Search

Biodiversity is responsible for important ecological processes like productivity and ecosystem stability, and rare species are a major component of biodiversity. Rarity increases a species' vulnerability to disturbances and also makes them difficult to study. Globally, species of freshwater systems are some of the most threatened, and evaluation of rare freshwater species and their habitats is needed to help preserve natural flexibility and ecological function. We conducted an analysis of full fish communities of the upper St. Lawrence River and its major US tributaries, with the goals of determining species locations and abundances, associated environmental conditions, the distribution of distinct fish assemblages across the landscape (with emphasis on communities supporting rare species), and potential threats. From 2009 to 2015, the US Geological Survey (USGS) and Saint Regis Mohawk Tribe (SRMT) worked together using standardized methods to collect community samples within 4 different aquatic realms (shallow and deep lentic, and small and large lotic systems) and determine species-specific fish abundances, frequencies of occurrence, and associated habitat signatures and spatial distributions. Distinct fish assemblages and associated habitat conditions were objectively identified by multivariate and hypothesis-testing methods. We used a geographic information system (GIS) to spatially associate habitat, biotic, and landscape attributes within each stream reach throughout the study area, facilitating quantification of distribution patterns. Comparisons with historical data provided estimates of loss or gain of threatened and endangered species (T&E) colonies. We developed a disturbance index to highlight potential threats to aquatic species. More than 140,000 fishes of 87 species were collected from a total of 1140 sample sites, covering 278 stream reaches, including the endangered Notropis anogenus (Pugnose Shiner), and threatened Hiodon tergisus (Mooneye), Etheostoma pellucidum (Eastern Sand Darter), and Acipenser fulvescens (Lake Sturgeon). We identified 50 distinct fish assemblages differing in species composition, abundance, and/or diversity, but only 13 of those assemblages included a T&E species. The rareness, extent, and patchiness of fish assemblages created a mosaic of fish communities across the landscape, from headwaters to the mainstem of the St. Lawrence River. Comparisons with historic surveys (1978–2008) showed a stable number of T&E species colonies or an increase for some species. The geographic distribution of multimetric disturbance index values showed where combinations of disturbances to fish habitats might affect rare fish species and aquatic communities in the region. The species–habitat associations and fish assemblage distributions can be used for evaluation of species, communities, or habitats that may need protection or restoration. [ABSTRACT FROM AUTHOR]

Silver Chub (Macrhybopsis storeriana) was once a common forage fish in Lake Erie but has declined greatly since the 1950s. Identification of optimal and marginal habitats would help conserve and manage this species. We developed neural networks to use broadscale habitat variables to predict abundance classes of Silver Chub in western Lake Erie, where its largest remaining population exists. Model performance was good, particularly for predicting locations of habitat with the potential to support the highest and lowest abundances of this species. Highest abundances are expected in waters >5 m deep; water depth and distance to coastal habitats were important model features. These models provide initial tools to help conserve this species, but their resolution can be improved with additional data and consideration of other ecological factors., INTRODUCTION The Silver Chub (Macrhybopsis storeriana Kirtland, 1845), a once common Lake Erie species, is now rare. It is listed as Endangered in New York, Ohio, and Ontario. The bulk [...]

