361 results on '"McDonald SA"'
Search Results
2. European data sources for computing burden of (potential) vaccine-preventable diseases in ageing adults
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Méroc E, Fröberg J, Almasi T, Winje BA, Orrico-Sánchez A, Steens A, McDonald SA, Bollaerts K, and Knol MJ
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Infectious disease ,Public health ,Elderly ,Burden of disease ,Vaccine - Abstract
BackgroundTo guide decision-making on immunisation programmes for ageing adults in Europe, one of the aims of the Vaccines and InfecTious diseases in the Ageing popuLation (IMI2-VITAL) project is to assess the burden of disease (BoD) of (potentially) vaccine-preventable diseases ((P)VPD). We aimed to identify the available data sources to calculate the BoD of (P)VPD in participating VITAL countries and to pinpoint data gaps. Based on epidemiological criteria and vaccine availability, we prioritized (P) VPD caused by Extra-intestinal pathogenic Escherichia coli (ExPEC), norovirus, respiratory syncytial virus, Staphylococcus aureus, and pneumococcal pneumonia.MethodsWe conducted a survey on available data (e.g. incidence, mortality, disability-adjusted life years (DALY), quality-adjusted life years (QALY), sequelae, antimicrobial resistance (AMR), etc.) among national experts from European countries, and carried out five pathogen-specific literature reviews by searching MEDLINE for peer-reviewed publications published between 2009 and 2019.ResultsMorbidity and mortality data were generally available for all five diseases, while summary BoD estimates were mostly lacking. Available data were not always stratified by age and risk group, which is especially important when calculating BoD for ageing adults. AMR data were available in several countries for S. aureus and ExPEC.ConclusionThis study provides an exhaustive overview of the available data sources and data gaps for the estimation of BoD of five (P) VPD in ageing adults in the EU/EAA, which is useful to guide pathogen-specific BoD studies and contribute to calculation of (P)VPDs BoD.
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- 2021
3. Burden of Disease Methods: A Guide to Calculate COVID-19 Disability-Adjusted Life Years
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Wyper, GMA, Assuncao, RMA, Colzani, E, Grant, I, Haagsma, Juanita, Lagerweij, G, Von der Lippe, E, McDonald, SA, Pires, SM, Porst, M, Speybroeck, N, Devleesschauwer, B, Wyper, GMA, Assuncao, RMA, Colzani, E, Grant, I, Haagsma, Juanita, Lagerweij, G, Von der Lippe, E, McDonald, SA, Pires, SM, Porst, M, Speybroeck, N, and Devleesschauwer, B
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- 2021
4. Estimating the asymptomatic proportion of SARS-CoV-2 infection in the general population: Analysis of a nationwide serosurvey in the Netherlands
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McDonald, SA, primary, Miura, F, additional, Vos, ERA, additional, Boven, M van, additional, de Melker, H, additional, van der Klis, F, additional, van Binnendijk, R, additional, Hartog, G den, additional, and Wallinga, J, additional
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- 2021
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5. Adjusting for comorbidity in incidence-based DALY calculations: an individual-based modeling approach
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McDonald, SA, Haagsma, Juanita, Cassini, A, Devleesschauwer, B, McDonald, SA, Haagsma, Juanita, Cassini, A, and Devleesschauwer, B
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- 2020
6. Impact of infectious diseases on population health using incidence-based disability-adjusted life years (DALYs): results from the Burden of Communicable Diseases in Europe study, European Union and European Economic Area countries, 2009 to 2013
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Cassini, A, Colzani, E, Pini, A, Mangen, MJJ, Plass, D, McDonald, SA, Maringhini, G, van Lier, A, Haagsma, Juanita, Havelaar, AH, Kramarz, P, Kretzschmar, ME, Cassini, A, Colzani, E, Pini, A, Mangen, MJJ, Plass, D, McDonald, SA, Maringhini, G, van Lier, A, Haagsma, Juanita, Havelaar, AH, Kramarz, P, and Kretzschmar, ME
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- 2018
7. Three-dimensional crack observation, quantification and simulation in a quasi-brittle material
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Mostafavi, M, Baimpas, N, Tarleton, E, Atwood, R, McDonald, SA, Korsunsky, A, and Marrow, T
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Strain energy release rate ,Materials science ,Polymers and Plastics ,Metals and Alloys ,Crack tip opening displacement ,Fracture mechanics ,Crack growth resistance curve ,Electronic, Optical and Magnetic Materials ,Crack closure ,Cohesive zone model ,Fracture toughness ,Ceramics and Composites ,Composite material ,Compact tension specimen - Abstract
To investigate the fracture behaviour of polygranular graphite (a quasi-brittle material), crack propagation in a short bar chevron notched specimen was studied by synchrotron X-ray computed tomography combined with digital volume correlation. Displacements were measured within the loaded test specimen, particularly the three-dimensional (3-D) profile of crack opening displacement. Analysis of the 3-D displacement field confirmed the existence of distributed damage in a fracture process zone, which significantly increased the effective crack length. Finite element simulations affirmed that the measured crack opening profiles could be reproduced using a cohesive zone model, but not with a linear elastic analysis. Comparing the simulation to the experimental results, it was deduced that the critical strain energy release rate varied across the crack front, i.e. the fracture toughness is constraint-dependent. This is proposed to be a general characteristic of quasi-brittle materials. Copyright 2013 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved.
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- 2013
8. A Software Tool for Estimation of Burden of Infectious Diseases in Europe Using Incidence-Based Disability Adjusted Life Years
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Colzani, E, Cassini, A, Lewandowski, D, Mangen, MJJ, Plass, D, McDonald, SA, van Lier, A, Haagsma, Juanita, Maringhini, G, Pini, A, Kramarz, P, Kretzschmar, ME, Colzani, E, Cassini, A, Lewandowski, D, Mangen, MJJ, Plass, D, McDonald, SA, van Lier, A, Haagsma, Juanita, Maringhini, G, Pini, A, Kramarz, P, and Kretzschmar, ME
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- 2017
9. Methylation and Clonality of Human Colonic Crypts
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Graham, TA, Humphries, A, McDonald, SA, Leedham, S, and Wright, NA
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- 2016
10. Analysis of the clonal architecture of the human small intestinal epithelium establishes a common stem cell for all lineages and reveals a mechanism for the fixation and spread of mutations
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Gutierrez-Gonzalez, L, Deheragoda, M, Elia, G, Leedham, SJ, Shankar, A, Imber, C, Jankowski, JA, Turnbull, DM, Novelli, M, Wright, NA, and McDonald, SA
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digestive, oral, and skin physiology ,digestive system ,digestive system diseases - Abstract
Little is known about the clonal structure or stem cell architecture of the human small intestinal crypt/villus unit, or how mutations spread and become fixed. Using mitochondrial DNA (mtDNA) mutations as a marker of clonal expansion of stem cell progeny, we aimed to provide answers to these questions. Enzyme histochemistry (for cytochrome c oxidase and succinate dehydrogenase) was performed on frozen sections of normal human duodenum. Laser-capture microdissected cells were taken from crypts/villi. The entire mitochondrial genome was amplified using a nested PCR protocol; sequencing identified mutations and immunohistochemistry demonstrated specific cell lineages. Cytochrome c oxidase-deficient small bowel crypts were observed within all sections: negative crypts contained the same clonal mutation and all differentiated epithelial lineages were present, indicating a common stem cell origin. Mixed crypts were also detected, confirming the existence of multiple stem cells. We observed crypts where Paneth cells were positive but the rest of the crypt was deficient. We have demonstrated patches of deficient crypts that shared a common mutation, suggesting that they have divided by fission. We have shown that all cells within a small intestinal crypt are derived from one common stem cell. Partially-mutated crypts revealed some novel features of Paneth cell biology, suggesting that either they are long-lived or a committed Paneth cell-specific long-lived progenitor was present. We have demonstrated that mutations are fixed in the small bowel by fission and this has important implications for adenoma development.
