28 results on '"McDonald GD"'
Search Results
2. Fast machine-learning online optimization of ultra-cold-atom experiments.
- Author
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Wigley, PB, Everitt, PJ, van den Hengel, A, Bastian, JW, Sooriyabandara, MA, McDonald, GD, Hardman, KS, Quinlivan, CD, Manju, P, Kuhn, CCN, Petersen, IR, Luiten, AN, Hope, JJ, Robins, NP, Hush, MR, Wigley, PB, Everitt, PJ, van den Hengel, A, Bastian, JW, Sooriyabandara, MA, McDonald, GD, Hardman, KS, Quinlivan, CD, Manju, P, Kuhn, CCN, Petersen, IR, Luiten, AN, Hope, JJ, Robins, NP, and Hush, MR
- Abstract
We apply an online optimization process based on machine learning to the production of Bose-Einstein condensates (BEC). BEC is typically created with an exponential evaporation ramp that is optimal for ergodic dynamics with two-body s-wave interactions and no other loss rates, but likely sub-optimal for real experiments. Through repeated machine-controlled scientific experimentation and observations our 'learner' discovers an optimal evaporation ramp for BEC production. In contrast to previous work, our learner uses a Gaussian process to develop a statistical model of the relationship between the parameters it controls and the quality of the BEC produced. We demonstrate that the Gaussian process machine learner is able to discover a ramp that produces high quality BECs in 10 times fewer iterations than a previously used online optimization technique. Furthermore, we show the internal model developed can be used to determine which parameters are essential in BEC creation and which are unimportant, providing insight into the optimization process of the system.
- Published
- 2016
3. Association of pulmonary function testing abnormalities and severe veno-occlusive disease of the liver after marrow transplantation
- Author
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Crawford Sw, Hinds Ms, McDonald Gd, Matute-Bello G, and H. G. Schoch
- Subjects
Adult ,medicine.medical_specialty ,Hepatic veno-occlusive disease ,Transplantation Conditioning ,Adolescent ,Hepatic Veno-Occlusive Disease ,Gastroenterology ,Pulmonary function testing ,Risk Factors ,Diffusing capacity ,Internal medicine ,Medicine ,Humans ,Lung volumes ,Prospective Studies ,Child ,Bone Marrow Transplantation ,Transplantation ,Lung ,business.industry ,Respiratory disease ,Total Lung Capacity ,Hematology ,Odds ratio ,Middle Aged ,medicine.disease ,Surgery ,Respiratory Function Tests ,medicine.anatomical_structure ,Child, Preschool ,Pulmonary Diffusing Capacity ,Endothelium, Vascular ,business - Abstract
We investigated an association between pulmonary function testing (PFT) before bone marrow transplantation and the development of severe veno-occlusive disease (VOD) of the liver. We previously noted that reductions in diffusing capacity of the lung for carbon monoxide (corrected for hemoglobin) (D(L)COc) were associated with mortality after transplantation, but this was not caused by respiratory failure. We performed a case-series review of prospectively collected data from 307 marrow recipients who underwent PFT within 2 weeks of transplantation. Of these, 170 (56%) developed VOD; 39 (13%) mild, 81 (26%) moderate, and 50 (16%) severe or fatal. Both total lung capacity (TLC) and D(L)COc were associated with severe VOD in univariate analysis (P = 0.006 for each). However, D(L)COc entered logistic regression models that contained variables for all known risk factors for severe VOD, while TLC did not contribute additional predictive information. The odds ratio (OR) associated with a D(L)COc below the lower limits of normal (70% of predicted) was 2.4 (95 % CI, 1.0 to 5.4; P = 0.04). We conclude that reduced diffusion capacity of the lung measured before marrow transplantation is an independent risk for severe hepatic VOD. We speculate that the decreased D(l)COc indicates pre-existing systemic endothelial cell damage and a susceptibility to severe hepatic injury from chemotherapy.
