29 results on '"Matthijs Raaben"'
Search Results
2. Reconstruction of the cell entry pathway of an extinct virus.
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Lindsey R Robinson-McCarthy, Kevin R McCarthy, Matthijs Raaben, Silvia Piccinotti, Joppe Nieuwenhuis, Sarah H Stubbs, Mark J G Bakkers, and Sean P J Whelan
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Endogenous retroviruses (ERVs), remnants of ancient germline infections, comprise 8% of the human genome. The most recently integrated includes human ERV-K (HERV-K) where several envelope (env) sequences remain intact. Viral pseudotypes decorated with one of those Envs are infectious. Using a recombinant vesicular stomatitis virus encoding HERV-K Env as its sole attachment and fusion protein (VSV-HERVK) we conducted a genome-wide haploid genetic screen to interrogate the host requirements for infection. This screen identified 11 genes involved in heparan sulfate biosynthesis. Genetic inhibition or chemical removal of heparan sulfate and addition of excess soluble heparan sulfate inhibit infection. Direct binding of heparin to soluble HERV-K Env and purified VSV-HERVK defines it as critical for viral attachment. Cell surface bound VSV-HERVK particles are triggered to infect on exposure to acidic pH, whereas acid pH pretreatment of virions blocks infection. Testing of additional endogenous HERV-K env sequences reveals they bind heparin and mediate acid pH triggered fusion. This work reconstructs and defines key steps in the infectious entry pathway of an extinct virus.
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- 2018
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3. A Single Residue in Ebola Virus Receptor NPC1 Influences Cellular Host Range in Reptiles
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Esther Ndungo, Andrew S. Herbert, Matthijs Raaben, Gregor Obernosterer, Rohan Biswas, Emily Happy Miller, Ariel S. Wirchnianski, Jan E. Carette, Thijn R. Brummelkamp, Sean P. Whelan, John M. Dye, and Kartik Chandran
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Ebola virus ,NPC1 ,Niemann-Pick C1 ,endosomal receptor ,filovirus ,intracellular receptor ,Microbiology ,QR1-502 - Abstract
ABSTRACT Filoviruses are the causative agents of an increasing number of disease outbreaks in human populations, including the current unprecedented Ebola virus disease (EVD) outbreak in western Africa. One obstacle to controlling these epidemics is our poor understanding of the host range of filoviruses and their natural reservoirs. Here, we investigated the role of the intracellular filovirus receptor, Niemann-Pick C1 (NPC1) as a molecular determinant of Ebola virus (EBOV) host range at the cellular level. Whereas human cells can be infected by EBOV, a cell line derived from a Russell’s viper (Daboia russellii) (VH-2) is resistant to infection in an NPC1-dependent manner. We found that VH-2 cells are resistant to EBOV infection because the Russell’s viper NPC1 ortholog bound poorly to the EBOV spike glycoprotein (GP). Analysis of panels of viper-human NPC1 chimeras and point mutants allowed us to identify a single amino acid residue in NPC1, at position 503, that bidirectionally influenced both its binding to EBOV GP and its viral receptor activity in cells. Significantly, this single residue change perturbed neither NPC1’s endosomal localization nor its housekeeping role in cellular cholesterol trafficking. Together with other recent work, these findings identify sequences in NPC1 that are important for viral receptor activity by virtue of their direct interaction with EBOV GP and suggest that they may influence filovirus host range in nature. Broader surveys of NPC1 orthologs from vertebrates may delineate additional sequence polymorphisms in this gene that control susceptibility to filovirus infection. IMPORTANCE Identifying cellular factors that determine susceptibility to infection can help us understand how Ebola virus is transmitted. We asked if the EBOV receptor Niemann-Pick C1 (NPC1) could explain why reptiles are resistant to EBOV infection. We demonstrate that cells derived from the Russell’s viper are not susceptible to infection because EBOV cannot bind to viper NPC1. This resistance to infection can be mapped to a single amino acid residue in viper NPC1 that renders it unable to bind to EBOV GP. The newly solved structure of EBOV GP bound to NPC1 confirms our findings, revealing that this residue dips into the GP receptor-binding pocket and is therefore critical to the binding interface. Consequently, this otherwise well-conserved residue in vertebrate species influences the ability of reptilian NPC1 proteins to bind to EBOV GP, thereby affecting viral host range in reptilian cells.
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- 2016
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4. CD200 receptor controls sex-specific TLR7 responses to viral infection.
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Guruswamy Karnam, Tomasz P Rygiel, Matthijs Raaben, Guy C M Grinwis, Frank E Coenjaerts, Maaike E Ressing, Peter J M Rottier, Cornelis A M de Haan, and Linde Meyaard
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Immunological checkpoints, such as the inhibitory CD200 receptor (CD200R), play a dual role in balancing the immune system during microbial infection. On the one hand these inhibitory signals prevent excessive immune mediated pathology but on the other hand they may impair clearance of the pathogen. We studied the influence of the inhibitory CD200-CD200R axis on clearance and pathology in two different virus infection models. We find that lack of CD200R signaling strongly enhances type I interferon (IFN) production and viral clearance and improves the outcome of mouse hepatitis corona virus (MHV) infection, particularly in female mice. MHV clearance is known to be dependent on Toll like receptor 7 (TLR7)-mediated type I IFN production and sex differences in TLR7 responses previously have been reported for humans. We therefore hypothesize that CD200R ligation suppresses TLR7 responses and that release of this inhibition enlarges sex differences in TLR7 signaling. This hypothesis is supported by our findings that in vivo administration of synthetic TLR7 ligand leads to enhanced type I IFN production, particularly in female Cd200(-/-) mice and that CD200R ligation inhibits TLR7 signaling in vitro. In influenza A virus infection we show that viral clearance is determined by sex but not by CD200R signaling. However, absence of CD200R in influenza A virus infection results in enhanced lung neutrophil influx and pathology in females. Thus, CD200-CD200R and sex are host factors that together determine the outcome of viral infection. Our data predict a sex bias in both beneficial and pathological immune responses to virus infection upon therapeutic targeting of CD200-CD200R.
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- 2012
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5. Mouse hepatitis coronavirus RNA replication depends on GBF1-mediated ARF1 activation.
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Monique H Verheije, Matthijs Raaben, Muriel Mari, Eddie G Te Lintelo, Fulvio Reggiori, Frank J M van Kuppeveld, Peter J M Rottier, and Cornelis A M de Haan
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Coronaviruses induce in infected cells the formation of double membrane vesicles, which are the sites of RNA replication. Not much is known about the formation of these vesicles, although recent observations indicate an important role for the endoplasmic reticulum in the formation of the mouse hepatitis coronavirus (MHV) replication complexes (RCs). We now show that MHV replication is sensitive to brefeldin A (BFA). Consistently, expression of a dominant-negative mutant of ARF1, known to mimic the action of the drug, inhibited MHV infection profoundly. Immunofluorescence analysis and quantitative electron microscopy demonstrated that BFA did not block the formation of RCs per se, but rather reduced their number. MHV RNA replication was not sensitive to BFA in MDCK cells, which are known to express the BFA-resistant guanine nucleotide exchange factor GBF1. Accordingly, individual knockdown of the Golgi-resident targets of BFA by transfection of small interfering RNAs (siRNAs) showed that GBF1, but not BIG1 or BIG2, was critically involved in MHV RNA replication. ARF1, the cellular effector of GBF1, also appeared to be involved in MHV replication, as siRNAs targeting this small GTPase inhibited MHV infection significantly. Collectively, our results demonstrate that GBF1-mediated ARF1 activation is required for efficient MHV RNA replication and reveal that the early secretory pathway and MHV replication complex formation are closely connected.