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- 2016
11. Shear cracking in an Al powder compact studied by X-ray microtomography (vol 508, pg 64, 2009)
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McDonald, SA, Motazedian, F, Cocks, ACF, and Withers, PJ
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- 2016
12. Disease Burden of 32 Infectious Diseases in the Netherlands, 2007-2011
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Van Lier, A, Mcdonald, Sa, Bouwknegt, M, Van Der Sande, M, Bijkerk, P, Van Benthem, B, Hahne, S, Van Der Hoek, W, Van Pelt, W, Heijne, J, Van Den Broek, I, De Coul, Eo, Van Der Maas, N, Brandsema, P, Slump, E, Knol, M, Friesema, I, Brooke, J, Haagsma, J, De Wit, A, Kramer, A, Pinheiro, P, Plass, D, Fevre, E, Gibbons, C, Franco, E, Longhi, S, Ricciardi, W, De Waure, C, Jahn, B, Muhlberger, N, Siebert, U, Lai, T, Matsi, A, Ruutel, K, Cassini, A, Colzani, E, Kramarz, P, Havelaar, A, Kretzschmar, M, Mangen, M, Erkens, C, Swaan, C, Achterberg, P, Land, J, Havelaar, Ah, Wallinga, J, De Melker, He, LS Theoretische Epidemiologie, LS IRAS VPH MBR (microbiol.risico sch.), and dIRAS RA-I&I RA
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0301 basic medicine ,Bacterial Diseases ,Male ,Viral Diseases ,Salmonellosis ,Pulmonology ,Respiratory Tract Diseases ,lcsh:Medicine ,Disease ,Meningococcal Disease ,Chlamydia Infection ,0302 clinical medicine ,Cost of Illness ,Epidemiology ,Medicine and Health Sciences ,Medicine ,Public and Occupational Health ,030212 general & internal medicine ,Non-U.S. Gov't ,lcsh:Science ,Netherlands ,education.field_of_study ,Multidisciplinary ,Bacterial Gastroenteritis ,Research Support, Non-U.S. Gov't ,Vaccination ,Waterborne diseases ,Middle Aged ,Gastroenteritis ,Infectious Diseases ,Shigellosis ,Settore MED/42 ,Female ,Research Article ,Neglected Tropical Diseases ,Adult ,medicine.medical_specialty ,030106 microbiology ,Population ,Sexually Transmitted Diseases ,Gastroenterology and Hepatology ,Research Support ,Measles ,Communicable Diseases ,Aged ,Food ,Humans ,Young Adult ,03 medical and health sciences ,Environmental health ,Journal Article ,education ,Disease burden ,business.industry ,Public health ,lcsh:R ,Calicivirus Infection ,medicine.disease ,Tropical Diseases ,Infectious disease (medical specialty) ,Immunology ,Respiratory Infections ,lcsh:Q ,business - Abstract
BACKGROUND: Infectious disease burden estimates provided by a composite health measure give a balanced view of the true impact of a disease on a population, allowing the relative impact of diseases that differ in severity and mortality to be monitored over time. This article presents the first national disease burden estimates for a comprehensive set of 32 infectious diseases in the Netherlands. METHODS AND FINDINGS: The average annual disease burden was computed for the period 2007-2011 for selected infectious diseases in the Netherlands using the disability-adjusted life years (DALY) measure. The pathogen- and incidence-based approach was adopted to quantify the burden due to both morbidity and premature mortality associated with all short and long-term consequences of infection. Natural history models, disease progression probabilities, disability weights, and other parameters were adapted from previous research. Annual incidence was obtained from statutory notification and other surveillance systems, which was corrected for under-ascertainment and under-reporting. The highest average annual disease burden was estimated for invasive pneumococcal disease (9444 DALYs/year; 95% uncertainty interval [UI]: 8911-9961) and influenza (8670 DALYs/year; 95% UI: 8468-8874), which represents 16% and 15% of the total burden of all 32 diseases, respectively. The remaining 30 diseases ranked by number of DALYs/year from high to low were: HIV infection, legionellosis, toxoplasmosis, chlamydia, campylobacteriosis, pertussis, tuberculosis, hepatitis C infection, Q fever, norovirus infection, salmonellosis, gonorrhoea, invasive meningococcal disease, hepatitis B infection, invasive Haemophilus influenzae infection, shigellosis, listeriosis, giardiasis, hepatitis A infection, infection with STEC O157, measles, cryptosporidiosis, syphilis, rabies, variant Creutzfeldt-Jakob disease, tetanus, mumps, rubella, diphtheria, and poliomyelitis. The very low burden for the latter five diseases can be attributed to the National Immunisation Programme. The average disease burden per individual varied from 0.2 (95% UI: 0.1-0.4) DALYs per 100 infections for giardiasis, to 5081 and 3581 (95% UI: 3540-3611) DALYs per 100 infections for rabies and variant Creutzfeldt-Jakob disease, respectively. CONCLUSIONS: For guiding and supporting public health policy decisions regarding the prioritisation of interventions and preventive measures, estimates of disease burden and the comparison of burden between diseases can be informative. Although the collection of disease-specific parameters and estimation of incidence is a process subject to continuous improvement, the current study established a baseline for assessing the impact of future public health initiatives.
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- 2016
13. Cost of Treatment for Chronic Hepatitis C Infection at a National Tertiary-Care Referral Centre in an Asian Middle-Income Country
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Azzeri, A, primary, Shabaruddin, FH, additional, Mohamed, R, additional, McDonald, SA, additional, Tan, SS, additional, Kamarulzaman, A, additional, and Dahlui, M, additional
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- 2017
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14. Clinical Characteristics Of Patients With Chronic Hepatitis C Infection At Initial Presentation To Tertiary Care In An Asian Middle-Income Country
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Azzeri, A, primary, Shabaruddin, FH, additional, Tan, SS, additional, McDonald, SA, additional, Dahlui, M, additional, Kamarulzaman, A, additional, and Mohamed, R, additional
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- 2017
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15. Methodological Framework for World Health Organization Estimates of the Global Burden of Foodborne Disease
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Devleesschauwer, B, Haagsma, Juanita, Angulo, FJ, Bellinger, DC, Cole, D, Dopfer, D, Fazil, A, Fevre, EM, Gibb, HJ, Hald, T, Kirk, MD, Lake, RJ, de Noordhout, CM, Mathers, CD, McDonald, SA, Pires, SM, Speybroeck, N, Thomas, MK, Torgerson, PR, Wu, F, Havelaar, AH, Praet, N, Devleesschauwer, B, Haagsma, Juanita, Angulo, FJ, Bellinger, DC, Cole, D, Dopfer, D, Fazil, A, Fevre, EM, Gibb, HJ, Hald, T, Kirk, MD, Lake, RJ, de Noordhout, CM, Mathers, CD, McDonald, SA, Pires, SM, Speybroeck, N, Thomas, MK, Torgerson, PR, Wu, F, Havelaar, AH, and Praet, N
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Background The Foodborne Disease Burden Epidemiology Reference Group (FERG) was established in 2007 by the World Health Organization to estimate the global burden of foodborne diseases (FBDs). This paper describes the methodological framework developed by FERG's Computational Task Force to transform epidemiological information into FBD burden estimates. Methods and Findings The global and regional burden of 31 FBDs was quantified, along with limited estimates for 5 other FBDs, using Disability-Adjusted Life Years in a hazard-and incidence-based approach. To accomplish this task, the following workflow was defined: outline of disease models and collection of epidemiological data; design and completion of a database template; development of an imputation model; identification of disability weights; probabilistic burden assessment; and estimating the proportion of the disease burden by each hazard that is attributable to exposure by food (i.e., source attribution). All computations were performed in R and the different functions were compiled in the R package 'FERG'. Traceability and transparency were ensured by sharing results and methods in an interactive way with all FERG members throughout the process. Conclusions We developed a comprehensive framework for estimating the global burden of FBDs, in which methodological simplicity and transparency were key elements. All the tools developed have been made available and can be translated into a user-friendly national toolkit for studying and monitoring food safety at the local level.
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- 2015
16. Impact of measles national vaccination coverage on burden of measles across 29 Member States of the European Union and European Economic Area, 2006-2011
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Colzani, E, Mcdonald, S, Carrillo Santisteve, P, Busana, M, Lopalco, P, Cassini, A, COLZANI, EDOARDO, McDonald, SA, Busana, MC, Cassini, A., Colzani, E, Mcdonald, S, Carrillo Santisteve, P, Busana, M, Lopalco, P, Cassini, A, COLZANI, EDOARDO, McDonald, SA, Busana, MC, and Cassini, A.
