106 results on '"Matthew L. Cooper"'
Search Results
2. A long-acting interleukin-7, rhIL-7-hyFc, enhances CAR T cell expansion, persistence, and anti-tumor activity
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Miriam Y. Kim, Reyka Jayasinghe, Jessica M. Devenport, Julie K. Ritchey, Michael P. Rettig, Julie O’Neal, Karl W. Staser, Krista M. Kennerly, Alun J. Carter, Feng Gao, Byung Ha Lee, Matthew L. Cooper, and John F. DiPersio
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Science - Abstract
Chimeric antigen receptor T cells represent a breakthrough treatment in hematologic malignancies, but insufficient level of cytotoxicity and persistence of T cells might compromise success. Authors show here that a recombinant long acting form of interleukin-7 enhances proliferation, persistence and cytotoxicity of the engineered T cells, resulting in long term disease remission.
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- 2022
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3. Boosting and lassoing new prostate cancer SNP risk factors and their connection to selenium
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David E. Booth, Venugopal Gopalakrishna-Remani, Matthew L. Cooper, Fiona R. Green, and Margaret P. Rayman
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Medicine ,Science - Abstract
Abstract We begin by arguing that the often used algorithm for the discovery and use of disease risk factors, stepwise logistic regression, is unstable. We then argue that there are other algorithms available that are much more stable and reliable (e.g. the lasso and gradient boosting). We then propose a protocol for the discovery and use of risk factors using lasso or boosting variable selection. We then illustrate the use of the protocol with a set of prostate cancer data and show that it recovers known risk factors. Finally, we use the protocol to identify new and important SNP based risk factors for prostate cancer and further seek evidence for or against the hypothesis of an anticancer function for Selenium in prostate cancer. We find that the anticancer effect may depend on the SNP-SNP interaction and, in particular, which alleles are present.
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- 2021
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4. CD7-deleted hematopoietic stem cells can restore immunity after CAR T cell therapy
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Miriam Y. Kim, Matthew L. Cooper, Miriam T. Jacobs, Julie K. Ritchey, Julia Hollaway, Todd A. Fehniger, and John F. DiPersio
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Immunology ,Oncology ,Medicine - Abstract
Targeting T cell malignancies with universal CD7-targeting chimeric antigen receptor T cells (UCART7) can lead to profound immune deficiency due to loss of normal T and NK cells. While a small population of endogenous CD7– T cells exists, these cells are unlikely to be able to repopulate the entire immune repertoire after UCART7 treatment, as they are limited in number and proliferative capacity. To rescue T and NK cells after UCART7, we created hematopoietic stem cells genetically deleted for CD7 (CD7-KO HSCs). CD7-KO HSCs were able to engraft immunodeficient mice and differentiate into T and NK cells lacking CD7 expression. CD7-KO T and NK cells could perform effector functions as robustly as control T and NK cells. Furthermore, CD7-KO T cells were phenotypically and functionally distinct from endogenous CD7– T cells, indicating that CD7-KO T cells can supplement immune functions lacking in CD7– T cells. Mice engrafted with CD7-KO HSCs maintained T and NK cell numbers after UCART7 treatment, while these were significantly decreased in control mice. These studies support the development of CD7-KO HSCs to augment host immunity in patients with T cell malignancies after UCART7 treatment.
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- 2021
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5. Radionuclides transform chemotherapeutics into phototherapeutics for precise treatment of disseminated cancer
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Nalinikanth Kotagiri, Matthew L. Cooper, Michael Rettig, Christopher Egbulefu, Julie Prior, Grace Cui, Partha Karmakar, Mingzhou Zhou, Xiaoxia Yang, Gail Sudlow, Lynne Marsala, Chantiya Chanswangphuwana, Lan Lu, LeMoyne Habimana-Griffin, Monica Shokeen, Xinming Xu, Katherine Weilbaecher, Michael Tomasson, Gregory Lanza, John F. DiPersio, and Samuel Achilefu
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Science - Abstract
Most of the systemic cancer therapies lack spatiotemporal control. Here, the authors show targeted activation of a light-sensitive drug by radiopharmaceuticals in disseminated cancer cells as potential in vivo treatment of metastatic diseases with reduced off-target toxicity.
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- 2018
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6. Effect of Epigallocatechin-3-Gallate on Graft-Versus-Host Disease
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Jaebok Choi Ph.D., Matthew L. Cooper, Edward D. Ziga, Julie Ritchey, and John F. Dipersio M.D., Ph.D.
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Medicine - Abstract
Allogeneic hematopoietic stem cell transplantation (allo-HSCT) is often complicated by alloreactive donor T-cell-mediated graft-versus-host disease (GvHD). The major polyphenol of green tea, epigallocatechin-3-gallate (EGCG), is an inhibitor of both DNA methyltransferase 1 (DNMT1) and signal transducer and activator of transcription 1 (STAT1), which are essential for induction of GvHD. Thus, in this report, we examine if in vivo administration of EGCG mitigates GvHD in several different animal models. While we concede that refinement of EGCG treatment might result in GvHD prevention, our results suggest that EGCG treatment might not be an effective therapy against GvHD in the clinic.
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- 2014
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7. S100A9 upregulated by IFNGR signaling blockade functions as a novel GVHD suppressor without compromising GVL in mice
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Sena Kim, Sora Lim, Boram Kim, Julie Ritchey, Kiran Vij, Julie Prior, Lynne Marsala, Alyssa Stoner, Feng Gao, Samuel Achilefu, Matthew L. Cooper, John F. DiPersio, and Jaebok Choi
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Immunology ,Cell Biology ,Hematology ,Biochemistry - Abstract
Allogeneic hematopoietic stem cell transplantation (allo-HSCT) is a curative treatment for both malignant and nonmalignant hematologic disorders. However, graft-versus-host disease (GVHD) and malignant relapse limit its therapeutic success. We previously demonstrated that the blockade of interferon-gamma receptor (IFNGR) signaling in donor T cells resulted in a reduction in GVHD while preserving graft-versus-leukemia (GVL) effects. However, the underlying molecular mechanisms remain inconclusive. In this study, we found that S100A9 is a novel GVHD suppressor upregulated when IFNGR is blocked in T cells. Both Ifngr1−/− and S100a9-overexpressing T cells significantly reduced GVHD without compromising GVL, altering donor T-cell trafficking to GVHD target organs in our mouse model of allo-HSCT. In addition, in vivo administration of recombinant murine S100A9 proteins prolongs the overall survival of recipient mice. Furthermore, in vivo administration of anti-human IFNGRα neutralizing antibody (αhGR-Nab) significantly upregulates the expression of S100A9 in human T cells and improved GVHD in our mouse model of xenogeneic human peripheral blood mononuclear cell transplantation. Consistent with S100a9-overexpressing T cells in our allo-HSCT model, αhGR-Nab reduced human T-cell trafficking to the GVHD target organs. Taken together, S100A9, a downstream molecule suppressed by IFNGR signaling, functions as a novel GVHD suppressor without compromising GVL.
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- 2023
8. Discovery of a novel genomic alteration that renders leukemic cells resistant to CD19-targeted immunotherapies
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Armin Ghobadi, Jack H. Landmann, Alun Carter, Matthew L. Cooper, Mehmet Emrah Selli, Jufang Chang, Matthew Baker, Christopher A. Miller, Francesca Ferraro, David Y. Chen, Amanda M. Smith, Taylor A. LaValle, Eric J. Duncavage, Justin Chou, Victor Tam, Joseph M. Benoun, Jenny Nater, Nathalie Scholler, Francesca Milletti, Remus Vezan, Adrian Bot, John M. Rossi, and Nathan Singh
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Antigens, CD19 ,Immunotherapy ,Genomics ,Hematology - Published
- 2022
9. Supplementary Figures from Multidimensional Analyses of Donor Memory-Like NK Cells Reveal New Associations with Response after Adoptive Immunotherapy for Leukemia
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Todd A. Fehniger, John DiPersio, Mark A. Schroeder, Keith E. Stockerl-Goldstein, Iskra Pusic, Meagan A. Jacoby, Peter Westervelt, Geoffrey L. Uy, Camille N. Abboud, Rizwan Romee, Feng Gao, Sridhar Nonavinkere Srivatsan, Natalia Jaeger, Matthew L. Cooper, Jennifer A. Foltz, Michelle Becker-Hapak, Ethan McClain, Sweta Desai, Timothy Schappe, Mark Foster, Julia A. Wagner, Pamela Wong, Carly C. Neal, Celia C. Cubitt, Amanda F. Cashen, and Melissa M. Berrien-Elliott
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Supplemental figures S1-S11
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- 2023
10. Supplementary Methods from Multidimensional Analyses of Donor Memory-Like NK Cells Reveal New Associations with Response after Adoptive Immunotherapy for Leukemia
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Todd A. Fehniger, John DiPersio, Mark A. Schroeder, Keith E. Stockerl-Goldstein, Iskra Pusic, Meagan A. Jacoby, Peter Westervelt, Geoffrey L. Uy, Camille N. Abboud, Rizwan Romee, Feng Gao, Sridhar Nonavinkere Srivatsan, Natalia Jaeger, Matthew L. Cooper, Jennifer A. Foltz, Michelle Becker-Hapak, Ethan McClain, Sweta Desai, Timothy Schappe, Mark Foster, Julia A. Wagner, Pamela Wong, Carly C. Neal, Celia C. Cubitt, Amanda F. Cashen, and Melissa M. Berrien-Elliott
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Supplementary patient data, supplementary materials and methods
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- 2023
11. Supplementary Tables from Multidimensional Analyses of Donor Memory-Like NK Cells Reveal New Associations with Response after Adoptive Immunotherapy for Leukemia
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Todd A. Fehniger, John DiPersio, Mark A. Schroeder, Keith E. Stockerl-Goldstein, Iskra Pusic, Meagan A. Jacoby, Peter Westervelt, Geoffrey L. Uy, Camille N. Abboud, Rizwan Romee, Feng Gao, Sridhar Nonavinkere Srivatsan, Natalia Jaeger, Matthew L. Cooper, Jennifer A. Foltz, Michelle Becker-Hapak, Ethan McClain, Sweta Desai, Timothy Schappe, Mark Foster, Julia A. Wagner, Pamela Wong, Carly C. Neal, Celia C. Cubitt, Amanda F. Cashen, and Melissa M. Berrien-Elliott
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Supplemental patient tables (1-3) and mass cytometry reagent table (4)
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- 2023
12. Supplementary Table 1 from Interaction between Single Nucleotide Polymorphisms in Selenoprotein P and Mitochondrial Superoxide Dismutase Determines Prostate Cancer Risk
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Margaret P. Rayman, Fiona R. Green, Fredrik Wiklund, Henrik Grönberg, Hans-Olov Adami, and Matthew L. Cooper
- Abstract
Supplementary Table 1 from Interaction between Single Nucleotide Polymorphisms in Selenoprotein P and Mitochondrial Superoxide Dismutase Determines Prostate Cancer Risk
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- 2023
13. ACR Appropriateness Criteria® Osteomyelitis or Septic Arthritis-Child (Excluding Axial Skeleton)
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Narendra S. Shet, Ramesh S. Iyer, Sherwin S. Chan, Keith Baldwin, Tushar Chandra, Jimmy Chen, Matthew L. Cooper, C. Buddy Creech, Anne E. Gill, Terry L. Levin, Michael M. Moore, Helen R. Nadel, Mohsen Saidinejad, Gary R. Schooler, Judy H. Squires, David W. Swenson, and Cynthia K. Rigsby
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Radiology, Nuclear Medicine and imaging - Published
- 2022
14. ACR Appropriateness Criteria® Crohn Disease-Child
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Michael M. Moore, Michael S. Gee, Ramesh S. Iyer, Sherwin S. Chan, Travis D. Ayers, Dianna M.E. Bardo, Tushar Chandra, Matthew L. Cooper, Jennifer L. Dotson, Samir K. Gadepalli, Anne E. Gill, Terry L. Levin, Helen R. Nadel, Gary R. Schooler, Narendra S. Shet, Judy H. Squires, Andrew T. Trout, Jessica J. Wall, and Cynthia K. Rigsby
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Radiology, Nuclear Medicine and imaging - Published
- 2022
15. Multi-modality imaging characteristics of costochondral fractures, a highly specific rib fracture for child abuse
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Monica M. Forbes-Amrhein, Annie J. Gensel, Matthew L. Cooper, and Boaz Karmazyn
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Pediatrics, Perinatology and Child Health ,Radiology, Nuclear Medicine and imaging - Published