- Published
- 1998
4. Amino acid sequence of the coelomic C globin from the sea cucumber Caudina (Molpadia) arenicola
- Author
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McDonald Gd, Kitto Gb, and Davidson L
- Subjects
Hemeprotein ,biology ,Macromolecular Substances ,Sea Cucumbers ,Molecular Sequence Data ,Sequence alignment ,Marine invertebrates ,Anatomy ,biology.organism_classification ,Biochemistry ,Molecular biology ,Biological Evolution ,Globins ,Sea cucumber ,Sequence Homology, Nucleic Acid ,Arenicola ,Animals ,Humans ,Globin ,Hemoglobin ,Amino Acid Sequence ,Peptide sequence - Abstract
The sequence of a globin from a marine invertebrate, the sea cucumber Caudina (Molpadia) arenicola (Echinodermata), is reported. This globin, chain C, is one of four major globins found in coelomic red cells in this organism and is the second to be sequenced. Chain C consists of 157 residues, is amino-terminally acetylated, and has an extended amino-terminal region. This globin shares a 60% sequence identity with the other sequenced C. arenicola globin, D chain (Mauri et al., Biochem. Biophys. Acta 1078, 63-67, 1991), but has a 93.6% identity with a globin from another sea cucumber, Paracaudina chilensis (Suzuki, Biochem. Biophys. Acta, 998, 292-296, 1989).
- Published
- 1992
5. Aeolian sediment transport on Io from lava-frost interactions.
- Author
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McDonald GD, Méndez Harper J, Ojha L, Corlies P, Dufek J, Ewing RC, and Kerber L
- Abstract
Surface modification on Jupiter's volcanically active moon, Io, has to date been attributed almost exclusively to lava emplacement and volcanic plume deposits. Here we demonstrate that wind-blown transport of sediment may also be altering the Ionian surface. Specifically, shallow subsurface interactions between lava and Io's widespread sulfur dioxide (SO
2 ) frost can produce localized sublimation vapor flows with sufficient gas densities to enable particle saltation. We calculate anticipated outgassing velocities from lava-SO2 frost interactions, and compare these to the saltation thresholds predicted when accounting for the tenuous nature of the sublimated vapor. We find that saltation may occur if frost temperatures surpass 155 K. Finally we make the first measurements of the dimensions of linear features in images from the Galileo probe, previously termed "ridges", which demonstrate certain similarities to dunes on other planetary bodies. Io joins a growing list of bodies with tenuous and transient atmospheres where aeolian sediment transport may be an important control on the landscape., (© 2022. The Author(s).)- Published
- 2022
- Full Text
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6. Erratum: Bright Solitonic Matter-Wave Interferometer [Phys. Rev. Lett. 113, 013002 (2014)].
- Author
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McDonald GD, Kuhn CCN, Hardman KS, Bennetts S, Everitt PJ, Altin PA, Debs JE, Close JD, and Robins NP
- Abstract
This corrects the article DOI: 10.1103/PhysRevLett.113.013002.
- Published
- 2017
- Full Text
- View/download PDF
7. Simultaneous Precision Gravimetry and Magnetic Gradiometry with a Bose-Einstein Condensate: A High Precision, Quantum Sensor.
- Author
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Hardman KS, Everitt PJ, McDonald GD, Manju P, Wigley PB, Sooriyabandara MA, Kuhn CC, Debs JE, Close JD, and Robins NP
- Abstract
A Bose-Einstein condensate is used as an atomic source for a high precision sensor. A 5×10^{6} atom F=1 spinor condensate of ^{87}Rb is released into free fall for up to 750 ms and probed with a T=130 ms Mach-Zehnder atom interferometer based on Bragg transitions. The Bragg interferometer simultaneously addresses the three magnetic states |m_{f}=1,0,-1⟩, facilitating a simultaneous measurement of the acceleration due to gravity with a 1000 run precision of Δg/g=1.45×10^{-9} and the magnetic field gradient to a precision of 120 pT/m.
- Published
- 2016
- Full Text
- View/download PDF
8. Fast machine-learning online optimization of ultra-cold-atom experiments.
- Author
-
Wigley PB, Everitt PJ, van den Hengel A, Bastian JW, Sooriyabandara MA, McDonald GD, Hardman KS, Quinlivan CD, Manju P, Kuhn CC, Petersen IR, Luiten AN, Hope JJ, Robins NP, and Hush MR
- Abstract
We apply an online optimization process based on machine learning to the production of Bose-Einstein condensates (BEC). BEC is typically created with an exponential evaporation ramp that is optimal for ergodic dynamics with two-body s-wave interactions and no other loss rates, but likely sub-optimal for real experiments. Through repeated machine-controlled scientific experimentation and observations our 'learner' discovers an optimal evaporation ramp for BEC production. In contrast to previous work, our learner uses a Gaussian process to develop a statistical model of the relationship between the parameters it controls and the quality of the BEC produced. We demonstrate that the Gaussian process machine learner is able to discover a ramp that produces high quality BECs in 10 times fewer iterations than a previously used online optimization technique. Furthermore, we show the internal model developed can be used to determine which parameters are essential in BEC creation and which are unimportant, providing insight into the optimization process of the system.
