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Context Several plant traits are associated with resistance to fire, thus fire-resistant species may give rise to more fire-resistant landscapes. However, up-scaling from plant traits to landscape- and regional-scale fire effects remains a challenge. Objectives We test two hypotheses: (1) forests composed of fire-resistant species experience lower fire severity than forests composed of less fire-resistant species; and (2) wildfires affecting forests with greater fire resistance experience smaller patches of high-severity fire. Methods We used a predictive map of existing forest types (major tree species dominating forest composition) and a trait-based map of fire resistance. We examined large-scale spatial patterns of fire severity derived from Landsat imagery in 611 wildfires across the range of western larch in the Inland Northwest USA (1985–2014). We then applied structural equation modeling to study complex relationships between fire resistance and high-severity fire in each wildfire. Results Forest types dominated by fire-resister species (e.g., ponderosa pine) experienced lower fire severity than forest types dominated by non-resister species such as lodgepole pine (fire-embracer) and subalpine fir (fire-avoider). We found a strong negative correlation between the fire resistance index and average values of the relative differenced normalized burn ratio, as well as an indirect relationship between fire resistance and high-severity patch size. Conclusions The large-scale differences in fire severity among forest types generally reflect the degree of fire resistance that fire-related traits confer to individual trees species, providing evidence that incorporating plant traits has the potential to assist in assessing fire resistance at large spatial scales.

In the midst of ardent calls for decolonizing and building a more anti-racist archaeology, whiteness has gone largely unacknowledged in the history of disciplinary thought and practice. As a point of departure, this article asks: why are there so many White archaeologists? In addressing this question, I suggest that the development of early archaeological method and thought was deeply affected by White supremacy. In presenting the two case studies of Montroville Dickson and Flinders Petrie, I suggest that a radical new history of archaeology is needed if we are to build a more equitable, anti-racist field in the future. Central to this process to recognizing the role that whiteness has played and continues to play in archaeological practice and pedagogy.

A method is proposed to calculate pore pressure at the bit while drilling using all data typically available in a modern drilling operation. This method utilizes a machine learning approach that can estimate pore pressures at the same or lesser range of uncertainty as traditional methods and can do so at the bit in real-time. Traditional pore pressure estimation while drilling utilizes a combination of data sources most of which are detected from logging while drilling (LWD) sensors placed 100's of feet behind the drill bit (where resistivity, sonic, density etc. tools are commonly placed). Furthermore, smoothing algorithms are often used to average the detection data thus increasing the offset from the drill bit to the estimated pore pressure calculation. The result of this is that the pore pressure calculation while drilling is only relevant to the formation that has already been penetrated and not being actively drilled. In hole sections where minor pore pressure changes can have significant impact on operational decisions this has obvious disadvantages. However, while drilling a well multiple sources of data from the drill bit itself are typically left unused in pore pressure calculation. Whereas traditional methods give an estimate of pore pressure after the well has already experienced a change in pressure, this method can calculate pore pressure at the bit, as the change is experienced. Another benefit of applying a machine learning model to pore pressure calculation while drilling is that the computational time is almost instantaneous.

Conservation of old-growth forests has become an increasingly important objective of Forest Service managers over the last three decades. The US Forest Service recently made changes to policies that prohibit cutting of live trees >53 cm (the “21-inch rule”). We review the disturbance ecology of dry and mesic old-growth forests of Oregon and contrast conservation policies for these two forest types. We describe the development of age-based alternatives to the 21-inch rule on the Klamath Reservation and in the Malheur National Forest in eastern Oregon. We conclude by outlining an adaptive management strategy to conserve dry forest old growth that seeks to restore the ecological processes that perpetuate old tree populations over time. We argue that what is good for dry forest ecosystems is good for dry forest old growth, especially in the face of changing climate and disturbance regimes.

Development of incisional hernia (IH) is multifactorial but inflammation and abdominal wall ECM (extracellular matrix) disorganization are key pathological events. We investigated if the differential expression of fibroblast biomarkers reflects the cellular milieu and the dysregulated ECM in IH tissues. Expression of fibroblast biomarkers, including connective tissue growth factor, alpha-smooth muscle actin (α-SMA), CD34 (cluster of differentiation 34), cadherin-11 and fibroblast specific protein 1 (FSP1), was examined by histology and immunofluorescence in the hernial-fascial ring/neck tissue (HRT) and hernia sack tissue (HST) harvested from the patients undergoing hernia surgery and compared with normal fascia (FT) and peritoneum (PT) harvested from brain-dead healthy subjects undergoing organ procurement for transplantation. The H&E staining revealed alterations in tissue architecture, fibroblast morphology, and ECM organization in the IH tissues compared to control. The biomarker for undifferentiated fibroblasts, CD34, was significantly higher in HST and decreased in HRT than the respective FT and PT controls. Also, the findings revealed an increased level of CTGF (connective tissue growth factor) with decrease in α-SMA in both HRT and HST compared to the controls. In addition, an increased level of FSP1 (fibroblast specific protein 1) and cadherin-11 in HRT with decreased level in HST were observed relative to the respective controls (FT and PT). Hence, these findings support the heterogeneity of fibroblast population at the laparotomy site that could contribute to the development of IH. Understanding the mechanisms causing the phenotype switch of these fibroblasts would open novel strategies to prevent the development of IH following laparotomy.