Use of environmental DNA (eDNA) to assess distributions of aquatic and semi-aquatic macroorganisms is promising, but sampling schemes may need to be tailored to specific objectives. Given the potentially high variance in aquatic eDNA among replicate grab samples, compositing smaller water volumes collected over a period of time may be more effective for some applications. In this study, we compared eDNA profiles from composite water samples aggregated over three hours with grab water samples. Both sampling patterns were performed with identical autosamplers paired at two different sites in a headwater stream environment, augmented with exogenous fish eDNA from an upstream rearing facility. Samples were filtered through 0.8 μm cellulose nitrate filters and DNA was extracted with a cetyl trimethylammonium bromide procedure. Eukaryotic and bacterial community profiles were derived by amplicon sequencing of 12S ribosomal, 16S ribosomal, and cytochrome oxidase I loci. Operational taxa were assigned to genus with a lowest common ancestor approach for eukaryotes and to family with the RDP Classifier software for prokaryotes. Eukaryotic community profiles were more consistent with composite sampling than grab sampling. Downstream, rarefaction curves suggested faster taxon accumulation for composite samples, and estimated richness was higher for composite samples as a set than for grab samples. Upstream, composite sampling produced lower estimated richness than grab samples, but with overlapping standard errors. Furthermore, a bimodal pattern of richness as a function of sequence counts suggested the impact of clumped particles on upstream samples. Bacterial profiles were insensitive to sample method, consistent with the more even dispersion expected for bacteria compared with eukaryotic eDNA. Overall, samples composited over 3 h performed equal to or better than triplicate grab sampling for quantitative community metrics, despite the higher total sequencing effort provided to grab replicates. On the other hand, taxon-specific detection rates did not differ appreciably and the two methods gave similar estimates of the ratio of the common fish genera Salmo and Coregonus at each site. Unexpectedly, Salmo eDNA dropped out substantially faster than Coregonus eDNA between the two sites regardless of sampling method, suggesting that differential settling affects the estimation of relative abundance. We identified bacterial patterns that were associated with eukaryotic diversity, suggesting potential roles as biomarkers of sample representativeness. [ABSTRACT FROM AUTHOR]

Abstract: Living aquatic communities are largely determined and maintained by the volume and quality of flowing waters, both within lotic systems and in receiving waters of coastal systems. However, flow is one of the most frequently and extensively altered features of rivers and streams; alteration effects are likely to be exacerbated by climate change. Lotic systems vary and different fish species need different environmental conditions, and distinct problems are evident at various spatial scales. New synoptic flow and biological information now make it possible to evaluate the effects of altered flows throughout the Great Lakes Region at scales from the stream reach to the Region. We used estimates of river and streamflow and observed fish abundances to develop tools that specify the response of fish to alterations in those flows. We fit the logistic model to a cumulative fish abundance curve as a function of yield providing an empirical means to develop models of the response of cumulative fish abundance to flows. Response zones of yield for each species in each system type (based on size and thermal class) illustrate how criteria may be developed that can be used in decision‐making for management of flows. In our example application, we evaluate both the general response of brook trout (Salvelinus fontinalis) abundances (and fish diversity) to changes in flows and assess the sensitivity of each stream fish community to flow alteration. Mapping stream sensitivity to flow alteration throughout the US Great Lakes Region with a multiscale spatial framework showed how regional variability in sensitivity for any fish species or assemblage may be evaluated and provides managers with information to help determine where the best opportunities for protection or restoration of streamflows and associated communities exist. These results provide valuable tools and critical information to managers responsible for balancing water uses and maintaining high quality lotic ecosystems. These methods may be applied to any geographic region and can be extended nationally or globally, where flow, temperature, fish and landscape data are available. [ABSTRACT FROM AUTHOR]

Managing the world's largest and most complex freshwater ecosystem, the Laurentian Great Lakes, requires.! spatially hierarchical basin-wide database of ecological and socioeconomic information that is comparable across the region. To meet such .1 need, we developed a spatial clarification framework and database Great Lakes Aquatic Habitat Framework (GLAHF). OLAHF consists of catchments, coastal terrestrial, coastal margin, near-shore, and offshore zones that encompass the entire Great Lake Basin. The catchments captured in the database as river pour points or coastline segments are attributed with data known to influence physicochemical and biological characteristics of the lakes, from the catchments. I he coastal terrestrial zone consists of 30 m grid alls attributed with data from the terrestrial region that has direct connection with the lakes. The coastal margin and nearshore zones consist of 30-rn grid cells attributed with data describing the coastline conditions, coastal human distubances, and moderarely to highly variable physicochemical and biological characteristics, The offshore zone consists of 1,8-km grid cells attributed with data that are spatially less variable compared with the other aquatic zones. These spatial classification zones and their associated data are nested within lake sub-basins and political boundaries and allow the synthesis of information from grid cells to classification zones, within and among political boundaries, lake sub basins. Great Lakes. or within the entire Grear Lakes. Basin This spatially structured database could help the development of basin-wide management plan?, prioritize locations for funding and specific management actions, track protection and restoration progress, and conduct research for science-based decision making. [ABSTRACT FROM AUTHOR]