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Background: Challenges in reaching good vaccination coverage against measles emerged in several European Union/European Economic Area Member States (EU/EEA MS) leading to progressive accumulation of susceptible individuals and outbreaks. The Burden of Communicable Diseases in Europe (BCoDE) project developed a methodology for measuring the burden of communicable diseases expressed in Disability-Adjusted Life Years (DALYs) in the EU/EEA MS. The aim of this study was to compare national vaccination coverage and burden of measles across EU/EEA MS. Methods: Country-specific data on measles national vaccination coverage 2006-2011 from 29 EU/EEA MS (MCV1) were retrieved from Centralized Information System for Infectious Diseases (CISID). DALYs were calculated for each country separately using a disease progression model with a single input parameter (annual measles incidence, adjusted for under-estimation). A software application was used to compute estimated DALYs according to country-specific and year-specific population age-distributions (data retrieved from Eurostat). Log-linear mixed-effect regression modeling approach was used to investigate a linear relation between natural logarithm-transformed DALYs and coverage. Results: The reported annual vaccination coverage ranged from 72.6% to 100%. The estimated national annual burden ranged from 0 to 30.6 DALYs/100,000. Adjusting for year, there was a significant negative relationship between coverage and burden. For a given country there was a decrease in log-transformed DALYs/100,000 of 0.025 (95% confidence interval: -0.047 to -0.003) for every percentage increase in vaccination coverage. The largest effect of calendar time on estimated burden of measles was observed for the year 2011, the smallest was for the year 2007. Conclusions: This study shows that the degree of success of national measles vaccination programs, when measured by the coverage obtained, is significantly associated with overall impact of measles acr
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- 2014
17. PGI13 - Cost of Treatment for Chronic Hepatitis C Infection at a National Tertiary-Care Referral Centre in an Asian Middle-Income Country
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Azzeri, A, Shabaruddin, FH, Mohamed, R, McDonald, SA, Tan, SS, Kamarulzaman, A, and Dahlui, M
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- 2017
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18. PGI6 - Clinical Characteristics Of Patients With Chronic Hepatitis C Infection At Initial Presentation To Tertiary Care In An Asian Middle-Income Country
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Azzeri, A, Shabaruddin, FH, Tan, SS, McDonald, SA, Dahlui, M, Kamarulzaman, A, and Mohamed, R
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- 2017
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19. The stomach periglandular fibroblast sheath: all present and correct
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Leedham, S, Brittan, M, Preston, S, McDonald, SA, and Wright, N
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- 2006
20. X-ray microtomography imaging of Ti-SiC composites
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Mcdonald, Sa, Preuss, M., Maire, Eric, Buffiere, Jean-Yves, Mummery, Pm, Withers, P.J., Matériaux, ingénierie et science [Villeurbanne] (MATEIS), Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA), and Mateis, Laboratoire
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[SPI.MAT] Engineering Sciences [physics]/Materials ,ComputingMilieux_MISCELLANEOUS ,[SPI.MAT]Engineering Sciences [physics]/Materials - Abstract
International audience
- Published
- 2003
21. Improving the usability and communication of burden of disease methods and outputs: the experience of the Burden of Communicable Diseases in Europe software toolkit
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Cassini, A, Colzani, E, Lewandowski, D, Mangen, M, Scott McDonald, S, Plass, D, Kramarz, P, Kretzschmar, M, Mangen, MJ, Scott McDonald, SA, Kretzschmar, ME, Cassini, A, Colzani, E, Lewandowski, D, Mangen, M, Scott McDonald, S, Plass, D, Kramarz, P, Kretzschmar, M, Mangen, MJ, Scott McDonald, SA, and Kretzschmar, ME
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Background The Burden of Communicable Diseases in Europe (BCoDE) is a project led and funded by the European Centre for Disease Prevention and Control (ECDC) and by a European consortium with the purpose of estimating the impact of communicable diseases (CDs) expressed in disability-adjusted life-years (DALYs) in the European Union and the European Economic Area member states (MS). Methods In order to facilitate use and understanding of the burden of disease methodology, software with a user-friendly interface has been developed, the BCoDE toolkit. The application is written in C++ using Qt C++ toolkit, version 4.8.4. All computations are implemented in C++ and the interface is html with JavaScript. Each selected disease generates a model visible as a graphical outcome tree. By default, users input country-specific notified data (optional The European Surveillance System [TESSy] data source) and age-specific and sex-specific multiplication factors adjusting for underestimation. At will, the user is also allowed to edit population data as well as parameters of the outcome tree. Findings BCoDE toolkit outputs are disease specific and include impact of acute illness versus sequelae, sex-specific and age-specific DALYs with uncertainty intervals, years of life lost due to premature mortality, and years lived with disability. Aggregated results are displayed as bubble charts (DALYs per 100 000 population) plotted against mortality, incidence, and DALYs per case. Interactive tables and bar charts ranking diseases and uncertainty can be produced and exported. Interpretation The BCoDE toolkit is being distributed to national experts to allow the estimation of national burden of CDs. The aim of the software is to assist MS in applying the proposed BCoDE evidence-based approach for estimation of the burden of CDs, and to facilitate communication between data generators and users through multiple visualisation options, ultimately fostering its value in health policy formulatio
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- 2013
22. Effects of an ageing population and the replacement of immune birth cohorts on the burden of hepatitis A in the Netherlands
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Mcdonald, S, Mangen, M, Suijkerbuijk, A, Colzani, E, Kretzschmar, M, McDonald, SA, Mangen, MJ, COLZANI, EDOARDO, Kretzschmar, ME, Mcdonald, S, Mangen, M, Suijkerbuijk, A, Colzani, E, Kretzschmar, M, McDonald, SA, Mangen, MJ, COLZANI, EDOARDO, and Kretzschmar, ME
- Abstract
Background: In populations in which the incidence of hepatitis A virus (HAV) infection has declined due to socio-economic improvements, better sanitation and hygiene, and vaccination, birth cohorts who have long-term immunity through exposure early in life are now being replaced by non-immune cohorts, meaning that more cases in the elderly may occur in future. Our goal was to qualitatively investigate the interaction of this cohort effect and demographic change (population ageing) on the estimated disease burden of HAV infection in the Netherlands.Methods: We used dynamic MSIR (maternal immunity-susceptible-infectious-recovered) transmission and demographic models to simulate annual HAV incidence over the period 2000-2030, and estimated disease burden using the disability-adjusted life years (DALY) measure and a pre-defined disease progression model. Five scenarios representing different force of infection situations were simulated.Results: The overall disease burden was projected to decrease over the simulation period in the baseline scenario (310 DALYs in 2000 compared with 67 in 2030). This decreasing trend was absent for the 55+ years age group; 23.5% of all new infections were predicted to occur in the 55+ group in 2030, compared with 5.5% in the 55+ group in 2000.Conclusions: In the absence of further public health interventions and under the assumption of a continued steady decline in the force of infection, the HAV disease burden in the Netherlands is predicted to decrease over the coming decades, but with proportionally more of the burden occurring within the increasingly larger segment of the population represented by elderly persons who are no longer naturally immune.
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- 2013
23. The effects of estimating a photoionization parameter within a physics-based model using data assimilation
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Hodyss Daniel, Allen Douglas R., Tyndall Daniel, Caffrey Peter, and McDonald Sarah E.
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specification ,data assimilation ,kalman filter ,ensemble kalman filter ,parameter estimation ,Meteorology. Climatology ,QC851-999 - Abstract
Data assimilation (DA) is the process of merging information from prediction models with noisy observations to produce an estimate of the state of a physical system. In ionospheric physics-based models, the solar ionizing irradiance is commonly estimated from a solar index like F10.7. The goal of this work is to provide the fundamental understanding necessary to appreciate how a DA algorithm responds to estimating an external parameter driving the model’s interpretation of this solar ionizing irradiance. Therefore, in this work we allow the DA system to find the F10.7 value that delivers the degree of photoionization that leads to a predicted electron density field that best matches the observations. To this end, we develop a heuristic model of the ionosphere along the magnetic equator that contains physics from solar forcing and recombination/plasma diffusion, which allows us to explore the impacts of strongly forced system dynamics on DA. This framework was carefully crafted to be both linear and Gaussian, which allows us to use a Kalman filter to clearly see how: (1) while recombination acts as a sink on the information in the initial condition for ionospheric field variables, recombination does not impact the information in parameter estimates in the same way, (2) when solar forcing dominates the electron density field, the prior covariance matrix becomes dominated by its leading eigenvector whose structure is directly related to that of the solar forcing, (3) estimation of parameters for forcing terms leads to a time-lag in the state estimate relative to the truth, (4) the performance of a DA system in this regime is determined by the relative dominance of solar forcing and recombination to that of the smaller-scale processes and (5) the most impactful observations on the electron density field and on the solar forcing parameter are those observations on the sunlit side of the ionosphere. These findings are then illustrated in a full physics-based ionospheric model using an ensemble Kalman filter DA scheme.