- 2022
16. Clustering geo-tagged photo collections using dynamic programming.
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Matthew L. Cooper
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- 2011
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17. Abstract 6418: xWU-NK-101 as salvage therapy post immune checkpoint blockade (ICB)
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Tom A. Leedom, Barbara Muz, Jaykumar Vadakekolathu, John J. Muth, Xiao-Hua Li, Gregory Watson, Kristaan Magee, Ryan P. Sullivan, Melissa Berrien-Elliott, Todd Fenigher, Sergio Rutella, Matthew L. Cooper, Ayman Kabakibi, and Jan K. Davidson-Moncada
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Cancer Research ,Oncology - Abstract
ICB therapy has transformed cancer treatment; durable responses in difficult-to-treat cancers have been observed. Despite this most patients (pts) don’t respond to ICB (primary resistance), and many pts who initially respond eventually relapse (acquired resistance). Primary resistance is associated with tumor cell extrinsic factors, e.g., the immunosuppressive nature of the tumor microenvironment (TME), while acquired resistance is associated with tumor intrinsic factors, e.g., downregulation of MHC1, preventing T cell recognition. Treatments to overcome ICB resistance are necessary. WU-NK-101 is a PBMC-derived, cytokine-reprogrammed, expanded, and cryopreserved off-the-shelf memory NK cell product. WU-NK-101 cells capture the memory-like NK cell biology of cytokine-induced memory-like (CIML) NK cells, exhibiting enhanced cytotoxicity, metabolic fitness/flexibility, and resistance to TME immunosuppression (Muth et al. EHA 2022; Rutella et al. ESMO 2022). Bone marrow biopsies, collected from R/R AML pts who received CIML-NK cells (NCT01898793), were interrogated using immune gene expression (GE) profiling and spatially resolved proteomics (IO360® panel, n = 740 genes, and GeoMx® DSP; NanoString Technologies). Higher T-cell infiltration was noted post CIML-NK. CIBERSORT deconvoluted GE data inferred higher abundance of macrophages, γδT cells and activated dendritic cells on day 28 post-treatment. GE signatures showed downregulation of NFIL3 and FAM30A (log2 fold-change Citation Format: Tom A. Leedom, Barbara Muz, Jaykumar Vadakekolathu, John J. Muth, Xiao-Hua Li, Gregory Watson, Kristaan Magee, Ryan P. Sullivan, Melissa Berrien-Elliott, Todd Fenigher, Sergio Rutella, Matthew L. Cooper, Ayman Kabakibi, Jan K. Davidson-Moncada. xWU-NK-101 as salvage therapy post immune checkpoint blockade (ICB) [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2023; Part 1 (Regular and Invited Abstracts); 2023 Apr 14-19; Orlando, FL. Philadelphia (PA): AACR; Cancer Res 2023;83(7_Suppl):Abstract nr 6418.
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- 2023
18. Media segmentation using self-similarity decomposition.
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Jonathan Foote and Matthew L. Cooper
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- 2003
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19. Multidimensional Analyses of Donor Memory-Like NK Cells Reveal New Associations with Response after Adoptive Immunotherapy for Leukemia
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Amanda F. Cashen, Matthew L. Cooper, Carly Neal, Camille N. Abboud, Feng Gao, Sweta Desai, Melissa M. Berrien-Elliott, Michelle Becker-Hapak, Celia C. Cubitt, Timothy Schappe, Pamela Wong, Mark A. Schroeder, John F. DiPersio, Peter Westervelt, Julia A. Wagner, Jennifer A. Foltz, Meagan A. Jacoby, Natalia Jaeger, Iskra Pusic, Mark P. Foster, Geoffrey L. Uy, Todd A. Fehniger, Ethan McClain, Rizwan Romee, Keith Stockerl-Goldstein, and Sridhar Nonavinkere Srivatsan
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0301 basic medicine ,business.industry ,medicine.medical_treatment ,Myeloid leukemia ,Cancer ,Immunotherapy ,medicine.disease ,Immunotherapy, Adoptive ,Phenotype ,Article ,Killer Cells, Natural ,Cell therapy ,Leukemia, Myeloid, Acute ,03 medical and health sciences ,Leukemia ,030104 developmental biology ,0302 clinical medicine ,Oncology ,In vivo ,030220 oncology & carcinogenesis ,Cancer research ,Humans ,Medicine ,Mass cytometry ,business - Abstract
Natural killer (NK) cells are an emerging cancer cellular therapy and potent mediators of antitumor immunity. Cytokine-induced memory-like (ML) NK cellular therapy is safe and induces remissions in patients with acute myeloid leukemia (AML). However, the dynamic changes in phenotype that occur after NK-cell transfer that affect patient outcomes remain unclear. Here, we report comprehensive multidimensional correlates from ML NK cell–treated patients with AML using mass cytometry. These data identify a unique in vivo differentiated ML NK–cell phenotype distinct from conventional NK cells. Moreover, the inhibitory receptor NKG2A is a dominant, transcriptionally induced checkpoint important for ML, but not conventional NK-cell responses to cancer. The frequency of CD8α+ donor NK cells is negatively associated with AML patient outcomes after ML NK therapy. Thus, elucidating the multidimensional dynamics of donor ML NK cells in vivo revealed critical factors important for clinical response, and new avenues to enhance NK-cell therapeutics. Significance: Mass cytometry reveals an in vivo memory-like NK-cell phenotype, where NKG2A is a dominant checkpoint, and CD8α is associated with treatment failure after ML NK–cell therapy. These findings identify multiple avenues for optimizing ML NK–cell immunotherapy for cancer and define mechanisms important for ML NK–cell function. This article is highlighted in the In This Issue feature, p. 1775
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- 2020
20. Putative Predictors of Response to WU-NK-101, an Allogeneic, Enhanced Memory (ML) Natural Killer (NK) Cell Therapy Product, for Relapsed/Refractory (R/R) Acute Myeloid Leukemia (AML)
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Sergio Rutella, Amanda F. Cashen, John Muth, Mary Elizabeth Mathyer, Alun James Carter, Brunda Tumala, Laura Arthur, Kristann Magee, Paula Comune Pennacchi, Julian Gorrochategui, Vincent Petit, Daniel Primo, Dominique Blanchard, Michael Kiebish, Nupur Bhatnagar, David Boocock, Jayakumar Vadakekolathu, Matthew L Cooper, Melissa M. Berrien-Elliott, Jan K Davidson-Moncada, and Todd A. Fehniger
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Immunology ,Cell Biology ,Hematology ,Biochemistry - Published
- 2022
21. The Dual PI3Kdg Inhibitor Duvelisib Potently Inhibits Cytokine Release Syndrome (CRS) While Maintaining CAR-T Function
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Parmeshwar N. Amatya, Reyka G. Jayasinghe, Alun J. Carter, Matthew L. Cooper, Jonathan A. Pachter, John F. DiPersio, and Julie K. Ritchey
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Immunology ,Cell Biology ,Hematology ,Biochemistry - Published
- 2022
22. Chest CT in the evaluation of child abuse - When is it useful?
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Boaz Karmazyn, Megan B. Marine, Matthew R. Wanner, Matthew L. Cooper, Lisa R. Delaney, S. Gregory Jennings, George J. Eckert, and Roberta A. Hibbard
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Radiography ,Psychiatry and Mental health ,Rib Fractures ,Pediatrics, Perinatology and Child Health ,Developmental and Educational Psychology ,Humans ,Infant ,Female ,Child Abuse ,Child ,Tomography, X-Ray Computed ,Retrospective Studies - Abstract
Indications for chest CT in evaluation of child abuse are unknown.Determine which groups of children can best benefit from chest CT.10-year (1/2010 to 12/2019) retrospective study of children3 years who had chest CT within 3 days of the initial skeletal survey.Demographic and clinical information were obtained from medical records. Two pediatric radiologists reviewed, independently and blinded to clinical information, anonymized rib X-rays (initial and follow up when available) and chest CT. Disagreements were resolved by a third pediatric radiologist. Agreement was evaluated using kappa statistics. Number and percentage of fractures were analyzed by negative binomial models and chi-square tests, respectively.50 children (21 females) with average age of 9.7 months, 27 of whom had follow-up radiography. Agreement on initial and follow-up X-rays was substantial (k = 0.72) and perfect (k = 1.00), respectively, and almost perfect (k = 0.82) for CT scans. Chest CT demonstrated more fractures than X-ray, both initially (112 vs. 42, p 0.0001) and at follow-up (93 vs. 49, p 0.0001). Significantly more additional fractures were found at CT (11/13, 84.6 %) in patients with positive than in those with negative initial surveys (7/37, 18.9 %, p 0.001). Ten initial surveys had only indeterminate fractures; four of them had fractures and six had no fractures on CT. Chest CT missed one patient (1/27, 3.7 %) with acute nondisplaced anterior rib fractures.Chest CT can be considered in children with negative skeletal survey and high clinical suspicion for child abuse, and when the diagnosis of rib fractures is indeterminate.
