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The structural and dynamical characteristics of isolated molecules are essential, yet obtaining this information is difficult. We demonstrate laser-desorption jet-cooling/ionization-loss stimulated Raman spectroscopy to obtain Raman spectral signatures of nonvolatile molecules in the gas phase. The vibrational features of a test substance, the most abundant conformer of tryptamine, are compared and found to match those resulting from the scaled harmonic Raman spectrum obtained by density functional theory calculations. The vibrational signatures serve to identify the most prominent gauche conformer and evaluate its predicted electronic structure. These findings, together with noncovalent interaction (NCI) analysis, provide new insights into electron densities and reduced density gradients, assessing the hydrogen bonds (N-H···π and C-H···H-C) and interplay between attractive and repulsive NCIs affecting the structure. This approach accesses vibrational signatures of isolated nonvolatile molecules by tabletop lasers at uniform resolution and in a broad frequency range, promising great benefit to future studies.

Indigo is a blue dye molecule that has been used since antiquity, although it is better known today for its use in blue jeans. Indigo has previously been shown to exhibit remarkable photostability due to fast excited state dynamics mediated by an excited state intramolecular proton transfer. Study of this process is complicated by the fact that the photophysics of indigo is very sensitive to the environment. In order to disentangle the intrinsic photodynamics of indigo from the effects contributed by the environment, we studied indigo in a molecular beam using resonance enhanced multiphoton ionization. We obtained excited state lifetimes of individual vibronic bands with pump-probe spectroscopy ranging from 60 ps to 24 ns. We have mapped a barrier to relaxation at about 700 cm−1, beyond which fast excited state dynamics dominate. Below this barrier two decay processes compete and mode-specific relaxation occurs with certain vibronic bands near the origin relaxing faster than others, or exhibiting different partitioning between the two relaxation channels. Computational studies at the ADC(2)/MP2/cc-pVDZ level indicate that two low-barrier reaction paths exist in the S1 state of indigo, one corresponding to proton transfer, the other to hydrogen transfer. In both cases the charge distribution changes drastically upon de-excitation. These data provide a sensitive probe of the potential energy landscape, responsible for the response to absorption of light. The results may help in understanding the photostability that preserves the blue color of indigo dyes.

The response of DNA and RNA bases to ultraviolet (UV) radiation has been receiving increasing attention for a number of important reasons: (i) the selection of the building blocks of life on an early earth may have been mediated by UV photochemistry, (ii) radiative damage of DNA depends critically on its photochemical properties, and (iii) the processes involved are quite general and play a role in more biomolecules as well as in other compounds. A growing number of groups worldwide have been studying the photochemistry of nucleobases and their derivatives. Here we focus on gas phase studies, which (i) reveal intrinsic properties distinct from effects from the molecular environment, (ii) allow for the most detailed comparison with the highest levels of computational theory, and (iii) provide isomeric selectivity. From the work so far a picture is emerging of rapid decay pathways following UV excitation. The main understanding, which is now well established, is that canonical nucleobases, when absorbing UV radiation, tend to eliminate the resulting electronic excitation by internal conversion (IC) to the electronic ground state in picoseconds or less. The availability of this rapid "safe" de-excitation pathway turns out to depend exquisitely on molecular structure. The canonical DNA and RNA bases are generally short-lived in the excited state, and thus UV protected. Many closely related compounds are longer lived, and thus more prone to other, potentially harmful, photochemical processes. It is this structure dependence that suggests a mechanism for the chemical selection of the building blocks of life on an early earth. However, the picture is far from complete and many new questions now arise.

Interstellar carbon has been detected in both gas-phase molecules and solid particles. The goal of this study is to identify the link between these two phases of cosmic carbon. Here we report preliminary results on the low temperature formation of carbonaceous dust grains from gas-phase aromatic hydrocarbon precursors. This is done using the supersonic expansion of an argon jet seeded with aromatic molecules and exposed to an electrical discharge. We report experimental evidence of efficient carbon dust condensation from aromatic molecules including benzene and naphthalene. The molecular content of the solid grains is probed with laser desorption mass spectrometry. The mass spectra reveal a rich molecular composition including fragments of the parent molecule but also growth into larger molecular species.

