29 results on '"Matthew Metz"'
Search Results
2. Hafnia-Based FeRAM: A Path Toward Ultra-High Density for Next-Generation High-Speed Embedded Memory
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Nazila Haratipour, Sou-Chi Chang, Shriram Shivaraman, Christopher Neumann, Yu-Ching Liao, Bernal G Alpizar, I-Cheng Tung, Hai Li, Vachan Kumar, Brian Doyle, Sarah Atanasov, Jason Peck, Nafees Kabir, Gary Allen, Thomas Hoff, Adedapo Oni, Sourav Dutta, Tristan Tronic, Anandi Roy, Fatih Hamzaoglu, Robert Bristol, Matthew Metz, Ian Young, Jack Kavalieros, and Uygar Avci
- Published
- 2022
- Full Text
- View/download PDF
3. Single Anastomosis Duodenal Switch: 1-Year Outcomes
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Daniel Cottam, Paul Enochs, Matthew Metz, Dana Portenier, Dennis Smith, and Mitchell Roslin
- Subjects
medicine.medical_specialty ,Duodenum ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,Gastric Bypass ,Type 2 diabetes ,Gastroenterology ,Quality of life ,Weight loss ,Internal medicine ,Vitamin D and neurology ,Humans ,Medicine ,Nutrition and Dietetics ,business.industry ,medicine.disease ,Micronutrient ,Comorbidity ,Duodenal switch ,Obesity, Morbid ,Diabetes Mellitus, Type 2 ,Quality of Life ,Surgery ,medicine.symptom ,business ,Body mass index - Abstract
Introduction Single-anastomosis duodenal switch has been suggested to be an effective bariatric procedure that offers excellent weight loss and by lengthening the common channel the potential to reduce micronutrient deficiencies. Purpose To evaluate the weight loss, comorbidity resolution and the 1-year nutritional outcomes of the single-anastomosis duodenal switch (SADS) procedure. Setting Multiple US Hospitals. Methods From October 2014 to January 2017, 120 patients were enrolled at six sites across the USA and underwent the SADS procedure. Weight loss, comorbidities, quality of life, and adverse events were followed post-procedure for 12 months. Results At 1, 6, and 12 months, 98.3%, 85.5%, and 77.1% of the patients were available for assessment, respectively. At 12 months, patients showed significantly reduced body mass index when compared to baseline (46.8 ± 5.8 vs 29.8 ± 4.4, P P Conclusions SADS is a highly efficacious weight loss procedure with significant comorbidity reduction at 1 year. At 1 year, complications and vitamin and mineral deficits appear to be consistent with other malabsorption operations. Long-term follow-up is needed, especially around complications and vitamin deficiencies.
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- 2020
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4. Bacillus Thuringiensis : A Cornerstone of Modern Agriculture
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Matthew Metz and Matthew Metz
- Abstract
Make the right decisions when it comes to pest control in agriculture!Bacillus thuringiensis: A Cornerstone of Modern Agriculture explores the impact that one of the most prominent biologically based pesticides has had on pest control technologyand the issues that surround its use. The book examines the development, use, and management of technologies derived from Bacillus thuringiensis (Bt), addressing the health, economic, environmental, and social concerns generated by the deployment of genetically engineered crops. Authors representing a diverse cross section of the international scientific community contribute review articles and research findings that address the use of Bt in microbial formulations and transgenic crops, technological advances in the genetic engineering of plants, advances in methodologies, and improved agricultural practices and productivity through the use of Bt cotton.Bacillus thuringiensis: A Cornerstone of Modern Agriculture examines the vital issues surrounding this Gram-positive bacterium. Contributors from academia, government, and industry address the safety of Bt for human consumption, its effects on non-target organisms, the role of microbial Bt products in crop production in the United States, and the utility and management of transgenic plants. The book also explores: engineering Bt transgenic rice for insect pest protection the Bt potato in developing countries Bt expression in sugarcane and cauliflower a comparative analysis of Bt cotton in Argentina the ecological impact, gene expression, and current resistance management requirements of Bt cotton in the United States and much more! Bacillus thuringiensis: A Cornerstone of Modern Agriculture is an essential resource for advanced students and technical specialists working in agriculture, biotechnology, entomology, pest management, and crop sciences. Stakeholders will also find it invaluable in regulatory decision making about genetically engineered crops, pesticide use, and crop protection.
