pathways which are often interconnected but were previously thought to be distinct. Although the overall impacts of PGPR on plant growth and stress tolerance have been well documented, the underlying mechanisms are not fully elucidated. This work contributes to understanding how PGPR promote abiotic stress by revealing major plant pathways triggered by B. japonicum under salt stress.ResultsThe plant growth-promoting rhizobacterial (PGPR) strain Bradyrhizobium japonicum IRAT FA3 reduced the levels of sodium in Arabidopsis thaliana by 37.7%. B. japonicum primed plants as it stimulated an increase in jasmonates (JA) and modulated hydrogen peroxide production shortly after inoculation. B. japonicum-primed plants displayed enhanced shoot biomass, reduced lipid peroxidation and limited sodium accumulation under salt stress conditions. Q(RT)-PCR analysis of JA and abiotic stress-related gene expression in Arabidopsis plants pretreated with B. japonicum and followed by six hours of salt stress revealed differential gene expression compared to non-inoculated plants. Response to Desiccation (RD) gene RD20 and reactive oxygen species scavenging genes CAT3 and MDAR2 were up-regulated in shoots while CAT3 and RD22 were increased in roots by B. japonicum, suggesting roles for these genes in B. japonicum-mediated salt tolerance. B. japonicum also influenced reductions of RD22, MSD1, DHAR and MYC2 in shoots and DHAR, ADC2, RD20, RD29B, GTR1, ANAC055, VSP1 and VSP2 gene expression in roots under salt stress.ConclusionOur data showed that MYC2 and JAR1 are required for B. japonicum-induced shoot growth in both salt stressed and non-stressed plants. The observed microbially influenced reactions to salinity stress in inoculated plants underscore the complexity of the B. japonicum jasmonic acid-mediated plant response salt tolerance.
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- 2023
41. Differences in Drug Poisonings Among Those Who Identify as Transgender Compared to Cisgender: An Analysis of the Toxicology Investigators Consortium (ToxIC) Core Registry, United States 2017–2021
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Magnusson, Kristine, Glidden, Emily, Mustaquim, Desiree, Welder, Laura E., Stokes, Erin K., Beauchamp, Gillian A., Greenberg, Marna R., Aldy, Kim, Mazzaccaro, Richard J., Careyva, Beth A., Sabino, Judith N., Fikse, Derek J., McLain, Katelyn, and Amaducci, Alexandra M.
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- 2024
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42. Cluster Detection Capabilities of the Average Nearest Neighbor Ratio and Ripley's K Function on Areal Data: an Empirical Assessment
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Vidanapathirana, Nadeesha, Wang, Yuan, McLain, Alexander C., and Self, Stella
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Statistics - Applications - Abstract
Spatial clustering detection methods are widely used in many fields including epidemiology, ecology, biology, physics, and sociology. In these fields, areal data is often of interest; such data may result from spatial aggregation (e.g. the number disease cases in a county) or may be inherent attributes of the areal unit as a whole (e.g. the habitat suitability of conserved land parcel). This study aims to assess the performance of two spatial clustering detection methods on areal data: the average nearest neighbor (ANN) ratio and Ripley's K function. These methods are designed for point process data, but their ease of implementation in GIS software (e.g., in ESRI ArcGIS) and the lack of analogous methods for areal data have contributed to their use for areal data. Despite the popularity of applying these methods to areal data, little research has explored their properties in the areal data context. In this paper we conduct a simulation study to evaluate the performance of each method for areal data under various areal structures and types of spatial dependence. These studies find that traditional approach to hypothesis testing using the ANN ratio or Ripley's K function results in inflated empirical type I rates when applied to areal data. We demonstrate that this issue can be remedied for both approaches by using Monte Carlo methods which acknowledge the areal nature of the data to estimate the distribution of the test statistic under the null hypothesis. While such an approach is not currently implemented in ArcGIS, it can be easily done in R using code provided by the authors.