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- 2008
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6. The SPPL3-Defined Glycosphingolipid Repertoire Orchestrates HLA Class I-Mediated Immune Responses
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Jacques Neefjes, Anastasia Xagara, Johannes B. Huppa, Matthijs Raaben, Sophie Bliss, Xiangrui Kong, Elmer Stickel, Mirjam H.M. Heemskerk, Tao Zhang, Hermen S. Overkleeft, Stephanie Holst, Soldano Ferrone, Birol Cabukusta, Vincent A. Blomen, Manfred Wuhrer, Thijn R. Brummelkamp, Antonius A. de Waard, Carolin Gerke, Anne Halenius, René Platzer, Lennert Janssen, Rosina Plomp, Marlieke L.M. Jongsma, Arend Mulder, Tamara Verkerk, Frans H.J. Claas, Marieke Griffioen, Robbert M. Spaapen, AII - Inflammatory diseases, Graduate School, Landsteiner Laboratory, CCA - Cancer biology and immunology, and Experimental Immunology
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0301 basic medicine ,medicine.medical_treatment ,CD8-Positive T-Lymphocytes ,Glycosyltransferases/metabolism ,Lymphocyte Activation ,Glycosphingolipids/immunology ,0302 clinical medicine ,HLA Antigens ,Aspartic Acid Endopeptidases ,Immunology and Allergy ,Glioma/immunology ,Antigen Presentation ,Tumor ,biology ,Glioma ,Gene Expression Regulation, Neoplastic ,medicine.anatomical_structure ,Infectious Diseases ,030220 oncology & carcinogenesis ,Gene Knockdown Techniques ,Immunotherapy/methods ,lipids (amino acids, peptides, and proteins) ,Immunotherapy ,HLA Antigens/immunology ,Antibody ,Signal Transduction ,T cell ,Antigen presentation ,Immunology ,Histocompatibility Antigens Class I/immunology ,Human leukocyte antigen ,CD8-Positive T-Lymphocytes/immunology ,Glycosphingolipids ,Article ,Cell Line ,03 medical and health sciences ,Immune system ,Antigen ,Cell Line, Tumor ,MHC class I ,medicine ,Humans ,Neoplastic ,Histocompatibility Antigens Class I ,Glycosyltransferases ,Survival Analysis ,030104 developmental biology ,Gene Expression Regulation ,Cancer research ,biology.protein ,Tumor Escape ,Aspartic Acid Endopeptidases/genetics - Abstract
HLA class I (HLA-I) glycoproteins drive immune responses by presenting antigens to cognate CD8+ T cells. This process is often hijacked by tumors and pathogens for immune evasion. Because options for restoring HLA-I antigen presentation are limited, we aimed to identify druggable HLA-I pathway targets. Using iterative genome-wide screens, we uncovered that the cell surface glycosphingolipid (GSL) repertoire determines effective HLA-I antigen presentation. We show that absence of the protease SPPL3 augmented B3GNT5 enzyme activity, resulting in upregulation of surface neolacto-series GSLs. These GSLs sterically impeded antibody and receptor interactions with HLA-I and diminished CD8+ T cell activation. Furthermore, a disturbed SPPL3-B3GNT5 pathway in glioma correlated with decreased patient survival. We show that the immunomodulatory effect could be reversed through GSL synthesis inhibition using clinically approved drugs. Overall, our study identifies a GSL signature that inhibits immune recognition and represents a potential therapeutic target in cancer, infection, and autoimmunity.
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- 2020
7. The SPPL3-defined glycosphingolipid repertoire regulates immune responses by improving HLA class I access
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Mirjam H.M. Heemskerk, Anastasia Xagara, Tamara Verkerk, Marieke Griffioen, Hermen S. Overkleeft, Marlieke L.M. Jongsma, Lennert Janssen, Soldano Ferrone, Tao Zhang, Stephanie Holst, Johannes B. Huppa, Birol Cabukusta, Robbert M. Spaapen, Vincent A. Blomen, Elmer Stickel, Rosina Plomp, Sophie Bliss, Matthijs Raaben, Antonius A. de Waard, René Platzer, Frans H.J. Claas, Arend Mulder, Manfred Wuhrer, Thijn R. Brummelkamp, and Jacques Neefjes
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T cell ,Cell ,Antigen presentation ,Glycosphingolipid ,Human leukocyte antigen ,Biology ,medicine.disease_cause ,Autoimmunity ,chemistry.chemical_compound ,medicine.anatomical_structure ,Immune system ,chemistry ,medicine ,Cancer research ,lipids (amino acids, peptides, and proteins) ,CD8 - Abstract
SummaryHLA class I (HLA-I) drives immune responses by presenting antigen-derived peptides to cognate CD8+T cells. This process is often hijacked by tumors and pathogens for immune evasion. Since therapeutic options for restoring HLA-I antigen presentation are limited, we aimed to identify new HLA-I pathway targets. By iterative genome-wide screens we uncovered that the cell surface glycosphingolipid (GSL) repertoire determines effective HLA-I antigen presentation. We show that absence of the protease SPPL3 augments B3GNT5 enzyme activity, resulting in upregulated levels of surface (neo)lacto-series GSLs. These GSLs sterically impede molecular interactions with HLA-I and diminish CD8+T cell activation. In accordance, a disturbed SPPL3-B3GNT5 pathway in glioma associates with decreased patient survival. Importantly, we show that this immunomodulatory effect can be reversed through GSL synthesis inhibition using clinically approved drugs. Overall, our study identifies a GSL signature that functionally inhibits antigen presentation and represents a potential therapeutic target in cancer, infection and autoimmunity.
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- 2020
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8. The SPPL3-Defined Glycosphingolipid Repertoire Regulates Immune Responses by Improving HLA Class I Access
- Author
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Johannes B. Huppa, Jacques Neefjes, Anastasia Xagara, Matthijs Raaben, Marlieke L.M. Jongsma, Antonius A. de Waard, Robbert M. Spaapen, Sophie Bliss, Hermen S. Overkleeft, Rosina Plomp, Birol Cabukusta, Tao Zhang, Stephanie Holst, Vincent A. Blomen, Lennert Janssen, Soldano Ferrone, Mirjam H.M. Heemskerk, René Platzer, Arend Mulder, Tamara Verkerk, Marieke Griffioen, Frans H.J. Claas, Elmer Stickel, Manfred Wuhrer, and Thijn R. Brummelkamp
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T cell ,Cell ,Antigen presentation ,Glycosphingolipid ,Human leukocyte antigen ,Biology ,medicine.disease_cause ,Autoimmunity ,chemistry.chemical_compound ,medicine.anatomical_structure ,Immune system ,chemistry ,medicine ,Cancer research ,lipids (amino acids, peptides, and proteins) ,CD8 - Abstract
HLA class I (HLA-I) drives immune responses by presenting antigen-derived peptides to cognate CD8+ T cells. This process is often hijacked by tumors and pathogens for immune evasion. Since therapeutic options for restoring HLA-I antigen presentation are limited, we aimed to identify new HLA-I pathway targets. By iterative genome-wide screens we uncovered that the cell surface glycosphingolipid (GSL) repertoire determines effective HLA-I antigen presentation. We show that absence of the protease SPPL3 augments B3GNT5 enzyme activity, resulting in upregulated levels of surface (neo)lacto-series GSLs. These GSLs sterically impede molecular interactions with HLA-I and diminish CD8+ T cell activation. In accordance, a disturbed SPPL3-B3GNT5 pathway in glioma associates with decreased patient survival. Importantly, we show that this immunomodulatory effect can be reversed through GSL synthesis inhibition using clinically approved drugs. Overall, our study identifies a GSL signature that functionally inhibits antigen presentation and represents a potential therapeutic target in cancer, infection and autoimmunity.