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- 2024
5. State-of-the-Art Therapeutic Medical Countermeasures for Viral Threat Agents
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M. V. Stundick, Matthew Metz, Aruna Sampath, and Joseph C. Larsen
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Licensure ,Biodefense ,medicine.medical_specialty ,Health (social science) ,medicine.drug_class ,business.industry ,Highly pathogenic ,Public Health, Environmental and Occupational Health ,Disaster Planning ,General Medicine ,Management, Monitoring, Policy and Law ,Antiviral Agents ,Bioterrorism ,Drug development ,Virus Diseases ,medicine ,Animals ,Humans ,Immunotherapy ,Antiviral drug ,Intensive care medicine ,business ,Equine Encephalitis - Abstract
In recent years, there has been an increase in the perceived threat of biological agents being used against civilian populations. This has prompted an urgent need for the development and procurement of medical countermeasures (MCMs) against highly pathogenic viruses that can prevent morbidity and mortality from infections caused by these agents. To date, antiviral drug development has been largely focused on clinically prevalent chronic infections due to their commercial viability. This has left a huge gap in the drug development path for acute infections of biodefense importance. In this review, we discuss the antiviral research and development initiatives focusing specifically on poxviruses, filoviruses, and equine encephalitis viruses (EEV). We discuss the benefits and technical challenges in the current development strategies and the hurdles in the licensure path for MCMs against these highly pathogenic viruses under the FDA Animal Rule, and we provide recommendations for the path forward.
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- 2011
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6. Experimental demonstration of tethered gene drive systems for confined population modification or suppression
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Matthew Metzloff, Emily Yang, Sumit Dhole, Andrew G. Clark, Philipp W. Messer, and Jackson Champer
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Gene drive ,CRISPR ,Toxin-antidote confined ,Drosophila melanogaster ,Tethered gene drive ,Population modification ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background Homing gene drives hold great promise for the genetic control of natural populations. However, current homing systems are capable of spreading uncontrollably between populations connected by even marginal levels of migration. This could represent a substantial sociopolitical barrier to the testing or deployment of such drives and may generally be undesirable when the objective is only local population control, such as suppression of an invasive species outside of its native range. Tethered drive systems, in which a locally confined gene drive provides the CRISPR nuclease needed for a homing drive, could provide a solution to this problem, offering the power of a homing drive and confinement of the supporting drive. Results Here, we demonstrate the engineering of a tethered drive system in Drosophila, using a regionally confined CRISPR Toxin-Antidote Recessive Embryo (TARE) drive to support modification and suppression homing drives. Each drive was able to bias inheritance in its favor, and the TARE drive was shown to spread only when released above a threshold frequency in experimental cage populations. After the TARE drive had established in the population, it facilitated the spread of a subsequently released split homing modification drive (to all individuals in the cage) and of a homing suppression drive (to its equilibrium frequency). Conclusions Our results show that the tethered drive strategy is a viable and easily engineered option for providing confinement of homing drives to target populations.
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- 2022
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7. The conserved Xanthomonas campestris pv. vesicatoria effector protein XopX is a virulence factor and suppresses host defense in Nicotiana benthamiana
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Brian J. Staskawicz, Christina Morales, Bassem Al Sady, Douglas Dahlbeck, Matthew Metz, and Eszter T. Clark
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biology ,Effector ,fungi ,food and beverages ,Nicotiana benthamiana ,Virulence ,Xanthomonas campestris pv. Vesicatoria ,Cell Biology ,Plant Science ,biology.organism_classification ,Virology ,Plant disease ,Xanthomonas campestris ,Microbiology ,Type three secretion system ,Xanthomonas ,Genetics - Abstract
Nicotiana benthamiana leaves display a visible plant cell death response when infiltrated with a high titer inoculum of the non-host pathogen, Xanthomonas campestris pv. vesicatoria (Xcv). This visual phenotype was used to identify overlapping cosmid clones from a genomic cosmid library constructed from the Xcv strain, GM98-38. Individual cosmid clones from the Xcv library were conjugated into X. campestris pv. campestris (Xcc) and exconjugants were scored for an altered visual high titer inoculation response in N. benthamiana. The molecular characterization of the cosmid clones revealed that they contained a novel gene, xopX, that encodes a 74-kDa type III secretion system (TTSS) effector protein. Agrobacterium-mediated transient expression of XopX in N. benthamiana did not elicit the plant cell death response although detectable XopX protein was produced. Interestingly, the plant cell death response occurred when the xopX Agrobacterium-mediated transient expression construct was co-inoculated with strains of either XcvDeltaxopX or Xcc, both lacking xopX. The co-inoculation complementation of the plant cell death response also depends on whether the Xanthomonas strains contain an active TTSS. Transgenic 35S-xopX-expressing N. benthamiana plants also have the visible plant cell death response when inoculated with the non-xopX-expressing strains XcvDeltaxopX and Xcc. Unexpectedly, transgenic 35S-xopX N. benthamiana plants displayed enhanced susceptibility to bacterial growth of Xcc as well as other non-xopX-expressing Xanthomonas and Pseudomonas strains. This result is also consistent with the increase in bacterial growth on wild type N. benthamiana plants observed for Xcc when XopX is expressed in trans. Furthermore, XopX contributes to the virulence of Xcv on host pepper (Capsicum annuum) and tomato (Lycopersicum esculentum) plants. We propose that the XopX bacterial effector protein targets basic innate immunity in plants, resulting in enhanced plant disease susceptibility.