Background Incisional hernias (IH) following a laparotomy, on average, occur in 10–20% of patients, however, little is known about its molecular basis. Thus, a better understanding of the molecular mechanisms could lead to the identification of key target(s) to intervene pre-and post-operatively. Methods We examined the current literature describing the molecular mechanisms of IH and overlap these factors with smoking, abdominal aortic aneurysm, obesity, diabetes mellitus, and diverticulitis. Results The expression levels of collagen I and III, matrix metalloproteinases, and tissue inhibitors of metalloproteases are abnormal in the extracellular matrix (ECM) of IH patients and ECM disorganization has an overlap with these comorbid conditions. Conclusion Understanding the pathophysiology of IH development and associated risk factors will allow physicians to identify patients that may be at increased risk for IH and to possibly act preemptively to decrease the incidence of IH.

Throughout its history, New York has received several archaeological objects as gifts, including a mid-fourth-century BCE Greek funerary stele. Dr John Huston Finley, the third president of City College, saw a stele when he was in Greece and asked the Greek Government to gift the stele to the college. The stele, dubbed the ‘Marathon Stone’ by Finley, was dedicated and proudly displayed at City College, now of the City University of New York. This article explores the gift’s context by drawing on contemporary newspaper reports, Finley’s tenuous association of the stele with the battle of Marathon, and the gifting of an archaeological object as a means for promoting ties between City College and Greece. The article then examines the context for the stele’s display, the Neo-Antique Lewisohn Stadium, and argues that the display of the stele and erection of Lewisohn Stadium both embodied Finley’s aspirations for City College to rival Columbia and New York Universities. The demise of the stadium in 1973 and the removal of the stele to a basement signaled a major shift in the significance of the classics, classical art, and Neo-Antique architecture at City College, as well as the changing priorities of the institution.

Non-native plant invasions are often catalyzed by wildfires and may alter the structure, function, and composition of ecosystems. Of particular concern are non-native annual grasses that promote increased fire frequency and compete with native vegetation for early season moisture. While these effects are well studied in non-forested ecosystems, relatively few studies document invasions of non-native annual grasses in forested ecosystems. We document non-native plant invasion following repeated high-severity wildfire in mixed-conifer/hardwood forests dominated by Douglas-fir (Pseudotsuga menziesii) in the Klamath Mountains of northern California. Despite great concern regarding the loss of conifer dominance and transitions to non-forested states related to recent and projected increases in wildfire activity, there is little known about invasions of non-native plant species following fire in this region. Non-native plant species capable of long-distance dispersal had an average total cover of 26% and were ubiquitous across a systematic, gridded sample of twenty 800 m2 plots. Non-native forbs included multiple species of common post-disturbance invaders (e.g. Cirsium vulgare, Senecio sylvaticus, Lactuca serriola). Non-native annual grasses comprised more of the vegetative cover than non-native forbs (17% vs. 9%), and were dominated by two species, Aira caryophyllea and Vulpia myuros, which reached as high as 80% cover. Our findings indicate that non-native annual grasses are a novel stressor that may accelerate projected loss of conifer dominance in the Klamath Mountains by facilitating fire spread and increasing competition for early season soil moisture. Additional monitoring will be crucial to understanding the impacts of non-native plants as fire activity in this region continues to increase.

Many disease pathologies, particularly in the eye, are induced by oxidative stress. In particular, injury to the optic nerve (ON), or optic neuropathy, is one of the most common causes of vision loss. Traumatic optic neuropathy (TON) occurs when the ON is damaged following blunt or penetrating trauma to either the head or eye. Currently, there is no effective treatment for TON, only management options, namely the systematic delivery of corticosteroids and surgical decompression of the optic nerve. Unfortunately, neither option alleviates the generation of reactive oxygen species (ROS) which are responsible for downstream damage to the ON. Additionally, the systemic delivery of corticosteroids can cause fatal off-target effects in cases with brain involvement. In this study, we developed a tunable injectable hydrogel delivery system for local methylene blue (MB) delivery using an internal method of crosslinking. MB was chosen due to its ROS scavenging ability and neuroprotective properties. Our MB-loaded polymeric scaffold demonstrated prolonged release of MB as well as in situ gel formation. Additionally, following rheological characterization, these alginate hydrogels demonstrated minimal cytotoxicity to human retinal pigment epithelial cells in vitro and exhibited injection feasibility through small-gauge needles. Our chosen MB concentrations displayed a high degree of ROS scavenging following release from the alginate hydrogels, suggesting this approach may be successful in reducing ROS levels following ON injury, or could be applied to other ocular injuries.