In 2005, 2008, and 2009, eggs were collected for analysis of total thiamine from 2, 58, and 30 gravid rainbow smelt (Osmerus mordax) captured in Edgewater Creek, Owasco Lake, New York, respectively. Mean egg thiamine concentrations (nmol/g ± standard error) in 2005, 2008, and 2009 were 6.0 ± 1.8, 13,3 ± 0.5, and 14.9 ± 0.2, respectively. Eggs from three more females in 2009 were manually spawned, fertilized, and incubated in the laboratory until they hatched on day 11. The mean thiamine concentration in these eggs was 2.7 ± 0.3 nmol/g. To detect possible thiamine deficiency, on day 12 larvae from each female were divided into two groups and immersed in either static culture water alone or the same water with 5,000 mg/L thiamine for 6 hrs, after which they were held as six individual groups and fed twice daily starting on day 23 until all control larvae had died on day 29. Thiamine treatment significantly (P<0.00l) increased survival of unfed larvae between days 15 and 18 and fed larvae between days 24 and 29 (P<0.05). While most smelt captured in 2008 and 2009 contained adequate egg thiamine, some produced eggs low in thiamine, resulting in increased mortality of their fry, which was reduced by treatment with thiamine. [ABSTRACT FROM AUTHOR]

Walleyes Sander vitreus are stocked into Owasco Lake, New York, to provide a sport fisher, but the population must be sustained by annual hatchery supplementation despite the presence of appropriate habitat. Therefore, we evaluated walleye spawning success in Dutch Hollow Brook, a tributary of Owasco Lake, to determine whether early survival limited recruitment. Spawning success during spring 2006 and 2007 was evaluated by estimating egg densities from samples collected in the lower 725 m of the stream. Environmental variables were also recorded to characterize the selected spawning habitat. Drift nets were set downstream of the spawning section to assess egg survival and larval drift. We estimated that 162,596 larvae hatched in 2006. For 2007, we estimated that 360.026 eggs were deposited, with a hatch of 127,500 larvae and hatching success of 35.4%. Egg density was significantly correlated to percent cover, substrtae type, and depth : velocity ratio. Two sections had significantly higher egg deposition than other areas. Adult spawning walleyes selected shallow, slow habitats with some cover and gravel substrate in the accessible reaches of Dutch Hollow Brook. Our results show that walleyes found suitable spawning habitat in Dutch Hollow Brook and that egg and larval development does not appear to limit natural reproduction. [ABSTRACT FROM AUTHOR]

Expansion of the invasive round goby Apollonia melanostoma (=Neogobius melanostomus) throughout the Great Lakes drainage has created considerable concern among fisheries management agencies. These concerns have led to several studies on the biology and impact of the goby in the basin. However, little information exists on diel patterns in food consumption of the round goby. We examined the diets of 300 round gobies collected during crepuscular, diurnal, and nocturnal periods in Lake Ontario. There was little variation in the die! diet composition of the goby, as chironomid larvae were the major prey consumed during each period. Feeding intensity of the round goby was significantly (P<0.05) greater at night than during crepuscular or diurnal periods. [ABSTRACT FROM AUTHOR]

Water-level and associated variability are substantial influences on wetland and shallow aquatic communities. The Akwesasne Wetland Complex is an extensive St. Lawrence River system affected by water regulation. The responses of fish assemblages to short-term summer water-level variation were examined throughout this section of the St. Lawrence River and its tributaries. An influence of water-level variability was detected on abundance of three common species [bluntnose minnow (Pimephales notatus), rock bass (Amboplites rupestris), and white sucker (Catastomus commersonii)} and explained 30 - 44% of variation. This influence has implications for water regulation and natural resource management, and a larger scope evaluation may reveal more extensive effects. [ABSTRACT FROM AUTHOR]

I compared fish assemblages captured in three different microhabitats (shoreline, pelagic near-shore, and benthic near-shore) during day and night fishing in different protection (inside bay or tributary vs. outside in Lake Ontario proper) and turbidity regimes of four near-shore areas of Lake Ontario. The effects of diel movement and availability to gear were clearly evident. Fish assemblages were consistently and significantly more diverse at night than during the day, with nighttime assemblages often being supersets of daytime assemblages. Evidence for a turbidity effect was much weaker than the effects of nocturnal movements and changes in availability to the gear associated with darkness. Nighttime sampling is more likely to capture the full array of species in near-shore areas of the Great Lakes than daytime sampling. [ABSTRACT FROM AUTHOR]