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- 2020
- Full Text
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9. Haploid Mammalian Genetic Screen Identifies UBXD8 as a Key Determinant of HMGCR Degradation and Cholesterol Biosynthesis
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Noam Zelcer, Matthijs Raaben, Marlene van den Berg, Joseph Roitelman, Saskia Scheij, Elmer Stickel, Thijn R. Brummelkamp, Martina Moeton, Josephine M. E. Tan, Hila Gelberg-Etel, Anke Loregger, Medical Biochemistry, ACS - Diabetes & metabolism, ACS - Atherosclerosis & ischemic syndromes, Other departments, and AGEM - Amsterdam Gastroenterology Endocrinology Metabolism
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0301 basic medicine ,Proteasome Endopeptidase Complex ,Recombinant Fusion Proteins ,Coenzyme A ,Mevalonic Acid ,sterols ,Haploidy ,Reductase ,Biology ,Endoplasmic Reticulum ,Transfection ,Gene Expression Regulation, Enzymologic ,03 medical and health sciences ,chemistry.chemical_compound ,Biosynthesis ,Enzyme Stability ,Animals ,Humans ,Feedback, Physiological ,Microscopy, Confocal ,Basic Sciences ,Cholesterol ,Ubiquitination ,cholesterol ,Membrane Proteins ,mammalian haploid genetics ,Blood Proteins ,Hep G2 Cells ,Hydroxymethylglutaryl-CoA reductase ,hydroxymethylglutaryl CoA reductases ,Rats ,3. Good health ,Protein Transport ,030104 developmental biology ,chemistry ,Biochemistry ,Proteolysis ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,Hepatocytes ,oxysterols ,lipids (amino acids, peptides, and proteins) ,Mevalonate pathway ,CRISPR-Cas Systems ,Ploidy ,Cardiology and Cardiovascular Medicine ,Genetic screen - Abstract
Supplemental Digital Content is available in the text., Objective— The cellular demand for cholesterol requires control of its biosynthesis by the mevalonate pathway. Regulation of HMGCR (3-hydroxy-3-methylglutaryl coenzyme A reductase), a rate-limiting enzyme in this pathway and the target of statins, is a key control point herein. Accordingly, HMGCR is subject to negative and positive regulation. In particular, the ability of oxysterols and intermediates of the mevalonate pathway to stimulate its proteasomal degradation is an exquisite example of metabolically controlled feedback regulation. To define the genetic determinants that govern this process, we conducted an unbiased haploid mammalian genetic screen. Approach and Results— We generated human haploid cells with mNeon fused to endogenous HMGCR using CRISPR/Cas9 and used these cells to interrogate regulation of HMGCR abundance in live cells. This resulted in identification of known and new regulators of HMGCR, and among the latter, UBXD8 (ubiquitin regulatory X domain-containing protein 8), a gene that has not been previously implicated in this process. We demonstrate that UBXD8 is an essential determinant of metabolically stimulated degradation of HMGCR and of cholesterol biosynthesis in multiple cell types. Accordingly, UBXD8 ablation leads to aberrant cholesterol synthesis due to loss of feedback control. Mechanistically, we show that UBXD8 is necessary for sterol-stimulated dislocation of ubiquitylated HMGCR from the endoplasmic reticulum membrane en route to proteasomal degradation, a function dependent on its UBX domain. Conclusions— We establish UBXD8 as a previously unrecognized determinant that couples flux across the mevalonate pathway to control of cholesterol synthesis and demonstrate the feasibility of applying mammalian haploid genetics to study metabolic traits.
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- 2017
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10. Glutaminyl cyclase is an enzymatic modifier of the CD47-SIRP alpha axis and a target for cancer immunotherapy
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Koen A. Marijt, Timo K. van den Berg, Arianne M. Brandsma, Matthijs Raaben, Raquel Gomez-Eerland, Ton N. Schumacher, Noor A. M. Bakker, Jacques Neefjes, Astrid Fauster, Thijn R. Brummelkamp, Mireille Toebes, Simone van der Schot, Jeanette H. W. Leusen, Joost H. van den Berg, Martijn Verdoes, Katka Franke, Hanke L. Matlung, Ferenc A. Scheeren, J. H. Marco Jansen, Meike Emma Willemijn Logtenberg, John B. A. G. Haanen, General Internal Medicine, AII - Cancer immunology, CCA - Cancer biology and immunology, and Landsteiner Laboratory
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0301 basic medicine ,medicine.medical_treatment ,T cell ,CD47 Antigen ,Mice, Transgenic ,Article ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,All institutes and research themes of the Radboud University Medical Center ,0302 clinical medicine ,Cancer immunotherapy ,Antigen ,Cell Line, Tumor ,Neoplasms ,medicine ,Animals ,Humans ,Receptors, Immunologic ,Tumor microenvironment ,Chemistry ,CD47 ,Cell Membrane ,General Medicine ,Immunotherapy ,Opsonin Proteins ,Aminoacyltransferases ,Antigens, Differentiation ,Immune checkpoint ,Pyrrolidonecarboxylic Acid ,3. Good health ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Cancer cell ,Nanomedicine Radboud Institute for Molecular Life Sciences [Radboudumc 19] - Abstract
Cancer cells are able to evade immune surveillance through the expression of inhibitory ligands that bind their cognate receptors on immune effector cells. Expression of Programmed Death-Ligand 1 (PD-L1) in tumor micro-environments is a major immune checkpoint for tumor-specific T cell responses, by binding to Programmed Cell Death protein-1 (PD-1) on activated and dysfunctional T cells1. The activity of myeloid cells, such as macrophages and neutrophils, is likewise regulated by a balance between stimulatory and inhibitory signals. In particular, cell surface expression of the CD47 protein has been shown to form a “don’t eat me” signal on tumor cells, by binding to SIRPα expressed on myeloid cells2–5. Using a haploid genetic screen, we here identify glutaminyl-peptide cyclotransferase-like (QPCTL) as a major component of the CD47-SIRPα checkpoint. Biochemical analysis demonstrates that QPCTL is critical for pyroglutamate formation on CD47 at the SIRPα binding site shortly after biosynthesis. Both genetic and pharmacological interference with QPCTL activity enhances antibody-dependent cellular phagocytosis and cellular cytotoxicity of tumor cells. Furthermore, interference with QPCTL expression leads to a major increase in neutrophil-mediated tumor cell killing in vivo. These data identify QPCTL as a novel target to interfere with the CD47 pathway, and thereby augment antibody therapy of cancer.
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- 2019
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11. Secretome screening reveals fibroblast growth factors as novel inhibitors of viral replication
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Matthijs Raaben, Robbert M. Spaapen, Benjamin Nota, Saskia D. van Asten, AII - Infectious diseases, Graduate School, Landsteiner Laboratory, and Laboratory Medicine
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0301 basic medicine ,viruses ,Immunology ,Cell Culture Techniques ,Biology ,Coxsackievirus ,Virus Replication ,Microbiology ,Vesicular stomatitis Indiana virus ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Viral entry ,Interferon ,Virology ,medicine ,Humans ,Gene Library ,chemistry.chemical_classification ,Hep G2 Cells ,Virus Internalization ,biology.organism_classification ,Virus-Cell Interactions ,Oncolytic virus ,Fibroblast Growth Factors ,HEK293 Cells ,030104 developmental biology ,Viral replication ,chemistry ,Vesicular stomatitis virus ,Culture Media, Conditioned ,Protein Biosynthesis ,030220 oncology & carcinogenesis ,Insect Science ,Oncolytic Virus Therapy ,Glycoprotein ,medicine.drug - Abstract
Cellular antiviral programs can efficiently inhibit viral infection. These programs are often initiated through signaling cascades induced by secreted proteins, such as type I interferons, interleukin-6 (IL-6), or tumor necrosis factor alpha (TNF-α). In the present study, we generated an arrayed library of 756 human secreted proteins to perform a secretome screen focused on the discovery of novel modulators of viral entry and/or replication. The individual secreted proteins were tested for the capacity to inhibit infection by two replication-competent recombinant vesicular stomatitis viruses (VSVs) with distinct glycoproteins utilizing different entry pathways. Fibroblast growth factor 16 (FGF16) was identified and confirmed as the most prominent novel inhibitor of both VSVs and therefore of viral replication, not entry. Importantly, an antiviral interferon signature was completely absent in FGF16-treated cells. Nevertheless, the antiviral effect of FGF16 is broad, as it was evident on multiple cell types and also on infection by coxsackievirus. In addition, other members of the FGF family also inhibited viral infection. Thus, our unbiased secretome screen revealed a novel protein family capable of inducing a cellular antiviral state. This previously unappreciated role of the FGF family may have implications for the development of new antivirals and the efficacy of oncolytic virus therapy.IMPORTANCE Viruses infect human cells in order to replicate, while human cells aim to resist infection. Several cellular antiviral programs have therefore evolved to resist infection. Knowledge of these programs is essential for the design of antiviral therapeutics in the future. The induction of antiviral programs is often initiated by secreted proteins, such as interferons. We hypothesized that other secreted proteins may also promote resistance to viral infection. Thus, we tested 756 human secreted proteins for the capacity to inhibit two pseudotypes of vesicular stomatitis virus (VSV). In this secretome screen on viral infection, we identified fibroblast growth factor 16 (FGF16) as a novel antiviral against multiple VSV pseudotypes as well as coxsackievirus. Subsequent testing of other FGF family members revealed that FGF signaling generally inhibits viral infection. This finding may lead to the development of new antivirals and may also be applicable for enhancing oncolytic virus therapy.