- Published
- 2016
- Full Text
- View/download PDF
9. Bright solitonic matter-wave interferometer.
- Author
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McDonald GD, Kuhn CC, Hardman KS, Bennetts S, Everitt PJ, Altin PA, Debs JE, Close JD, and Robins NP
- Abstract
We present the first realization of a solitonic atom interferometer. A Bose-Einstein condensate of 1×10(4) atoms of rubidium-85 is loaded into a horizontal optical waveguide. Through the use of a Feshbach resonance, the s-wave scattering length of the 85Rb atoms is tuned to a small negative value. This attractive atomic interaction then balances the inherent matter-wave dispersion, creating a bright solitonic matter wave. A Mach-Zehnder interferometer is constructed by driving Bragg transitions with the use of an optical lattice colinear with the waveguide. Matter-wave propagation and interferometric fringe visibility are compared across a range of s-wave scattering values including repulsive, attractive and noninteracting values. The solitonic matter wave is found to significantly increase fringe visibility even compared with a noninteracting cloud.
- Published
- 2014
- Full Text
- View/download PDF
10. External cavity diode lasers with 5kHz linewidth and 200nm tuning range at 1.55μm and methods for linewidth measurement.
- Author
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Bennetts S, McDonald GD, Hardman KS, Debs JE, Kuhn CC, Close JD, and Robins NP
- Abstract
Two simple external cavity diode laser designs using fibre pigtailed gain chips are tested and their properties compared with a high end DBR fibre laser. These ECDLs demonstrate a FWHM linewidth as low as 5.2kHz with a fitted Lorentzian FWHM linewidth as low as 1.6kHz. Tuning ranges of 200nm covering 1420nm to 1620nm were demonstrated. To the best of our knowledge these are the narrowest linewidth and most broadly tunable external cavity diode lasers reported to date. The improvement in linewidth is attributed to greatly enhanced acoustic isolation allowed by using fiber coupled gain chips and by replacing kinematic mounts with a pair of rotatable wedges for cavity alignment which eliminates acoustic resonances. A detailed description and discussion of techniques used to characterize the frequency noise and linewidths of these lasers is provided.
- Published
- 2014
- Full Text
- View/download PDF
11. Construction and characterization of external cavity diode lasers for atomic physics.
- Author
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Hardman KS, Bennetts S, Debs JE, Kuhn CC, McDonald GD, and Robins N
- Subjects
- Quantum Theory, Lasers, Semiconductor, Physics instrumentation, Physics methods
- Abstract
Since their development in the late 1980s, cheap, reliable external cavity diode lasers (ECDLs) have replaced complex and expensive traditional dye and Titanium Sapphire lasers as the workhorse laser of atomic physics labs. Their versatility and prolific use throughout atomic physics in applications such as absorption spectroscopy and laser cooling makes it imperative for incoming students to gain a firm practical understanding of these lasers. This publication builds upon the seminal work by Wieman, updating components, and providing a video tutorial. The setup, frequency locking and performance characterization of an ECDL will be described. Discussion of component selection and proper mounting of both diodes and gratings, the factors affecting mode selection within the cavity, proper alignment for optimal external feedback, optics setup for coarse and fine frequency sensitive measurements, a brief overview of laser locking techniques, and laser linewidth measurements are included.
- Published
- 2014
- Full Text
- View/download PDF
12. 11 W narrow linewidth laser source at 780 nm for laser cooling and manipulation of Rubidium.
- Author
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Sané SS, Bennetts S, Debs JE, Kuhn CC, McDonald GD, Altin PA, Close JD, and Robins NP
- Abstract
We present a narrow linewidth continuous laser source with over 11 W output power at 780 nm, based on single-pass frequency doubling of an amplified 1560 nm fibre laser with 36% efficiency. This source offers a combination of high power, simplicity, mode quality and stability. Without any active stabilization, the linewidth is measured to be below 10 kHz. The fibre seed is tunable over 60 GHz, which allows access to the D₂ transitions in ⁸⁷Rb and ⁸⁵Rb, providing a viable high-power source for laser cooling as well as for large-momentum-transfer beamsplitters in atom interferometry. Sources of this type will pave the way for a new generation of high flux, high duty-cycle degenerate quantum gas experiments.
- Published
- 2012
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13. Biochemical constraints in a protobiotic earth devoid of basic amino acids: the "BAA(-) world".