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- 2023
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24. Low latitude monthly total electron content composite correlations
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Allen Douglas R., Hodyss Daniel, Forsythe Victoriya V., and McDonald Sarah E.
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total electron content ,data assimilation ,correlations ,ionosphere ,modeling ,Meteorology. Climatology ,QC851-999 - Abstract
Spatial correlations of total electron content (TEC) variability are compared among two SAMI3 model runs and Jet Propulsion Laboratory Global Ionospheric Maps (JPL/GIM). Individual monthly correlation maps are constructed with Equatorial reference points at 12 evenly spaced longitudes and 12 universal times. TEC composite correlations (TCCs) are then calculated by averaging the individual maps, shifted zonally to synchronize local time. The TCC structures are quantified using Gaussian fits in the zonal and meridional directions. A non-zero large-scale “base correlation” is found in all three datasets for 2014, a year with high solar activity. Higher base correlations generally occur in the SAMI3 runs than in JPL/GIM. The SAMI3 run driven with climatological neutral fields shows higher correlations than the run driven with neutrals from a Whole Atmosphere Community Climate Model with thermosphere–ionosphere eXtension (WACCM-X) simulation. Base correlation values strongly correlate with monthly F10.7 standard deviations. Empirical orthogonal function (EOF) analyses confirm that large-scale correlations are usually, although not always, related to solar forcing. Strong correlations between the Ap index and EOF modes are also observed, consistent with the geomagnetic forcing of the TEC field. The widths of the correlation structures are also examined, and these vary considerably with local time, month, and dataset. Off-Equator conjugate point correlations are also calculated from each dataset and variations with the month and local time are analyzed. Analysis of TCCs for 2010, a year with low solar activity, shows that base correlations as well as correlations of the first EOF mode with F10.7 are generally weaker than in 2014.
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- 2023
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25. Survival and re-admission of patients admitted with alcoholic liver disease to a West of Scotland hospital
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Heydtmann, M, primary and McDonald, SA, additional
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- 2013
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26. Adapting Open-space Learning Techniques to Teach Cultural Literacy
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Ochoa Gabriel García, McDonald Sarah, and Monk Nicholas
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cultural literacy ,open-space learning ,destabilisation ,higher education ,cultural competence ,Social sciences (General) ,H1-99 - Abstract
There is a growing body of work on the theory of cultural literacy, but little has been written on how to teach cultural literacy in higher education contexts. This article discusses the use of Open-space Learning (OSL) techniques as valuable tools for teaching cultural literacy. Cultural literacy and OSL are two different areas of study, but there is common ground between them, and cultural literacy can draw great benefit from the cross-pollination of ideas with OSL. The paper focuses on practice-based models used in OSL that have been adapted to teach cultural literacy. The aim of these practice-based models is to create an environment that teaches students how to transfer the analytical and critical skills that they learn as part of a literary and cultural studies (LCS) course to real-life scenarios. We argue that an important part of this learning environment is what we refer to as cognitive “destabilisation,” and discuss why OSL techniques are ideally suited to fostering such destabilisation in students.
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- 2018
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27. Comprehensive genomic studies: emerging regulatory, strategic, and quality assurance challenges for biorepositories.
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McDonald SA, Mardis ER, Ota D, Watson MA, Pfeifer JD, Green JM, McDonald, Sandra A, Mardis, Elaine R, Ota, David, Watson, Mark A, Pfeifer, John D, and Green, Jonathan M
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As part of the molecular revolution sweeping medicine, comprehensive genomic studies are adding powerful dimensions to medical research. However, their power exposes new regulatory, strategic, and quality assurance challenges for biorepositories. A key issue is that unlike other research techniques commonly applied to banked specimens, nucleic acid sequencing, if sufficiently extensive, yields data that could identify a patient. This evolving paradigm renders the concepts of anonymized and anonymous specimens increasingly outdated. The challenges for biorepositories in this new era include refined consent processes and wording, selection and use of legacy specimens, quality assurance procedures, institutional documentation, data sharing, and interaction with institutional review boards. Given current trends, biorepositories should consider these issues now, even if they are not currently experiencing sample requests for genomic analysis. We summarize our current experiences and best practices at Washington University Medical School, St Louis, MO, our perceptions of emerging trends, and recommendations. [ABSTRACT FROM AUTHOR]
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- 2012
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28. Excess morbidity in the hepatitis C-diagnosed population in Scotland, 1991-2006.
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McDonald SA, Hutchinson SJ, Bird SM, Mills PR, Hayes P, Dillon JF, Goldberg DJ, McDonald, S A, Hutchinson, S J, Bird, S M, Mills, P R, Hayes, P, Dillon, J F, and Goldberg, D J
- Abstract
We estimated the excess risk of in-patient hospitalization in a large cohort of persons diagnosed with hepatitis C virus (HCV) infection, controlling for social deprivation. A total of 20 749 individuals diagnosed with HCV in Scotland by 31 December 2006 were linked to the Scottish hospital discharge database, and indirectly standardized hospitalization rates, adjusting for sex, age, year and deprivation were calculated. We observed significant excess morbidity considering episodes for: any diagnosis [standardized morbidity ratio (SMR) 3·4, 95% CI 3·3-3·5]; liver-related diagnoses (SMR 41·3, 95% CI 39·6-43·0); and only non-liver-related diagnoses (SMR 2·14, 95% CI 2·08-2·19). Cox regression analyses of the 2000-2006 data indicated increased relative risks of hospitalization for males [hazard ratio (HR) 1·1, 95% CI 1·0-1·2], older age (per 10 years) (HR 1·55, 95% CI 1·5-1·6), and those testing HIV-positive (HR 1·6, 95% CI 1·3-1·8). This study has revealed substantial excess all-cause and liver-related morbidity in the Scottish HCV-diagnosed population, even after allowing for deprivation. [ABSTRACT FROM AUTHOR]
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- 2011
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29. Hospitalization of hepatitis C-diagnosed individuals in Scotland for decompensated cirrhosis: a population-based record-linkage study.
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McDonald SA, Hutchinson SJ, Bird SM, Mills PR, Robertson C, Dillon JF, Williams T, Goldberg DJ, McDonald, Scott A, Hutchinson, Sharon J, Bird, Sheila M, Mills, Peter R, Robertson, Chris, Dillon, John F, Williams, Toni, and Goldberg, David J
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- 2010
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30. Outcome of term infants using apgar scores at 10 minutes following hypoxic-ischemic encephalopathy.
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Laptook AR, Shankaran S, Ambalavanan N, Carlo WA, McDonald SA, Higgins RD, Das A, and Hypothermia Subcommittee of the NICHD Neonatal Research Network
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- 2009
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31. A population-based record linkage study of mortality in hepatitis C-diagnosed persons with or without HIV coinfection in Scotland.
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McDonald SA, Hutchinson SJ, Bird SM, Mills PR, Dillon J, Bloor M, Robertson C, Donaghy M, Hayes P, Graham L, McDonald, Scott A, Hutchinson, Sharon J, Bird, Sheila M, Mills, Peter R, Dillon, John, Bloor, Mick, Robertson, Chris, Donaghy, Martin, Hayes, Peter, and Graham, Lesley
- Abstract
Infection with the hepatitis C virus (HCV) is known to increase the risk of death from severe liver disease and, because HCV status is strongly associated with a history of injecting drug use, the effect of a key disease progression cofactor, infection with human immunodeficiency virus (HIV), is of interest. We examined all-cause, liver-related and drug-related mortality and excess risk of death from these causes in a large cohort of HCV-monoinfected and HIV-coinfected persons in Scotland. The study population consisted of 20,163 persons confirmed to be infected with hepatitis C through laboratory testing in Scotland between 1991 and 2005. Records with sufficient identifiers were linked to the General Register Office for Scotland death register to retrieve associated mortality data, and were further linked to a national database of HIV-positive individuals to determine coinfection status. A total of 1715 HCV monoinfected and 305 HIV coinfected persons died of any cause during the follow-up period (mean of 5.4 and 6.4 years, respectively). Significant excess mortality was observed in both HCV monoinfected and HIV coinfected populations from liver-related underlying causes (standardised mortality ratios of 25, 95% CI = 23-27; and 37, 95% CI = 26-52 for the two groups, respectively) and drug-related causes (25, 95% CI = 23-27; 39, 95% CI = 28-53. The risk of death from hepatocellular carcinoma, alcoholic or non-alcoholic liver disease, or from a drug-related cause, was greatly increased compared with the general Scottish population, with the highest standardised mortality ratio observed for hepatocellular carcinoma in the monoinfected group (70, 95% CI = 57-85). This study has revealed considerable excess mortality from liver- and drug-related causes in the Scottish HCV-diagnosed population; these data are crucial to inform on the clinical management, and projected future public health burden, of HCV infection. [ABSTRACT FROM AUTHOR]
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- 2009
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32. Treatment satisfaction and efficacy of the rapid release formulation of sumatriptan 100 mg tablets utilising an early intervention paradigm in patients previously unsatisfied with sumatriptan.