The purpose of this study was to investigate the mechanism of potential droplet formation in response to air puff deformation with two noncontact tonometers (NCTs).Twenty healthy volunteers were examined using two NCTs, Ocular Response Analyzer and Corvis ST, and two contact tonometers, iCare and Tono-Pen. High-speed videos of the tear film response were captured with at spatial resolution of 20 microns/pixel at 2400 fps. Droplet size, droplet velocity, distance between air puff impact location, and the tear meniscus-lid margin were characterized.One subject was excluded due to technical issues. Droplets were detected only in tests with instilled eye drop. Videos showed the tear film rolls away from the apex while remaining adherent to the ocular surface due to the tendency of the fluid to remain attached to a solid surface explained by the Coanda effect. Twelve out of 38 videos with an eye drop administration showed droplet formation. Only one resulted in droplets with predominantly forward motion, which had the shortest distance between air puff impact location and lower meniscus. This distance on average was 5.9 ± 1.1 mm. The average droplet size was 500 ± 200 µm.Results indicate no droplet formation under typical clinical setting. Hence, standard clinical use of NCT tests is not expected to cause droplets. NCT testing with eye drop administration showed droplet formation at the inferior eyelid boundary, which acts as a barrier and interrupts tear flow.Study of tear film interaction with NCT air puff shows that these tonometers are not expected to cause droplet formation in standard use and that if external drops are required, both eyelids should be held if patients need assistance to maintain open eyes to avoid droplets with predominantly forward motion.

The etiology of age-related cortical cataracts is not well understood but is speculated to be related to alterations in cell adhesion and/or the changing mechanical stresses occurring in the lens with time. The role of cell adhesion in maintaining lens transparency with age is difficult to assess because of the developmental and physiological roles that well-characterized adhesion proteins have in the lens. This report demonstrates that Arvcf, a member of the p120-catenin subfamily of catenins that bind to the juxtamembrane domain of cadherins, is an essential fiber cell protein that preserves lens transparency with age in mice. No major developmental defects are observed in the absence of Arvcf, however, cortical cataracts emerge in all animals examined older than 6-months of age. While opacities are not obvious in young animals, histological anomalies are observed in lenses at 4-weeks that include fiber cell separations, regions of hexagonal lattice disorganization, and absence of immunolabeled membranes. Compression analysis of whole lenses also revealed that Arvcf is required for their normal biomechanical properties. Immunofluorescent labeling of control and Arvcf-deficient lens fiber cells revealed a reduction in membrane localization of N-cadherin, β-catenin, and αN-catenin. Furthermore, super-resolution imaging demonstrated that the reduction in protein membrane localization is correlated with smaller cadherin nanoclusters. Additional characterization of lens fiber cell morphology with electron microscopy and high resolution fluorescent imaging also showed that the cellular protrusions of fiber cells are abnormally elongated with a reduction and disorganization of cadherin complex protein localization. Together, these data demonstrate that Arvcf is required to maintain transparency with age by mediating the stability of the N-cadherin protein complex in adherens junctions.

As contemporary wildfire activity intensifies across the western United States, there is increasing recognition that a variety of forest management activities are necessary to restore ecosystem function and reduce wildfire hazard in dry forests. However, the pace and scale of current, active forest management is insufficient to address restoration needs. Managed wildfire and landscape-scale prescribed burns hold potential to achieve broad-scale goals but may not achieve desired outcomes where fire severity is too high or too low. To explore the potential for fire alone to restore dry forests, we developed a novel method to predict the range of fire severities most likely to restore historical forest basal area, density, and species composition in forests across eastern Oregon. First, we developed probabilistic tree mortality models for 24 species based on tree characteristics and remotely sensed fire severity from burned field plots. We applied these estimates to unburned stands in four national forests to predict post-fire conditions using multi-scale modeling in a Monte Carlo framework. We compared these results to historical reconstructions to identify fire severities with the highest restoration potential. Generally, we found basal area and density targets could be achieved by a relatively narrow range of moderate-severity fire (roughly 365–560 RdNBR). However, single fire events did not restore species composition in forests that were historically maintained by frequent, low-severity fire. Restorative fire severity ranges for stand basal area and density were strikingly similar for ponderosa pine (Pinus ponderosa) and dry mixed-conifer forests across a broad geographic range, in part due to relatively high fire tolerance of large grand (Abies grandis) and white fir (Abies concolor). Our results suggest historical forest conditions created by recurrent fire are not readily restored by single fires and landscapes have likely passed thresholds that preclude the effectiveness of managed wildfire alone as a restoration tool.

We compared early seral development between stands subject to single and repeated high-severity wildfire in low-elevation, mixed conifer – hardwood forests in the Klamath Mountains, California, USA. We used a before–after, control–impact (BACI) approach to assess changes in the density of conifer regeneration and the cover of multiple components of vegetation structure (conifers, hardwoods, shrubs, forbs, and graminoids) and compare pathways of seral development between plots that burned once and plots that burned twice. Fifty-three field plots were established 6 years following a high-severity fire in 2004. Nineteen of these plots experienced a second high-severity wildfire 11 years later (2015), and all plots were remeasured in 2016–2017. Conifer regeneration was abundant following the first fire but was greatly reduced by the second fire. Plots that did not reburn increased in conifer, hardwood, and shrub cover, whereas plots that reburned increased in forb cover and decreased in shrub, hardwood, and conifer cover. Despite conifer loss, we found little evidence of shifts to nonforested states following repeated fire due to resilience of resprouting hardwoods. Our results indicate that repeated high-severity fire has the potential to protract early seral development and catalyze transitions from mixed conifer – hardwood forest to hardwood-dominated early seral conditions.