Diel patterns of downstream drift were examined during mid-June in three tributaries of Lake Ontario. Larval fishes were collected in drift nets that were set in each stream for 72 consecutive hours and emptied at 4-h intervals. Fantail darter (Ethostoma flabellare) and blacknose dace (Rhinichthys atractulus) were the two most abundant native stream fishes and were two of the three species collected in the ichthyoplankton drift. Fantail darter larvae comprised 100%, 98.9%, and 70.2% of the ichthyoplankton in the three streams. Most larval fishes (96%) drifted at night with peak catches occurring at 2400h in Orwell Brook and Trout Brook and 0400h in Little Sandy Creek. Based on stream temperatures, peak spawning and larval drift of blacknose dace probably occurred later in the season. [ABSTRACT FROM AUTHOR]

We examined the growth characteristics of 303 Atlantic sturgeon, Acipenser oxyrinchus, caught in the commercial fishery off the New Jersey coast from 1992 to 1994 (fork length range: 93-219 cm). Sections taken from the leading pectoral fin ray were used to age each sturgeon. Ages ranged from 5-26 years. Von Bertalanffy growth models for males and females fit well, but test statistics (t-test, maximum likelihood) failed to reject the null hypothesis that growth was not significantly different between sexes. Consequently, all data were pooled and the combined data gave L∞ and K estimates of 174.2 cm and 0.144, respectively. Our growth data do not fit the pattern of slower growth and increased size in more northernly latitudes for Atlantic sturgeon observed in other work. Lack of uniformity of our growth data may be due to (1) the sturgeon fishery harvesting multiple stocks having different growth rates, and (2) size limits for the commercial fishery having created a bias in estimating growth parameters. [ABSTRACT FROM AUTHOR]

Three Pacific salmonid species Onchorynchus spp. have replaced the extirpated Atlantic salmon Salmo salar as the main migratory salmonid in the Lake Ontario drainage. One of those species, the nonnative rainbow trout O. mykiss, has become widely distributed within the historical Atlantic salmon habitat, occupying an ecological niche similar to that of juvenile Atlantic salmon. Consequently, both a tributary's carrying capacity for Atlantic salmon and competition from established nonnative species are important when considering the feasibility of Atlantic salmon restoration. Estimation of juvenile rainbow trout production will help evaluate the capacity of tributaries to produce salmonids that occupy similar niches. Geostatistical methods were applied to standardized and efficiency-corrected electrofishing data from three of New York's best salmonid-producing streams to precisely estimate juvenile rainbow trout populations. Results indicated that each study stream could produce 20,000-40,000 age-0 and 4,000-10,000 age-1 and older rainbow trout per year. Statistical interpolation indicated areas of significantly different production potential and points of significant changes in productivity. Closer examination of the niche similarity and competitive potential of these two species is needed to properly interpret these estimates with regard to Atlantic salmon restoration. [ABSTRACT FROM AUTHOR]

Compares the changes in community production in a well established wetland with that of a restored site at the Montezuma National Wildlife Refuge in New York. Role of wetlands in the natural ecosystems; Features of the Montezuma Refuge management plan; Contributions of aquatic and terrestrial components of production to the wetland system.

Fish assemblages from three of the New York Finger Lakes were examined for structure within and between lakes and over time. Species-area relationships indicated that local fish assemblages are the result of recent, lake-specific events that altered the regional species pool. Fish assemblages varied among seasons and those occupying eutrophic waters had different characteristics from those in oligotrophic waters. Bluntnose minnows (Pimephales notatus) were a persistent and important component of most assemblages, but abundance of bluegill (Lepomis macrochirus) was the most distinguishing feature. Species associations indicated that interactions among the fishes had little influence on assemblage structure. Correlations between community structure and abiotic factors were identified. Ten abiotic variables were strongly associated with the species assemblages, but could not fully explain differences between assemblages. Results indicate that the abundance and diversity of water column feeders was related to productivity of lake habitat. In general, fish populations were smaller in oligotrophic waters and water column feeders were poorly represented in those assemblages. Productivity at various trophic levels was implicated as a major factor determining lake fish assemblage structure. [ABSTRACT FROM AUTHOR]