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Newman LC, Cady RK, Landy S, O'Carroll P, Kwong WJ, Burch SP, Nelsen AC, McDonald SA, Newman, L C, Cady, R K, Landy, S, O'Carroll, P, Kwong, W J, Burch, S P, Nelsen, A C, and McDonald, S A
- Abstract
Aims: To evaluate treatment satisfaction, efficacy and functional ability of the rapid release formulation of sumatriptan 100 mg tablets (sumatriptan RT 100 mg) in an early intervention paradigm in patients who were dissatisfied with low-dose sumatriptan and not completely satisfied with their current migraine regimen.Methods: Experienced migraineurs who reported a mild migraine pain phase, dissatisfaction with the previous sumatriptan treatment and some dissatisfaction with their current treatment regimen had no experience with sumatriptan at the 100 mg dose were enrolled in an open-label, single group study. Subjects were instructed to treat four migraine attacks within 30 min of the onset of mild pain. Treatment satisfaction was measured with the Patient Perception of Migraine Questionnaire Revised version (PPMQ-R) questionnaire.Results: More than half of the subjects were either very satisfied or satisfied with the efficacy of early intervention sumatriptan RT 100 mg after each attack and at the follow-up study visit. The mean total PPMQ-R score was 75.2 out of 100. Between 63% and 73% of subjects were pain-free within 4 h of dosing. Between 79% and 90% of subjects reported an ability to function normally within 4 h of taking the study medication.Conclusion: Subjects who were previously unsatisfied with lower doses of sumatriptan and less than very satisfied with their current treatment regimen were more likely to be satisfied or very satisfied with sumatriptan RT 100 mg in an early intervention paradigm. Results were consistent across four migraine attacks and at a follow-up visit. The treatment satisfaction results corresponded with positive results on efficacy measures and a functional status measure. [ABSTRACT FROM AUTHOR]- Published
- 2008
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33. Optokinetic therapy improves text reading in patients with hemianopic alexia: a controlled trial.
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Spitzyna GA, Wise RJ, McDonald SA, Plant GT, Kidd D, Crewes H, Leff AP, Spitzyna, G A, Wise, R J S, McDonald, S A, Plant, G T, Kidd, D, Crewes, H, and Leff, A P
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- 2007
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34. Rethinking the word frequency effect: the neglected role of distributional information in lexical processing.
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McDonald SA and Shillcock RC
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Attempts to quantify lexical variation have produced a large number of theoretical and empirical constructs, such as Word Frequency, Concreteness, and Ambiguity, which have been claimed to predict between-word differences in lexical processing behavior. Models of word recognition that have been developed to account for the effects of these variables have typically lacked adequate semantic representations, and have dealt with words as if they exist in isolation from their environment. We present a new dimension of lexical variation that is addressed to this concern. Contextual Distinctiveness (CD), a corpus-derived summary measure of the frequency distribution of the contexts in which a word occurs, is naturally compatible with contextual theories of semantic representation and meaning. Experiment 1 demonstrates that CD is a significantly better predictor of lexical decision latencies than occurrence frequency, suggesting that CD is the more psychologically relevant variable. We additionally explore the relationship between CD and six subjectively-defined measures: Concreteness, Context Availability, Number of Contexts, Ambiguity, Age of Acquisition and Familiarity and find CD to be reliably related to Ambiguity only. We argue for the priority of immediate context in determining the representation and processing of language. [ABSTRACT FROM AUTHOR]
- Published
- 2001
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35. Synchrotron X-ray study of micromechanics of Ti/SiCf composites with fibres containing defects introduced by laser drilling
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Mcdonald, Sa, Preuss, M, Maire, E, Buffiere, Jean-Yves, Mummery, Pm, Withers, PJ, MAIRE, Eric, Matériaux, ingénierie et science [Villeurbanne] (MATEIS), Centre National de la Recherche Scientifique (CNRS)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), and Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)
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[SPI.MAT] Engineering Sciences [physics]/Materials ,ComputingMilieux_MISCELLANEOUS ,[SPI.MAT]Engineering Sciences [physics]/Materials - Abstract
International audience; no abstract
36. Problem-solving versus cognitive restructuring of medically ill seniors with depression (PROMISE-D trial): study protocol and design
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Sharpe Louise, Gittins Catherine B, Correia Helen M, Meade Tanya, Nicholas Michael K, Raue Patrick J, McDonald Sarah, and Areán Patricia A
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Depression ,Older adults ,Chronic illness ,Cognitive-behavioural therapy ,Problem-solving therapy ,Psychotherapy ,Psychiatry ,RC435-571 - Abstract
Abstract Background With an ageing population in most Western countries, people are living longer but often with one or more chronic physical health problems. Older people in physically poor health are at greater risk of developing clinical depression. Cognitive Behavioural Therapy (CBT) and Problem Solving Therapy (PST) have both been found to be efficacious in treating late-life depression, however patients with “multi-morbidity” (i.e. more than one chronic condition) are often excluded from these trials. The aim of this study is to compare the efficacy of CBT and PST in treating older adults who have one or more chronic physical health conditions and a diagnosable depressive disorder. This study will be the first to explicitly target the treatment of depression in older people in primary care settings presenting with a range of health problems using behavioural interventions. Methods/design The PROMISE-D study is a randomised controlled trial of two evidence-based treatments for late-life major or minor depression for patients who also have at least one co-morbid chronic health problem. Participants will be randomised to two active interventions (PST or CBT) or enhanced treatment-as-usual (E-TAU). Primary outcomes will be depression diagnostic status and severity of depression (according to the Hamilton Depression Rating Scale and the Geriatric Depression Scale). Secondary outcomes will be anxiety severity, quality of life and health care utilisation. Assessments will be conducted by a researcher who remains blind to the patient’s treatment allocation and will be conducted pre and post-treatment and at six and 12 months follow-up. Health care utilisation will be assessed throughout a two year period following entry to the trial. Executive function, rumination and emotion regulation will also be measured to determine the impact of these factors on treatment response in two treatment groups. Discussion Multi-morbidity, the experience of two or more chronic health problems, is becoming an increasing problem internationally, particularly amongst the elderly. Evidence-based psychological treatments exist for late-life depression and these have been shown to be effective for participants with individual health problems and depression. However, there are no studies that have compared the two leading psychotherapies shown to be effective in the treatment of late-life depression. In addition, many trials of psychotherapy with older adults exclude those with multi-morbidity. Hence, this trial will confirm whether CBT and PST are efficacious in the treatment of depression in the context of complex medical needs and determine which of these two interventions is most efficacious. Trial registration ACTRN12612000854831
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- 2012
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37. Evaluating patient values and preferences for thromboprophylaxis decision making during pregnancy: a study protocol
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Alonso-Coello Pablo, Ebrahim Shanil, Guyatt Gordon H, Tikkinen Kari AO, Eckman Mark H, Neumann Ignacio, McDonald Sarah D, Akl Elie A, and Bates Shannon M
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Gynecology and obstetrics ,RG1-991 - Abstract
Abstract Background Pregnant women with prior venous thromboembolism (VTE) are at risk of recurrence. Low molecular weight heparin (LWMH) reduces the risk of pregnancy-related VTE. LMWH prophylaxis is, however, inconvenient, uncomfortable, costly, medicalizes pregnancy, and may be associated with increased risks of obstetrical bleeding. Further, there is uncertainty in the estimates of both the baseline risk of pregnancy-related recurrent VTE and the effects of antepartum LMWH prophylaxis. The values and treatment preferences of pregnant women, crucial when making recommendations for prophylaxis, are currently unknown. The objective of this study is to address this gap in knowledge. Methods We will perform a multi-center cross-sectional interview study in Canada, USA, Norway and Finland. The study population will consist of 100 women with a history of lower extremity deep vein thrombosis (DVT) or pulmonary embolism (PE), and who are either pregnant, planning pregnancy, or may in the future consider pregnancy (women between 18 and 45 years). We will exclude individuals who are on full dose anticoagulation or thromboprophylaxis, who have undergone surgical sterilization, or whose partners have undergone vasectomy. We will determine each participant's willingness to receive LMWH prophylaxis during pregnancy through direct choice exercises based on real life and hypothetical scenarios, preference-elicitation using a visual analog scale (“feeling thermometer”), and a probability trade-off exercise. The primary outcome will be the minimum reduction (threshold) in VTE risk at which women change from declining to accepting LMWH prophylaxis. We will explore possible determinants of this choice, including educational attainment, the characteristics of the women’s prior VTE, and prior experience with LMWH. We will determine the utilities that women place on the burden of LMWH prophylaxis, pregnancy-related DVT, pregnancy-related PE and pregnancy-related hemorrhage. We will generate a “personalized decision analysis” using participants’ utilities and their personalized risk of recurrent VTE as inputs to a decision analytic model. We will compare the personalized decision analysis to the participant’s stated choice. Discussion The preferences of pregnant women at risk of VTE with respect to the use of antithrombotic therapy remain unexplored. This research will provide explicit, quantitative expressions of women's valuations of health states related to recurrent VTE and its prevention with LMWH. This information will be crucial for both guideline developers and for clinicians.