Purpose: This review aims to provide an understanding of the history of research on, the biological processes governing the different forms of, and an overview of more recent work on lens regeneration as they will likely prove vital in bringing the study of lens regeneration into the clinic.Methods: A review of the literature on lens regeneration research was conducted.Results: Lens regeneration is characterized by the regrowth or repair of the lens following the removal of either a portion or of the entire lens. A brief history of research on lens regeneration is provided, from the discovery in early antiquity of the ability of some animals to regenerate lost tissue, to the systematic cataloguing of the mechanisms of lens regeneration in the 19th century, until the more modern unraveling of the genetic and biochemical processes governing lens regeneration. The anatomy and physiology of the lens as well as the mechanisms by which the lens develops inform its regenerative capabilities by determining the processes that must occur in order to regrow a new lens or repair a damaged one. Lens regeneration occurs by one of several species-dependent methods: some amphibians can regrow a new lens after complete removal of the old one while some mammals can only repair a damaged lens. This review provides an overview of the mechanisms controlling the different types of lens regeneration.Conclusion: The development and growth of the intact lens influence the mechanisms that govern lens regeneration. Recent advances in the field have begun to apply concepts of the field in the clinic and have made significant progress towards realizing the goal of using lens regeneration to repair a damaged lens in the clinic.

Tree mortality is of considerable concern, but the magnitude and extent of forest canopy decline are relatively unknown in landscapes with high levels of topographic complexity, spatial heterogeneity, and species diversity. We assessed 30 years of canopy decline, including a 5-year period characterized by extreme drought, in one of North America’s most diverse landscapes in the Klamath Mountains of northern California, USA. (1) Characterize tree mortality by species, (2) Quantify temporal and spatial patterns of remotely-sensed canopy decline in relation to climate, (3) Compare canopy decline among vegetation types, topographic settings, and stand structural classes during drought. We characterized tree mortality by species with field data and quantified the role of climate on canopy decline with a 30-year Landsat time series. We assessed and compared the role of topography and stand structure on canopy decline during drought. Most tree mortality and canopy decline occurred at higher elevations in Shasta red fir (Abies magnifica var. shastensis) and subalpine forests. Annual area of canopy decline was positively correlated with summer temperature and minimum vapor pressure deficit but not precipitation. The area of canopy decline was three times greater during the drought. The magnitude of decline was greatest at higher elevations, on more exposed, southwestern slopes, and in stands with old-growth structure. Stands in valleys and low slopes experienced relatively little decline. Our study demonstrates the vulnerability of high elevation, old-growth forests to increasing temperature and suggests the potential for refugia from drought in diverse, heterogeneous landscapes.

There is growing concern that populations of fire-adapted species around the world are at risk of extirpation due to 20th century fire exclusion (i.e. senescence risk). Concurrently, increasing fire activity in many regions is prompting concern that repeated, short-interval fire poses a risk to young stands before trees reach reproductive maturity (i.e. immaturity risk). Conceptual models assessing vulnerability to both risks exist, yet there is a lack of empirically-based studies that assess the effects of anthropogenically-altered fire regimes across the entire range of a fire-adapted species. We used geospatial data on fire occurrence (1900–2015) and a systematic sample of recently re-measured (∼2005–2015) forest inventory plots across the range of a serotinous conifer, knobcone pine (Pinus attenuata), in California and southwestern Oregon, U.S.A. to assess the relative threat of immaturity and senescence risk. We base our assessment on: (1) recent trends in area burned, (2) geographic variability and changes in stand-scale population structure, and (3) patterns of local colonization, extirpation, and population change. The area burned across the species range was lowest during the early and mid-20th century and increased in the early 1980s. Approximately 39% of the range burned between 1984 and 2015 and fire rotation was 81 years for the 25-year period ending in 2015. During this period, approximately 6% of the range of knobcone pine experienced repeated fire, and only 4% of the reburned area (∼0.25% of the entire range) experienced multiple fires at an interval less than 10 years. Most populations of knobcone pine currently exist in a mature or decadent state and we found evidence of recent senescence-related extirpation across approximately 15% of its range. However, we also observed a cumulative expansion of knobcone pine during the last decade, and the rate of colonization (less than half of which was associated with fire) was almost double that of extirpation. Despite high rates of colonization and expansion of knobcone pine in response to recent fires, vulnerability to extirpation varies geographically and remains high in some parts of the species range where wildfire activity has been low. This study provides a rare empirically-based look at the contribution of extirpation and colonization to the range-wide dynamics of a serotinous tree. Our findings underlie the importance of recognizing the different temporal and spatial scales at which contemporary disturbance regimes threaten fire-adapted species, and highlight the potential for alternative pathways of persistence and expansion of serotinous species.