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- 2018
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12. Viral escape from endosomes and host detection at a glance
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Matthijs Raaben, Jacqueline Staring, and Thijn R. Brummelkamp
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0301 basic medicine ,Endosome ,viruses ,Cell ,Endocytic cycle ,Lipid bilayer fusion ,Endosomes ,Intracellular Membranes ,Cell Biology ,Virus Internalization ,Biology ,Virus Replication ,Virus ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,medicine.anatomical_structure ,Viral replication ,Viruses ,Host cell cytoplasm ,medicine ,Animals ,Humans ,Compartment (development) - Abstract
In order to replicate, most pathogens need to enter their target cells. Many viruses enter the host cell through an endocytic pathway and hijack endosomes for their journey towards sites of replication. For delivery of their genome to the host cell cytoplasm and to avoid degradation, viruses have to escape this endosomal compartment without host detection. Viruses have developed complex mechanisms to penetrate the endosomal membrane and have evolved to co-opt several host factors to facilitate endosomal escape. Conversely, there is an extensive variety of cellular mechanisms to counteract or impede viral replication. At the level of cell entry, there are cellular defense mechanisms that recognize endosomal membrane damage caused by virus-induced membrane fusion and pore formation, as well as restriction factors that block these processes. In this Cell Science at a Glance article and accompanying poster, we describe the different mechanisms that viruses have evolved to escape the endosomal compartment, as well as the counteracting cellular protection mechanisms. We provide examples for enveloped and non-enveloped viruses, for which we discuss some unique and unexpected cellular responses to virus-entry-induced membrane damage.
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- 2018
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13. Reconstruction of the cell entry pathway of an extinct virus
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Kevin R. McCarthy, Matthijs Raaben, Mark J. G. Bakkers, Sarah H. Stubbs, Joppe Nieuwenhuis, Sean P. J. Whelan, Lindsey R. Robinson-McCarthy, and Silvia Piccinotti
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0301 basic medicine ,RNA viruses ,Genetic Screens ,viruses ,Gene Identification and Analysis ,Endogenous retrovirus ,Pathology and Laboratory Medicine ,law.invention ,chemistry.chemical_compound ,Spectrum Analysis Techniques ,Viral Envelope Proteins ,law ,Medicine and Health Sciences ,lcsh:QH301-705.5 ,Heparan Sulfate Biosynthesis ,0303 health sciences ,biology ,Sulfates ,030302 biochemistry & molecular biology ,Drugs ,Heparan sulfate ,Flow Cytometry ,3. Good health ,Chemistry ,Vesicular stomatitis virus ,Vesicular Stomatitis Virus ,Medical Microbiology ,Spectrophotometry ,Viral Pathogens ,Physical Sciences ,Viruses ,Recombinant DNA ,293T cells ,Cell lines ,Cytophotometry ,Pathogens ,Biological cultures ,Research Article ,lcsh:Immunologic diseases. Allergy ,Cell Binding ,Cell Physiology ,Immunology ,Research and Analysis Methods ,Microbiology ,Virus ,Rhabdoviruses ,03 medical and health sciences ,Virology ,Retroviruses ,Genetics ,Humans ,Molecular Biology ,Microbial Pathogens ,030304 developmental biology ,Pharmacology ,030102 biochemistry & molecular biology ,Biology and life sciences ,Heparin ,Endogenous Retroviruses ,Chemical Compounds ,Organisms ,Cell Biology ,Virus Internalization ,biology.organism_classification ,Fusion protein ,Viral Tropism ,030104 developmental biology ,lcsh:Biology (General) ,chemistry ,Parasitology ,Salts ,Heparitin Sulfate ,lcsh:RC581-607 ,Genetic screen - Abstract
Endogenous retroviruses (ERVs), remnants of ancient germline infections, comprise 8% of the human genome. The most recently integrated includes human ERV-K (HERV-K) where several envelope (env) sequences remain intact. Viral pseudotypes decorated with one of those Envs are infectious. Using a recombinant vesicular stomatitis virus encoding HERV-K Env as its sole attachment and fusion protein (VSV-HERVK) we conducted a genome-wide haploid genetic screen to interrogate the host requirements for infection. This screen identified 11 genes involved in heparan sulfate biosynthesis. Genetic inhibition or chemical removal of heparan sulfate and addition of excess soluble heparan sulfate inhibit infection. Direct binding of heparin to soluble HERV-K Env and purified VSV-HERVK defines it as critical for viral attachment. Cell surface bound VSV-HERVK particles are triggered to infect on exposure to acidic pH, whereas acid pH pretreatment of virions blocks infection. Testing of additional endogenous HERV-K env sequences reveals they bind heparin and mediate acid pH triggered fusion. This work reconstructs and defines key steps in the infectious entry pathway of an extinct virus., Author summary The genomes of all vertebrates are littered with the remains of once exogenous retroviruses. The properties of these ancient viruses that fostered germline colonization and their subsequent inheritance as genetic elements are largely unknown. The viral envelope protein (Env) dictates the cell entry pathway. Here we define host factors involved in the cell-entry of the youngest human ERV, HERV-K. Using a forward genetic screen, we identified heparan sulfate as a critical mediator of productive cell entry. The abundance of this carbohydrate on almost all cells in the body suggests that HERV-K endogenization was a consequence of a broad tropism and not a specific targeting of germ cells. We demonstrate that multiple HERV-K Env proteins encoded in the genome bind heparin. As HERV-K Envs are expressed in some transformed and virus-infected cells as well as during inflammation, it is tempting to speculate that this heparan sulfate binding property could be physiologically relevant during disease.
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- 2018
14. KREMEN1 Is a Host Entry Receptor for a Major Group of Enteroviruses
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Jacqueline Staring, Matthijs Raaben, Thijn R. Brummelkamp, Jan E. Carette, Lisa G. van den Hengel, and Vincent A. Blomen
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0301 basic medicine ,Male ,animal structures ,030106 microbiology ,Cell ,Disease ,Coxsackievirus ,Microbiology ,Cell Line ,03 medical and health sciences ,Gene Knockout Techniques ,Mice ,Protein Domains ,Virology ,Cell Line, Tumor ,Extracellular ,Paralysis ,medicine ,Enterovirus Infections ,Animals ,Humans ,Receptor ,Phylogeny ,Host factor ,Enterovirus ,biology ,Wnt signaling pathway ,Membrane Proteins ,Virus Internalization ,biology.organism_classification ,HCT116 Cells ,Enterovirus A, Human ,030104 developmental biology ,medicine.anatomical_structure ,HEK293 Cells ,Mutagenesis ,Antigens, Surface ,Parasitology ,Female ,medicine.symptom ,Hand, Foot and Mouth Disease - Abstract
Summary Human type A Enteroviruses (EV-As) cause diseases ranging from hand-foot-and-mouth disease to poliomyelitis-like disease. Although cellular receptors are identified for some EV-As, they remain elusive for the majority of EV-As. We identify the cell surface molecule KREMEN1 as an entry receptor for coxsackievirus A10 (CV-A10). Whereas loss of KREMEN1 renders cells resistant to CV-A10 infection, KREMEN1 overexpression enhances CV-A10 binding to the cell surface and increases susceptibility to infection, indicating that KREMEN1 is a rate-limiting factor for CV-A10 infection. Furthermore, the extracellular domain of KREMEN1 binds CV-A10 and functions as a neutralizing agent during infection. Kremen -deficient mice are resistant to CV-A10-induced lethal paralysis, emphasizing the relevance of Kremen for infection in vivo . KREMEN1 is also essential for infection by a phylogenetic and pathogenic related group of EV-As. Collectively these findings highlight the importance of KREMEN1 for these emerging pathogens and its potential as an antiviral therapeutic target.