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- 2022
23. CAR-modified memory-like NK cells exhibit potent responses to NK-resistant lymphomas
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Timothy Schappe, Pamela Wong, Marco L. Davila, Neha Mehta-Shah, Amanda F. Cashen, Wei Meng, John F. DiPersio, Matthew L. Cooper, Brad S. Kahl, Maximilian Schaettler, Jennifer Tran, Melissa M. Berrien-Elliott, Feng Gao, Lynne Marsala, Carly Neal, Nancy D. Marin, Miriam Y. Kim, Margery Gang, Nancy L. Bartlett, Todd A. Fehniger, and Mark P. Foster
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Cytotoxicity, Immunologic ,Lymphoma ,Immunobiology and Immunotherapy ,medicine.medical_treatment ,Immunology ,Cell ,Biology ,Immunotherapy, Adoptive ,Biochemistry ,Mice ,medicine ,Animals ,Humans ,Receptor ,Cytotoxicity ,Receptors, Chimeric Antigen ,Degranulation ,Cell Biology ,Hematology ,Immunotherapy ,medicine.disease ,Xenograft Model Antitumor Assays ,Chimeric antigen receptor ,Killer Cells, Natural ,Leukemia ,medicine.anatomical_structure ,Cancer research - Abstract
Natural killer (NK) cells are a promising cellular immunotherapy for cancer. Cytokine-induced memory-like (ML) NK cells differentiate after activation with interleukin-12 (IL-12), IL-15, and IL-18, exhibit potent antitumor responses, and safely induce complete remissions in patients with leukemia. However, many cancers are not fully recognized via NK cell receptors. Chimeric antigen receptors (CARs) have been used to enhance tumor-specific recognition by effector lymphocytes. We hypothesized that ML differentiation and CAR engineering would result in complementary improvements in NK cell responses against NK-resistant cancers. To test this idea, peripheral blood ML NK cells were modified to express an anti-CD19 CAR (19-CAR-ML), which displayed significantly increased interferon γ production, degranulation, and specific killing against NK-resistant lymphoma lines and primary targets compared with nonspecific control CAR-ML NK cells or conventional CAR NK cells. The 19-CAR and ML responses were synergistic and CAR specific and required immunoreceptor tyrosine-based activation motif signaling. Furthermore, 19-CAR-ML NK cells generated from lymphoma patients exhibited improved responses against their autologous lymphomas. 19-CAR-ML NK cells controlled lymphoma burden in vivo and improved survival in human xenograft models. Thus, CAR engineering of ML NK cells enhanced responses against resistant cancers and warrants further investigation, with the potential to broaden ML NK cell recognition against a variety of NK cell–resistant tumors.
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- 2020
24. Off-the-Shelf CAR-T
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Matthew L. Cooper, Giorgio Ottaviano, John F. DiPersio, and Waseem Qasim
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- 2022
25. Antibody-drug conjugates plus Janus kinase inhibitors enable MHC-mismatched allogeneic hematopoietic stem cell transplantation
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Stephen P. Persaud, Sena Kim, Peter G. Ruminski, Michael P. Rettig, Julie Ritchey, Matthew L. Cooper, John F. DiPersio, Jaebok Choi, and Sora Lim
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Immunoconjugates ,Myeloid ,medicine.medical_treatment ,Graft vs Host Disease ,Graft vs Leukemia Effect ,Hematopoietic stem cell transplantation ,Major histocompatibility complex ,Donor lymphocyte infusion ,Mice ,hemic and lymphatic diseases ,medicine ,Animals ,Janus Kinase Inhibitors ,Interleukin-15 ,Mice, Knockout ,Mice, Inbred BALB C ,Sulfonamides ,biology ,Janus kinase 1 ,business.industry ,Hematopoietic Stem Cell Transplantation ,Janus Kinase 1 ,General Medicine ,Immunotherapy ,Janus Kinase 2 ,Allografts ,Transplantation ,Disease Models, Animal ,surgical procedures, operative ,medicine.anatomical_structure ,Purines ,biology.protein ,Cancer research ,Azetidines ,Pyrazoles ,Janus kinase ,business ,Research Article ,Signal Transduction - Abstract
Despite the curative potential of hematopoietic stem cell transplantation (HSCT), conditioning-associated toxicities preclude broader clinical application. Antibody-drug conjugates (ADCs) provide an attractive approach to HSCT conditioning that minimizes toxicity while retaining efficacy. Initial studies of ADC conditioning have largely focused on syngeneic HSCT. However, to treat acute leukemias or induce tolerance for solid organ transplantation, this approach must be expanded to allogeneic HSCT (allo-HSCT). Using murine allo-HSCT models, we show that pharmacologic Janus kinase 1/2 (JAK1/2) inhibition combined with CD45- or cKit-targeted ADCs enables robust multilineage alloengraftment. Strikingly, myeloid lineage donor chimerism exceeding 99% was achievable in fully MHC-mismatched HSCT using this approach. Mechanistic studies using the JAK1/2 inhibitor baricitinib revealed marked impairment of T and NK cell survival, proliferation, and effector function. NK cells were exquisitely sensitive to JAK1/2 inhibition due to interference with IL-15 signaling. Unlike irradiated mice, ADC-conditioned mice did not develop pathogenic graft-versus-host alloreactivity when challenged with mismatched T cells. Finally, the combination of ADCs and baricitinib balanced graft-versus-host disease and graft-versus-leukemia responses in delayed donor lymphocyte infusion models. Our allo-HSCT conditioning strategy exemplifies the promise of immunotherapy to improve the safety of HSCT for treating hematologic diseases.
- Published
- 2021
26. CS1 CAR-T targeting the distal domain of CS1 (SLAMF7) shows efficacy in high tumor burden myeloma model despite fratricide of CD8+CS1 expressing CAR-T cells
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Julie O’Neal, Julie K. Ritchey, Matthew L. Cooper, Jessica Niswonger, L. Sofía González, Emily Street, Michael P. Rettig, Susan W. Gladney, Leah Gehrs, Ramzi Abboud, Julie L. Prior, Gabriel J. Haas, Reyka G. Jayasinghe, Li Ding, Armin Ghobadi, Ravi Vij, and John F. DiPersio
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Cancer Research ,Receptors, Chimeric Antigen ,T-Lymphocytes ,Hematology ,CD8-Positive T-Lymphocytes ,Immunotherapy, Adoptive ,Xenograft Model Antitumor Assays ,Tumor Burden ,Mice ,Oncology ,Signaling Lymphocytic Activation Molecule Family ,Animals ,Humans ,Multiple Myeloma - Abstract
Despite improvement in treatment options for myeloma patients, including targeted immunotherapies, multiple myeloma remains a mostly incurable malignancy. High CS1 (SLAMF7) expression on myeloma cells and limited expression on normal cells makes it a promising target for CAR-T therapy. The CS1 protein has two extracellular domains – the distal Variable (V) domain and the proximal Constant 2 (C2) domain. We generated and tested CS1-CAR-T targeting the V domain of CS1 (Luc90-CS1-CAR-T) and demonstrated anti-myeloma killing in vitro and in vivo using two mouse models. Since fratricide of CD8 + cells occurred during production, we generated fratricide resistant CS1 deficient Luc90- CS1- CAR-T (ΔCS1-Luc90- CS1- CAR-T). This led to protection of CD8 + cells in the CAR-T cultures, but had no impact on efficacy. Our data demonstrate targeting the distal V domain of CS1 could be an effective CAR-T treatment for myeloma patients and deletion of CS1 in clinical production did not provide an added benefit using in vivo immunodeficient NSG preclinical models.
- Published
- 2021
27. Baricitinib prevents GvHD by increasing Tregs via JAK3 and treats established GvHD by promoting intestinal tissue repair via EGFR
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Feng Gao, Matthew A. Ciorba, Matthew L. Cooper, Kidist Ashami, Sora Lim, Kiran Vij, Jaebok Choi, Sena Kim, Sarah Peterson, John F. DiPersio, Julie Ritchey, Srikanth Santhanam, and Karl Staser
- Subjects
Cancer Research ,Sulfonamides ,business.industry ,Baricitinib ,Graft vs Host Disease ,Janus Kinase 3 ,Hematology ,Tissue repair ,T-Lymphocytes, Regulatory ,Article ,ErbB Receptors ,Intestines ,Mice ,Oncology ,Purines ,Cancer research ,Medicine ,Animals ,Azetidines ,Pyrazoles ,business - Published
- 2021
28. Multi-modality imaging characteristics of costochondral fractures, a highly specific rib fracture for child abuse
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Monica M, Forbes-Amrhein, Annie J, Gensel, Matthew L, Cooper, and Boaz, Karmazyn
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Radiography ,Rib Fractures ,Child, Preschool ,Infant, Newborn ,Humans ,Infant ,Child Abuse ,Child ,Multimodal Imaging ,Retrospective Studies - Abstract
Rib fractures in young children are strongly associated with nonaccidental trauma (NAT). Costochondral junction (CCJ) fractures are unique with most being identified in the healing phase on radiographs. NAT-associated CCJ fractures, therefore, may be underdiagnosed. Improved diagnoses of CCJ fractures may lead to better identification of NAT.To document the association of CCJ fractures with NAT, and improve CCJ fracture recognition by documenting the imaging features with multiple radiologic modalities.Children, ages 0-4 years, with CCJ fractures on radiologic reports were identified over a 10-year period. All available radiographic skeletal surveys, chest radiographs, computed tomography (CT), magnetic resonance imaging (MRI) and ultrasound (US) studies were reviewed. We chose CT as the radiologic gold standard. Imaging patterns of the primary fracture and healing changes were documented. The diagnosis of NAT by the child protective team was documented.One hundred and nine CCJ fractures were found in 22 patients, 21 of whom were diagnosed with NAT (95.5%). Radiographic skeletal survey identified 34.6% of CCJ fractures (P 0.0001) with a sensitivity of 32.5% and specificity of 99.2%. MRI identified 50.0% of CCJ fractures with a sensitivity of 42.9% and specificity of 98.1%.CCJ fractures are highly specific for NAT. As sensitivity is low for radiographic skeletal survey in CCJ fracture diagnosis compared with CT, CT may have a role in confirming a clinical suspicion of NAT.