- Author
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McDonald GD and Storrie-Lombardi MC
- Subjects
- Amino Acid Sequence, Amino Acids, Basic genetics, Archaea genetics, Bacteria genetics, Genes, Archaeal, Genes, Bacterial, Phylogeny, Amino Acids, Basic analysis, Biochemical Phenomena, Earth, Planet
- Abstract
It has been hypothesized in this journal and elsewhere, based on surveys of published data from prebiotic synthesis experiments and carbonaceous meteorite analyses, that basic amino acids such as lysine and arginine were not abundant on prebiotic Earth. If the basic amino acids were incorporated only rarely into the first peptides formed in that environment, it is important to understand what protobiotic chemistry is possible in their absence. As an initial test of the hypothesis that basic amino acid negative [BAA(-)] proteins could have performed at least a subset of protobiotic chemistry, the current work reports on a survey of 13 archaeal and 13 bacterial genomes that has identified 61 modern gene sequences coding for known or putative proteins not containing arginine or lysine. Eleven of the sequences found code for proteins whose functions are well known and important in the biochemistry of modern microbial life: lysine biosynthesis protein LysW, arginine cluster proteins, copper ion binding proteins, bacterial flagellar proteins, and PE or PPE family proteins. These data indicate that the lack of basic amino acids does not prevent peptides or proteins from serving useful structural and biochemical functions. However, as would be predicted from fundamental physicochemical principles, we see no fossil evidence of prebiotic BAA(-) peptide sequences capable of interacting directly with nucleic acids.
- Published
- 2010
- Full Text
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14. An examination of the carbon isotope effects associated with amino acid biosynthesis.
- Author
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Scott JH, O'Brien DM, Emerson D, Sun H, McDonald GD, Salgado A, and Fogel ML
- Subjects
- Antarctic Regions, Archaea metabolism, Bacteria metabolism, Citric Acid Cycle, Gas Chromatography-Mass Spectrometry, Models, Biological, Amino Acids biosynthesis, Carbon Isotopes chemistry
- Abstract
Stable carbon isotope ratios (delta(13)C) were determined for alanine, proline, phenylalanine, valine, leucine, isoleucine, aspartate (aspartic acid and asparagine), glutamate (glutamic acid and glutamine), lysine, serine, glycine, and threonine from metabolically diverse microorganisms. The microorganisms examined included fermenting bacteria, organotrophic, chemolithotrophic, phototrophic, methylotrophic, methanogenic, acetogenic, acetotrophic, and naturally occurring cryptoendolithic communities from the Dry Valleys of Antarctica. Here we demonstrated that reactions involved in amino acid biosynthesis can be used to distinguish amino acids formed by life from those formed by nonbiological processes. The unique patterns of delta(13)C imprinted by life on amino acids produced a biological bias. We also showed that, by applying discriminant function analysis to the delta(13)C value of a pool of amino acids formed by biological activity, it was possible to identify key aspects of intermediary carbon metabolism in the microbial world. In fact, microorganisms examined in this study could be placed within one of three metabolic groups: (1) heterotrophs that grow by oxidizing compounds containing three or more carbon-to-carbon bonds (fermenters and organotrophs), (2) autotrophs that grow by taking up carbon dioxide (chemolitotrophs and phototrophs), and (3) acetoclastic microbes that grow by assimilation of formaldehyde or acetate (methylotrophs, methanogens, acetogens, and acetotrophs). Furthermore, we demonstrated that cryptoendolithic communities from Antarctica grouped most closely with the autotrophs, which indicates that the dominant metabolic pathways in these communities are likely those utilized for CO(2 )fixation. We propose that this technique can be used to determine the dominant metabolic types in a community and reveal the overall flow of carbon in a complex ecosystem.
- Published
- 2006
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15. Amino acid distribution in meteorites: diagenesis, extraction methods, and standard metrics in the search for extraterrestrial biosignatures.