Photophysical investigations of the canonical nucleobases that make up DNA and RNA during the past 15 years have revealed that excited states formed by the absorption of UV radiation decay with subpicosecond lifetimes (i.e.,10(-12) s). Ultrashort lifetimes are a general property of absorbing sunscreen molecules, suggesting that the nucleobases are molecular survivors of a harsh UV environment. Encoding the genome using photostable building blocks is an elegant solution to the threat of photochemical damage. Ultrafast excited-state deactivation strongly supports the hypothesis that UV radiation played a major role in shaping molecular inventories on the early Earth before the emergence of life and the subsequent development of a protective ozone shield. Here, we review the general physical and chemical principles that underlie the photostability, or "UV hardiness", of modern nucleic acids and discuss the possible implications of these findings for prebiotic chemical evolution. In RNA and DNA strands, much longer-lived excited states are observed, which at first glance appear to increase the risk of photochemistry. It is proposed that the dramatically different photoproperties that emerge from assemblies of photostable building blocks may explain the transition from a world of molecular survival to a world in which energy-rich excited electronic states were eventually tamed for biological purposes such as energy transduction, signaling, and repair of the genetic machinery.

We present resonant two-photon ionization (R2PI) spectra of isocytosine (isoC) and pump-probe results on two of its tautomers. IsoC is one of a handful of alternative bases that have been proposed in scenarios of prebiotic chemistry. It is structurally similar to both cytosine (C) and guanine (G). We compare the excited-state dynamics with the Watson-Crick (WC) C and G tautomeric forms. These results suggest that the excited-state dynamics of WC form of G may primarily depend on the heterocyclic substructure of the pyrimidine moiety, which is chemically identical to isoC. For WC isoC we find a single excited-state decay with a rate of ∼1010 s-1, while the enol form has multiple decay rates, the fastest of which is 7 times slower than for WC isoC. The excited-state dynamics of isoC exhibits striking similarities with that of G, more so than with the photodynamics of C.

Here we present the excited state dynamics of jet-cooled 6-thioguanine (6-TG), using resonance-enhanced multiphoton ionization (REMPI), IR-UV double resonance spectroscopy, and pump-probe spectroscopy in the nanosecond and picosecond time domains. We report data on two thiol tautomers, which appear to have different excited state dynamics. These decay to a dark state, possibly a triplet state, with rates depending on tautomer form and on excitation wavelength, with the fastest rate on the order of 1010 s-1. We also compare 6-TG with 9-enolguanine, for which we observed decay to a dark state with a 2 orders of magnitude smaller rate. At increased excitation energy (∼+500 cm-1) an additional pathway appears for the predominant thiol tautomer. Moreover, the excited state dynamics for 6-TG thiols is different from that recently predicted for thiones.

Resonance enhanced multiphoton ionization spectroscopy (REMPI) generates simultaneous vibronic spectroscopy and fragment free mass spectrometry to identify molecules within a complex matrix. We combined laser desorption with REMPI spectroscopy to study organic residues within pottery sherds from Maya vessels (600-900 CE) and Mississippian vessels (1100-1200 CE), successfully detecting three molecular markers, caffeine, theobromine, and theophylline, associated with the use of cacao. This analytical approach provides a high molecular specificity, based on both wavelength and mass identification. At the same time, the high detection limit allows for direct laser desorption from sherd scrapings, avoiding the need for extracting organic constituents from the sherd matrix.

The free-energy surface (FES) of glycyl-phenylalanyl-alanine (GFA) tripeptide was explored by molecular dynamics (MD) simulations in combination with high-level correlated ab initio quantum chemical calculations and metadynamics. Both the MD and metadynamics employed the tight-binding DFT-D method instead of the AMBER force field, which yielded inaccurate results. We classified the minima localised in the FESs as follows: a) the backbone-conformational arrangement; and b) the existence of a COOH...OC intramolecular H-bond (families CO(2)H(free) and CO(2)H(bonded)). Comparison with experimental results showed that the most stable minima in the FES correspond to the experimentally observed structures. Remarkably, however, we did not observe experimentally the CO(2)H(bonded) family (also predicted by metadynamics), although its stability is comparable to that of the CO(2)H(free) structures. This fact was explained by the former's short excited-state lifetime. We also carried out ab initio calculations using DFT-D and the M06-2X functional. The importance of the dispersion energy in stabilising peptide conformers is well reflected by our pioneer analysis using the DFT-SAPT method to explore the nature of the backbone/side-chain interactions.