Researchers and managers increasingly recognize enterprise risk management as critical to addressing contemporary fire management challenges. Quantitative wildfire risk assessments contribute by parsing and mapping potentially contradictory positive and negative fire effects. However, these assessments disregard risks to fire responders because they only address social and ecological resources and assets. In this study, we begin to overcome this deficiency by using a novel modeling approach that integrates remote sensing, field inventories, imputation-based vegetation modeling, and empirical models to quantify post-fire snag hazard in space and time. Snag hazard increased significantly immediately post-fire, with severe or extreme hazard conditions accounting for 47%, 83%, and 91% of areas burned at low, moderate and high-severity fire, respectively. Patch-size of severe or extreme hazard positively correlated with fire size, exceeding >20,000 ha (60% of our largest fire) 10-years post-fire when reburn becomes more likely. After 10 years, snag hazard declined rapidly as snags fell or fragmented, but severe or extreme hazard persisted for 20, 30 and 35 years in portions of the low, moderate and high-severity fire areas. Because forests are denser and wildfires burn with greater severity than historically, these hazardous conditions may represent novel management challenges where risk of injury or death to responders outweighs the benefits of directly engaging the fire. Mapping snag hazard with our methodology could improve situational awareness for both decision makers and fire responders as they mitigate risk during fire management. However, as more landscapes burn we anticipate increased responder exposure to extremely hazardous conditions, which may further entrench the wildfire paradox as fire managers weigh current response decisions with future challenges. Aligning land management objectives with wildfire management needs, in part by mapping responder exposure to snags and other hazards, could help overcome the wildfire paradox and produce desirable long-term outcomes. This research also demonstrates the importance of interdisciplinary collaboration to account for risk to all aspects of fire prone social-ecological systems as we learn to live with fire in rapidly changing environments.

INTRODUCTION: Incisional hernias (IH) arise as a complication of patients undergoing a laparotomy. Current literature has assessed the role of extracellular matrix (ECM) disorganization, alterations in type I and type III collagen, matrix metalloproteinases, and tissue inhibitors of metalloproteases on IH. However, there is limited information on the underlying molecular mechanisms that lead to ECM disorganization. AREAS COVERED: We critically reviewed the literature surrounding IH and ECM disorganization and offer a novel pathway that may be the underlying mechanism resulting in ECM disorganization and the immunopathogenesis of IH. EXPERT OPINION: High mobility group box-1 (HMGB-1), a damage-associated molecular pattern, plays an important role in the sterile inflammatory pathway and has been linked to ECM disorganization and the triggering of the NLRP3 inflammasome. Further research to investigate the role of HMGB-1 in the molecular pathogenesis of IH would be critical in identifying novel therapeutic targets in the management of IH formation.

Lack of quantitative observations of extent, frequency, and severity of large historical fires constrains awareness of departure of contemporary conditions from those that demonstrated resistance and resilience to frequent fire and recurring drought. Compare historical and contemporary fire and forest conditions for a dry forest landscape with few barriers to fire spread. Quantify differences in (1) historical (1700–1918) and contemporary (1985–2015) fire extent, fire rotation, and stand-replacing fire and (2) historical (1914–1924) and contemporary (2012) forest structure and composition. Data include 85,750-ha tree-ring reconstruction of fire frequency and extent; > 375,000-ha timber inventory following > 78,900-ha fires in 1918; and remotely-sensed maps of contemporary fire effects and forest conditions. Historically, fires > 20,000 ha occurred every 9.5 years; fire rotation was 14.9 years; seven fires > 40,469 ha occurred during extreme drought (PDSI 15 cm dbh exceeded 120 trees/ha on 40,469 ha (minimum size of contemporary “megafires”) during extreme drought. In this frequent-fire landscape, mixed-severity fire historically influenced lodgepole and adjacent forests. Lack of large, frequent, low-severity fires degrades contemporary forest ecosystems.

Wildland fires (WLF) have become more frequent, larger, and severe with greater impacts to society and ecosystems and dramatic increases in firefighting costs. Forests throughout the range of ponderosa pine in Oregon and Washington are jeopardized by the interaction of anomalously dense forest structure, a warming and drying climate, and an expanding human population. These forests evolved with frequent interacting disturbances including low-severity surface fires, droughts, and biological disturbance agents (BDAs). Chronic low-severity disturbances were, and still are, critical to maintaining disturbance resistance, the property of an ecosystem to withstand disturbance while maintaining its structure and ecological function. Restoration of that historical resistance offers multiple social and ecological benefits. Moving forward, we need a shared understanding of the ecology of ponderosa pine forests to appreciate how restoring resistance can reduce the impacts of disturbances. Given contemporary forest conditions, a warming climate, and growing human populations, we predict continued elevation of tree mortality from drought, BDAs, and the large high-severity WLFs that threaten lives and property as well as ecosystem functions and services. We recommend more comprehensive planning to promote greater use of prescribed fire and management of reported fires for ecological benefits, plus increased responsibility and preparedness of local agencies, communities and individual homeowners for WLF and smoke events. Ultimately, by more effectively preparing for fire in the wildland urban interface, and by increasing the resistance of ponderosa pine forests, we can greatly enhance our ability to live with fire and other disturbances.