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- 2012
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38. Parental phonological memory contributes to prediction of outcome of late talkers from 20 months to 4 years: a longitudinal study of precursors of specific language impairment
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Bishop Dorothy VM, Holt Georgina, Line Elizabeth, McDonald David, McDonald Sarah, and Watt Helen
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Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Abstract Background Many children who are late talkers go on to develop normal language, but others go on to have longer-term language difficulties. In this study, we considered which factors were predictive of persistent problems in late talkers. Methods Parental report of expressive vocabulary at 18 months of age was used to select 26 late talkers and 70 average talkers, who were assessed for language and cognitive ability at 20 months of age. Follow-up at 4 years of age was carried out for 24 late and 58 average talkers. A psychometric test battery was used to categorize children in terms of language status (unimpaired or impaired) and nonverbal ability (normal range or more than 1 SD below average). The vocabulary and non-word repetition skills of the accompanying parent were also assessed. Results Among the late talkers, seven (29%) met our criteria for specific language impairment (SLI) at 4 years of age, and a further two (8%) had low nonverbal ability. In the group of average talkers, eight (14%) met the criteria for SLI at 4 years, and five other children (8%) had low nonverbal ability. Family history of language problems was slightly better than late-talker status as a predictor of SLI.. The best predictors of SLI at 20 months of age were score on the receptive language scale of the Mullen Scales of Early Learning and the parent's performance on a non-word repetition task. Maternal education was not a significant predictor of outcome. Conclusions In this study, around three-quarters of late talkers did not have any language difficulties at 4 years of age, provided there was no family history of language impairment. A family history of language-literacy problems was found to be a significant predictor for persisting problems. Nevertheless, there are children with SLI for whom prediction is difficult because they did not have early language delay.
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- 2012
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39. Chronic cerebrospinal venous insufficiency in multiple sclerosis: clinical correlates from a multicentre study
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Bastianello Stefano, Romani Alfredo, Viselner Gisela, Tibaldi Enrico, Giugni Elisabetta, Altieri Marta, Cecconi Pietro, Mendozzi Laura, Farina Massimiliano, Mariani Donatella, Galassi Antonio, Quattrini Claudio, Mancini Marcello, Bresciamorra Vincenzo, Lagace Angela, McDonald Sandy, Bono Giorgio, and Bergamaschi Roberto
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Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Abstract Background Chronic cerebrospinal venous insufficiency (CCSVI) has recently been reported to be associated with multiple sclerosis (MS). However, its actual prevalence, possible association with specific MS phenotypes, and potential pathophysiological role are debated. Method We analysed the clinical data of 710 MS patients attending six centres (five Italian and one Canadian). All were submitted to venous Doppler sonography and diagnosed as having or not having CCSVI according to the criteria of Zamboni et al. Results Overall, CCSVI was diagnosed in 86% of the patients, but the frequency varied greatly between the centres. Even greater differences were found when considering singly the five diagnostic criteria proposed by Zamboni et al. Despite these differences, significant associations with clinical data were found, the most striking being age at disease onset (about five years greater in CCSVI-positive patients) and clinical severity (mean EDSS score about one point higher in CCSVI-positive patients). Patients with progressive MS were more likely to have CCSVI than those with relapsing-remitting MS. Conclusion The methods for diagnosing CCSVI need to be refined, as the between-centre differences, particularly in single criteria, were excessively high. Despite these discrepancies, the strong associations between CCSVI and MS phenotype suggest that the presence of CCSVI may favour a later development of MS in patients with a lower susceptibility to autoimmune diseases and may increase its severity.
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- 2011
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40. Outcomes of safety and effectiveness in a multicenter randomized, controlled trial of whole-body hypothermia for neonatal hypoxic-ischemic encephalopathy.
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Shankaran S, Pappas A, Laptook AR, McDonald SA, Ehrenkranz RA, Tyson JE, Walsh M, Goldberg RN, Higgins RD, Das A, and NICHD Neonatal Research Network
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- 2008
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41. How the 2008 stock market crash and seasons affect total and cardiac deaths in los angeles county.
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Schwartz BG, Pezzullo JC, McDonald SA, Poole WK, and Kloner RA
- Published
- 2012
42. Whole-body hypothermia for neonates with hypoxic-ischemic encephalopathy.
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Shankaran S, Laptook AR, Ehrenkranz RA, Tyson JE, McDonald SA, Donovan EF, Fanaroff AA, Poole WK, Wright LL, Higgins RD, Finer NN, Carlo WA, Duara S, Oh W, Cotten CM, Stevenson DK, Stoll BJ, Lemons JA, Guillet R, and Jobe AH
- Abstract
Background: Hypothermia is protective against brain injury after asphyxiation in animal models. However, the safety and effectiveness of hypothermia in term infants with encephalopathy is uncertain.Methods: We conducted a randomized trial of hypothermia in infants with a gestational age of at least 36 weeks who were admitted to the hospital at or before six hours of age with either severe acidosis or perinatal complications and resuscitation at birth and who had moderate or severe encephalopathy. Infants were randomly assigned to usual care (control group) or whole-body cooling to an esophageal temperature of 33.5 degrees C for 72 hours, followed by slow rewarming (hypothermia group). Neurodevelopmental outcome was assessed at 18 to 22 months of age. The primary outcome was a combined end point of death or moderate or severe disability.Results: Of 239 eligible infants, 102 were assigned to the hypothermia group and 106 to the control group. Adverse events were similar in the two groups during the 72 hours of cooling. Primary outcome data were available for 205 infants. Death or moderate or severe disability occurred in 45 of 102 infants (44 percent) in the hypothermia group and 64 of 103 infants (62 percent) in the control group (risk ratio, 0.72; 95 percent confidence interval, 0.54 to 0.95; P=0.01). Twenty-four infants (24 percent) in the hypothermia group and 38 (37 percent) in the control group died (risk ratio, 0.68; 95 percent confidence interval, 0.44 to 1.05; P=0.08). There was no increase in major disability among survivors; the rate of cerebral palsy was 15 of 77 (19 percent) in the hypothermia group as compared with 19 of 64 (30 percent) in the control group (risk ratio, 0.68; 95 percent confidence interval, 0.38 to 1.22; P=0.20).Conclusions: Whole-body hypothermia reduces the risk of death or disability in infants with moderate or severe hypoxic-ischemic encephalopathy. [ABSTRACT FROM AUTHOR]- Published
- 2005
43. The effects of prosody and referent characteristics on novel noun learning in children.
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Hupp JM, Jungers MK, McDonald SA, and Song Y
- Abstract
Prosody is how words are spoken, often affecting the messages we convey. When prosody is relevant to the meaning, word learning is enhanced; however, it is unknown whether children attend to prosody that is not relevant to a word learning task (e.g., fearful for no reason). Previous research with adult noun learning showed that some emotional prosodies (e.g., warning) decreased word learning in comparison with a neutral Name prosody, demonstrating adults' inability to ignore this irrelevant information. Given preschool children's developing abilities to use prosody, the current research examined the effect of emotional prosody on children's novel noun learning. In this study, preschool children (N = 67) were trained on novel labels paired to novel referents across five prosodic categories. Results suggest that referent complexity, animacy status, and prosody affect children's noun learning, but in a different way than they affect adults. Prosody affected learning labels only for simple inanimate referents, with Happy and Fear prosodies being more accurate than the neutral Name. Whereas adults in previous research have been seemingly distracted by emotional prosody in learning nouns, children's novel noun learning for simple objects was enhanced by Happy and Fear prosodies. This demonstrates the potential benefits that emotional prosody may have on children's word learning., (Copyright © 2024 Elsevier Inc. All rights reserved.)