- Published
- 2021
29. Immunotherapy for T-Cell ALL and T-Cell NHL
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John F. DiPersio, Matthew L. Cooper, and Karl Staser
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Cancer Research ,business.industry ,Lymphoma, Non-Hodgkin ,T cell ,medicine.medical_treatment ,T-cell ALL ,Hematology ,Immunotherapy ,Precursor T-Cell Lymphoblastic Leukemia-Lymphoma ,medicine.anatomical_structure ,Oncology ,medicine ,Cancer research ,Humans ,business - Published
- 2020
30. Boosting and lassoing new prostate cancer SNP risk factors and their connection to selenium
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Margaret P. Rayman, Venugopal Gopalakrishna-Remani, David E. Booth, Fiona R. Green, and Matthew L. Cooper
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Male ,Boosting (machine learning) ,Computer science ,Science ,Feature selection ,Antineoplastic Agents ,Computational biology ,Article ,Prostate cancer ,Selenium ,Lasso (statistics) ,medicine ,Genetics ,SNP ,Humans ,Alleles ,Cancer ,Multidisciplinary ,Prostatic Neoplasms ,Stepwise regression ,medicine.disease ,Logistic Models ,Oncology ,Risk factors ,Disease risk ,Medicine ,Gradient boosting ,Algorithms ,Biomarkers - Abstract
We begin by arguing that the often used algorithm for the discovery and use of disease risk factors, stepwise logistic regression, is unstable. We then argue that there are other algorithms available that are much more stable and reliable (e.g. the lasso and gradient boosting). We then propose a protocol for the discovery and use of risk factors using lasso or boosting variable selection. We then illustrate the use of the protocol with a set of prostate cancer data and show that it recovers known risk factors. Finally, we use the protocol to identify new and important SNP based risk factors for prostate cancer and further seek evidence for or against the hypothesis of an anticancer function for Selenium in prostate cancer. We find that the anticancer effect may depend on the SNP-SNP interaction and, in particular, which alleles are present.
- Published
- 2020
31. Prospective evaluation of World Health Organization guidelines for diagnosis of pneumonia in children presenting to an emergency department in a resource-limited setting
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Suraj Rijal, Sunil Adhikari, Corinne M. Hohl, Matthew L. Cooper, and Darlene R. House
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Male ,World Health Organization ,World health ,Prospective evaluation ,03 medical and health sciences ,0302 clinical medicine ,030225 pediatrics ,Medicine ,Humans ,030212 general & internal medicine ,Prospective Studies ,business.industry ,Infant ,Emergency department ,Pneumonia ,medicine.disease ,Cross-Sectional Studies ,Low and middle income countries ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Practice Guidelines as Topic ,Health Resources ,Female ,Medical emergency ,business ,Emergency Service, Hospital ,Limited resources - Abstract
Clinicians in resource-limited settings commonly use the World Health Organization criteria to diagnose pneumonia in children.The aim of this study was to prospectively evaluate the diagnostic accuracy of the WHO criteria compared with chest radiograph for the diagnosis of pneumonia in children under 5 years of age presenting to an emergency department (ED) in Nepal.A prospective cross-sectional study of children presenting to an ED with respiratory complaints in Nepal was conducted. It included all children under 5 years of age with cough or difficulty breathing who received a chest radiograph. Paediatric pneumonia was diagnosed according to WHO criteria when a child presented with a cough or difficulty breathing and met the age-related WHO-defined respiratory rate for tachypnoea. The criterion standard was radiographic pneumonia. The primary outcome was the sensitivity and specificity of the WHO criteria for diagnosis of pneumonia.Of 324 patients enrolled, 72 had radiographic pneumonia. The median (IQR) age was 17 (23) months. Overall, WHO criteria had a sensitivity of 71% (95% CI 59-81) and specificity of 57% (95% CI 50-63). Respiratory rate had poor diagnostic accuracy for pneumonia with an area under the curve of 0.65.The WHO criteria had poor sensitivity and specificity for the diagnosis of pneumonia in children presenting to the ED in a resource-limited setting.
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- 2020
32. Selective Targeting of α4β1 Integrin Attenuates Murine Graft versus Host Disease
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Bader Alahmari, Jaebok Choi, Matthew L. Cooper, Feng Gao, Kiran Vij, Julie Ritchey, John F. DiPersio, and Peter G. Ruminski
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Cancer Research ,business.industry ,T-Lymphocytes ,H-2 Antigens ,Hematopoietic Stem Cell Transplantation ,Graft vs Host Disease ,Hematology ,Biology ,Integrin alpha4beta1 ,medicine.disease ,Article ,Disease Models, Animal ,Mice ,Text mining ,Graft-versus-host disease ,Oncology ,medicine ,Cancer research ,Animals ,Transplantation, Homologous ,Disease Susceptibility ,Molecular Targeted Therapy ,α4β1 integrin ,business ,Biomarkers - Published
- 2020
33. Baricitinib-induced blockade of interferon gamma receptor and interleukin-6 receptor for the prevention and treatment of graft-versus-host disease
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John F. DiPersio, Jessica Niswonger, Julie Ritchey, Bader Alahmari, Matthew L. Cooper, Samuel Achilefu, Karl Staser, Kiran Vij, Lynne Marsala, Kidist Ashami, Ikuo Tsunoda, Jaebok Choi, Bing Wang, and Mark A. Schroeder
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Male ,0301 basic medicine ,Cancer Research ,medicine.medical_treatment ,Graft vs Host Disease ,Hematopoietic stem cell transplantation ,CXCR3 ,T-Lymphocytes, Regulatory ,B7-H1 Antigen ,Mice ,0302 clinical medicine ,immune system diseases ,Medicine ,Cells, Cultured ,Receptors, Interferon ,Sulfonamides ,biology ,Hematopoietic Stem Cell Transplantation ,Hematology ,3. Good health ,surgical procedures, operative ,Oncology ,Interleukin-6 receptor ,B7-1 Antigen ,Signal Transduction ,Antigen-Presenting Cells ,chemical and pharmacologic phenomena ,Major histocompatibility complex ,Article ,03 medical and health sciences ,Interferon-gamma receptor ,Animals ,Transplantation, Homologous ,Cell Proliferation ,business.industry ,Janus Kinase 1 ,medicine.disease ,Receptors, Interleukin-6 ,Transplantation ,030104 developmental biology ,Graft-versus-host disease ,Purines ,Cancer research ,biology.protein ,Azetidines ,Pyrazoles ,B7-2 Antigen ,business ,CD80 ,030215 immunology - Abstract
The therapeutic benefits of allogeneic hematopoietic stem cell transplantation (allo-HSCT) are derived from the graft-versus-leukemia (GvL) effects of the procedure. There is a strong association between the GvL effects and graft-versus-host disease (GvHD), a major life-threatening complication of allo-HSCT. The limiting of GvHD while maintaining the GvL effect remains the goal of allo-HSCT. Therefore, identifying optimal therapeutic targets to selectively suppress GvHD while maintaining the GvL effects represents a significant unmet medical need. We demonstrate that the dual inhibition of interferon gamma receptor (IFNγR) and interleukin-6 receptor (IL6R) results in near-complete elimination of GvHD in a fully major histocompatibility complex–mismatched allo-HSCT model. Furthermore, baricitinib (an inhibitor of Janus kinases 1 and 2 [JAK1/JAK2] downstream of IFNγR/IL6R) completely prevented GvHD; expanded regulatory T cells by preserving JAK3-STAT5 signaling; downregulated CXCR3 and helper T cells 1 and 2 while preserving allogeneic antigen-presenting cell–stimulated T cell proliferation; and suppressed the expression of major histocompatibility complex II (I-Ad), CD80/86, and PD-L1 on host antigen-presenting cells. Baricitinib also reversed established GvHD with 100% survival, thus demonstrating both preventive and therapeutic roles for this compound. Remarkably, baricitinib enhanced the GvL effects, possibly by downregulating tumor PD-L1 expression.
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- 2018
34. Radionuclides transform chemotherapeutics into phototherapeutics for precise treatment of disseminated cancer
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Gail Sudlow, Grace Cui, Partha Karmakar, Samuel Achilefu, Nalinikanth Kotagiri, John F. DiPersio, Le Moyne Habimana-Griffin, Julie L. Prior, Xinming Xu, Michael H. Tomasson, Matthew L. Cooper, Xiaoxia Yang, Lan Lu, Christopher Egbulefu, Mingzhou Zhou, Gregory M. Lanza, Katherine N. Weilbaecher, Monica Shokeen, Chantiya Chanswangphuwana, Michael P. Rettig, and Lynne Marsala
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Science ,General Physics and Astronomy ,Serum Albumin, Human ,Mice, SCID ,02 engineering and technology ,Integrin alpha4beta1 ,Article ,General Biochemistry, Genetics and Molecular Biology ,Cell Line ,03 medical and health sciences ,0302 clinical medicine ,Organometallic Compounds ,medicine ,Animals ,Neoplasm ,Disseminated disease ,Molecular Targeted Therapy ,lcsh:Science ,Micelles ,Multiple myeloma ,Multidisciplinary ,business.industry ,Mammary Neoplasms, Experimental ,Cancer ,General Chemistry ,021001 nanoscience & nanotechnology ,medicine.disease ,Xenograft Model Antitumor Assays ,Metastatic breast cancer ,Rats ,3. Good health ,Mice, Inbred C57BL ,medicine.anatomical_structure ,Photochemotherapy ,Drug Resistance, Neoplasm ,030220 oncology & carcinogenesis ,Cancer cell ,Cancer research ,Nanoparticles ,Female ,lcsh:Q ,Bone marrow ,Radiopharmaceuticals ,Stem cell ,Multiple Myeloma ,0210 nano-technology ,business - Abstract
Most cancer patients succumb to disseminated disease because conventional systemic therapies lack spatiotemporal control of their toxic effects in vivo, particularly in a complicated milieu such as bone marrow where progenitor stem cells reside. Here, we demonstrate the treatment of disseminated cancer by photoactivatable drugs using radiopharmaceuticals. An orthogonal-targeting strategy and a contact-facilitated nanomicelle technology enabled highly selective delivery and co-localization of titanocene and radiolabelled fluorodeoxyglucose in disseminated multiple myeloma cells. Selective ablation of the cancer cells was achieved without significant off-target toxicity to the resident stem cells. Genomic, proteomic and multimodal imaging analyses revealed that the downregulation of CD49d, one of the dimeric protein targets of the nanomicelles, caused therapy resistance in small clusters of cancer cells. Similar treatment of a highly metastatic breast cancer model using human serum albumin-titanocene formulation significantly inhibited cancer growth. This strategy expands the use of phototherapy for treating previously inaccessible metastatic disease., Most of the systemic cancer therapies lack spatiotemporal control. Here, the authors show targeted activation of a light-sensitive drug by radiopharmaceuticals in disseminated cancer cells as potential in vivo treatment of metastatic diseases with reduced off-target toxicity.