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- 2017
15. NRP2 and CD63 Are Host Factors for Lujo Virus Cell Entry
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Matthijs Raaben, Andrew S. Herbert, Vincent A. Blomen, Sean P. J. Whelan, Sarah H. Stubbs, Yi-ying Chou, Thijn R. Brummelkamp, John M. Dye, Tomas Kirchhausen, Lucas T. Jae, and Ana I. Kuehne
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0301 basic medicine ,Hemorrhagic Fevers, Viral ,New World Arenavirus ,viruses ,030106 microbiology ,Transferrin receptor ,Receptors, Cell Surface ,Biology ,Microbiology ,Article ,Cell Line ,03 medical and health sciences ,Viral Proteins ,Tetraspanin ,Virology ,Receptors, Transferrin ,Human Umbilical Vein Endothelial Cells ,Humans ,Protein Interaction Domains and Motifs ,Lujo virus ,Arenavirus ,Tetraspanin 30 ,Virus Internalization ,biology.organism_classification ,Fusion protein ,3. Good health ,Neuropilin-2 ,030104 developmental biology ,Vesicular stomatitis virus ,Host-Pathogen Interactions ,Parasitology ,Carrier Proteins ,Viral Fusion Proteins ,Genetic screen - Abstract
Arenaviruses cause fatal haemorrhagic disease in humans. Old-World arenavirus glycoproteins (GPs) mainly engage α-dystroglycan as a cell surface receptor, while New-World arenaviruses hijack transferrin receptor. However, the Lujo virus (LUJV) glycoprotein does not cluster with New-or Old-world arenaviruses. Using a recombinant vesicular stomatitis virus containing LUJV glycoprotein (LUJV GP) as its sole attachment and fusion protein (VSV-LUJV), we demonstrate that infection is independent of known arenavirus receptor genes. A genome-wide haploid genetic screen identified the transmembrane protein neuropilin 2 (NRP2) and tetraspanin CD63 as factors for LUJV GP-mediated infection. LUJV GP binds the N-terminal domain of NRP2, while CD63 stimulates pH-activated LUJV GP-mediated membrane fusion. Overexpression of NRP2 or its N-terminal domain enhances VSV-LUJV infection, and cells lacking NRP2 are deficient in wild-type LUJV infection. These findings uncover this distinct set of host cell entry factors in LUJV infection and are attractive focus points for therapeutic intervention.
- Published
- 2017
16. Lassa virus entry requires a trigger-induced receptor switch
- Author
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Andrew S. Herbert, Matthijs Raaben, Timothy K. Soh, Paul Saftig, Hans Janssen, John M. Dye, Ariel S. Wirchnianski, Markus Damme, Lucas T. Jae, Sean P. J. Whelan, Ana I. Kuehne, Thijn R. Brummelkamp, and Sarah H. Stubbs
- Subjects
chemistry.chemical_classification ,Multidisciplinary ,LAMP1 ,viruses ,Biology ,medicine.disease ,medicine.disease_cause ,Virology ,Virus ,Lassa virus ,chemistry ,Viral entry ,medicine ,Glycoprotein ,Receptor ,Lassa fever ,Tropism - Abstract
How Lassa virus breaks and enters Lassa virus, which spreads from rodents to humans, infecting about half a million people every year, can lead to deadly hemorrhagic fever. Like many viruses, Lassa virus binds to cell surface receptors. Jae et al. now show that to enter a cell, the virus requires a second receptor, this one inside the infected cell. This requirement sheds light on the “enigmatic resistance” of bird cells to Lassa virus observed three decades ago. Although bird cells have the cell surface receptor, the intracellular receptor cannot bind the virus, stopping it in its tracks. Science , this issue p. 1506
- Published
- 2014
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17. A Single Residue in Ebola Virus Receptor NPC1 Influences Cellular Host Range in Reptiles
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Thijn R. Brummelkamp, Rohan Biswas, Gregor Obernosterer, Ariel S. Wirchnianski, Esther Ndungo, Andrew S. Herbert, John M. Dye, Jan E. Carette, Matthijs Raaben, Sean P. J. Whelan, Emily Happy Miller, and Kartik Chandran
- Subjects
filovirus ,0301 basic medicine ,congenital, hereditary, and neonatal diseases and abnormalities ,VIPeR ,030106 microbiology ,Mutant ,lcsh:QR1-502 ,Virulence ,Biology ,medicine.disease_cause ,intracellular receptor ,Microbiology ,lcsh:Microbiology ,Host-Microbe Biology ,Ebola virus ,03 medical and health sciences ,hemic and lymphatic diseases ,medicine ,Niemann-Pick C1 ,Molecular Biology ,Gene ,virus-host interactions ,chemistry.chemical_classification ,endosomal receptor ,nutritional and metabolic diseases ,Virology ,QR1-502 ,reptiles ,NPC1 ,3. Good health ,030104 developmental biology ,chemistry ,Viral Receptor ,Glycoprotein ,viral receptor ,Research Article - Abstract
Identifying cellular factors that determine susceptibility to infection can help us understand how Ebola virus is transmitted. We asked if the EBOV receptor Niemann-Pick C1 (NPC1) could explain why reptiles are resistant to EBOV infection. We demonstrate that cells derived from the Russell’s viper are not susceptible to infection because EBOV cannot bind to viper NPC1. This resistance to infection can be mapped to a single amino acid residue in viper NPC1 that renders it unable to bind to EBOV GP. The newly solved structure of EBOV GP bound to NPC1 confirms our findings, revealing that this residue dips into the GP receptor-binding pocket and is therefore critical to the binding interface. Consequently, this otherwise well-conserved residue in vertebrate species influences the ability of reptilian NPC1 proteins to bind to EBOV GP, thereby affecting viral host range in reptilian cells., Filoviruses are the causative agents of an increasing number of disease outbreaks in human populations, including the current unprecedented Ebola virus disease (EVD) outbreak in western Africa. One obstacle to controlling these epidemics is our poor understanding of the host range of filoviruses and their natural reservoirs. Here, we investigated the role of the intracellular filovirus receptor, Niemann-Pick C1 (NPC1) as a molecular determinant of Ebola virus (EBOV) host range at the cellular level. Whereas human cells can be infected by EBOV, a cell line derived from a Russell’s viper (Daboia russellii) (VH-2) is resistant to infection in an NPC1-dependent manner. We found that VH-2 cells are resistant to EBOV infection because the Russell’s viper NPC1 ortholog bound poorly to the EBOV spike glycoprotein (GP). Analysis of panels of viper-human NPC1 chimeras and point mutants allowed us to identify a single amino acid residue in NPC1, at position 503, that bidirectionally influenced both its binding to EBOV GP and its viral receptor activity in cells. Significantly, this single residue change perturbed neither NPC1’s endosomal localization nor its housekeeping role in cellular cholesterol trafficking. Together with other recent work, these findings identify sequences in NPC1 that are important for viral receptor activity by virtue of their direct interaction with EBOV GP and suggest that they may influence filovirus host range in nature. Broader surveys of NPC1 orthologs from vertebrates may delineate additional sequence polymorphisms in this gene that control susceptibility to filovirus infection. IMPORTANCE Identifying cellular factors that determine susceptibility to infection can help us understand how Ebola virus is transmitted. We asked if the EBOV receptor Niemann-Pick C1 (NPC1) could explain why reptiles are resistant to EBOV infection. We demonstrate that cells derived from the Russell’s viper are not susceptible to infection because EBOV cannot bind to viper NPC1. This resistance to infection can be mapped to a single amino acid residue in viper NPC1 that renders it unable to bind to EBOV GP. The newly solved structure of EBOV GP bound to NPC1 confirms our findings, revealing that this residue dips into the GP receptor-binding pocket and is therefore critical to the binding interface. Consequently, this otherwise well-conserved residue in vertebrate species influences the ability of reptilian NPC1 proteins to bind to EBOV GP, thereby affecting viral host range in reptilian cells.