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- 2024
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44. Informaticist or Informatician? A Literary Perspective.
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Bain AP, McDonald SA, Lehmann CU, and Turer RW
- Abstract
Competing Interests: None declared.
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- 2024
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45. A Statistical Model for Inference of Recent and Incident HIV Infection Using Surveillance Data on Individuals Newly Diagnosed With HIV Infection in Scotland.
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McDonald SA, Yeung A, Nandwani R, Clutterbuck D, Wallace LA, Cullen BL, Shepherd SJ, Roy K, Marsh K, Gunson R, and Hutchinson SJ
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- Humans, Scotland epidemiology, Incidence, Male, Adult, Female, Middle Aged, Young Adult, Adolescent, HIV Infections epidemiology, HIV Infections diagnosis, Models, Statistical, Bayes Theorem
- Abstract
Background: To inform global ambitions to end AIDS, evaluation of progress toward HIV incidence reduction requires robust methods to measure incidence. Although HIV diagnosis date in routine HIV/AIDS surveillance systems are often used as a surrogate marker for incidence, it can be misleading if acquisition of transmission occurred years before testing. Other information present in data such as antibody testing dates, avidity testing result, and CD4 counts can assist, but the degree of missing data is often prohibitive., Methods: We constructed a Bayesian statistical model to estimate the annual proportion of first ever HIV diagnoses in Scotland (period 2015-2019) that represent recent HIV infection (ie, occurring within the previous 3-4 months) and incident HIV infection (ie, infection within the previous 12 months), by synthesizing avidity testing results and surveillance data on the interval since last negative HIV test., Results: Over the 5-year analysis period, the model-estimated proportion of incident infection was 43.9% (95% CI: 40.9 to 47.0), and the proportion of recent HIV infection was 21.6% (95% CI: 19.1 to 24.1). Among the mode of HIV acquisition categories, the highest proportion of recent infection was estimated for people who inject drugs: 27.4% (95% CI: 20.4 to 34.4)., Conclusions: The Bayesian approach is appropriate for the high prevalence of missing data that can occur in routine surveillance data sets. The proposed model will aid countries in improving their understanding of the number of people who have recently acquired their infection, which is needed to progress toward the goal of HIV transmission elimination., Competing Interests: S.A.M. works as a consultant to the health care and life science sector, including pharmaceutical companies. All other authors report no conflicts of interest. No specific sources of funding are reported., (Copyright © 2024 Wolters Kluwer Health, Inc. All rights reserved.)
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- 2024
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46. Informed consent for national registration of COVID-19 vaccination caused information bias of vaccine effectiveness estimates mostly in older adults: a bias correction study.
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van Werkhoven CH, de Gier B, McDonald SA, de Melker HE, Hahné SJM, van den Hof S, and Knol MJ
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- Humans, Aged, Middle Aged, Female, Male, Adult, Netherlands, Vaccine Efficacy statistics & numerical data, Adolescent, SARS-CoV-2, Young Adult, Vaccination statistics & numerical data, Intensive Care Units statistics & numerical data, COVID-19 Vaccines therapeutic use, COVID-19 prevention & control, COVID-19 epidemiology, Bias, Hospitalization statistics & numerical data, Informed Consent statistics & numerical data, Registries statistics & numerical data
- Abstract
Objectives: Registration in the Dutch national COVID-19 vaccination register requires consent from the vaccinee. This causes misclassification of nonconsenting vaccinated persons as being unvaccinated. We quantified and corrected the resulting information bias in vaccine effectiveness (VE) estimates., Study Design and Setting: National data were used for the period dominated by the SARS-CoV-2 Delta variant (July 11 to November 15, 2021). VE ((1-relative risk)∗100%) against COVID-19 hospitalization and intensive care unit (ICU) admission was estimated for individuals 12 to 49, 50 to 69, and ≥70 years of age using negative binomial regression. Anonymous data on vaccinations administered by the Municipal Health Services were used to determine informed consent percentages and estimate corrected VEs by iteratively imputing corrected vaccination status. Absolute bias was calculated as the absolute change in VE; relative bias as uncorrected/corrected relative risk., Results: A total of 8804 COVID-19 hospitalizations and 1692 COVID-19 ICU admissions were observed. The bias was largest in the 70+ age group where the nonconsent proportion was 7.0% and observed vaccination coverage was 87%: VE of primary vaccination against hospitalization changed from 75.5% (95% CI 73.5-77.4) before to 85.9% (95% CI 84.7-87.1) after correction (absolute bias -10.4 percentage point, relative bias 1.74). VE against ICU admission in this group was 88.7% (95% CI 86.2-90.8) before and 93.7% (95% CI 92.2-94.9) after correction (absolute bias -5.0 percentage point, relative bias 1.79)., Conclusion: VE estimates can be substantially biased with modest nonconsent percentages for vaccination data registration. Data on covariate-specific nonconsent percentages should be available to correct this bias., Competing Interests: Declaration of competing interest C.H. van Werkhoven declares financial and nonfinancial research support from DaVolterra and bioMérieux; financial research support from LimmaTech; consultancy fees from MSD and Sanofi-Pasteur (all payments to the University Medical Center Utrecht, not related to the current manuscript). There are no competing interests for any other author., (Copyright © 2024. Published by Elsevier Inc.)
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- 2024
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47. Cerebral injury and retinopathy as risk factors for blindness in extremely preterm infants.
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Honan BM, McDonald SA, Travers CP, Shukla VV, Ambalavanan N, Cotten CM, Jain VG, Arnold HE, Parikh NA, Tyson JE, Hintz SR, Walker SA, Gantz MG, Das A, and Carlo WA
- Abstract
Objective: This study investigates whether and to what extent cerebral injury is associated with bilateral blindness in extremely preterm infants, which has been attributed mainly to retinopathy of prematurity (ROP)., Design: Multicentre analysis of children born from 1994 to 2021 at gestational age 22 0/7 to 28 6/7 weeks with follow-up at 18-26 months. Logistic regression examined the adjusted association of bilateral blindness with severe ROP and/or cerebral injury among extremely preterm infants., Exposures: Severe ROP and cerebral injury, the latter defined as any of the following on cranial imaging: ventriculomegaly; blood/increased echogenicity in the parenchyma; cystic periventricular leukomalacia., Main Outcome Measures: Bilateral blindness, defined as a follow-up examination meeting criteria of 'blind-some functional vision' or 'blind-no useful vision' in both eyes., Results: The 19 863 children included had a mean gestational age of 25.6±1.7 weeks, mean birth weight of 782±158 g and 213 (1%) had bilateral blindness. Multiplicative interaction between ROP and cerebral injury was statistically significant. For infants with only severe ROP (n=3130), odds of blindness were 8.14 times higher (95% CI 4.52 to 14.65), and for those with only cerebral injury (n=2836), odds were 8.38 times higher (95% CI 5.28 to 13.28), compared with the reference group without either condition. Risks were not synergistic for infants with both severe ROP and cerebral injury (n=1438, adjusted OR=28.7, 95% CI 16.0 to 51.7, p<0.0001)., Conclusions: In a group of extremely preterm infants, severe ROP and cerebral injury were equally important risk factors for blindness. Besides ROP, clinicians should consider cerebral injury as a cause of blindness in children born extremely preterm., Trial Registration Number: NCT00063063., Competing Interests: Competing interests: NA is an advisor to ResBiotic and Alveolus Bio and serves on the Data and Safety Monitoring Board for Shire/Oak Hill Bio. CMC has a consulting agreement with ReAlta Life Sciences (for a new drug in clinical trials for hypoxic ischaemic encephalopathy), and IP in a company, CryoCell (for a cell therapy for HIE). AD has a grant from the Neonatal Research Network (NRN). CPT is supported by grants from the National Institutes of Health (K23HL157618). CPT is supported by a grant from Owlet Baby Care for an investigator-initiated study (ClinicalTrials.gov identifier: NCT05774470) and also has a patent application pending for a bradycardia predictor and interrupter. VVS is supported by a grant from the American Heart Association (23CDA1048106)., (© Author(s) (or their employer(s)) 2024. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.)