We present the mid-IR (400-1800 cm(-1)) spectra of 9-ethyl guanine, guanosine, and 2-deoxyguanosine measured by IR-UV double-resonance spectroscopy. We compare the recorded mid-IR spectra with the spectra of the most stable structures obtained from RI-MP2 and RI-DFT-D calculations. The results confirm the enol form for all structures and demonstrate the efficacy of a new approach to DFT calculations that includes dispersion interactions.

Gas-phase spectroscopy lends itself ideally to the study of isolated molecules and provides important data for comparison with theory. In recent years, we have seen enormous progress in the study of biomolecular building blocks in the gas phase. The motivation for such work is threefold: (a) It is important to distinguish between intrinsic molecular properties and properties that result from the biological environment. (b) Gas-phase spectroscopy of clusters provides insights into fundamental interactions and into microsolvation. (c) Gas-phase data support quantum-chemical calculations. This review focuses on the current status of (poly)amino acids and DNA bases. Recent results help elucidate structure and hydrogen-bonded interactions, as well as showcase a successful interplay between theory and experiment.

We report mid-infrared spectra and potential energy surfaces of four anionic, 2'-deoxynucleotide-5'-monophosphates (dNMPs) and the ionic DNA pairs [dGMP-dCMP-H](1-), [dAMP-dTMP-H](1-) with a total charge of the complex equal to -1. We recorded IR action Spectra by resonant IR multiple-photon dissociation (IRMPD) using the FELIX free electron laser. The potential energy surface study employed an on-the-fly molecular dynamics quenching method (MD/Q), using a semiempirical AM1 method, followed by an optimization of the most stable structures using density functional theory. By employing infrared multiple-photon dissociation (IRMPD) spectroscopy in combination with high-level computational methods, we aim at a better understanding of the hydrogen bonding competition between the phosphate, moieties and the nucleobases. We find that, unlike in multimer double stranded DNA structures, the hydrogen bonds in these isolated nucleotide pairs are predominantly formed between the phosphate groups. This intermolecular interaction appears to exceed the stabilization energy resulting from base pairing and directs the overall cluster structure and alignment.

IR spectroscopy of nucleobases in the gas phase reflects simultaneous advances in both experimental and computational techniques. Important properties, such as excited state dynamics, depend in subtle ways on structure variations, which can be followed by their infrared signatures. Isomer specific spectroscopy is a particularly powerful tool for studying the effects of nucleobase tautomeric form and base pair hydrogen-bonding patterns.

IR–UV double resonance spectroscopy of the laser-desorbed, jet-cooled pentapeptide FDASV shows only one type of conformer in the gas phase. Comparison with computations at the B3LYP/6-31G ∗∗ level suggests formation of an α -turn in the absence of solvent stabilization.

We present the resonant two-photon ionization (R2PI) spectra as well as the UV–UV and IR–UV double resonance spectra for the cyclic dipeptide Phe-Ser. The R2PI spectrum shows five strong transitions in the region of 37 500–37 900 cm−1. By performing UV–UV double resonance spectroscopy, we distinguished 5 different conformers. For each of these conformers, the origin is the most intense transition. In addition, we performed IR–UV double resonance measurements in the region 3200–3800 cm−1 to analyse the NH and OH modes of each conformer. We compared the measured IR spectra to frequencies from ab initio calculations to assign each conformational structure. We found two structures in which the hydroxyl group of the serine residue forms a strong hydrogen bond with the carboxyl group of the same residue. One structure shows only a weak hydrogen bond and for the remaining two structures, the hydroxyl group is ‘free’.

Prebiotic chemistry presumably took place before formation of an oxygen-rich atmosphere and thus under conditions of intense short wavelength UV irradiation. Therefore, the UV photochemical stability of the molecular building blocks of life may have been an important selective factor in determining the eventual chemical makeup of critical biomolecules. To investigate the role of UV irradiation in base-pairing we have studied guanine (G) and cytosine (C) base pairs in the absence of the RNA backbone. We distinguished base-pair structures by IR–UV hole-burning spectroscopy as well as by high-level correlated ab initio calculations. The Watson–Crick structure exhibits broad UV absorption, in stark contrast to other GC structures and other base-pair structures. This broad absorption may be explained by a rapid internal conversion that makes this specific base pair arrangement uniquely photochemically stable.