- Author
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McDonald GD and Storrie-Lombardi MC
- Subjects
- Amino Acids isolation & purification, Amino Acids standards, Cluster Analysis, Earth, Planet, Exobiology, Extraterrestrial Environment, Mars, Neural Networks, Computer, Origin of Life, Principal Component Analysis, Stochastic Processes, Amino Acids analysis, Meteoroids
- Abstract
The relative abundance of the protein amino acids has been previously investigated as a potential marker for biogenicity in meteoritic samples. However, these investigations were executed without a quantitative metric to evaluate distribution variations, and they did not account for the possibility of interdisciplinary systematic error arising from inter-laboratory differences in extraction and detection techniques. Principal component analysis (PCA), hierarchical cluster analysis (HCA), and stochastic probabilistic artificial neural networks (ANNs) were used to compare the distributions for nine protein amino acids previously reported for the Murchison carbonaceous chondrite, Mars meteorites (ALH84001, Nakhla, and EETA79001), prebiotic synthesis experiments, and terrestrial biota and sediments. These techniques allowed us (1) to identify a shift in terrestrial amino acid distributions secondary to diagenesis; (2) to detect differences in terrestrial distributions that may be systematic differences between extraction and analysis techniques in biological and geological laboratories; and (3) to determine that distributions in meteoritic samples appear more similar to prebiotic chemistry samples than they do to the terrestrial unaltered or diagenetic samples. Both diagenesis and putative interdisciplinary differences in analysis complicate interpretation of meteoritic amino acid distributions. We propose that the analysis of future samples from such diverse sources as meteoritic influx, sample return missions, and in situ exploration of Mars would be less ambiguous with adoption of standardized assay techniques, systematic inclusion of assay standards, and the use of a quantitative, probabilistic metric. We present here one such metric determined by sequential feature extraction and normalization (PCA), information-driven automated exploration of classification possibilities (HCA), and prediction of classification accuracy (ANNs).
- Published
- 2006
- Full Text
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16. Aspartic acid racemization and age-depth relationships for organic carbon in Siberian permafrost.
- Author
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Brinton KL, Tsapin AI, Gilichinsky D, and McDonald GD
- Subjects
- Siberia, Stereoisomerism, Aspartic Acid chemistry, Carbon chemistry, Freezing, Soil
- Abstract
We have analyzed the degree of racemization of aspartic acid in permafrost samples from Northern Siberia, an area from which microorganisms of apparent ages up to a few million years have previously been isolated and cultured. We find that the extent of aspartic acid racemization in permafrost cores increases very slowly up to an age of approximately 25,000 years (around 5 m in depth). The apparent temperature of racemization over the age range of 0-25,000 years, determined using measured aspartic acid racemization rate constants, is -19 degrees C. This apparent racemization temperature is significantly lower than the measured environmental temperature (-11 to -13 degrees C) and suggests active recycling of D-aspartic acid in Siberian permafrost up to an age of around 25,000 years. This indicates that permafrost organisms are capable of repairing some molecular damage incurred while in a "dormant" state over geologic time.
- Published
- 2002
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17. Amino acids in the Martian meteorite Nakhla.
- Author
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Glavin DP, Bada JL, Brinton KL, and McDonald GD
- Subjects
- Alanine analysis, Aspartic Acid metabolism, Egypt, Glutamic Acid analysis, Glycine analysis, beta-Alanine analysis, gamma-Aminobutyric Acid analysis, Amino Acids analysis, Mars, Meteoroids
- Abstract
A suite of protein and nonprotein amino acids were detected with high-performance liquid chromatography in the water- and acid-soluble components of an interior fragment of the Martian meteorite Nakhla, which fell in Egypt in 1911. Aspartic and glutamic acids, glycine, alanine, beta-alanine, and gamma-amino-n-butyric acid (gamma-ABA) were the most abundant amino acids detected and were found primarily in the 6 M HCl-hydrolyzed, hot water extract. The concentrations ranged from 20 to 330 parts per billion of bulk meteorite. The amino acid distribution in Nakhla, including the D/L ratios (values range from <0.1 to 0.5), is similar to what is found in bacterially degraded organic matter. The amino acids in Nakhla appear to be derived from terrestrial organic matter that infiltrated the meteorite soon after its fall to Earth, although it is possible that some of the amino acids are endogenous to the meteorite. The rapid amino acid contamination of Martian meteorites after direct exposure to the terrestrial environment has important implications for Mars sample-return missions and the curation of the samples from the time of their delivery to Earth.
- Published
- 1999
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18. A search for endogenous amino acids in martian meteorite ALH84001.
- Author
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Bada JL, Glavin DP, McDonald GD, and Becker L
- Subjects
- Alanine analysis, Aspartic Acid analysis, Chromatography, High Pressure Liquid, Glycine analysis, Serine analysis, Stereoisomerism, Amino Acids analysis, Mars, Meteoroids
- Abstract
Trace amounts of glycine, serine, and alanine were detected in the carbonate component of the martian meteorite ALH84001 by high-performance liquid chromatography. The detected amino acids were not uniformly distributed in the carbonate component and ranged in concentration from 0.1 to 7 parts per million. Although the detected alanine consists primarily of the L enantiomer, low concentrations (<0.1 parts per million) of endogenous D-alanine may be present in the ALH84001 carbonates. The amino acids present in this sample of ALH84001 appear to be terrestrial in origin and similar to those in Allan Hills ice, although the possibility cannot be ruled out that minute amounts of some amino acids such as D-alanine are preserved in the meteorite.