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- 2018
35. Genetic Deletion of CD7 in Hematopoietic Stem Cells to Restore Immunity after CAR T Cell Therapy for T Cell Malignancies
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Miriam Y. Kim, Julie Ritchey, Matthew L. Cooper, Julia Hollaway, and John F. DiPersio
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Transplantation ,T cell ,Cell Biology ,Hematology ,Biology ,Haematopoiesis ,medicine.anatomical_structure ,Immunity ,medicine ,Cancer research ,Molecular Medicine ,Immunology and Allergy ,CAR T-cell therapy ,Stem cell - Published
- 2021
36. A Phase 1/2 Dose-Escalation and Dose-Expansion Study of the Safety and Efficacy of Anti-CD7 Allogeneic CAR-T Cells (WU-CART-007) in Patients with Relapsed or Refractory T-Cell Acute Lymphoblastic Leukemia (T-ALL)/ Lymphoblastic Lymphoma (LBL)
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Ayman Kabakibi, Matthew L. Cooper, Tom Leedom, Armin Ghobadi, Ibrahim Aldoss, Alexander S. Hamil, Deepa Bhojwani, Jan K Davidson-Moncada, Eileen McNulty, Frederick L. Locke, Preeta Dasgupta, Karen Gheesling Mullis, Ryan J. Mattison, Kenneth M Chrobak, Shannon L. Maude, and John F. DiPersio
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Cart ,business.industry ,T cell ,Lymphoblastic Leukemia ,Immunology ,Lymphoblastic lymphoma ,Cell Biology ,Hematology ,medicine.disease ,Biochemistry ,medicine.anatomical_structure ,Refractory ,Cancer research ,Dose escalation ,Medicine ,In patient ,Car t cells ,business - Abstract
Background T-ALL/LBL represent a class of devastating hematologic cancers with high rates of relapse and mortality in both children and adults. Despite intensive multi-agent chemotherapy regimens, fewer than 50% of adults and 85% of children with T-ALL survive beyond five years. For those who relapse after initial therapy, salvage regimens induce remissions in only ~20-30% of cases, and survival is dismal. T-ALL/LBL is a genetically diverse group, but with universal overexpression of CD7, making this a suitable target for immunotherapy. Despite the success of CAR-T cells in B-cell malignancies, CAR-T cell development in T-cell malignancies has proven challenging due to fratricide and high risk of contamination of the genetically modified CAR-T product with the patient's malignant T cells. WU-CART-007 is a CD7-directed, genetically modified, allogeneic, 'off the shelf', fratricide-resistant chimeric antigen receptor (CAR) T-cell product for the treatment of CD7+ve hematologic malignancies. Methods This multicenter, open-label, dose-escalation, Phase 1/2 study (NCT#04984356) of WU-CART-007 in patients ≥ 12 years old, with relapsed or refractory T-ALL/LBL is designed to characterize the safety, tolerability, dose-limiting toxicities (DLTs), and maximum tolerated dose (MTD)/maximum administered dose (MAD; if no MTD defined) (Phase 1), and to investigate the preliminary anti-tumor activity, as measured by objective response rate (ORR) and duration of response (DOR) (Phase 2). Phase 1 is comprised of a dose escalation segment and will proceed according to a standard 3+3 design testing up to 4 dose levels from 1 to 9 x 10 8 cells. Adolescent patients, ages 12-17, will be eligible for enrollment in Phase 1 Dose Escalation beginning at Dose level 3 and 4, and during Phase 2 Cohort Expansion. Upon reaching the MTD and/or RP2D, the Phase 2 portion comprised of the cohort expansion segment will be launched. A Simon's optimal two-stage design will be implemented to enroll patients (an interim analysis for futility in the first stage and the final analysis in the second stage) for Phase 2 dose expansion cohort to confirm safety and explore preliminary efficacy. All patients will receive a single infusion of WU-CART-007 cells on day 1 following a lymphodepleting conditioning therapy consisting of fludarabine and cyclophosphamide on days -5 to -3. Patients will be hospitalized for a minimum of 7 days following WU-CART-007 administration. Response will be assessed on Cycle 1 Day 28 (± 1 days), and at Months 3, 6, 12, and 24, by bone marrow aspirate and biopsy and PET/CT if indicated. Response will be defined as per modified NCCN Guidelines Version 2.2020. Disclosures Ghobadi: Atara: Consultancy; Amgen: Consultancy, Research Funding; Wugen: Consultancy; Celgene: Consultancy; Kite, a Gilead Company: Consultancy, Honoraria, Research Funding. Locke: Janssen: Consultancy, Other: Scientific Advisory Role; Kite, a Gilead Company: Consultancy, Other: Scientific Advisory Role, Research Funding; Iovance Biotherapeutics: Consultancy, Other: Scientific Advisory Role; Legend Biotech: Consultancy, Other; Novartis: Consultancy, Other, Research Funding; Takeda: Consultancy, Other; Wugen: Consultancy, Other; Cowen: Consultancy; Umoja: Consultancy, Other; Bluebird Bio: Consultancy, Other: Scientific Advisory Role; Calibr: Consultancy, Other: Scientific Advisory Role; BMS/Celgene: Consultancy, Other: Scientific Advisory Role; GammaDelta Therapeutics: Consultancy, Other: Scientific Advisory Role; Cellular Biomedicine Group: Consultancy, Other: Scientific Advisory Role; Amgen: Consultancy, Other: Scientific Advisory Role; Allogene Therapeutics: Consultancy, Other: Scientific Advisory Role, Research Funding; EcoR1: Consultancy; Emerging Therapy Solutions: Consultancy; Gerson Lehrman Group: Consultancy; Moffitt Cancer Center: Patents & Royalties: field of cellular immunotherapy. Maude: Wugen: Consultancy; Novartis Pharmaceuticals Corporation: Consultancy, Research Funding. Davidson-Moncada: Wugen: Current Employment. Cooper: Wugen: Current Employment, Current holder of individual stocks in a privately-held company, Current holder of stock options in a privately-held company, Patents & Royalties; NeoImmune Tech: Patents & Royalties; RiverVest: Consultancy.
- Published
- 2021
37. Characterization of WU-CART-007, an Allogeneic CD7-Targeted CAR-T Cell Therapy for T-Cell Malignancies
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Pooja Vinay, Rachel Langland, Jennifer Govero, Nitin Mahajan, Anna Ballard, Andrew Martens, Liz Schwarzkopf, Tom Leedom, David H. Spencer, Somayeh Pouyanfard, Andrew Espenschied, Alexander S. Hamil, Kenneth M Chrobak, Matthew L. Cooper, Ayman Kabakibi, and Michael R. James
- Subjects
Cart ,medicine.anatomical_structure ,business.industry ,hemic and lymphatic diseases ,T cell ,Immunology ,Cancer research ,Medicine ,CAR T-cell therapy ,Cell Biology ,Hematology ,business ,Biochemistry - Abstract
Background T-cell Acute Lymphoblastic Leukemia (T-ALL) / Lymphoblastic Lymphoma (LBL) represent a class of devastating hematologic cancers with high rates of relapse and mortality in both children and adults. Development of CAR-T cell therapies for T-cell cancers has been complicated by induction of fratricide and the high risk of malignant cell contamination of the drug product in the autologous setting. Previously, Cooper et. al., demonstrated that CRISPR/Cas9 gene-editing to delete CD7 prevented self-killing, and deletion of the T-cell receptor alpha constant (TRAC) enabled the use of healthy donor-derived T-cells to manufacture CD7-targeted CAR-T cells without risk of malignancy and mitigating the risk of GvHD. Here we present preclinical data supporting the safety and efficacy of WU-CART-007, an IND ready, off-the-shelf, and fratricide resistant CD7-targeted CAR-T cell for the treatment of CD7+ T-cell malignancies. Methods WU-CART-007 was manufactured using T cells isolated from healthy donors by deletion of CD7 and TRAC, followed by CAR transduction, cell expansion, depletion of residual TCRa/b+ cells and cryopreservation. Donors were confirmed negative for a panel of adventitious viruses. CD7/TRAC deletion and CAR transduction were confirmed by flow cytometry. Off-target editing profile was assessed by GUIDE-Seq. The binding kinetics to human CD7 were conducted by bio-layer interferometry and CD7 selectivity was confirmed by cell microarray with a library of HEK-293 cells expressing approximately 6000 human proteins. The in vitro activity of WU-CART-007 was interrogated by co-culture with human CD7+ CCRF-CEM T-ALL cells and the potential on-target, off-tumor activity was assessed by co-culture with a panel of immune and non-immune primary human cells. In vivo anti-tumor functionality was confirmed in immunocompromised NSG mice after the establishment of low or high tumor burden CCRF-CEM xenografts engineered to express green fluorescent protein (GFP) and click beetle red (CBR) luciferase. The impact of WU-CART-007 on normal hematopoiesis was assessed using CD34+ humanized NCG mice. Results Several successful full-scale manufacturing runs were completed with consistently high dual CD7/TRAC deletion, transduction efficiency, and cell viability. Drug product was primarily composed of a T cell memory phenotype. Off- target nuclease analysis by GUIDE-seq and targeted NGS confirmed no evidence of off-target editing events. The WU-CART-007 scFv exhibited high affinity and exquisite specificity for human CD7. In vitro co-incubation experiments confirmed strong cytotoxicity against CD7-expressing cells including CCRF-CEM T-ALL cells, primary T and NK cells, but not CD7- cells such as myeloid cells, B cells, hepatocytes, astrocytes, cardiomyocytes, epithelial cells, and endothelial cells. Importantly, no cytotoxicity was observed against hematopoietic progenitor cells in human bone marrow or cord blood following co-incubation with WU-CART-007. Similarly, WU-CART-007 treatment of a non-tumor bearing humanized mouse model resulted in transient reductions in CD7+ cells (T-cells and NK cells) but not CD7- cells (myeloid and B cells), and the impacted cells recovered after circulating WU-CART-007 cells were no longer detectable. Assessment of in vivo anti-tumor efficacy revealed that WU-CART-007 effectively inhibited tumor progression (>99% TGI) in both low and high burden CCRF-CEM tumor models and improved survival in a dose-dependent manner, while CAR- cells were inactive, confirming CD7-dependent activity. Conclusions These preclinical studies support the use of WU-CART-007 in clinical trials and highlight the potential of WU-CART-007 to be a well-tolerated and active therapy for patients with CD7+ T-cell malignancies. A first in human Phase 1/2 trial in patients with R/R T-ALL/LBL is currently open for enrollment (NCT# 04984356). Disclosures No relevant conflicts of interest to declare.