Editorial for the themed issue on ‘Prebiotic Chemistry and the Molecular Origins of Life’. The dictum Omne vivum ex vivo is misleading: life must have arisen from non-living matter.

Based on an infrared spectrum in an atlas, and on a Raman spectrum that we acquired ourselves, we have made a frequency assignment for the vibrational modes of tyrosine. This assignment was aided by the results of a GAUSSIAN frequency calculation that we performed at the Hartree‐Fock level, using the 3-21G basis set. We have made a vibronic assignment of the bands in a jet-cooled LD-R2PI spectrum that we obtained for tyrosine, using the aforementioned ground-state analysis as a guide. By UV hole burning, we have verified which of the low-frequency R2PI peaks are origins, assigning the others as torsions. We have assigned the various origin bands, with their associated bands to higher energy, to configurations in which the amino acid backbone is either gauche or anti to the ring. C � 2002 Elsevier Science (USA)

In this paper we present detailed R2PI spectra with IR–UV and UV–UV double resonance measurements of the guanine dimer (GG) and its methylated derivatives. We show that there are two isomers of GG in the investigated wavelength range from 32565 to 33600 cm−1. We were able to assign the two isomers to specific structures based on comparison of the intermolecular vibronic patterns of the dimers with and without methylation, on analysis of the IR spectra in the range of the OH and NH stretching vibrations and on comparison with ab initio calculated dimer stabilities and vibrational frequencies. In both structures both guanine moieties are in the keto tautomeric form, even though the enol tautomers are also present in the beam. One isomer exhibits nonsymmetric hydrogen bonding with HNH⋯N, NH⋯N and CO⋯HNH interactions (K9K7-2). The other isomer has a symmetrical hydrogen bond arrangement with CO⋯NH/NH⋯OC bonding (K9K7-1). The most stable guanine dimer forms CO⋯NH/NH⋯OC hydrogen bonds and has C2h symmetry (K9K9-1). Due to its strong exciton splitting the allowed S0–S2 transition is outside the investigated spectral range. We did not observe any keto–enol or enol–enol dimers in the investigated wavelength region. The calculations predict these dimers to be considerably less stable.

Electronic spectroscopy of DNA bases in the gas phase provides detailed information about the electronic excitation, which places the molecule in the Franck-Condon region in the excited state and thus prepares the starting conditions for excited-state dynamics. Double resonance or hole-burning spectroscopy in the gas phase can provide such information with isomer specificity, probing the starting potential energy landscape as a function of tautomeric form, isomeric structure, or hydrogen bonded or stacked cluster structure. Action spectroscopy, such REMPI, can be affected by excited-state lifetimes.

IR spectroscopy of nucleobases in the gas phase reflects simultaneous advances in both experimental and computational techniques. Important properties, such as excited state dynamics, depend in subtle ways on structure variations, which can be followed by their infrared signatures. Isomer specific spectroscopy is a particularly powerful tool for studying the effects of nucleobase tautomeric form and base pair hydrogen-bonding patterns.

Electronic spectroscopy of DNA bases in the gas phase provides detailed information about the electronic excitation, which places the molecule in the Franck-Condon region in the excited state and thus prepares the starting conditions for excited-state dynamics. Double resonance or hole-burning spectroscopy in the gas phase can provide such information with isomer specificity, probing the starting potential energy landscape as a function of tautomeric form, isomeric structure, or hydrogen bonded or stacked cluster structure. Action spectroscopy, such REMPI, can be affected by excited-state lifetimes.

We present R2PI spectra of a series of purine nucleobases, nucleosides, and related derivatives, including adenine, guanine, guanosine, 2-aminopurine, 2,6-diaminopurine, 9-ethyladenine, and 9-methy...