- Published
- 2016
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18. Ebola virus entry requires the host-programmed recognition of an intracellular receptor
- Author
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Ana I. Kuehne, Matthijs Raaben, John M. Dye, Anuja Krishnan, Maika S. Deffieu, Gregor Obernosterer, Rohini G. Sandesara, Esther Ndungo, Sean P. J. Whelan, Andrew S. Herbert, Jan E. Carette, Kartik Chandran, Emily Happy Miller, Gordon Ruthel, Suzanne R. Pfeffer, and Thijn R. Brummelkamp
- Subjects
congenital, hereditary, and neonatal diseases and abnormalities ,Ebola virus ,General Immunology and Microbiology ,Endosome ,General Neuroscience ,nutritional and metabolic diseases ,Plasma protein binding ,Biology ,medicine.disease_cause ,Virology ,General Biochemistry, Genetics and Molecular Biology ,Viral entry ,Viral Receptor ,hemic and lymphatic diseases ,Intracellular receptor ,medicine ,NPC1 ,Receptor ,Molecular Biology - Abstract
Ebola and Marburg filoviruses cause deadly outbreaks of haemorrhagic fever. Despite considerable efforts, no essential cellular receptors for filovirus entry have been identified. We showed previously that Niemann-Pick C1 (NPC1), a lysosomal cholesterol transporter, is required for filovirus entry. Here, we demonstrate that NPC1 is a critical filovirus receptor. Human NPC1 fulfills a cardinal property of viral receptors: it confers susceptibility to filovirus infection when expressed in non-permissive reptilian cells. The second luminal domain of NPC1 binds directly and specifically to the viral glycoprotein, GP, and a synthetic single-pass membrane protein containing this domain has viral receptor activity. Purified NPC1 binds only to a cleaved form of GP that is generated within cells during entry, and only viruses containing cleaved GP can utilize a receptor retargeted to the cell surface. Our findings support a model in which GP cleavage by endosomal cysteine proteases unmasks the binding site for NPC1, and GP–NPC1 engagement within lysosomes promotes a late step in entry proximal to viral escape into the host cytoplasm. NPC1 is the first known viral receptor that recognizes its ligand within an intracellular compartment and not at the plasma membrane.
- Published
- 2012
- Full Text
- View/download PDF
19. The Ebola virus glycoprotein mediates entry via a non-classical dynamin-dependent macropinocytic pathway
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Matthijs Raaben, Sean P. J. Whelan, Kartik Chandran, Nirupama Mulherkar, and Juan Carlos de la Torre
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medicine.disease_cause ,Monocytes ,Amiloride ,Ebola virus ,Dynamin II ,Mice ,Viral Envelope Proteins ,Chlorocebus aethiops ,Internalization ,media_common ,Host cell surface ,0303 health sciences ,Pinocytosis ,Viral entry ,Virus-like particles ,Ebolavirus ,Endocytosis ,3. Good health ,Cell biology ,Vesicular stomatitis virus ,Pak-1 ,media_common.quotation_subject ,Biology ,Article ,Cell Line ,03 medical and health sciences ,Antigen presenting cells ,Virology ,medicine ,Animals ,Humans ,Vero Cells ,030304 developmental biology ,Dynamin ,Macropinocytosis ,030306 microbiology ,Hydrazones ,Dendritic Cells ,Vesiculovirus ,Virus Internalization ,Filovirus ,Actins ,Microscopy, Electron ,Viral infection ,Vero cell ,Glycoprotein - Abstract
Ebola virus (EBOV) has been reported to enter cultured cell lines via a dynamin-2-independent macropinocytic pathway or clathrin-mediated endocytosis. The route(s) of productive EBOV internalization into physiologically relevant cell types remain unexplored, and viral-host requirements for this process are incompletely understood. Here, we use electron microscopy and complementary chemical and genetic approaches to demonstrate that the viral glycoprotein, GP, induces macropinocytic uptake of viral particles into cells. GP's highly-glycosylated mucin domain is dispensable for virus-induced macropinocytosis, arguing that interactions between other sequences in GP and the host cell surface are responsible. Unexpectedly, we also found a requirement for the large GTPase dynamin-2, which is proposed to be dispensable for several types of macropinocytosis. Our results provide evidence that EBOV uses an atypical dynamin-dependent macropinocytosis-like entry pathway to enter Vero cells, adherent human peripheral blood-derived monocytes, and a mouse dendritic cell line.
- Published
- 2011
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20. Ebola virus entry requires the cholesterol transporter Niemann-Pick C1
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Gordon Ruthel, John M. Dye, Ana I. Kuehne, Kartik Chandran, Sean P. J. Whelan, Gregor Obernosterer, Paola Dal Cin, April M. Griffin, Philip J. Kranzusch, Anthony C. Wong, Nirupama Mulherkar, Jan E. Carette, Andrew S. Herbert, Thijn R. Brummelkamp, and Matthijs Raaben
- Subjects
Ebolavirus ,0303 health sciences ,Multidisciplinary ,Ebola virus ,biology ,viruses ,030302 biochemistry & molecular biology ,Marburgvirus ,biology.organism_classification ,medicine.disease_cause ,medicine.disease ,Virology ,Article ,3. Good health ,Cell biology ,03 medical and health sciences ,VP40 ,Marburg virus disease ,Viral entry ,medicine ,NPC1 ,030304 developmental biology ,Ebola virus and Marburg virus - Abstract
The extraordinary virulence of the Ebola and Marburg filoviruses has spurred intensive research into the molecular mechanisms by which they multiply and cause disease. Carette et al. use a genome-wide genetic screen in human cells to identify factors required for entry of Ebola virus. The screen uncovered 67 mutations disrupting all six members of the homotypic fusion and vacuole protein-sorting (HOPS) multisubunit tethering complex, which is involved in the fusion of endosomes to lysosomes, and 39 independent mutations that disrupt the endo/lysosomal cholesterol transporter protein Niemann–Pick C1 (NPC1). Cote et al. report the identification of a novel benzylpiperazine adamantane diamide-derived compound that inhibits EboV infection in cell culture, with NPC1 being the target. The unexpected role for the hereditary disease gene NPC1 in Ebola virus infection may facilitate the development of antifilovirus therapeutics. Infections by the Ebola and Marburg filoviruses cause a rapidly fatal haemorrhagic fever in humans for which no approved antivirals are available1. Filovirus entry is mediated by the viral spike glycoprotein (GP), which attaches viral particles to the cell surface, delivers them to endosomes and catalyses fusion between viral and endosomal membranes2. Additional host factors in the endosomal compartment are probably required for viral membrane fusion; however, despite considerable efforts, these critical host factors have defied molecular identification3,4,5. Here we describe a genome-wide haploid genetic screen in human cells to identify host factors required for Ebola virus entry. Our screen uncovered 67 mutations disrupting all six members of the homotypic fusion and vacuole protein-sorting (HOPS) multisubunit tethering complex, which is involved in the fusion of endosomes to lysosomes6, and 39 independent mutations that disrupt the endo/lysosomal cholesterol transporter protein Niemann–Pick C1 (NPC1)7. Cells defective for the HOPS complex or NPC1 function, including primary fibroblasts derived from human Niemann–Pick type C1 disease patients, are resistant to infection by Ebola virus and Marburg virus, but remain fully susceptible to a suite of unrelated viruses. We show that membrane fusion mediated by filovirus glycoproteins and viral escape from the vesicular compartment require the NPC1 protein, independent of its known function in cholesterol transport. Our findings uncover unique features of the entry pathway used by filoviruses and indicate potential antiviral strategies to combat these deadly agents.