- Published
- 2021
38. 188 Development of WU-NK-101, a feeder cell-free expanded allogeneic memory NK cell product with potent anti-tumor activity
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Ayman Kabakibi, Niraj Shrestha, Alex Vessoni, Todd A. Fehniger, Michelle Becker-Hapak, Corey Johnson, Ethan McClain, Ken Chrobak, Mark P. Foster, Michael J. Dee, Malik Darwech, Ryan J. Sullivan, Alexander S. Hamil, Jennifer Govero, John Dean, You Zhou, Tom Leedom, Brunda Tumala, Carly Neal, Andrew Martens, Hing C. Wong, Melissa Berrien-Elliot, Mary Mathyer, and Matthew L. Cooper
- Subjects
Pharmacology ,Cancer Research ,medicine.medical_treatment ,T cell ,Immunology ,Cell ,Biology ,Cytokine ,medicine.anatomical_structure ,Oncology ,Cancer immunotherapy ,Cell culture ,medicine ,Cancer research ,Molecular Medicine ,Immunology and Allergy ,Cytokine secretion ,IL-2 receptor ,K562 cells - Abstract
BackgroundAllogeneic Natural Killer (NK) cells are emerging as a safe and effective modality for the treatment of cancer, overcoming several limitations associated with adoptive T cell therapies. Cytokine induced memory-NK cells offer several advantages over conventional NK cells, including enhanced functional persistence, efficacy, and metabolic fitness. Additionally, unlike iPSC and cord blood derived NK cells, they do not require engineering to enable functionality. Here we describe the use of WU-PRIME, a GMP-grade fusion protein complex to generate memory NK cells, and WU-EXPAND, a feeder cell free expansion system to expand memory-NK cells and create WU-NK-101. Further cryopreservation enables the large-scale, off-the-shelf manufacture of memory NK for cancer immunotherapy, with high anti-tumor activity.MethodsNK cells derived from healthy donor leukopheresate were either activated with WU-PRIME and then expanded with WU-EXPAND to form WU-NK-101 or immediately expanded with WU- EXPAND as controls and then cryopreserved. We compared NK cell expansion as well as post- thaw NK cell functionality as assessed by cytokine secretion and short-term and long-term anti- tumor functionality, long-term persistence in NSG mice, as well as anti-tumor activity in vivo.ResultsNK cells activated with WU-PRIME followed by WU-EXPAND (WU-NK-101), expand robustly in large-scale reactions, over 250-fold in 14 days. The cells maintain durable expression of CD25 after expansion, as well as several other hallmarks of the memory-NK phenotype as assessed by mass cytometry. As compared to cells expanded with WU-EXPAND only, WU-NK-101 cells have improved in vitro activity against K562 cells, as well as AML cell lines (TF-1, THP-1, and HL-60). Notably, this functionality is maintained long-term upon repeated challenge. In vivo, WU-NK-101 cells, compared to expanded NK cells have improved in vivo persistence (figure 1; 50,290 v. 9,623, pAbstract 188 Figure 1NK cell persistence in tumor-bearing mice. 10e6 cryopreserved NK cells were injected into K562 tumor-bearing mice, and supported with 50,000IU human IL-2 every other day. After 9 days, blood was harvested by cheek bleed and assessed for NK cells (hCD45+, CD56+, CD3) in the blood by flow cytometry.ConclusionsThe data demonstrate that WU-NK-101 generated using a feeder cell-free expansion system has a memory phenotype and improved in vitro and in vivo anti-tumor activity compared to conventional NK cells. This activation and expansion platform will enable the development and clinical translation of multiple allogeneic NK cell therapies.
- Published
- 2021
39. Multimedia information retrieval at FX Palo Alto Laboratory.
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Matthew L. Cooper, John Adcock, Andreas Girgensohn, Jeremy Pickens, and Lynn Wilcox
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- 2011
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40. Azacitidine Mitigates Graft-versus-Host Disease via Differential Effects on the Proliferation of T Effectors and Natural Regulatory T Cells In Vivo
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Darja Karpova, Mark A. Schroeder, John F. DiPersio, Matthew L. Cooper, Kiran Vij, Jaebok Choi, and Julie Ritchey
- Subjects
Cyclin-Dependent Kinase Inhibitor p21 ,0301 basic medicine ,medicine.medical_treatment ,CD3 ,Immunology ,Azacitidine ,Graft vs Host Disease ,Graft vs Leukemia Effect ,chemical and pharmacologic phenomena ,Hematopoietic stem cell transplantation ,Biology ,T-Lymphocytes, Regulatory ,Article ,Mice ,03 medical and health sciences ,Postoperative Complications ,0302 clinical medicine ,In vivo ,medicine ,Animals ,Humans ,Immunology and Allergy ,IL-2 receptor ,Cells, Cultured ,Cell Proliferation ,Mice, Knockout ,Hematopoietic Stem Cell Transplantation ,Interleukin-2 Receptor alpha Subunit ,FOXP3 ,Forkhead Transcription Factors ,T-Lymphocytes, Helper-Inducer ,Cell cycle ,medicine.disease ,Growth Inhibitors ,Mice, Mutant Strains ,Up-Regulation ,Mice, Inbred C57BL ,surgical procedures, operative ,030104 developmental biology ,Graft-versus-host disease ,Hematologic Neoplasms ,030220 oncology & carcinogenesis ,biology.protein ,medicine.drug - Abstract
Azacitidine (AzaC) mitigates graft-versus-host disease (GvHD) in both murine preclinical transplant models and in human clinical trials while maintaining a robust graft-versus-leukemia effect. Previous studies have failed to investigate the role of natural regulatory T cells (nTregs) on the mitigation of GvHD by AzaC, instead focusing on the generation of suppressive Tregs (CD4+CD25+FOXP3+) through the in vivo conversion of alloreactive donor T effectors (Teffs; CD4+CD25−FOXP3−) and the direct antiproliferative effects of AzaC on allogeneic T cells. Using B6.Foxp3DTR/GFP mice in which Tregs can be specifically ablated through administration of diphtheria toxin, we demonstrate that natural Tregs are required in the donor graft for AzaC to optimally protect against GvHD and that nTregs, unlike Teffs (CD3+FOXP3−), are resistant to the antiproliferative effects of AzaC. Gene expression analysis identified the potent cell cycle inhibitor, p21, was significantly upregulated in Teffs but not nTregs after treatment with AzaC. Furthermore, we demonstrate that Teffs deficient in p21 are less sensitive to the antiproliferative effects of AzaC. These results demonstrate that nTregs are essential for AzaC to fully protect against GvHD and have important clinical implications for future clinical trials testing AzaC as a novel method of GvHD prophylaxis in man.
- Published
- 2017
41. Diagnosis of pediatric colonic volvulus with abdominal radiography: how good are we?
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Matthew L. Cooper, Lisa R. Delaney, Megan B. Marine, Frederick J. Rescorla, Samuel G. Jennings, and Boaz Karmazyn
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Adult ,Male ,Radiography, Abdominal ,medicine.medical_specialty ,Adolescent ,Colon ,Radiography ,030230 surgery ,Gastroenterology ,Colonic Diseases ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,030225 pediatrics ,Internal medicine ,parasitic diseases ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Young adult ,Child ,Retrospective Studies ,Neuroradiology ,Colonic volvulus ,business.industry ,Reproducibility of Results ,Retrospective cohort study ,Abdominal distension ,digestive system diseases ,medicine.anatomical_structure ,Pediatrics, Perinatology and Child Health ,Abdomen ,Female ,Radiology ,medicine.symptom ,Presentation (obstetrics) ,business ,Intestinal Volvulus - Abstract
Colonic volvulus is rare in children and associated with colonic dysmotility. Diagnosis of colonic volvulus on radiographs in these patients can be challenging. The purpose of the study was to identify the accuracy of abdominal radiographs and findings suggestive of colonic volvulus. A retrospective (2003- 2014) study of all children with colonic volvulus proven surgically or endoscopically reviewed their medical charts for underlying disease and clinical presentation as well as their original radiograph reports. Two pediatric radiologists (reader 1 and reader 2) independently reviewed the radiographs. The kappa test was used to evaluate interobserver variability. There were 19 cases of colonic volvulus in 18 patients (11 males) a mean age 14 years. Cecal volvulus was the most common finding at 14/19 cases (74%). Sixteen of 18 (89%) patients had neurological impairment and 10 of 18 (56%) had intestinal dysmotility. The most common presentation was abdominal distension (14/19 [74%]) and pain (11/19 [58%]). Colonic volvulus was diagnosed in only 7/16 (44%) of the abdominal radiographs. The specific finding of a coffee-bean sign was retrospectively observed only by reader 2 in two cases. Absence of rectal gas and focal colonic loop dilation were the most common findings by the readers (average 73.5% and 87%, respectively) with Kappa values of 0.3 and 0.38, respectively. Diagnosis of colonic volvulus in children can be challenging. Radiologists should be alerted to the possibility of colonic volvulus when there is focal colonic loop distention or absent rectal gas.