We report resonance-enhanced multiphoton ionization (REMPI) spectroscopy of laser-desorbed, jet-cooled dipeptides, containing either tyrosine or phenylalanine as an aromatic chromophore (C). The single amino acids have multiple origins that we interpret as arising from two types of conformations, with the carboxyl group either anti or gauche with respect to the ring. Spectra for dipeptides of the form X−C, for example, Ala-Tyr, are similar to those of the corresponding single amino acid. On the other hand, spectra for dipeptides of the form C−X, for example, Tyr-Ala, show significant changes in the peaks, which we associate with gauche conformations. This observation can be understood in terms of an interaction between the carboxyl terminus and the ring, associated with the molecule assuming a folded conformation.

Photofrin (porfimer sodium) is a porphyrin derivative used in the treatment of a variety of cancers by photodynamic therapy. This oligomer complex and a variety of porphyrin monomers, dimers and trimers were analyzed with five different mass spectral ionization techniques: fast atom bombardment, UV and IR matrix-assisted laser desorption/ionization, electrospray ionization, and laser desorption/jet-cooling photoionization. All five approaches resulted in very similar oligomer distributions with an average oligomer length of 2.7 +/- 0.1 porphyrin units. In addition to the Photofrin analysis, this study provides a side-by-side comparison of the spectra for the five different mass spectrometric techniques.

Erbium ions encapsulated in the metallofullerene Er2@C82 emit near infrared fluorescence about 1.5 µm, typical for 4I13/2 → 4I15/2 transitions of Er3+. The similarity of spectra measured in glassy and polycrystalline media at 1.6 K, and the very narrow inhomogeneous linewidth (

In his book The Double Helix, James Watson describes an early proposal for DNA structure in which equal bases pair with each other. He writes: ‘‘My scheme was torn to shreds the following noon. Against me was the awkward chemical fact that I had chosen the wrong tautomeric forms for guanine and thymine.’’ This fact was pointed out to him by the American crystallographer Jerry Donahue who ‘‘ . . . protested that the idea would not work. The tautomeric forms I had copied out of Davidson’s book were, in Jerry’s opinion, incorrectly assigned. My immediate retort that several other texts also pictured guanine and thymine in the enol form cut no ice with Jerry. Happily he let out that for years organic chemists have been arbitrarily favoring particular tautomeric forms over the alternatives on only the flimsiest of grounds’’ [1]. Without the correct keto form of these bases, Watson and Crick could not have arrived at their successful structure of DNA. In fact, for each of the bases, the keto tautomer is the form normally occurring in DNA. The rare imino and enol forms can lead to alternate base-pair combinations and thus cause mutations in replication. This type of mutation is called a tautomeric shift [2, 3]. Possible mismatches include iminoC–A, enolT–G, C–iminoA, and T–enolG. Tautomerization can occur in DNA by single or double proton transfer. In solution equilibrium, generally the keto form dominates, complicating efforts to study the properties of the individual forms. One approach to studying tautomeric properties is double-resonant gas-phase spectroscopy, as this technique offers isomeric selectivity. This chapter summarizes the results from such investigations.

We have used a combination of laser desorption, separate multiphoton ionization, and mass spectrometry to characterize films of perfluorinated polyethers. Photoionization is achieved through end group chromophores, which are either present in the polymer or chemically attached. The technique provides parent molecular weight distributions without fragmentation. Examples are given of end group analysis, wavelength dependent spectroscopy, analysis of repeat unit distributions in copolymers, and polymer degradation analysis.

Perfluorinated polyethers of the type R a (OCF 2 CF 2 CF 2 ) n F, where R a is the end group C 6 H 6 HCH 2 CH 2 O(CO)CF 2 CF − 2 -, were laser-vaporized and entrained in a pulsed jet expansion. Two photon ionization of the jet-cooled polymers via the phenoxy chromophore was combined with time of flight (TOF) mass spectrometry. Mass spectra were obtained for polymer distributions extending to 7000 Da, with minimal fragmentation. Under the appropriate expansion and desorption conditions parent masses of van der Waals dimers of these polymers were also observed. By scanning the ionization laser and monitoring particular mass-to-charge ratios, resonance-enhanced two photon ionization (R2PI) spectra were obtained for the jet-cooled polymers and their dimers near the electronic origin. Polymers with the two end groups, present as an impurity in the samples, were detected exclusively in an internally dimerized form. In both the internal and external cases, the dimerization occurs only at the phenoxy chromophore. The R2PI spectra of a series of model compounds were measured and used to characterize the evolution of the spectra from phenol toward the polymer. The model compound spectra revealed the role of multiple conformations and molecular size in the polymer spectra, which are ultimately broadened by low frequency motions of multiple conformers. The results are discussed relative to teh general problem of the photoionization of large molecules.