- Published
- 2011
21. Intermediate filaments enable pathogen docking to trigger type 3 effector translocation
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Bobby Brooke Herrera, Sean P. J. Whelan, Leigh A. Baxt, Matthijs Raaben, Brian C. Russo, Yang Fu, Lindsey R. Robinson, Luisa M. Stamm, Emily Rose Kahoud, Ana L. Queiroz, Gabriel E. Molina, Nirit Mor-Vaknin, Sayantan Bose, David M. Markovitz, Caleb M. Kim, and Marcia B. Goldberg
- Subjects
0301 basic medicine ,Microbiology (medical) ,Salmonella typhimurium ,Virulence Factors ,030106 microbiology ,Immunology ,Vimentin ,Plasma protein binding ,macromolecular substances ,Biology ,Applied Microbiology and Biotechnology ,Microbiology ,Bacterial Adhesion ,Article ,Type three secretion system ,Cell Line ,Shigella flexneri ,03 medical and health sciences ,Mice ,Genetics ,Type III Secretion Systems ,Animals ,Humans ,Secretion ,Intermediate filament ,Antigens, Bacterial ,Keratin-18 ,Effector ,Cell Biology ,biochemical phenomena, metabolism, and nutrition ,Translocon ,Cell biology ,Transport protein ,Protein Transport ,Yersinia pseudotuberculosis ,Host-Pathogen Interactions ,biology.protein ,bacteria ,Protein Binding - Abstract
Type 3 secretion systems (T3SSs) of bacterial pathogens translocate bacterial effector proteins that mediate disease into the eukaryotic cytosol. Effectors traverse the plasma membrane through a translocon pore formed by T3SS proteins. In a genome-wide selection, we identified the intermediate filament vimentin as required for infection by the T3SS-dependent pathogen S. flexneri. We found that vimentin is required for efficient T3SS translocation of effectors by S. flexneri and other pathogens that use T3SS, Salmonella enterica serovar Typhimurium and Yersinia pseudotuberculosis. Vimentin and the intestinal epithelial intermediate filament keratin 18 interact with the C-terminus of the Shigella translocon pore protein IpaC. Vimentin and its interaction with IpaC are dispensable for pore formation, but are required for stable docking of S. flexneri to cells; moreover, stable docking triggers effector secretion. These findings establish that stable docking of the bacterium specifically requires intermediate filaments, is a process distinct from pore formation, and is a prerequisite for effector secretion.
- Published
- 2015
22. A haploid mammalian genetic screen identifies UBXD8 as a key determinant of sterol-stimulated degradation of HMGCR and cholesterol synthesis
- Author
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Saskia Scheij, Martina Moeton, Hela Gelberg, Thijn R. Brummelkamp, Josephine M. E. Tan, Anke Loregger-Wiesmann, Joseph Roitelman, Elmer Stickel, Matthijs Raaben, and Noam Zelcer
- Subjects
Genetics ,Cholesterol synthesis ,Ploidy ,Biology ,Cardiology and Cardiovascular Medicine ,Sterol ,Genetic screen - Published
- 2017
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23. Identification of potential immunotherapeutic targets in antigen presentation and costimulation networks
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Robbert M. Spaapen, Marlieke L.M. Jongsma, Thijn R. Brummelkamp, Peter A. van Veelen, Vincent A. Blomen, Lennert Janssen, Jacques Neefjes, Matthijs Raaben, and George M.C. Janssen
- Subjects
Pharmacology ,Cancer Research ,biology ,medicine.medical_treatment ,Immunology ,Antigen presentation ,chemical and pharmacologic phenomena ,Immunotherapy ,Mhc antigens ,Antigen Presentation Pathway ,Major histocompatibility complex ,Costimulatory Molecule ,Immune system ,Oncology ,Poster Presentation ,biology.protein ,medicine ,Molecular Medicine ,Immunology and Allergy - Abstract
Meeting abstracts Anti-tumor immune responses are often hampered by an excess of coinhibition of T cells, but also by a lack of MHC antigen presentation and costimulation. The latter are not yet successfully exploited as targets for immunotherapy, while augmenting MHC and costimulatory molecules
- Published
- 2014
- Full Text
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24. Virus entry. Lassa virus entry requires a trigger-induced receptor switch
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Lucas T, Jae, Matthijs, Raaben, Andrew S, Herbert, Ana I, Kuehne, Ariel S, Wirchnianski, Timothy K, Soh, Sarah H, Stubbs, Hans, Janssen, Markus, Damme, Paul, Saftig, Sean P, Whelan, John M, Dye, and Thijn R, Brummelkamp
- Subjects
Glycosylation ,beta-Galactoside alpha-2,3-Sialyltransferase ,viruses ,Molecular Sequence Data ,Article ,Cell Line ,Mice ,Lassa Fever ,Viral Envelope Proteins ,Lysosomal-Associated Membrane Protein 1 ,Animals ,Humans ,Amino Acid Sequence ,Dystroglycans ,Lassa virus ,Cells, Cultured ,Mice, Knockout ,Cell Membrane ,virus diseases ,Hydrogen-Ion Concentration ,Virus Internalization ,Sialyltransferases ,Receptors, Virus ,Lysosomes ,Chickens ,Protein Binding - Abstract
Lassa virus spreads from rodents to humans and can lead to lethal hemorrhagic fever. Despite its broad tropism, chicken cells were reported to resist infection thirty years ago. We show that Lassa virus readily engaged its cell surface receptor α-dystroglycan in avian cells, but virus entry in susceptible species involved a pH-dependent switch to an intracellular receptor, the lysosome-resident protein LAMP1. Iterative haploid screens revealed that the sialyltransferase ST3GAL4 was required for the interaction of the virus glycoprotein with LAMP1. A single glycosylated residue in LAMP1, present in susceptible species but absent in birds, was essential for interaction with the Lassa virus envelope protein and subsequent infection. The resistance of Lamp1-deficient mice to Lassa virus highlights the relevance of this receptor switch in vivo.
- Published
- 2014
25. Deciphering The Glycosylome Of Dystroglycanopathies Using Haploid Screens For Lassa Virus Entry
- Author
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Matthijs Raaben, Sean P. J. Whelan, Peter Meinecke, Marja W. Wessels, Dirk Lefeber, Hans van Bokhoven, Ellen van Beusekom, Arno Velds, Thijn R. Brummelkamp, Haluk Topaloglu, Ron M. Kerkhoven, Vincent A. Blomen, Moniek Riemersma, Lucas T. Jae, Jan E. Carette, Çocuk Sağlığı ve Hastalıkları, and Clinical Genetics
- Subjects
Male ,Glycosylation ,Proteome ,Haploidy ,medicine.disease_cause ,chemistry.chemical_compound ,0302 clinical medicine ,Dystroglycans ,Lassa fever ,Genetics ,0303 health sciences ,Mutation ,Multidisciplinary ,biology ,Walker-Warburg Syndrome ,Pedigree ,3. Good health ,Host-Pathogen Interactions ,Science & Technology - Other Topics ,Female ,lipids (amino acids, peptides, and proteins) ,musculoskeletal diseases ,Glycan ,DCN MP - Plasticity and memory ,Molecular Sequence Data ,Article ,Cell Line ,03 medical and health sciences ,Lassa Fever ,medicine ,Humans ,Amino Acid Sequence ,Pentosyltransferases ,Lassa virus ,Glycostation disorders [DCN PAC - Perception action and control IGMD 4] ,Gene ,DCN NN - Brain networks and neuronal communication ,030304 developmental biology ,Infant ,Membrane Proteins ,Virus Internalization ,Glycostation disorders [IGMD 4] ,medicine.disease ,Virology ,Genetics and epigenetic pathways of disease DCN MP - Plasticity and memory [NCMLS 6] ,carbohydrates (lipids) ,Membrane protein ,chemistry ,biology.protein ,030217 neurology & neurosurgery - Abstract
Viruses and Congenital Disorders Mutations in genes involved in α-dystroglycan O-linked glycosylation result in posttranslation modifications associated with the congenital disease Walker-Warburg syndrome (WWS). This cellular modification is also required for efficient Lassa virus infection of cells. Jae et al. (p. 479 , published online 21 March) screened for genes involved in O-glycosylation that affected Lassa virus infection and identified candidates involved in glycosylation. Individuals from different pedigrees exhibiting WWS had unique mutations among genes identified in the genetic screen. Thus, comprehensive forward genetic screens can be used to define the genetic architecture of a complex disease.