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- 2005
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8. Eight more ways to deal with antibiotic resistance
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David M. Shlaes and Matthew Metz
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Value (ethics) ,Quality Control ,media_common.quotation_subject ,Resistance (psychoanalysis) ,Antibiotic resistance ,Commentaries ,Medicine ,Animals ,Humans ,Pharmacology (medical) ,Quality (business) ,Animal Husbandry ,Letters to the Editor ,media_common ,Pharmacology ,Government ,Clinical Trials as Topic ,business.industry ,Information Dissemination ,Drug Resistance, Microbial ,Public relations ,Private sector ,United States ,Anti-Bacterial Agents ,United States Government Agencies ,Infectious Diseases ,Private Sector ,Stewardship ,business - Abstract
The fight against antibiotic resistance must be strengthened. We propose actions that U.S. government agencies and private sector entities can take to build a more comprehensive effort. These actions can increase the viability of investing in new antibiotics, ensure the quality and stewardship of all antibiotics, and make responses to emerging resistance more informed. Success requires the thoughtful exercise of federal authority and a firm commitment to share data and reward developers for the value generated with new, life-saving antibiotics.
- Published
- 2014
9. What Good Is Agricultural Biotechnology?
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Matthew Metz
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Food security ,Genetic drift ,business.industry ,Crop production ,Host (biology) ,Genetically modified crops ,Horticulture ,Agricultural biotechnology ,Biology ,business ,Agronomy and Crop Science ,Biotechnology - Abstract
The dialogue and debate over crops developed with genetic engineering (GE) has produced a host of questions. These questions merit consideration. Here a rational and optimistic reply is attempted.
- Published
- 2000
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10. Driving Spray Drying towards Better Yield: Tackling a Problem That Sticks Around
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Pavithra Sundararajan, Justin Moser, Lisa Williams, Tiffany Chiang, Colin Riordan, Matthew Metzger, Fan Zhang-Plasket, Fang Wang, John Collins, and Joseph Williams
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wall deposition ,glass transition temperature ,sorption kinetics ,process product and performance ,start-up and shutdown operation ,Pharmacy and materia medica ,RS1-441 - Abstract
Powder deposition and accumulation on walls of spray drying chamber has been known to impact spray drying processes, resulting in lower yield, frequent shutdowns, and downtimes. Critical factors that impact the extent and rate of wall deposition have been studied extensively in the chemical and food industry. In this paper, we present an atypical process yield issue wherein acceptable yield is obtained during the first batch of spray drying but undergoes significant yield loss in consecutive batches. Through understanding the interplay of the process, material properties, and equipment, we identify key mechanisms that are playing a role in causing the process yield issue. These mechanisms include surface roughness of the inner wall of the spray dryer, variation in gas flow due to the introduction of process analytical technology, start-up and shutdown operating parameters that expose the wall deposited powder from the prior batch to temperatures close to the onset of glass transition temperature and cause depression of its glass transition temperature. These factors result in more wall accumulation and impact the yield in subsequent batches. By correcting for most of these factors, the yield reduction issue was mitigated, and processing efficiency was improved.
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- 2023
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11. The incidence of stricture and ulcerative disease at the duodenoileostomy in stomach intestinal pylorus sparing surgery and its successful management
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Samuel Cottam, Mitchell Roslin, Daniel Cottam, Bleu Schniederjan, Matthew Metz, Austin Cottam, Bo Neichoy, Amit Surve, Paul Enochs, and Hinali Zaveri
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medicine.medical_specialty ,medicine.anatomical_structure ,Duodenoileostomy ,business.industry ,Stomach ,Incidence (epidemiology) ,General surgery ,medicine ,Surgery ,Disease ,Pylorus ,business - Published
- 2016
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12. State-of-the-art therapeutic medical countermeasures for bacterial threat agents
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Joseph C. Larsen, M. V. Stundick, Aruna Sampath, and Matthew Metz
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State (polity) ,business.industry ,media_common.quotation_subject ,Drug Discovery ,Medicine ,Medical emergency ,business ,Public health preparedness ,medicine.disease ,humanities ,media_common - Abstract
In recent years, there has been an increase in the perceived threat of biological agents being used against civilian populations. This has prompted an urgent need for the development and procuremen...