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- 2022
43. A Generalization of Ripley's K Function for the Detection of Spatial Clustering in Areal Data
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Self, Stella, Overby, Anna, Zgodic, Anja, White, David, McLain, Alexander, and Dyckman, Caitlin
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Statistics - Methodology ,Mathematics - Statistics Theory - Abstract
Spatial clustering detection has a variety of applications in diverse fields, including identifying infectious disease outbreaks, assessing land use patterns, pinpointing crime hotspots, and identifying clusters of neurons in brain imaging applications. While performing spatial clustering analysis on point process data is common, applications to areal data are frequently of interest. For example, researchers might wish to know if census tracts with a case of a rare medical condition or an outbreak of an infectious disease tend to cluster together spatially. Since few spatial clustering methods are designed for areal data, researchers often reduce the areal data to point process data (e.g., using the centroid of each areal unit) and apply methods designed for point process data, such as Ripley's K function or the average nearest neighbor method. However, since these methods were not designed for areal data, a number of issues can arise. For example, we show that they can result in loss of power and/or a significantly inflated type I error rate. To address these issues, we propose a generalization of Ripley's K function designed specifically to detect spatial clustering in areal data. We compare its performance to that of the traditional Ripley's K function, the average nearest neighbor method, and the spatial scan statistic with an extensive simulation study. We then evaluate the real world performance of the method by using it to detect spatial clustering in land parcels containing conservation easements and US counties with high pediatric overweight/obesity rates.
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- 2022
44. Medical Alert Cards for Pediatric Patients With Antegrade Continence Enemas to Enhance Awareness
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Bokova, Elizaveta, Prasade, Ninad, Elhalaby, Ismael, Martin-McLain, Margaret, Lewis, Wendy E., Feira, Christine N., Lim, Irene Isabel P., and Rentea, Rebecca M.
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- 2024
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45. Group-k consistent measurement set maximization via maximum clique over k-uniform hypergraphs for robust multi-robot map merging.
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Brendon Forsgren, Michael Kaess, Ram Vasudevan, Timothy W. McLain, and Joshua G. Mangelson
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- 2024
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46. Womens Experiences With Family Planning Under COVID-19: A Cross-Sectional, Interactive Voice Response Survey in Malawi, Nepal, Niger, and Uganda.
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Brunie, Aurélie, Austin, Gwyneth, Arkin, Jamie, Archie, Samantha, Amongin, Dinah, Ndejjo, Rawlance, Acharya, Saujanya, Thapa, Basant, Brittingham, Sarah, McLain, Grace, Mkandawire, Philip, Doudou, Maimouna, and Prata, Ndola
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COVID-19 ,Contraception ,Contraception Behavior ,Contraceptive Agents ,Cross-Sectional Studies ,Family Planning Services ,Female ,Humans ,Malawi ,Nepal ,Niger ,Pandemics ,Pregnancy ,Retrospective Studies ,Uganda - Abstract
INTRODUCTION: We conducted an assessment in Malawi, Nepal, Niger, and Uganda to document access-related reasons for not using contraceptive methods during the COVID-19 pandemic that led to unintended pregnancies, describe use of modern contraception among women in potential need of contraception compared to before the pandemic, examine method choice, and describe barriers to contraceptive access and use. METHODS: Between December 2020 and May 2021, we conducted an opt-in phone survey with 21,692 women, followed by an outbound survey with 5,124 women who used modern nonpermanent contraceptive methods or who did not want to get pregnant within 2 years but were not using a modern contraceptive method. The surveys examined current behaviors and documented behaviors before the pandemic retrospectively. We used multivariable logistic regression models to examine factors associated with contraceptive use dynamics during COVID-19. RESULTS: Pregnant women surveyed reported that the pandemic had affected their ability to delay or avoid getting pregnant, ranging from 27% in Nepal to 44% in Uganda. The percentage of respondents to the outbound survey using modern contraception decreased during the pandemic in all countries except Niger. Fear of COVID-19 infection was associated with discontinuing modern contraception in Malawi and with not adopting a modern method among nonusers in Niger. Over 79% of surveyed users were using their preferred method. Among nonusers who tried obtaining a method, reasons for nonuse included unavailability of the preferred method or of providers and lack of money; nonusers who wanted a method but did not try to obtain one cited fear of COVID-19 infection. CONCLUSION: We found evidence of surveyed women attributing unintended pregnancies to the pandemic and examples of constraints to contraceptive access and use on the supply and demand side. The effects of the pandemic must be interpreted within the local contraceptive, health system, and epidemiological context.
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- 2022
47. Bayesian group testing regression models for spatial data
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Huang, Rongjie, McLain, Alexander C., Herrin, Brian H., Nolan, Melissa, Cai, Bo, and Self, Stella
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- 2024
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48. Debris-flow avulsion tendency estimated from boreholes or channel cuts
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McLain, Michael C., Santi, Paul M., and Pyles, David R.