- Published
- 2013
26. CD200 Receptor Controls Sex-Specific TLR7 Responses to Viral Infection
- Author
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Peter J. M. Rottier, Cornelis A. M. de Haan, Guy C. M. Grinwis, Frank E. J. Coenjaerts, Maaike E. Ressing, Tomasz P. Rygiel, Matthijs Raaben, Linde Meyaard, and Guruswamy Karnam
- Subjects
Viral Diseases ,Neutrophils ,medicine.disease_cause ,Mice ,Interferon ,Influenza A virus ,Receptor ,Immune Response ,lcsh:QH301-705.5 ,Mice, Knockout ,Toll-like receptor ,Sex Characteristics ,Membrane Glycoproteins ,virus diseases ,Infectious Diseases ,Neutrophil Infiltration ,Interferon Type I ,Medicine ,Female ,Coronavirus Infections ,medicine.drug ,Research Article ,Signal Transduction ,lcsh:Immunologic diseases. Allergy ,Immunology ,Biology ,Microbiology ,Virus ,Immunomodulation ,Immune system ,Orthomyxoviridae Infections ,Antigens, CD ,Virology ,Genetics ,medicine ,Animals ,Molecular Biology ,Immunity to Infections ,Inflammation ,SARS ,Murine hepatitis virus ,Immunity ,Immunoregulation ,TLR7 ,Influenza ,Mice, Inbred C57BL ,Toll-Like Receptor 7 ,lcsh:Biology (General) ,Parasitology ,Clinical Immunology ,lcsh:RC581-607 ,Interferon type I - Abstract
Immunological checkpoints, such as the inhibitory CD200 receptor (CD200R), play a dual role in balancing the immune system during microbial infection. On the one hand these inhibitory signals prevent excessive immune mediated pathology but on the other hand they may impair clearance of the pathogen. We studied the influence of the inhibitory CD200-CD200R axis on clearance and pathology in two different virus infection models. We find that lack of CD200R signaling strongly enhances type I interferon (IFN) production and viral clearance and improves the outcome of mouse hepatitis corona virus (MHV) infection, particularly in female mice. MHV clearance is known to be dependent on Toll like receptor 7 (TLR7)-mediated type I IFN production and sex differences in TLR7 responses previously have been reported for humans. We therefore hypothesize that CD200R ligation suppresses TLR7 responses and that release of this inhibition enlarges sex differences in TLR7 signaling. This hypothesis is supported by our findings that in vivo administration of synthetic TLR7 ligand leads to enhanced type I IFN production, particularly in female Cd200−/− mice and that CD200R ligation inhibits TLR7 signaling in vitro. In influenza A virus infection we show that viral clearance is determined by sex but not by CD200R signaling. However, absence of CD200R in influenza A virus infection results in enhanced lung neutrophil influx and pathology in females. Thus, CD200-CD200R and sex are host factors that together determine the outcome of viral infection. Our data predict a sex bias in both beneficial and pathological immune responses to virus infection upon therapeutic targeting of CD200-CD200R., Author Summary Immune responses need to be carefully orchestrated to prevent disease due to an overactive immune system. Immunological checkpoints are provided by immune inhibitory receptors, which set a threshold for activation and dampen the immune system. In the case of a viral infection, this prevents pathology induced by the immune system, but on the other hand may prevent adequate removal of the virus. In this paper, we show that removal of such an immunological checkpoint in mice leads to rapid removal of corona virus, but also to more immune-induced disease symptoms in case of influenza virus infection. We observe this predominantly in female mice. We demonstrate that this particular checkpoint inhibits anti-viral responses that are naturally stronger in females. Release of this checkpoint enlarges these sex differences. Our findings have major implications for therapeutic use of blockers of this pathway, which are currently in clinical trials for the treatment of cancer, as we predict that female patients will have a stronger response to such therapeutics.
- Published
- 2012
- Full Text
- View/download PDF
27. Ebola virus entry requires the host-programmed recognition of an intracellular receptor
- Author
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Emily Happy, Miller, Gregor, Obernosterer, Matthijs, Raaben, Andrew S, Herbert, Maika S, Deffieu, Anuja, Krishnan, Esther, Ndungo, Rohini G, Sandesara, Jan E, Carette, Ana I, Kuehne, Gordon, Ruthel, Suzanne R, Pfeffer, John M, Dye, Sean P, Whelan, Thijn R, Brummelkamp, and Kartik, Chandran
- Subjects
Models, Molecular ,congenital, hereditary, and neonatal diseases and abnormalities ,Membrane Glycoproteins ,viruses ,Intracellular Signaling Peptides and Proteins ,nutritional and metabolic diseases ,Virus Internalization ,Ebolavirus ,Models, Biological ,Article ,Cell Line ,Viral Envelope Proteins ,Niemann-Pick C1 Protein ,hemic and lymphatic diseases ,Viperidae ,Animals ,Humans ,Receptors, Virus ,lipids (amino acids, peptides, and proteins) ,Carrier Proteins ,Protein Binding - Abstract
Ebola and Marburg filoviruses cause deadly outbreaks of haemorrhagic fever. Despite considerable efforts, no essential cellular receptors for filovirus entry have been identified. We showed previously that Niemann-Pick C1 (NPC1), a lysosomal cholesterol transporter, is required for filovirus entry. Here, we demonstrate that NPC1 is a critical filovirus receptor. Human NPC1 fulfills a cardinal property of viral receptors: it confers susceptibility to filovirus infection when expressed in non-permissive reptilian cells. The second luminal domain of NPC1 binds directly and specifically to the viral glycoprotein, GP, and a synthetic single-pass membrane protein containing this domain has viral receptor activity. Purified NPC1 binds only to a cleaved form of GP that is generated within cells during entry, and only viruses containing cleaved GP can utilize a receptor retargeted to the cell surface. Our findings support a model in which GP cleavage by endosomal cysteine proteases unmasks the binding site for NPC1, and GP-NPC1 engagement within lysosomes promotes a late step in entry proximal to viral escape into the host cytoplasm. NPC1 is the first known viral receptor that recognizes its ligand within an intracellular compartment and not at the plasma membrane.
- Published
- 2011
28. Cyclooxygenase activity is important for efficient replication of mouse hepatitis virus at an early stage of infection
- Author
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Michel van Houdt, Cornelis A. M. de Haan, Janneke Bouma, Hans A. Büller, Lucas J. A. Taminiau, Matthijs Raaben, Alexandra W. C. Einerhand, John W. A. Rossen, and Rolien H C Raatgeep
- Subjects
viruses ,Short Report ,Virus Replication ,medicine.disease_cause ,Virus ,lcsh:Infectious and parasitic diseases ,Viral Proteins ,Mouse hepatitis virus ,RNA interference ,Virology ,Gene expression ,medicine ,Humans ,Cyclooxygenase Inhibitors ,lcsh:RC109-216 ,Coronavirus ,Murine hepatitis virus ,Bovine leukemia virus ,biology ,virus diseases ,RNA ,biology.organism_classification ,Isoenzymes ,Infectious Diseases ,Viral replication ,Prostaglandin-Endoperoxide Synthases ,RNA, Viral ,RNA Interference ,Caco-2 Cells - Abstract
Cyclooxygenases (COXs) play a significant role in many different viral infections with respect to replication and pathogenesis. Here we investigated the role of COXs in the mouse hepatitis coronavirus (MHV) infection cycle. Blocking COX activity by different inhibitors or by RNA interference affected MHV infection in different cells. The COX inhibitors reduced MHV infection at a post-binding step, but early in the replication cycle. Both viral RNA and viral protein synthesis were affected with subsequent loss of progeny virus production. Thus, COX activity appears to be required for efficient MHV replication, providing a potential target for anti-coronaviral therapy.
- Published
- 2007
- Full Text
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29. Haploid genetic screening to identify novel regulators of MHC class I antigen presentation
- Author
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Thijn R. Brummelkamp, Jacques Neefjes, Vincent A. Blomen, Matthijs Raaben, and Robbert M. Spaapen
- Subjects
Genetics ,Presentation ,MHC class I antigen ,media_common.quotation_subject ,Immunology ,Ploidy ,Biology ,Molecular Biology ,media_common - Published
- 2012
- Full Text
- View/download PDF
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