- Published
- 1998
- Full Text
- View/download PDF
19. Detecting amino acids on Mars.
- Author
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Bada JL and McDonald GD
- Subjects
- Amino Acids chemistry, Aminoisobutyric Acids analysis, Carbonates analysis, Carbonates chemistry, Chromatography, High Pressure Liquid, Exobiology instrumentation, Exobiology methods, Exobiology trends, Gas Chromatography-Mass Spectrometry, Isomerism, Origin of Life, Soil analysis, Space Flight instrumentation, Space Flight trends, Stereoisomerism, Valine analysis, Amino Acids analysis, Extraterrestrial Environment, Mars, Meteoroids
- Published
- 1996
20. A search for endogenous amino acids in the Martian meteorite EETA79001.
- Author
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McDonald GD and Bada JL
- Subjects
- Antarctic Regions, Chromatography, High Pressure Liquid, Minerals analysis, Silicates analysis, Amino Acids analysis, Exobiology, Ice analysis, Mars, Meteoroids
- Abstract
The Antarctic shergottite EETA79001 is believed to be an impact-ejected fragment of the planet Mars. Samples of the carbonate (white druse) and the basaltic (lithology A) components from this meteorite have been found to contain amino acids at a level of approximately 1 ppm and 0.4 ppm, respectively. The detected amino acids consist almost exclusively of the L-enantiomers of the amino acids commonly found in proteins, and are thus terrestrial contaminants. There is no indication of the presence of alpha-aminoisobutyric acid, one of the most abundant amino acids in several carbonaceous chondrites. The relative abundances of amino acids in the druse material resemble those in Antarctic ice, suggesting that the source of the amino acids may be ice meltwater. The level of amino acids in EETA79001 druse is not by itself sufficient to account for the 600-700 ppm of volatile C reported in druse samples and suggested to be from endogenous martian organic material. However, estimates of total terrestrial organic C present in the druse material based on our amino acid analyses and the organic C content of polar ice can account for most of the reported putative organic C in EETA79001 druse.
- Published
- 1995
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21. The origin of life in the solar system: current issues.
- Author
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Chyba CF and McDonald GD
- Subjects
- Evolution, Molecular, Evolution, Planetary, Meteoroids, Minor Planets, Evolution, Chemical, Exobiology, Extraterrestrial Environment, Origin of Life, RNA, Solar System
- Published
- 1995
- Full Text
- View/download PDF
22. Amino acid racemization on Mars: implications for the preservation of biomolecules from an extinct martian biota.
- Author
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Bada JL and McDonald GD
- Subjects
- Amino Acids chemistry, Cold Temperature, Hot Temperature, Isomerism, Aspartic Acid chemistry, Evolution, Chemical, Isoleucine chemistry, Mars, Origin of Life
- Abstract
Using kinetic data, we have estimated the racemization half-lives and times for total racemization of amino acids under conditions relevant to the surface of Mars. Amino acids from an extinct martian biota maintained in a dry, cold (<250 K) environment would not have racemized significantly over the lifetime of the planet. Racemization would have taken place in environments where liquid water was present even for time periods of only a few million years following biotic extinction. The best preservation of both amino acid homochirality and nucleic acid genetic information associated with extinct martian life would be in the polar regions.
- Published
- 1995
- Full Text
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23. The Titan haze revisited: magnetospheric energy sources and quantitative tholin yields.
- Author
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Thompson WR, McDonald GD, and Sagan C
- Subjects
- Aerosols, Hydrocarbons chemistry, Methane chemistry, Models, Theoretical, Neptune, Nitrogen chemistry, Atmosphere analysis, Dust analysis, Electrons, Extraterrestrial Environment, Polymers chemistry, Saturn
- Abstract
We present laboratory measurements of the radiation yields of complex organic solids produced from N2/CH4 gas mixtures containing 10 or 0.1% CH4. These tholins are thought to resemble organic aerosols produced in the atmospheres of Titan, Pluto, and Triton. The tholin yields are large compared to the total yield of gaseous products: nominally, 13 (C + N)/100 eV for Titan tholin and 2.1 (C + N)/100 eV for Triton tholin. High-energy magnetospheric electrons responsible for tholin production represent a class distinct from the plasma electrons considered in models of Titan's airglow. Electrons with E > 20 keV provide an energy flux approximately 1 x 10(-2) erg cm-2 sec-1, implying from our measured tholin yields a mass flux of 0.5 to 4.0 x 10(-14) g cm-2 sec-1 of tholin. (The corresponding thickness of the tholin sedimentary column accumulated over 4 Gyr on Titan's surface is 4 to 30 m.) This figure is in agreement with required mass fluxes computed from recent radiative transfer and sedimentation models. If, however, these results, derived from experiments at approximately 2 mb, are applied to lower pressure levels toward peak auroral electron energy deposition and scaled with pressure as the gas-phase organic yields, the derived tholin mass flux is at least an order of magnitude less. We attribute this difference to the fact that tholin synthesis occurs well below the level of maximum electron energy deposition and to possible contributions to tholins from UV-derived C2-hydrocarbons. We conclude that Titan tholin, produced by magnetospheric electrons, is alone sufficient to supply at least a significant fraction of Titan's haze--a result consistent with the fact that the optical properties of Titan tholin, among all proposed materials, are best at reproducing Titan's geometric albedo spectrum from near UV to mid-IR in light-scattering models.