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- 2024
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49. Mechanisms and management of loss of response to anti-TNF therapy for patients with Crohn's disease: 3-year data from the prospective, multicentre PANTS cohort study
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Patel, Vinod, Mazhar, Zia, Saich, Rebecca, Colleypriest, Ben, Tham, Tony C, Iqbal, Tariq, Kaushik, Vishal, Murugesan, Senthil, Singh, Salil, Weaver, Sean, Preston, Cathryn, Butt, Assad, Smith, Melissa, Basude, Dharamveer, Beale, Amanda, Langlands, Sarah, Direkze, Natalie, Parkes, Miles, Torrente, Franco, De La Revella Negro, Juan, MacDonald, Chris Ewen, Evans, Stephen M, Gunasekera, Anton VJ, Thakur, Alka, Elphick, David, Shenoy, Achuth, Nwokolo, Chuka U, Dhar, Anjan, Cole, Andrew T, Agrawal, Anurag, Bridger, Stephen, Doherty, Julie, Cooper, Sheldon C, de Silva, Shanika, Mowat, Craig, Mayhead, Phillip, Lees, Charlie, Jones, Gareth, Ahmad, Tariq, Hart, James W, Kennedy, Nicholas A, Goodhand, James R, Lin, Simeng, Chanchlani, Neil, Nice, Rachel, McDonald, Timothy J, Bewshea, Claire, Al-Nuaimi, Yusur, Richards, Ellen, Haigh, Richard, Greenish, Huw, Heath, Harry, Gaya, Daniel R, Russell, Richard K, Gervais, Lisa, Dunckley, Paul, Mahmood, Tariq, Banim, Paul JR, Sonwalkar, Sunil, Ghosh, Deb, Phillips, Rosemary H, Azaz, Amer, Sebastian, Shaji, Shenderey, Richard, Armstrong, Lawrence, Bell, Claire, Hariraj, Radhakrishnan, Matthews, Helen, Jafferbhoy, Hasnain, Selinger, Christian P, Zamvar, Veena, De Caestecker, John S, Willmott, Anne, Miller, Richard, Babu, Palani Sathish, Tzivinikos, Christos, Bloom, Stuart L, Chung-Faye, Guy, Croft, Nicholas M, Fell, John ME, Harbord, Marcus, Hart, Ailsa, Hope, Ben, Irving, Peter M, Lindsay, James O, Mawdsley, Joel E, McNair, Alistair, Monahan, Kevin J, Murray, Charles D, Orchard, Timothy, Paul, Thankam, Pollok, Richard, Shah, Neil, Bouri, Sonia, Johnson, Matt W, Modi, Anita, Kabiru, Kasamu Dawa, Baburajan, B K, Bhaduri, Bim, Fagbemi, Andrew Adebayo, Levison, Scott, Limdi, Jimmy K, Watts, Gill, Foley, Stephen, Ramadas, Arvind, MacFaul, George, Mansfield, John, Grellier, Leonie, Morris, Mary-Anne, Tremelling, Mark, Hawkey, Chris, Kirkham, Sian, Charlton, Charles PJ, Rodrigues, Astor, Simmons, Alison, Lewis, Stephen J, Snook, Jonathon, Tighe, Mark, Goggin, Patrick M, De Silva, Aminda N, Lal, Simon, Smith, Mark S, Panter, Simon, Cummings, JR Fraser, Dharmisari, Suranga, Carter, Martyn, Watts, David, Mahmood, Zahid, McLain, Bruce, Sen, Sandip, Pigott, Anna J, Hobday, David, Wesley, Emma, Johnston, Richard, Edwards, Cathryn, Beckly, John, Vani, Deven, Ramakrishnan, Subramaniam, Chaudhary, Rakesh, Trudgill, Nigel J, Cooney, Rachel, Bell, Andy, Prasad, Neeraj, Gordon, John N, Brookes, Matthew J, Li, Andy, Gore, Stephen, Hamilton, Benjamin, Thomas, Amanda, Smith, Rebecca, Roberts, Christopher, Bishara, Maria, and Lees, Charlie W
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- 2024
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50. A hypothesis test for detecting spatial patterns in categorical areal data
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Self, Stella, Zhao, Xingpei, Zgodic, Anja, Overby, Anna, White, David, McLain, Alexander C., and Dyckman, Caitlin
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- 2024
- Full Text
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