Implementation of wildfire- and climate-adaptation strategies in seasonally dry forests of western North America is impeded by numerous constraints and uncertainties. After more than a century of resource and land use change, some question the need for proactive management, particularly given novel social, ecological, and climatic conditions. To address this question, we first provide a framework for assessing changes in landscape conditions and fire regimes. Using this framework, we then evaluate evidence of change in contemporary conditions relative to those maintained by active fire regimes, i.e., those uninterrupted by a century or more of human-induced fire exclusion. The cumulative results of more than a century of research document a persistent and substantial fire deficit and widespread alterations to ecological structures and functions. These changes are not necessarily apparent at all spatial scales or in all dimensions of fire regimes and forest and nonforest conditions. Nonetheless, loss of the once abundant influence of low- and moderate-severity fires suggests that even the least fire-prone ecosystems may be affected by alteration of the surrounding landscape and, consequently, ecosystem functions. Vegetation spatial patterns in fire-excluded forested landscapes no longer reflect the heterogeneity maintained by interacting fires of active fire regimes. Live and dead vegetation (surface and canopy fuels) is generally more abundant and continuous than before European colonization. As a result, current conditions are more vulnerable to the direct and indirect effects of seasonal and episodic increases in drought and fire, especially under a rapidly warming climate. Long-term fire exclusion and contemporaneous social-ecological influences continue to extensively modify seasonally dry forested landscapes. Management that realigns or adapts fire-excluded conditions to seasonal and episodic increases in drought and fire can moderate ecosystem transitions as forests and human communities adapt to changing climatic and disturbance regimes. As adaptation strategies are developed, evaluated, and implemented, objective scientific evaluation of ongoing research and monitoring can aid differentiation of warranted and unwarranted uncertainties.

The U.S. Forest Service is reconsidering policies that limit the size of trees that can be removed in the course of restoration treatments in dry forests of eastern Oregon. To evaluate the effects of diameter limits on the ability of managers to meet restoration objectives, we used an existing network of long‐term research plots to summarize historical and contemporary structure and composition of mixed‐conifer forests within a one million‐ha study area in eastern Oregon. Then, we used a novel thinning simulation procedure to quantify the degree to which thinning using different diameter limits restored stands to historical conditions. Contemporary mixed‐conifer forests within the study area are significantly denser, have more basal area, and have a greater proportion of shade‐tolerant species than historical conditions. Our simulations of thinning under current policy that prohibits cutting of trees ≥53 cm show that a quarter of mixed‐conifer stands cannot be restored to within the historical range of basal area or density. Those stands that could be restored to within historical basal area ranges still had a substantially higher component of shade‐tolerant trees than historical stands. Permitting larger shade‐tolerant trees to be removed allowed restoration of all or most of stands to within historical structural and compositional ranges. Forest conditions in the late 1800s may not necessarily provide the best template for management because climate and disturbance projections suggest that eastern Oregon forests will be less well suited to shade‐tolerant species in the future. Adapting stands to future conditions will require robust monitoring of forest structural and compositional response to restoration treatments.

Lignocellulose is a promising feedstock for biofuel production as a renewable, carbohydrate-rich and globally abundant source of biomass. However, challenges faced include environmental and/or financial costs associated with typical lignocellulose pretreatments needed to overcome the natural recalcitrance of the material before conversion to biofuel. Anaerobic fungi are a group of underexplored microorganisms belonging to the early diverging phylum Neocallimastigomycota and are native to the intricately evolved digestive system of mammalian herbivores. Anaerobic fungi have promising potential for application in biofuel production processes due to the combination of their highly effective ability to hydrolyse lignocellulose and capability to convert this substrate to H2 and ethanol. Furthermore, they can produce volatile fatty acid precursors for subsequent biological conversion to H2 or CH4 by other microorganisms. The complex biological characteristics of their natural habitat are described, and these features are contextualised towards the development of suitable industrial systems for in vitro growth. Moreover, progress towards achieving that goal is reviewed in terms of process and genetic engineering. In addition, emerging opportunities are presented for the use of anaerobic fungi for lignocellulose pretreatment; dark fermentation; bioethanol production; and the potential for integration with methanogenesis, microbial electrolysis cells and photofermentation.

Fire has been an important catalyst of change in Pacific Northwest forests throughout the Holocene. The role of fire varied across this biophysically diverse region prior to European colonization, but fire exclusion and logging drastically altered forest conditions during the 19th and 20th centuries. Despite recent increases in area burned and several large wildfires with devastating social and economic consequences, area burned in recent decades remains far less than under historical regimes across most of the region. Some dry forest landscapes have experienced profound change through uncharacteristically severe fires. In moist and cold forest landscapes, wildfires have enhanced biodiversity through the creation of structurally complex early-seral habitats. Area burned is expected to double or triple in the future under a warming climate. Strategies to adapt to future wildfires vary among historical regimes and biophysical settings and will require collaborative engagement and adaptive management to facilitate ecological change at meaningful scales.