- Published
- 1994
- Full Text
- View/download PDF
24. Chemical investigation of Titan and Triton tholins.
- Author
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McDonald GD, Thompson WR, Heinrich M, Khare BN, and Sagan C
- Subjects
- Amino Acids analysis, Amino Acids chemical synthesis, Chromatography, High Pressure Liquid, Extraterrestrial Environment, Hydrolysis, Polymers chemical synthesis, Spectrophotometry, Ultraviolet, Spectroscopy, Fourier Transform Infrared, Atmosphere analysis, Hydrocarbons chemistry, Methane chemistry, Neptune, Nitrogen chemistry, Polymers chemistry, Saturn
- Abstract
We report chromatographic and spectroscopic analyses of both Titan and Triton tholins, organic solids made from the plasma irradiation of 0.9:0.1 and 0.999:0.001 N2/CH4 gas mixtures, respectively. The lower CH4 mixing ratio leads to a nitrogen-richer tholin (N/C > 1), probably including nitrogen heterocyclic compounds. Unlike Titan tholin, bulk Triton tholin is poor in nitriles. From high-pressure liquid chromatography, ultraviolet and infrared spectroscopy, and molecular weight estimation by gel filtration chromatography, we conclude that (1) several H2O-soluble fractions, each with distinct UV and IR spectral signatures, are present, (2) these fractions are not identical in the two tholins, (3) the H2O-soluble fractions of Titan tholins do not contain significant amounts of nitriles, despite the major role of nitriles in bulk Titan tholin, and (4) the H2O-soluble fractions of both tholins are mainly molecules containing about 10 to 50 (C + N) atoms. We report yields of amino acids upon hydrolysis of Titan and Triton tholins. Titan tholin is largely insoluble in the putative hydrocarbon lakes or oceans on Titan, but can yield the H2O-soluble species investigated here upon contact with transient (e.g., impact-generated) liquid water.
- Published
- 1994
- Full Text
- View/download PDF
25. Polycyclic aromatic hydrocarbons in the atmospheres of Titan and Jupiter.
- Author
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Sagan C, Khare BN, Thompson WR, McDonald GD, Wing MR, Bada JL, Vo-Dinh T, and Arakawa ET
- Subjects
- Ammonia chemistry, Gas Chromatography-Mass Spectrometry, Mass Spectrometry, Methane chemistry, Polycyclic Aromatic Hydrocarbons analysis, Polymers analysis, Water chemistry, Atmosphere analysis, Extraterrestrial Environment, Jupiter, Polycyclic Aromatic Hydrocarbons chemistry, Polymers chemistry, Saturn
- Abstract
Polycyclic aromatic hydrocarbons (PAHs) are important components of the interstellar medium and carbonaceous chondrites, but have never been identified in the reducing atmospheres of the outer solar system. Incompletely characterized complex organic solids (tholins) produced by irradiating simulated Titan atmospheres reproduce well the observed UV/visible/IR optical constants of the Titan stratospheric haze. Titan tholin and a tholin generated in a crude simulation of the atmosphere of Jupiter are examined by two-step laser desorption/multiphoton ionization mass spectrometry. A range of two- to four-ring PAHs, some with one to four alkylation sites are identified, with net abundance approximately 10(-4) g g-1 (grams per gram) of tholins produced. Synchronous fluorescence techniques confirm this detection. Titan tholins have proportionately more one- and two-ring PAHs than do Jupiter tholins, which in turn have more four-ring and larger PAHs. The four-ringed PAH chrysene, prominent in some discussions of interstellar grains, is found in Jupiter tholins. Solid state 13C NMR spectroscopy suggests approximately equal to 25% of the total C in both tholins is tied up in aromatic and/or aliphatic alkenes. IR spectra indicate an upper limit in both tholins of approximately equal to 6% by mass in benzenes, heterocyclics, and PAHs with more than four rings. Condensed PAHs may contribute at most approximately 10% to the observed detached limb haze layers on Titan. As with interstellar PAHs, the synthesis route of planetary PAHs is likely to be via acetylene addition reactions.