- Published
- 2011
- Full Text
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13. Fitness effects of CRISPR endonucleases in Drosophila melanogaster populations
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Anna M Langmüller, Jackson Champer, Sandra Lapinska, Lin Xie, Matthew Metzloff, Samuel E Champer, Jingxian Liu, Yineng Xu, Jie Du, Andrew G Clark, and Philipp W Messer
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gene drive ,fitness ,off-target effects ,CRISPR ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)/Cas9 provides a highly efficient and flexible genome editing technology with numerous potential applications ranging from gene therapy to population control. Some proposed applications involve the integration of CRISPR/Cas9 endonucleases into an organism’s genome, which raises questions about potentially harmful effects to the transgenic individuals. One example for which this is particularly relevant are CRISPR-based gene drives conceived for the genetic alteration of entire populations. The performance of such drives can strongly depend on fitness costs experienced by drive carriers, yet relatively little is known about the magnitude and causes of these costs. Here, we assess the fitness effects of genomic CRISPR/Cas9 expression in Drosophila melanogaster cage populations by tracking allele frequencies of four different transgenic constructs that allow us to disentangle ‘direct’ fitness costs due to the integration, expression, and target-site activity of Cas9, from fitness costs due to potential off-target cleavage. Using a maximum likelihood framework, we find that a model with no direct fitness costs but moderate costs due to off-target effects fits our cage data best. Consistent with this, we do not observe fitness costs for a construct with Cas9HF1, a high-fidelity version of Cas9. We further demonstrate that using Cas9HF1 instead of standard Cas9 in a homing drive achieves similar drive conversion efficiency. These results suggest that gene drives should be designed with high-fidelity endonucleases and may have implications for other applications that involve genomic integration of CRISPR endonucleases.
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- 2022
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14. The prevalence of carotid artery stenosis in patients undergoing aortic reconstruction
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Matthew Metz, Michael P. Lilly, Claudia C. Powell, Marshall E. Benjamin, Mitchell A. Cahan, Lois A. Killewich, Linda Kolodner, William R. Flinn, and Robert G. Sawyer
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Male ,medicine.medical_specialty ,Aortic Diseases ,Arterial Occlusive Diseases ,Coronary artery disease ,Aortic aneurysm ,Aneurysm ,medicine.artery ,Carotid artery disease ,Prevalence ,medicine ,Humans ,Carotid Stenosis ,Aged ,Retrospective Studies ,Ultrasonography, Doppler, Duplex ,Aorta ,business.industry ,Vascular disease ,General Medicine ,Middle Aged ,medicine.disease ,Aortic Aneurysm ,Surgery ,Stenosis ,cardiovascular system ,Female ,Internal carotid artery ,business ,Carotid Artery, Internal - Abstract
Background: Coronary artery disease occurs frequently in patients undergoing aortic reconstruction, and it has been presumed that internal carotid artery occlusive disease is also common. This has led to the practice of screening for and repairing significant carotid lesions in asymptomatic patients prior to aortic reconstruction. The purpose of this study was to determine the true prevalence of internal carotid artery disease in these patients. Methods: The records of 240 patients who underwent duplex ultrasound screening for carotid artery disease prior to aortic reconstruction were reviewed. Surgery was performed for aortic aneurysm (AA) or aorto-iliac occlusive disease (AO). The prevalence of hyperlipidemia and coronary artery disease was similar between the two groups, but tobacco use, hypertension, and diabetes mellitus differed. Results: Internal carotid artery stenosis ≥50% occurred in 26.7% of the total group (64 of 240 cases). Stenosis ≥50% was more common in the AO group (40 of 101 cases, 39.6%) than the AA group (24 of 139 cases, 17.3%, P = 0.0001). Severe disease (70% to 99%) was also more common in the AO group than the AA group (9.9% versus 3.6%, P = 0.0464). Conclusion: Internal carotid artery disease occurs commonly in patients undergoing aortic reconstruction, and screening is worthwhile. Significant disease is more common in patients with aorto-iliac occlusive disease than in those with aortic aneursym, although atherosclerotic risk factors occur with varying frequency in the two groups. These findings suggest that additional factors may contribute to the higher prevalence of internal carotid artery stenosis in aorto-iliac occlusive disease.