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- 2017
42. The Dual PI3Kδγ Inhibitor Duvelisib Potently Inhibits IL-6 Production and Cytokine Release Syndrome (CRS) While Maintaining CAR-T Function in Vitro and In Vivo
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Matthew L. Cooper, Jonathan A. Pachter, John F. DiPersio, Alun Carter, Parmeshwar Amatya, Jessica Niswonger, and Julie Ritchey
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biology ,business.industry ,medicine.medical_treatment ,Immunology ,Cell Biology ,Hematology ,Pharmacology ,medicine.disease ,Biochemistry ,Duvelisib ,CD19 ,chemistry.chemical_compound ,Cytokine release syndrome ,Cytokine ,chemistry ,In vivo ,Humanized mouse ,biology.protein ,Medicine ,Tumor necrosis factor alpha ,business ,Interleukin 6 - Abstract
Despite remarkable clinical efficacy, CAR-T therapy has been limited by life-threatening toxicities in over 30% of patients (Maude, NEJM 2014 and Davila, SciTransMed 2014). Toxicities primarily manifest as Cytokine Release Syndrome (CRS) characterized by an early phase with fever, hypotension, and elevations of cytokines including IFNγ, GM-CSF, TNF, IL-10, and IL-6. Using a protein kinase inhibitor library containing 644 independent compounds, we aimed to identify compounds that could block CRS-related cytokine production without inhibiting CAR-T function. We identified, duvelisib (kindly provided by Verastem Oncology, Needham, MA), a novel and selective dual PI3K-δ,γ inhibitor as a potent inhibitor of CRS in vitro and in vivo without attenuating CAR-T function. Duvelisib (Copiktra) is approved for the treatment of relapsed/refractory CLL after 2 prior therapies and follicular lymphoma after 2 prior systemic therapies; the latter gained accelerated approval status based on overall response rate and continued approval may be contingent on confirmatory trials. To assess the ability of duvelisib to inhibit CAR-T mediated CRS, we performed an in vitro CRS assay (Singh, Cytotherapy, 2017). CART19 (19-28BBζ, 25,000 cells), Ramos (CD19+, 50,000 cells), and immature dendritic cells (iDC, 2,500 cells) were co-cultured in a 96 well plate for 48hrs in the presence of varying concentrations of duvelisib (0.3nM-1000nM). Secreted IL-6, a surrogate marker of CRS, was determined using a human IL-6 ELISA (R&D Systems). Duvelisib reduced IL-6 levels in a dose-dependent manner with 30nM duvelisib reducing IL-6 secretion more than 10-fold (Fig 1a). To confirm that duvelisib did not inhibit CAR-T function, we performed in vitro killing assays, in which CAR-T efficacy was determined using BLI imaging of luciferase labeled CD19+ Ramos targets. At clinically relevant therapeutic doses (C max of 200 to 500nM) of duvelisib, there was no effect on CAR-T function in vitro. Treatment with 10nM duvelisib resulted in a statistically insignificant ~20% reduction of CART19 efficacy (p>0.05) (Fig 1b). Of interest, although selective inhibitors of either or PI3Kδ (GSK2292767) or PI3Kγ (IPI549) had modest effects on blocking CAR-T induced IL-6 production in this in vitro model, the effect of combining both inhibitors had a more dramatic effect similar to the dual PI3K-δ,γ inhibitor, duvelisib. Next we assessed the ability of duvelisib to block IL-6 secretion in vivo using a fully immunocompetent murine model of CRS. Six-week old BALB/c mice were injected with the mitogenic anti-CD3ε antibody, 145-2C11 (10 µg/mouse). Duvelisib (450µg/mouse) was administered daily intraperitoneally (I.P), with the first dose of duvelisib injected 24 hours prior to injection of 145-2C11. Plasma IL-6 levels were determined using a mouse IL-6 ELISA (R&D Systems). Injection of 145-2C11 acutely elevated plasma IL-6 >32 fold relative to non-treated controls (4hrs; Control 34.4 pg/mL versus vs. 145-2C11 1088±99.6 pg/mL). Duvelisib significantly reduced mean plasma IL-6 >54% at 4hrs (Vehicle 1088±99.6 pg/ml vs duvelisib 492±99.6 pg/ml, p≤ 0.01) and >78% at 24hrs (Vehicle 220±101 pg/ml vs. duvelisib 49.3±16.1, p≤ 0.01) (Fig 1c) consistent with the effect of duvelisib in our in vitro CAR-T-induced CRS model described above. These studies demonstrate that duvelisib can inhibit CAR-T induced IL-6 production from iDC while having no inhibitory effect on CAR-T. Experiments are currently in progress to further characterize PI3K-δ,γ inhibition in humanized mouse models of CRS and CAR-T efficacy. Our preclinical data suggest that dual PI3K-δ,γ inhibition with duvelisib may represent an attractive alternative to IL-6 receptor antagonists, such as tocilizumab, for the treatment of CAR-T-associated cytokine release syndrome in the clinic which warrants further clinical evaluation. Figure 1. Dose dependent effect of duvelisib on IL-6 secretion in co-culture of CART19, Ramosluc, and iDC after 48 hours (a) Dose dependent inhibition of CART19 mediated cytotoxicity using duvelisib (b) Duvelisib effectively lowers IL-6 plasma level in an immunocompetent BALB/cJ mouse model of CRS (c). (** p≤ 0.01 and ns p>0.05). Figure 1 Disclosures Cooper: Wugen: Consultancy, Current equity holder in private company, Patents & Royalties. Pachter:Verastem Therapeutics: Current Employment. DiPersio:Magenta Therapeutics: Membership on an entity's Board of Directors or advisory committees.
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- 2020
43. Antibody-Drug Conjugates Targeting CD45 Plus Janus Kinase (JAK) Inhibitors As Conditioning for Allogeneic Hematopoietic Stem Cell Transplantation
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Matthew L. Cooper, Michael P. Rettig, Stephen P. Persaud, John F. DiPersio, and Julie Ritchey
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Transplantation ,business.industry ,medicine.medical_treatment ,Myeloid leukemia ,Hematology ,Hematopoietic stem cell transplantation ,Haematopoiesis ,surgical procedures, operative ,medicine.anatomical_structure ,Immune system ,Minor histocompatibility antigen ,medicine ,Cancer research ,Bone marrow ,Stem cell ,Janus kinase ,business - Abstract
Introduction Allogeneic hematopoietic stem cell transplantation (alloHSCT) is a potentially curative therapy for the treatment of hematologic diseases. AlloHSCT is associated with significant treatment-related morbidity and mortality from conditioning-related toxicities and graft-versus-host disease (GvHD), which limits its use to the most life-threatening indications, such as acute myeloid leukemia (AML). However, for conditions like AML that are primarily diagnosed in elderly patients, alloHSCT may be contraindicated due to poor patient functional status or medical comorbidities. Thus, an unmet clinical need exists for novel, highly-effective alloHSCT conditioning regimens with greater tolerability and minimal toxicity. Objectives Previously, antibody-drug conjugates (ADCs) composed of a CD45.2 antibody bound to the ribosome-inactivating protein saporin (CD45-SAP) were shown to allow high-level engraftment of syngeneic murine hematopoietic stem cells (HSCs). Here, we describe ADC-based conditioning regimens for murine alloHSCT which overcome immune barriers to engraftment imposed by minor histocompatibility antigen (miHA) and major histocompatibility complex (MHC) mismatches. Methods Mice were conditioned for HSCT with 3 mg/kg CD45-SAP 7 days prior to infusion of 10 × 106 bone marrow cells. Haploidentical F1-to-parent (CB6F1→B6) and miHA-mismatched (BALB/c→DBA/2) HSCT models were used. For GvHD studies, a parent-to-F1 (B6→CB6F1) model was used in which recipients were infused with 25 × 106 donor splenocytes after CD45-SAP treatment or sublethal irradiation. Results CD45-SAP combined with T cell depletion was sufficient for high-level engraftment in our alloHSCT models (Fig 1). The selective Janus kinase (JAK) inhibitor baricitinib, previously shown by our lab to prevent GvHD, also permitted HSC engraftment when mice received the drug during the peri-transplant period (Fig 2A-B). Graft stability in baricitinib-treated mice was optimized by either combining daily baricitinib treatment with pre-transplant T cell depletion, or by delivering baricitinib via continuous infusion (Fig 2C-D). Notably, CD45-SAP conditioned mice showed minimal morbidity or mortality from GvHD when infused with allogeneic splenocytes, whereas mice conditioned with sublethal irradiation developed acute GvHD. (Fig 3). Conclusion CD45-SAP combined with T cell depletion and/or pharmacologic immunomodulation with baricitinib effectively conditioned mice for engraftment of mismatched HSCs. Strikingly, mice conditioned with CD45-SAP did not develop GvHD even when infused with high doses of allogeneic splenocytes. These studies provide proof-of-principle evidence that targeted immunotherapeutics (ADCs plus JAK inhibitors) can prepare HSCT recipients for engraftment of allogeneic donor HSCs with minimal toxicities and without development of GvHD.
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- 2020
44. Accuracy of ultrasound in the diagnosis of classic metaphyseal lesions using radiographs as the gold standard
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S. Gregory Jennings, Lisa R. Delaney, Matthew R. Wanner, Roberta A. Hibbard, Boaz Karmazyn, Matthew L. Cooper, Andrew J. Shold, and Megan B. Marine
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Child abuse ,Male ,medicine.medical_specialty ,Skeletal survey ,Radiography ,Metaphysis ,Sensitivity and Specificity ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,Fractures, Bone ,0302 clinical medicine ,Cohen's kappa ,030225 pediatrics ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Child Abuse ,Neuroradiology ,Ultrasonography ,business.industry ,Infant ,Gold standard (test) ,Reference Standards ,medicine.anatomical_structure ,Pediatrics, Perinatology and Child Health ,Female ,Radiology ,business ,Epiphyses ,Kappa - Abstract
Diagnosis of classic metaphyseal lesions (CMLs) in children suspected for child abuse can be challenging. Ultrasound (US) can potentially help diagnose CMLs. However, its accuracy is unknown. To evaluate the accuracy of US in the diagnosis of CMLs using skeletal survey reports as the gold standard. US of the metaphysis was performed in three patient groups age
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- 2019
45. Osteomyelitis of the ribs in children: a rare and potentially challenging diagnosis
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Boaz Karmazyn, S. Gregory Jennings, Matthew R. Wanner, Allison M. Crone, Matthew L. Cooper, and Thomas G. Fox
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Diagnostic Imaging ,Male ,medicine.medical_specialty ,Adolescent ,Ribs ,030218 nuclear medicine & medical imaging ,Diagnosis, Differential ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Leukocytosis ,Abscess ,Child ,Neuroradiology ,Retrospective Studies ,Ultrasonography ,Rib cage ,medicine.diagnostic_test ,business.industry ,Osteomyelitis ,Infant ,Magnetic resonance imaging ,medicine.disease ,Magnetic Resonance Imaging ,Radiography ,Erythrocyte sedimentation rate ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Female ,Radiology ,medicine.symptom ,Chest radiograph ,business ,Tomography, X-Ray Computed ,030217 neurology & neurosurgery - Abstract
Rib osteomyelitis is rare in children and can mimic other pathologies. Imaging has a major role in the diagnosing rib osteomyelitis. To evaluate clinical presentation and imaging findings in children with rib osteomyelitis. We performed a retrospective (2009–2018) study on children with rib osteomyelitis verified by either positive culture or pathology. We excluded children with multifocal osteomyelitis or empyema necessitans. We reviewed medical charts for clinical, laboratory and pathology data, and treatment. All imaging modalities for rib abnormalities were evaluated for presence and location of osteomyelitis and abscess. We calculated descriptive statistics to compare patient demographics, clinical presentation and imaging findings. The study group included 10 children (6 boys, 4 girls), with an average age of 7.3 years (range, 3 months to 15.9 years). The most common clinical presentations were fever (n=8) and pain (n=5). Eight children had elevated inflammatory indices (leukocytosis, erythrocyte sedimentation rate [ESR], C-reactive protein [CRP]). Localized chest wall swelling was found initially in six children and later in two more children. Rib osteomyelitis was suspected on presentation in only two children. All children had chest radiographs. Rib lytic changes were found on only one chest radiograph, in two of the four ultrasound studies, and in four of eight CTs. Bone marrow signal abnormalities were seen in all eight MRIs. In nine children the osteomyelitis involved the costochondral junction. Six children had an associated abscess. Staphylococcus aureus was cultured in eight children. Osteomyelitis was diagnosed based on pathology in one child with negative cultures. While rib osteomyelitis is rare, imaging findings of lytic changes at the costochondral junction combined with a history of fever, elevated inflammatory markers or localized soft-tissue swelling in the chest should raise suspicion for this disease.