Highlights • Sertoli Leydig cell tumor is a rare ovarian neoplasm. • Symptoms of androgen excess are typical during presentation. • Mainstay of treatment includes cytoreductive surgery with adjuvant chemotherapy. • HIPEC is recommend for advanced or recurrent epithelial ovarian tumors. • HITOC can be considered for metastatic Sertoli Leydig cell tumor of the chest., Sertoli Leydig cell tumor (SLCT) is a rare sex-cord stromal tumor of the ovary that generally has a benign course. Here, we report an unusual case of recurrent, metastatic SLCT and its unique management with a combination of cytoreductive surgery, hyperthermic intraperitoneal chemotherapy, hyperthermic intrathoracic chemotherapy, and systemic chemotherapy.

Measuring the growth rate of non‐model anaerobic microbes typically requires the use of time‐consuming and often destructive manual measurements. Here, an Arduino based automatic pressure evaluation system (A‐APES) was developed to automatically measure the rate of fermentation gas production as a proxy for microbial growth in anaerobic systems. The A‐APES system measures accumulated gas pressure in sealed cultures accurately at high‐resolution, while venting the system at programmed intervals to prevent over pressurization. The utility of A‐APES is demonstrated in this study by quantifying the growth rate and phases of a biomass‐degrading anaerobic gut fungus, which cannot be otherwise measured via conventional techniques due to its association with particulate substrates. Given the utility of the A‐APES approach, we provide a complete construction guide to fabricate the device, which is three times less expensive compared to existing commercial alternatives.

Latent-transforming growth factor beta-binding protein 2 (LTBP-2) is a major component of arterial and lung tissue and of the ciliary zonule, the system of extracellular fibers that centers and suspends the lens in the eye. LTBP-2 has been implicated previously in the development of extracellular microfibrils, although its exact role remains unclear. Here, we analyzed the three-dimensional structure of the ciliary zonule in wild type mice and used a knockout model to test the contribution of LTBP-2 to zonule structure and mechanical properties. In wild types, zonular fibers had diameters of 0.5-1.0 micrometers, with an outer layer of fibrillin-1-rich microfibrils and a core of fibrillin-2-rich microfibrils. LTBP-2 was present in both layers. The absence of LTBP-2 did not affect the number of fibers, their diameters, nor their coaxial organization. However, by two months of age, LTBP-2-depleted fibers began to rupture, and by six months, a fully penetrant ectopia lentis phenotype was present, as confirmed by in vivo imaging. To determine whether the seemingly normal fibers of young mice were compromised mechanically, we compared zonule stress/strain relationships of wild type and LTBP-2-deficient mice and developed a quasi-linear viscoelastic engineering model to analyze the resulting data. In the absence of LTBP-2, the ultimate tensile strength of the zonule was reduced by about 50%, and the viscoelastic behavior of the fibers was altered significantly. We developed a harmonic oscillator model to calculate the forces generated during saccadic eye movement. Model simulations suggested that mutant fibers are prone to failure during rapid rotation of the eyeball. Together, these data indicate that LTBP-2 is necessary for the strength and longevity of zonular fibers, but not necessarily for their formation.

A cell’s insoluble microenvironment has increasingly been shown to exert influence on its function. In particular, matrix stiffness and adhesiveness strongly impact behaviors such as cell spreading and differentiation, but materials that allow for independent control of these parameters within a fibrous, stromal-like microenvironment are very limited. In the current work, we devise a self-assembling peptide (SAP) system that facilitates user-friendly control of matrix stiffness and RGD (Arg-Gly-Asp) concentration within a hydrogel possessing a microarchitecture similar to stromal extracellular matrix. In this system, the RGD-modified SAP sequence KFE-RGD and the scrambled sequence KFE-R DG can be directly swapped for one another to change RGD concentration at a given matrix stiffness and total peptide concentration. Stiffness is controlled by altering total peptide concentration, and the unmodified base peptide KFE-8 can be included to further increase this stiffness range due to its higher modulus. With this tunable system, we demonstrate that human mesenchymal stem cell morphology and differentiation are influenced by both gel stiffness and the presence of functional cell binding sites in 3D culture. Specifically, cells 24 hours after encapsulation were only able to spread out in stiffer matrices containing KFE-RGD. Upon addition of soluble adipogenic factors, soft gels facilitated the greatest adipogenesis as determined by the presence of lipid vacuoles and PPARγ-2 expression, while increasing KFE-RGD concentration at a given stiffness had a negative effect on adipogenesis. This three-component hydrogel system thus allows for systematic investigation of matrix stiffness and RGD concentration on cell behavior within a fibrous, three-dimensional matrix. Statement of Significance Physical cues from a cell’s surrounding environment—such as the density of cell binding sites and the stiffness of the surrounding material—are increasingly being recognized as key regulators of cell function. Currently, most synthetic biomaterials used to independently tune these parameters lack the fibrous structure characteristic of stromal extracellular matrix, which can be important to cells naturally residing within stromal tissues. In this manuscript, we describe a 3D hydrogel encapsulation system that provides user-friendly control over matrix stiffness and binding site concentration within the context of a stromal-like microarchitecture. Binding site concentration and gel stiffness both influenced cell spreading and differentiation, highlighting the utility of this system to study the independent effects of these material properties on cell function.