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- 1999
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15. Reply to 'Simple Solutions Reflect Misunderstanding of Animal Antibiotic Use'
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Matthew Metz and David M. Shlaes
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Pharmacology ,Infectious Diseases ,business.industry ,Management science ,Medicine ,Pharmacology (medical) ,Antibiotic use ,business ,Biotechnology ,Simple (philosophy) - Published
- 2015
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16. A homing suppression gene drive with multiplexed gRNAs maintains high drive conversion efficiency and avoids functional resistance alleles
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Emily Yang, Matthew Metzloff, Anna M Langmüller, Xuejiao Xu, Andrew G Clark, Philipp W Messer, and Jackson Champer
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Genetics ,QH426-470 - Abstract
AbstractGene drives are engineered alleles that can bias inheritance in their favor, allowing them to spread throughout a population. They could potentially be used to modify or suppress pest populations, such as mosquitoes that spread diseases. CRISPR/Cas9 homing drives, which copy themselves by homology-directed repair in drive/wild-type heterozygotes, are a powerful form of gene drive, but they are vulnerable to resistance alleles that preserve the function of their target gene. Such resistance alleles can prevent successful population suppression. Here, we constructed a homing suppression drive in Drosophila melanogaster
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- 2022
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17. The conserved Xanthomonas campestris pv. vesicatoria effector protein XopX is a virulence factor and suppresses host defense in Nicotiana benthamiana
- Author
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Matthew, Metz, Douglas, Dahlbeck, Christina Q, Morales, Bassem, Al Sady, Eszter T, Clark, and Brian J, Staskawicz
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Plant Leaves ,Bacterial Proteins ,Base Sequence ,Cell Death ,Virulence ,Molecular Sequence Data ,Tobacco ,Biological Transport, Active ,Membrane Transport Proteins ,Amino Acid Sequence ,Xanthomonas campestris ,Conserved Sequence ,Plant Diseases - Abstract
Nicotiana benthamiana leaves display a visible plant cell death response when infiltrated with a high titer inoculum of the non-host pathogen, Xanthomonas campestris pv. vesicatoria (Xcv). This visual phenotype was used to identify overlapping cosmid clones from a genomic cosmid library constructed from the Xcv strain, GM98-38. Individual cosmid clones from the Xcv library were conjugated into X. campestris pv. campestris (Xcc) and exconjugants were scored for an altered visual high titer inoculation response in N. benthamiana. The molecular characterization of the cosmid clones revealed that they contained a novel gene, xopX, that encodes a 74-kDa type III secretion system (TTSS) effector protein. Agrobacterium-mediated transient expression of XopX in N. benthamiana did not elicit the plant cell death response although detectable XopX protein was produced. Interestingly, the plant cell death response occurred when the xopX Agrobacterium-mediated transient expression construct was co-inoculated with strains of either XcvDeltaxopX or Xcc, both lacking xopX. The co-inoculation complementation of the plant cell death response also depends on whether the Xanthomonas strains contain an active TTSS. Transgenic 35S-xopX-expressing N. benthamiana plants also have the visible plant cell death response when inoculated with the non-xopX-expressing strains XcvDeltaxopX and Xcc. Unexpectedly, transgenic 35S-xopX N. benthamiana plants displayed enhanced susceptibility to bacterial growth of Xcc as well as other non-xopX-expressing Xanthomonas and Pseudomonas strains. This result is also consistent with the increase in bacterial growth on wild type N. benthamiana plants observed for Xcc when XopX is expressed in trans. Furthermore, XopX contributes to the virulence of Xcv on host pepper (Capsicum annuum) and tomato (Lycopersicum esculentum) plants. We propose that the XopX bacterial effector protein targets basic innate immunity in plants, resulting in enhanced plant disease susceptibility.