- Published
- 1993
- Full Text
- View/download PDF
26. Carbon onions in meteorites [letter].
- Author
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Becker L, McDonald GD, and Bada JL
- Subjects
- Carbon analysis, Graphite analysis, Microscopy, Electron, Carbon chemistry, Meteoroids
- Published
- 1993
- Full Text
- View/download PDF
27. Radiation chemistry in the Jovian stratosphere: laboratory simulations.
- Author
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McDonald GD, Thompson WR, and Sagan C
- Subjects
- Ammonia chemistry, Cosmic Radiation, Electrons, Extraterrestrial Environment, Helium, Methane chemistry, Photochemistry, Radiochemistry, Solar Activity, Atmosphere analysis, Hydrocarbons analysis, Hydrogen chemistry, Jupiter, Nitrogen Compounds analysis
- Abstract
Low-pressure continuous-flow laboratory simulations of plasma induced chemistry in H2/He/CH4/NH3 atmospheres show radiation yields of hydrocarbons and nitrogen-containing organic compounds that increase with decreasing pressure in the range 2-200 mbar. Major products of these experiments that have been observed in the Jovian atmosphere are acetylene (C2H2), ethylene (C2H4), ethane (C2H6), hydrogen cyanide (HCN), propane (C3H8), and propyne (C3H4). Major products that have not yet been observed on Jupiter include acetonitrile (CH3CN), methylamine (CH3NH2), propene (C3H6), butane (C4H10), and butene (C4H8). Various other saturated and unsaturated hydrocarbons, as well as other amines and nitriles, are present in these experiments as minor products. We place upper limits of 10(6)-10(9) molecules cm-2 sec-1 on production rates of the major species from auroral chemistry in the Jovian stratosphere, and calculate stratospheric mole fraction contributions. This work shows that auroral processes may account for 10-100% of the total abundances of most observed organic species in the polar regions. Our experiments are consistent with models of Jovian polar stratospheric aerosol haze formation from polymerization of acetylene by secondary ultraviolet processing.
- Published
- 1992
- Full Text
- View/download PDF
28. CH4/NH3/H2O spark tholin: chemical analysis and interaction with Jovian aqueous clouds.
- Author
-
McDonald GD, Khare BN, Thompson WR, and Sagan C
- Subjects
- Amino Acids analysis, Chemical Phenomena, Chemistry, Chromatography, High Pressure Liquid, Extraterrestrial Environment, Gas Chromatography-Mass Spectrometry, Hydrogen-Ion Concentration, Hydrolysis, Models, Molecular, Ammonia chemistry, Atmosphere, Jupiter, Methane chemistry, Polymers chemistry, Water
- Abstract
The organic solid (tholin) produced by spark discharge in a CH4 + NH3 + H2O atmosphere is investigated, along with the separable components of its water-soluble fraction. The chemistry of this material serves as a provisional model for the interaction of Jovian organic heteropolymers with the deep aqueous clouds of Jupiter. Intact (unhydrolyzed) tholin is resolved into four chemically distinct fractions by high-pressure liquid chromatography (HPLC). Gel filtration chromatography reveals abundant components at molecular weights approximately or equal to 600-700 and 200-300 Da. Gas chromatography/mass spectrometry of derivatized hydrolysis products of unfractionated tholin shows about 10% by mass protein and nonprotein amino acids, chiefly glycine, alanine, aspartic acid, beta-alanine, and beta-aminobutyric acid, and 12% by mass other organic acids and hydroxy acids. The stereospecificity of alanine is investigated and shown to be racemic. The four principal HPLC fractions yield distinctly different proportions of amino acids. Chemical tests show that small peptides or organic molecules containing multiple amino acid precursors are a possibility in the intact tholins, but substantial quantities of large peptides are not indicated. Candidate 700-Da molecules have a central unsaturated, hydrocarbon- and nitrile-rich core, linked by acid-labile (ester or amide) bonds to amino acid and carboxylic acid side groups. The core is probably not HCN "polymer." The concentration of amino acids from tholin hydrolysis in the lower aqueous clouds of Jupiter, about 0.1 micromole, is enough to maintain small populations of terrestrial microorganisms even if the amino acids must serve as the sole carbon source.
- Published
- 1991
- Full Text
- View/download PDF
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