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- 2019
46. Mechanisms of Antigen Escape: Discovery of a Novel CD19 Point Mutation That Renders Leukemic Tumor Cells Resistant to Anti-CD19 Chimeric Antigen Receptor (CAR) T Cell Therapy
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Alun Carter, John M. Rossi, Christopher A. Miller, Armin Ghobadi, Jenny Nater, Joseph M. Benoun, Francesca Ferraro, Matthew L. Baker, Adrian Bot, Francesca Milletti, Nathalie Scholler, Victor Tam, Matthew L. Cooper, and Remus Vezan
- Subjects
Transplantation ,biology ,Chemistry ,Anti cd19 ,Point mutation ,Tumor cells ,Cell Biology ,Hematology ,CD19 ,Chimeric antigen receptor ,Antigen ,biology.protein ,Cancer research ,Molecular Medicine ,Immunology and Allergy ,CAR T-cell therapy - Published
- 2021
47. Abstract 1127: Adarza's ZIVA multiplex protein detection platform utilizes a label-free technology to simultaneously monitor murine and human inflammation cytokines in a CAR-T model system
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Matthew L. Cooper, Alun Carter, Ernest Mueller, Jon J. Schmuke, and You Zhou
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Cancer Research ,Oncology ,Computer science ,medicine ,Model system ,Inflammation ,Multiplex ,Computational biology ,Car t cells ,medicine.symptom ,Protein detection ,Label free - Abstract
We have used Arrayed Imaging Reflectometry (AIR™), a label-free protein microarray technology that relies on the target binding-induced perturbation of an antireflective coating on the surface of a silicon biosensor, to create a multiplex antibody array for the detection of human and murine serum cytokines and inflammatory markers. The biosensor is capable of providing quantitative protein concentrations, with limits of detection in the low picograms per mL. Provided in a standard 96-well microplate format, the label-free nature of the array enables flexible creation of standard or custom panels for development of model systems. Here, we demonstrate a custom 22 plex panel developed in collaboration with WUGEN Inc. to provide multi-species cytokine analysis in humanized CAR-T cell models for the evaluation of biologic product efficacy and safety. Samples from in vitro and in vivo models developed for the evaluation of CAR-T activity were analyzed and demonstrated a novel platform for concurrent cross-species cytokine analysis on a single array. Results are evaluated for sensitivity, precision, and accuracy with ZIVA assays comparable to traditional ELISAs. With array capabilities from low to hundreds of plex combined with a hands-free, automation-friendly workflow enabled by the ZIVA instrument, the technology has been designed for the ultimate user-experience. Citation Format: Jon J. Schmuke, Alun Carter, You Zhou, Ernest Mueller, Matt Cooper. Adarza's ZIVA multiplex protein detection platform utilizes a label-free technology to simultaneously monitor murine and human inflammation cytokines in a CAR-T model system [abstract]. In: Proceedings of the Annual Meeting of the American Association for Cancer Research 2020; 2020 Apr 27-28 and Jun 22-24. Philadelphia (PA): AACR; Cancer Res 2020;80(16 Suppl):Abstract nr 1127.
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- 2020
48. Antibody-drug conjugates targeting CD45 plus Janus kinase inhibitors permit allogeneic hematopoietic stem cell transplantation with minimal treatment-related toxicity
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Stephen P Persaud, Matthew L. Cooper, Julie K. Ritchey, Michael P. Rettig, and John F. DiPersio
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Immunology ,Immunology and Allergy - Abstract
Allogeneic hematopoietic stem cell transplantation (alloHSCT) is a potentially curative therapy for hematologic diseases. However, toxicities from chemotherapy- or irradiation-based transplant conditioning, as well as graft-versus-host disease (GvHD), limit the use of alloHSCT to the most severe diseases. Novel conditioning regimens able to achieve donor engraftment with minimal adverse effects for the patient could greatly expand the safe applicability of alloHSCT to a wider variety of diseases. Antibody-drug conjugates targeting CD45 (CD45-ADC) have been shown previously to permit engraftment in murine syngeneic HSCT models. We set out to extend this approach to the allogeneic setting, developing CD45-ADC-based regimens able to both make marrow space for donor stem cells and overcome immune barriers to their engraftment. CD45-ADC combined with CD4+ and CD8+ T cell depletion was sufficient for engraftment in MHC-matched (BALB to DBA/2) and MHC-mismatched (CB6F1 to B6) murine alloHSCT models. The selective Janus kinase inhibitor baricitinib, shown by our lab to prevent GvHD, also inhibited host-versus-graft responses and allowed allogeneic engraftment when combined with CD45-ADC. In our alloHSCT models, up to 90% donor chimerism was achieved in over 70% of mice treated with CD45-ADC plus baricitinib. Finally, unlike mice conditioned with irradiation, mice treated with CD45-ADC did not develop GvHD when infused with allogeneic splenocytes. In conclusion, CD45-ADC plus baricitinib provides a safe, effective approach to alloHSCT conditioning in mice. These studies demonstrate the promise of immunotherapeutic strategies to achieve transplant tolerance while minimizing treatment-related morbidity and mortality.
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- 2020
49. Transfer of Cell-Surface Antigens by Scavenger Receptor CD36 Promotes Thymic Regulatory T Cell Receptor Repertoire Development and Allo-tolerance
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Whitney E. Purtha, Brian S. Kim, Mark S. Anderson, Emilie V. Russler-Germain, Mark A. Schroeder, Jaebok Choi, Takeshi Egawa, Matthew L. Cooper, You W. Zhou, Justin S. A. Perry, John F. DiPersio, Chyi-Song Hsieh, Byeong Chel Lee, Vanessa Salazar, and Nada A. Abumrad
- Subjects
0301 basic medicine ,CD36 Antigens ,CD36 ,T-Lymphocytes ,Cell ,T-Lymphocytes, Regulatory ,Transgenic ,Apoptotic cell clearance ,scavenger receptor ,Mice ,Receptors ,Immunology and Allergy ,2.1 Biological and endogenous factors ,Aetiology ,Inbred BALB C ,Bone Marrow Transplantation ,Mice, Knockout ,efferocytosis ,medullary thymic epithelial cells ,Mice, Inbred BALB C ,tolerance ,hemic and immune systems ,Regulatory ,Cell biology ,antigen transfer ,Surface ,medicine.anatomical_structure ,Infectious Diseases ,regulatory T cells ,Antigen ,Antigens, Surface ,Biotechnology ,Homologous ,Regulatory T cell ,Knockout ,CD8 Antigens ,1.1 Normal biological development and functioning ,Immunology ,Receptors, Antigen, T-Cell ,Mice, Transgenic ,chemical and pharmacologic phenomena ,Thymus Gland ,Biology ,Article ,03 medical and health sciences ,Underpinning research ,medicine ,Immune Tolerance ,Transplantation, Homologous ,Animals ,Scavenger receptor ,Antigens ,apoptotic cell clearance ,Transplantation ,Inflammatory and immune system ,Epithelial Cells ,Dendritic Cells ,T-Cell ,030104 developmental biology ,biology.protein ,Bone marrow ,thymic dendritic cells - Abstract
Summary The development of T cell tolerance in the thymus requires the presentation of host proteins by multiple antigen-presenting cell (APC) types. However, the importance of transferring host antigens from transcription factor AIRE-dependent medullary thymic epithelial cells (mTECs) to bone marrow (BM) APCs is unknown. We report that antigen was primarily transferred from mTECs to CD8α + dendritic cells (DCs) and showed that CD36, a scavenger receptor selectively expressed on CD8α + DCs, mediated the transfer of cell-surface, but not cytoplasmic, antigens. The absence of CD8α + DCs or CD36 altered thymic T cell selection, as evidenced by TCR repertoire analysis and the loss of allo-tolerance in murine allogeneic BM transplantation (allo-BMT) studies. Decreases in these DCs and CD36 expression in peripheral blood of human allo-BMT patients correlated with graft-versus-host disease. Our findings suggest that CD36 facilitates transfer of mTEC-derived cell-surface antigen on CD8α + DCs to promote tolerance to host antigens during homeostasis and allo-BMT.
- Published
- 2018
50. Diagnosis of primary ciliary dyskinesia: An official American thoracic society clinical practice guideline
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M. Leigh Anne Daniels, Scott D. Sagel, Deepika Polineni, Lynn Ehrne, Sam J. Daniel, Matthew L. Cooper, Maimoona A. Zariwala, Michele Manion, Margaret Rosenfeld, Thomas W. Ferkol, Billy Anton, Valery Lavergne, Stephanie M. Ware, Maureen B. Josephson, Jessica E. Pittman, Elena Guadagno, Lawrence M. Nogee, Sharon D. Dell, Michael R. Knowles, Mark A. Chilvers, Margaret W. Leigh, Stephanie D. Davis, Carlos Milla, Marcus Herbert Jones, Ibrahim A. Janahi, Ozge Yilmaz, Lucy Morgan, Tori Eastvold, Kenneth N. Olivier, and Adam J. Shapiro
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Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Critical Care and Intensive Care Medicine ,Sensitivity and Specificity ,Cohort Studies ,03 medical and health sciences ,0302 clinical medicine ,Multidisciplinary approach ,medicine ,Humans ,Genetic Predisposition to Disease ,Medical physics ,Cilia ,Prospective Studies ,030212 general & internal medicine ,Grading (education) ,Diagnostic Techniques and Procedures ,Societies, Medical ,Retrospective Studies ,Primary ciliary dyskinesia ,Kartagener Syndrome ,business.industry ,Diagnostic test ,Guideline ,medicine.disease ,United States ,ATS Clinical Practice Guideline ,Clinical Practice ,Cross-Sectional Studies ,Systematic review ,030228 respiratory system ,Practice Guidelines as Topic ,business - Abstract
Background: This document presents the American Thoracic Society clinical practice guidelines for the diagnosis of primary ciliary dyskinesia (PCD). Target Audience: Clinicians investigating adult and pediatric patients for possible PCD. Methods: Systematic reviews and, when appropriate, meta-Analyses were conducted to summarize all available evidence pertinent to our clinical questions. Evidence was assessed using the GRADE (Grading of Recommendations, Assessment, Development and Evaluation) approach for diagnosis and discussed by amultidisciplinary panelwith expertise in PCD. Predetermined conflict-of-interest management strategies were applied, and recommendations were formulated, written, and graded exclusively by the nonconflicted panelists. Three conflicted individuals were also prohibited from writing, editing, or providing feedback on the relevant sections of the manuscript. Results: After considering diagnostic test accuracy, confidence in the estimates for each diagnostic test, relative importance of test results studied, desirable and undesirable direct consequences of each diagnostic test, downstream consequences of each diagnostic test result, patient values and preferences, costs, feasibility, acceptability, and implications for health equity, the panel made recommendations for or against the use of specific diagnostic tests as compared with using the current reference standard (transmission electron microscopy and/or genetic testing) for the diagnosis of PCD. Conclusions: The panel formulated and provided a rationale for the direction as well as for the strength of each recommendation to establish the diagnosis of PCD.
- Published
- 2018
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