- Published
- 2005
18. Tree stand falls: a persistent cause of sports injury
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Marc E. Kross, Peter L. Abt, Leonidas G. Koniaris, Paul E. Bankey, and Matthew Metz
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Adult ,Male ,medicine.medical_specialty ,New York ,Poison control ,Occupational safety and health ,Trees ,Leisure Activities ,Injury prevention ,Medicine ,Humans ,Aged ,Maryland ,business.industry ,Incidence (epidemiology) ,Medical record ,Medical examiner ,Human factors and ergonomics ,General Medicine ,Middle Aged ,Surgery ,Emergency medicine ,Athletic Injuries ,Injury Severity Score ,Accidental Falls ,business - Abstract
OBJECTIVE: Tree stand falls are a well-known cause of hunting-related injury. Spine and brain injuries associated with these falls result in a significant incidence of permanent disability. Prior studies indicate that hunting tree stand injuries are largely preventable with the proper use of safety belts; however, compliance with safety belt use is variable. The purposes of this study were to determine 1) current compliance with safety belt use, 2) alterations in the spectrum of injury, and 3) causes of the falls. METHODS: From January 1996 to October 2001, 51 tree stand-related injuries referred to either of two regional trauma centers or their region's medical examiner's office were reviewed. Data had been recorded in each hospital's trauma registry, and the registries were searched for falls. Medical records were reviewed for additional data retrospectively, with an emphasis on determining the use of safety belts, and mechanisms contributing to the fall. RESULTS: Fifty-one cases of tree stand-associated injuries were identified. These injuries all occurred in men, with a mean age of 42.6 years (range, 22-69 years). Alcohol use was present in 10% of patients and in two of the three deaths. The mean Injury Severity Score was 18.1 (range, 2-75). The most common injuries were spinal fractures (51% of series) and extremity fractures (41% of series). Closed head injuries were identified in 24% and lung injuries were identified in 22% of patients. Abdominal visceral injuries were present in 8% and genitourinary injuries were present in 4%. Three patients died. In addition to injury from the fall, a significant number (six patients [12%]) had additional morbidity from exposure. Only two patients reported the use of a safety belt (4% of series). There were no cases of gunshot wounds in this review, either self-inflicted or hunter-related. The chief reasons reported for these falls were errors in placement that resulted in structural failure of the stand, or errors made while climbing into or out of the stand (50% of falls). CONCLUSION: Devastating spine and brain injuries continue to occur after falls from tree stands during recreational hunting when safety belts are not used. Our results suggest a continuing need for the education of hunters concerning safe tree stand hunting practices, including proper methods of stand placement, assessment of tree branch strength, avoidance of fatigue and alcohol, anticipation of firearm recoil, and proper methods of stand entrance and exit. Trauma prevention programs directed toward heightened public awareness of these injuries during hunting season are still needed.
- Published
- 2004
19. Purine synthesis and increased Agrobacterium tumefaciens transformation of yeast and plants
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Matthew Lockwood Mullaney, Dave E. Monks, Matthew Metz, Eugene W. Nester, Tyler Hall, and Radclyffe L. Roberts
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Genetics ,Multidisciplinary ,biology ,DNA, Plant ,Virulence ,Auxotrophy ,Mutant ,Saccharomyces cerevisiae ,Agrobacterium tumefaciens ,Biological Sciences ,biology.organism_classification ,Yeast ,Transformation (genetics) ,Transformation, Genetic ,Purines ,Transformation efficiency ,Genetic screen - Abstract
The bacterium Agrobacterium tumefaciens transforms eukaryotic hosts by transferring DNA to the recipient cell where it is integrated and expressed. Bacterial factors involved in this interkingdom gene transfer have been described, but less is known about host-cell factors. Using the yeast Saccharomyces cerevisiae as a model host, we devised a genetic screen to identify yeast mutants with altered transformation sensitivities. Twenty-four adenine auxotrophs were identified that exhibited supersensitivity to A. tumefaciens -mediated transformation when deprived of adenine. We extended these results to plants by showing that purine synthesis inhibitors cause supersensitivity to A. tumefaciens transformation in three plant species. The magnitude of this effect is large and does not depend on prior genetic manipulations of host cells. These data indicate the utility of yeast as a model for the transformation process and identify purine biosynthesis as a key determinant of transformation efficiency. These findings should increase the utility of A. tumefaciens in genetic engineering.
- Published
- 2003
20. Biodiversity (Communications arising): suspect evidence of transgenic contamination
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Matthew, Metz and Johannes, Fütterer
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Recombination, Genetic ,Polymorphism, Genetic ,Gene Transfer, Horizontal ,Nucleic Acid Hybridization ,Reproducibility of Results ,Plants, Genetically Modified ,Polymerase Chain Reaction ,Zea mays ,Transformation, Genetic ,Hybridization, Genetic ,Transgenes ,Artifacts ,Mexico ,Genome, Plant ,DNA Primers - Abstract
Quist and Chapela claim that transgenic DNA constructs have been introgressed into a traditional maize variety in Mexico, and furthermore suggest that these constructs have been reassorted and introduced into different genomic backgrounds. However, we show here that their evidence for such introgression is based on the artefactual results of a flawed assay; in addition, the authors misinterpret a key reference to explain their results, concluding that reassortment of integrated transgenic DNA occurs during transformation or recombination.