Wildfires pose a unique challenge to conservation in fire-prone regions, yet few studies quantify the cumulative effects of wildfires on forest dynamics (i.e., changes in structural conditions) across landscape and regional scales. We assessed the contribution of wildfire to forest dynamics in the eastern Cascade Mountains, USA from 1985 to 2010 using imputed maps of forest structure (i.e., tree size and canopy cover) and remotely sensed burn severity maps. We addressed three questions: (1) How do dynamics differ between the region as a whole and the unburned portion of the region? (2) How do dynamics vary among vegetation zones differing in biophysical setting and historical fire frequency? (3) How have forest structural conditions changed in a network of late successional reserves (LSRs)? Wildfires affected 10% of forests in the region, but the cumulative effects at this scale were primarily slight losses of closed-canopy conditions and slight gains in open-canopy conditions. In the unburned portion of the region (the remaining 90%), closed-canopy conditions primarily increased despite other concurrent disturbances (e.g., harvest, insects). Although the effects of fire were largely dampened at the regional scale, landscape scale dynamics were far more variable. The warm ponderosa pine and cool mixed conifer zones experienced less fire than the region as a whole despite experiencing the most frequent fire historically. Open-canopy conditions increased slightly in the mixed conifer zone, but declined across the ponderosa pine zone even with wildfires. Wildfires burned 30% of the cold subalpine zone, which experienced the greatest increase in open-canopy conditions and losses of closed-canopy conditions. LSRs were more prone to wildfire than the region as a whole, and experienced slight declines in late seral conditions. Despite losses of late seral conditions, wildfires contributed to some conservation objectives by creating open habitats (e.g., sparse early seral and woodland conditions) that otherwise generally decreased in unburned landscapes despite management efforts to increase landscape diversity. This study demonstrates the potential for wildfires to contribute to regional scale conservation objectives, but implications for management and biodiversity at landscape scales vary geographically among biophysical settings, and are contingent upon historical dynamics and individual species habitat preferences.

Family, twin and adoption studies demonstrate clearly that alcohol dependence and alcohol use disorders are phenotypically complex and heritable. The heritability of alcohol use disorders is estimated at approximately 50-60% of the total phenotypic variability. Vulnerability to alcohol use disorders can be due to multiple genetic or environmental factors or their interaction which gives rise to extensive and daunting heterogeneity. This heterogeneity makes it a significant challenge in mapping and identifying the specific genes that influence alcohol use disorders. Genetic linkage and (candidate gene) association studies have been used now for decades to map and characterize genomic loci and genes that underlie the genetic vulnerability to alcohol use disorders. These approaches have been moderately successful in identifying several genes that contribute to the complexity of alcohol use disorders. Recently, genome-wide association studies have become one of the major tools for identifying genes for alcohol use disorders by examining correlations between millions of common single-nucleotide polymorphisms with diagnosis status. Genome-wide association studies are just beginning to uncover novel biology; however, the functional significance of results remains a matter of extensive debate and uncertainty. In this review, we present a select group of genome-wide association studies of alcohol dependence, as one example of a way to generate functional hypotheses, within the addiction cycle framework. This analysis may provide novel directions for validating the functional significance of alcohol dependence candidate genes. This article is part of the Special Issue entitled "Alcoholism".

Dendroecological studies of historical tree recruitment patterns suggest mixed‐severity fire effects are common in Douglas‐fir/western hemlock forests of the Pacific Northwest (PNW), USA, but empirical studies linking observed fire severity to tree regeneration response are needed to expand our understanding into the functional role of fire in this forest type. Recent increases in mixed‐severity fires offered this opportunity, so we quantified the abundance, spatial distribution, species richness, and community composition of regenerating trees across a mixed‐severity fire gradient (unburned–high‐severity fire) 10 and 22 yr post‐fire, and use our results to inform a discussion of fire's functional role in western Oregon Cascades Douglas‐fir forests. Regeneration abundance was unimodal across the fire severity gradient such that the greatest mean abundance followed moderate‐severity fire (25–75% basal area mortality). Similarly, the greatest number of species was present within the most 25‐m2 regeneration quadrants (most extensive distribution) following moderate‐severity fire, relative to any other fire severity class. On average, species richness also exhibited a unimodal distribution across the severity gradient, increasing by 100% in stands that experienced moderate‐severity fire relative to unburned forests or following high‐severity fire, as predicted by the Intermediate Disturbance Hypothesis. Several distinct regeneration communities emerged across the fire severity gradient, including early seral tree communities indicative of those observed in initial and relay floristics successional models for this forest type. Most significantly, moderate‐severity fire alters successional trajectories and facilitates the establishment of a more diverse tree regeneration community than observed following low‐ or high‐severity fire. These communities are reflective of the diverse overstory communities commonly encountered throughout this forest type. The emergence of these diverse forests is unlikely to develop or persist in the absence of moderate‐severity fire effects, and may be perpetuated longer by recurring moderate‐severity fire relative to experiencing stand replacing fire. Therefore, moderate‐severity fire may be the most functionally important fire effect in Douglas‐fir forests and should be better represented in successional models and more prominent in ecologically based fire and forest management.