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- 2024
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48. Incidence of Invasive and Noninvasive Pneumococcal Pneumonia Hospitalizations in People Aged ≥50 Years: Assessing Variability Across Denmark and Spain.
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López-Lacort M, Amini M, Emborg HD, Nielsen J, McDonald SA, Valentiner-Branth P, Díez-Domingo J, and Orrico-Sánchez A
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- Humans, Denmark epidemiology, Male, Female, Spain epidemiology, Aged, Middle Aged, Incidence, Retrospective Studies, Aged, 80 and over, Streptococcus pneumoniae, Anti-Bacterial Agents therapeutic use, Comorbidity, Pneumonia, Pneumococcal epidemiology, Hospitalization statistics & numerical data
- Abstract
Determining pneumococcal pneumonia (PP) burden in the elderly population is challenging due to limited data on invasive PP (IPP) and, in particular, noninvasive PP (NIPP) incidence. Using retrospective cohorts of adults aged ≥50 years in Denmark (2 782 303) and the Valencia region, Spain (2 283 344), we found higher IPP hospitalization rates in Denmark than Valencia (18.3 vs 9/100 000 person-years [PY], respectively). Conversely, NIPP hospitalization rates were higher in Valencia (48.2 vs 7.2/100 000 PY). IPP and NIPP rates increased with age and comorbidities in both regions, with variations by sex and case characteristics (eg, complications, mortality). The burden of PP in adults is substantial, yet its true magnitude remains elusive. Discrepancies in clinical practices impede international comparisons; for instance, Valencia employed a higher frequency of urinary antigen tests compared to Denmark. Additionally, coding practices and prehospital antibiotic utilization may further influence these variations. These findings could guide policymakers and enhance the understanding of international disparities in disease burden assessments., Competing Interests: Potential conflicts of interest. M. L.-L., J. D.-D., and A. O.-S. have attended several congresses whose registration, travel, and accommodation costs have been covered by GlaxoSmithKline (GSK), Merck Sharp and Dohme (MSD), Novavax, and Sanofi. C. M. Q., M. L.-L., J. D.-D., and A. O.-S. have received grants from MSD, Sanofi, GSK, and Moderna. J. D.-D. has been principal investigator in clinical trials sponsored by Sanofi, MSD, GSK, and Pfizer. J. D.-D. and A. O.-S. have acted as advisors for GSK, MSD, Moderna, and Sanofi. All other authors report no potential conflicts. All authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed., (© The Author(s) 2024. Published by Oxford University Press on behalf of Infectious Diseases Society of America.)
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- 2024
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49. The COVID-19 Pandemic's Effect on Preventive Imaging.
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Weon JL, Xi Y, Ng YS, Cooper LN, Diaz MI, Turer RW, McDonald SA, Willett DL, Lehmann CU, and Chu L
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Introduction: This study assessed the effect of the COVID-19 pandemic on preventive care imaging and potential disparities because preventive care may be perceived as nonurgent. The objective was to identify the associations between the COVID-19 pandemic and changes in preventive imaging volumes for patients in general and as affected by race and ethnicities., Methods: The authors performed a retrospective observational study by extracting the weekly volumes of all imaging studies between January 7, 2019 and May 1, 2022 from a radiology data warehouse at a tertiary care medical center ( n =92,105 preventive imaging studies and 3,493,063 total radiology imaging studies) and compared preshutdown with postshutdown periods using a 2-sample t -test. Additional comparisons stratified by race and ethnicity were performed for mammograms and bone density examinations using interrupted time series models with negative binomial error distribution to assess the immediate level change and trends over time of preventive imaging volumes after shutdown., Results: The authors found a significant decrease in bilateral mammograms, bone density examinations, and aortic ultrasound examinations in the postshutdown period compared with those in the preshutdown period ( p <0.001, p =0.003, and p =0.001, respectively). There were no significant changes in low-dose computed tomography chest examinations ( p =0.46). The shutdown was associated with a significant immediate decrease in mammograms in the Hispanic and Latino group to approximately three quarters of its preshutdown level ( p =0.04). For bone density examinations, postshutdown weekly volumes tripled compared with the preshutdown volumes for Hispanic or Latino patients and doubled for non-Hispanic Black patients ( p <0.0001 for both). In comparison, a significant decrease was seen for Other patients (reduced to nearly a fifth of preshutdown volume) ( p <0.0001)., Conclusions: There was a significant decrease in overall volume of bilateral mammograms, bone density examinations, and aortic ultrasound examinations after pandemic shutdown. For mammograms, some of this decreasing trend was already seen before shutdown (such as for patients with Other race), so the shutdown was only specifically associated with an immediate decrease in mammogram levels in the Hispanic and Latino group. For bone density examinations, the shutdown was unexpectedly associated with an increase in volumes for Hispanic or Latino patients and non-Hispanic Black patients, which was countered by a significant steep decrease in volumes only for patients of Other race. Health systems should carefully explore their preventive screening examination volumes to determine which patients should be actively engaged to assure catch up on recommended care., (© 2024 The Author(s).)
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- 2024
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50. Myalgic Encephalomyelitis/Chronic Fatigue Syndrome After SARS-CoV-2 Infection.
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Unger ER, Lin JS, Wisk LE, Yu H, L'Hommedieu M, Lavretsky H, Montoy JCC, Gottlieb MA, Rising KL, Gentile NL, Santangelo M, Venkatesh AK, Rodriguez RM, Hill MJ, Geyer RE, Kean ER, Saydah S, McDonald SA, Huebinger R, Idris AH, Dorney J, Hota B, Spatz ES, Stephens KA, Weinstein RA, and Elmore JG
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- Humans, Female, Adult, Male, Prospective Studies, Middle Aged, Longitudinal Studies, Prevalence, Young Adult, United States epidemiology, Adolescent, Fatigue Syndrome, Chronic epidemiology, COVID-19 epidemiology, COVID-19 complications, SARS-CoV-2
- Abstract
Importance: Chronic symptoms reported following an infection with SARS-CoV-2, such as cognitive problems, overlap with symptoms included in the definition of myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS)., Objective: To evaluate the prevalence of ME/CFS-like illness subsequent to acute SARS-CoV-2 infection, changes in ME/CFS symptoms through 12 months of follow-up, and the association of ME/CFS symptoms with SARS-CoV-2 test results at the acute infection-like index illness., Design, Setting, and Participants: This prospective, multisite, longitudinal cohort study (Innovative Support for Patients with SARS-CoV-2 Infections Registry [INSPIRE]) enrolled participants from December 11, 2020, to August 29, 2022. Participants were adults aged 18 to 64 years with acute symptoms suggestive of SARS-CoV-2 infection who received a US Food and Drug Administration-approved SARS-CoV-2 test at the time of illness and did not die or withdraw from the study by 3 months. Follow-up surveys were collected through February 28, 2023., Exposure: COVID-19 status (positive vs negative) at enrollment., Main Outcome and Measures: The main outcome was the weighted proportion of participants with ME/CFS-like illness based on the 2015 Institute of Medicine clinical case definition using self-reported symptoms., Results: A total of 4378 participants were included in the study. Most were female (3226 [68.1%]). Mean (SD) age was 37.8 (11.8) years. The survey completion rates ranged from 38.7% (3613 of 4738 participants) to 76.3% (1835 of 4738) and decreased over time. The weighted proportion of participants identified with ME/CFS-like illness did not change significantly at 3 through 12 months of follow-up and was similar in the COVID-19-positive (range, 2.8%-3.7%) and COVID-19-negative (range, 3.1%-4.5%) groups. Adjusted analyses revealed no significant difference in the odds of ME/CFS-like illness at any time point between COVID-19-positive and COVID-19-negative individuals (marginal odds ratio range, 0.84 [95% CI, 0.42-1.67] to 1.18 [95% CI, 0.55-2.51])., Conclusions and Relevance: In this prospective cohort study, there was no evidence that the proportion of participants with ME/CFS-like illness differed between those infected with SARS-CoV-2 vs those without SARS-CoV-2 infection up to 12 months after infection. A 3% to 4% prevalence of ME/CFS-like illness after an acute infection-like index illness would impose a high societal burden given the millions of persons infected with SARS-CoV-2.
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- 2024
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