- Published
- 2002
21. Different requirements for EDS1 and NDR1 by disease resistance genes define at least two R gene-mediated signaling pathways in Arabidopsis
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Jane E. Parker, Michael J. Daniels, Nicole Aarts, Brian J. Staskawicz, Matthew Metz, and Eric B. Holub
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Oomycete ,Genetics ,Multidisciplinary ,biology ,Arabidopsis Proteins ,Arabidopsis ,Locus (genetics) ,R gene ,Plant disease resistance ,Biological Sciences ,biology.organism_classification ,Genes, Plant ,Phenotype ,Pseudomonas ,Mutation ,Hyaloperonospora parasitica ,Effector-triggered immunity ,Gene ,Alleles ,Plant Diseases ,Plant Proteins ,Signal Transduction ,Transcription Factors - Abstract
The Arabidopsis genes EDS1 and NDR1 were shown previously by mutational analysis to encode essential components of race-specific disease resistance. Here, we examined the relative requirements for EDS1 and NDR1 by a broad spectrum of Resistance ( R ) genes present in three Arabidopsis accessions (Columbia, Landsberg- erecta , and Wassilewskija). We show that there is a strong requirement for EDS1 by a subset of R loci ( RPP2 , RPP4 , RPP5 , RPP21 , and RPS4 ), conferring resistance to the biotrophic oomycete Peronospora parasitica , and to Pseudomonas bacteria expressing the avirulence gene avrRps4 . The requirement for NDR1 by these EDS1 -dependent R loci is either weak or not measurable. Conversely, three NDR1 -dependent R loci, RPS2 , RPM1 , and RPS5 , operate independently of EDS1 . Another RPP locus, RPP8 , exhibits no strong exclusive requirement for EDS1 or NDR1 in isolate-specific resistance to P. parasitica , although resistance is compromised weakly by eds1 . Similarly, resistance conditioned by two EDS1 -dependent RPP genes, RPP4 and RPP5 , is impaired partially by ndr1 , implicating a degree of pathway cross-talk. Our results provide compelling evidence for the preferential utilization of either signaling component by particular R genes and thus define at least two disease resistance pathways. The data also suggest that strong dependence on EDS1 or NDR1 is governed by R protein structural type rather than pathogen class.
- Published
- 1998
22. Conflicts around a study of Mexican crops
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Johannes Fütterer and Matthew Metz
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Multidisciplinary ,Agroforestry ,Biology - Published
- 2002
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23. Suspect evidence of transgenic contamination (see editorial footnote)
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Johannes Fütterer and Matthew Metz
- Subjects
Transformation (genetics) ,Multidisciplinary ,law ,Evolutionary biology ,Transgene ,Reassortment ,Biodiversity ,Introgression ,Biology ,Suspect ,Zea mays ,Polymerase chain reaction ,law.invention - Abstract
Quist and Chapela claim that transgenic DNA constructs have been introgressed into a traditional maize variety in Mexico, and furthermore suggest that these constructs have been reassorted and introduced into different genomic backgrounds. However, we show here that their evidence for such introgression is based on the artefactual results of a flawed assay; in addition, the authors misinterpret a key reference to explain their results, concluding that reassortment of integrated transgenic DNA occurs during transformation or recombination.
- Published
- 2002
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24. LuNER: Multiplexed SARS-CoV-2 detection in clinical swab and wastewater samples
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Elizabeth C. Stahl, Allan R. Gopez, Connor A. Tsuchida, Vinson B. Fan, Erica A. Moehle, Lea B. Witkowsky, Jennifer R. Hamilton, Enrique Lin-Shiao, Matthew McElroy, Shana L. McDevitt, Alison Ciling, C. Kimberly Tsui, Kathleen Pestal, Holly K. Gildea, Amanda Keller, Iman A. Sylvain, Clara Williams, Ariana Hirsh, Alexander J. Ehrenberg, Rose Kantor, Matthew Metzger, Kara L. Nelson, Fyodor D. Urnov, Bradley R. Ringeisen, Petros Giannikopoulos, Jennifer A. Doudna, and IGI Testing Consortium
- Subjects
Medicine ,Science - Abstract
Clinical and surveillance testing for the SARS-CoV-2 virus relies overwhelmingly on RT-qPCR-based diagnostics, yet several popular assays require 2–3 separate reactions or rely on detection of a single viral target, which adds significant time, cost, and risk of false-negative results. Furthermore, multiplexed RT-qPCR tests that detect at least two SARS-CoV-2 genes in a single reaction are typically not affordable for large scale clinical surveillance or adaptable to multiple PCR machines and plate layouts. We developed a RT-qPCR assay using the Luna Probe Universal One-Step RT-qPCR master mix with publicly available primers and probes to detect SARS-CoV-2 N gene, E gene, and human RNase P (LuNER) to address these shortcomings and meet the testing demands of a university campus and the local community. This cost-effective test is compatible with BioRad or Applied Biosystems qPCR machines, in 96 and 384-well formats, with or without sample pooling, and has a detection sensitivity suitable for both clinical reporting and wastewater surveillance efforts.
- Published
- 2021
25. Criticism preserves the vitality of science
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Matthew Metz
- Subjects
Quality Control ,Science ,Philosophy ,Politics ,Biomedical Engineering ,Bioengineering ,Vitality ,Applied Microbiology and Biotechnology ,United States ,Aesthetics ,Molecular Medicine ,Criticism ,Periodicals as Topic ,Biotechnology - Published
- 2002
- Full Text
- View/download PDF
26. Development and Use of a Residence Time Distribution (RTD) Model Control Strategy for a Continuous Manufacturing Drug Product Pharmaceutical Process
- Author
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Samantha Hurley, Anthony Tantuccio, Manuel Sebastian Escotet-Espinoza, Matthew Flamm, and Matthew Metzger
- Subjects
continuous manufacturing ,continuous direct compression ,residence time distribution ,control strategy ,Pharmacy and materia medica ,RS1-441 - Abstract
Residence-time-distribution (RTD)-based models are key to understanding the mixing dynamics of continuous manufacturing systems. Such models can allow for material traceability throughout the process and can provide the ability for removal of non-conforming material from the finished product. These models have been implemented in continuous pharmaceutical manufacturing mainly for monitoring purposes, not as an integral part of the control strategy and in-process specifications. This paper discusses the steps taken to develop an RTD model design space and how the model was statistically incorporated into the product’s control strategy. To develop the model, experiments were conducted at a range of blender impeller speeds and total system mass flow rates. RTD parameters were optimized for each condition tested using a tank-in-series-type model with a delay. Using the experimental RTD parameters, an equation was derived relating the mean residence time to the operating conditions (i.e., blender impeller speed and mass flow rate). The RTD parameters were used in combination with real-time upstream process data to predict downstream API concentration, where these predictions allowed validation across the entire operating range of the process by comparison to measured tablet assay. The standard in-process control limits for the product were statistically tightened using the validation acceptance criteria. Ultimately, this model and strategy were accepted by regulatory authorities.
- Published
- 2022
- Full Text
- View/download PDF
27. Microscale ecology regulates particulate organic matter turnover in model marine microbial communities
- Author
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Tim N. Enke, Gabriel E. Leventhal, Matthew Metzger, José T. Saavedra, and Otto X. Cordero
- Subjects
Science - Abstract
Particle-attached bacteria play a key ecosystem role by degrading complex organic materials in the ocean. Here, the authors use model marine microbial communities to show that community composition and interspecies interactions can significantly slowdown the rates of particle turnover in the environment.
- Published
- 2018
- Full Text
- View/download PDF
28. but Syngenta deal is a boon to Berkeley
- Author
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Matthew Metz
- Subjects
Engineering ,Multidisciplinary ,business.industry ,business - Published
- 2001
- Full Text
- View/download PDF
29. Sustainability of natural movement activity
- Author
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Matthew Metzgar
- Subjects
physical activity ,fitness ,environmental impact ,economic factors ,quality of life ,health ,Social sciences (General) ,H1-99 - Abstract
In recent years, there has been a focus on reducing energy consumption in commercial buildings as a means of increasing their sustainability. As part of this trend, various health clubs and fitness centers have been designed to lower consumption of resources such as electricity and water. However, energy consumption is just one part of sustainability, with human health and economic health also paramount. When all components of sustainability are analyzed, other forms of physical activity may possess higher levels of sustainability than traditional gym exercise. Natural movement activity consists of outdoor activity that replicates movements performed by ancient humans during the Paleolithic era. A full analysis of sustainability shows that natural movement activity consumes fewer resources and provides unique psychological and physical benefits compared with traditional indoor exercise.
- Published
- 2012
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