We report the structure of clusters of 2,4-diaminopyrimidine with 3,7-dimethylxanthine (theobromine) in the gas phase determined by IR-UV double resonance spectroscopy in both the near-IR and mid-IR regions in combination with ab initio computations. These clusters represent potential alternate nucleobase pairs, geometrically equivalent to guanine-cytosine. We have found the four lowest energy structures, which include the Watson-Crick base pairing motif. This Watson-Crick structure has not been observed by resonant two-photon ionization (R2PI) in the gas phase for the canonical DNA base pairs.

We report double-resonant IR/UV ion-dip spectroscopy of neutral gramicidin peptides in the gas phase. The IR spectra of gramicidin A and C, recorded in both the 1000 cm(-1) to 1800 cm(-1) and the 2700 to 3750 cm(-1) region, allow structural analysis. By studying this broad IR range, various local intramolecular interactions are probed, and complementary IR modes can be accessed. Ab initio quantum chemical calculations are used to support the interpretation of the experimental IR spectra. The comparison of the calculated frequencies with the experimental IR spectrum probed via the strong infrared absorptions of all the amide groups (NH stretch, C=O stretch and NH bend), shows evidence for a helical structure in the gas phase, which is similar to that in the condensed phase. Additionally, we show that to improve the spectral resolution when studying large neutral molecular structures of the size of gramicidin, the use of heavier carrier gas could be advantageous.

We investigated the variation in conformation for the amino acid tyrosine (Y), alone and in the small peptides tyrosine-glycine (YG) and tyrosine-glycine-glycine (YGG), in the gas phase by using UV-UV and IR-UV double resonance spectroscopy and density functional theory calculations. For tyrosine we found seven different conformations, for YG we found four different conformations, and for YGG we found three different conformations. As the peptides get larger, we observe fewer stable conformers, despite the increasing complexity and number of degrees of freedom. We find structural trends similar to those in phenylalanine-glycine-glycine (FGG) and tryptophan-glycine-glycine (WGG); however, the effect of dispersive forces in FGG for stabilizing a folded structure is replaced by that of hydrogen bonding in YGG.

EXAFS experiments on a fullerene sample containing both YC82 and Y2C82 are reported, performed both at 10 K and at room temperature, to probe the structural environment of the yttrium atoms. The results are similar at both temperatures. The data can be fit with a model with two shells of 6 carbon atoms each, at 2.4 and 2.9 A, respectively. This result supports the hypothesis that the metal atoms are trapped inside the fullerene cage, consistent with recent calculations on possible metallofullerene structures.

a plume of metal ions. The metal ions attach to the desorbed PFPE molecules creating cation complexes. Separation of the desorption and cationization processes allowed independent optimization of the two laser/material interactions. By use of this technique, full parent mass distributions of various PFPE compounds were obtained. Other benefits of this method of cationization are that surface and sample preparation are minimized. Furthermore, samples do not contain dopants for cationization allowing the study of their intrinsic chemistry in situ. Various experiments were performed to characterize the cationization process and provide insight into the dynamics of the ion-molecule reaction that forms these complexes. In addition, applications of this technique will be discussed. These include measurements of molecular weight distributions and average molecular weights of PFPE samples as well as purity analysis of those compounds. Finally, the use of this technique to study photochemistry of PFPEs will be presented.

Fullerenes containing metal atoms and clusters can be formed by the arc-vaporization method. The electronic structure of these metallofullerenes can be probed using magnetic resonance techniques. Electron paramagnetic resonance (EPR) spectra of LaC82, YC82, ScC82 and Sc3C82 have been obtained. Metallofullerenes containing a single metal atom (MC82 with M = La, Y, or Sc), have small hyperfine couplings and g-values close to 2, implying that they can be described as + 3 metal cations within — 3 fullerene radical anion cages. In the La and Y cases, additional EPR active MC82 species have been found. The EPR spectrum of Sc3C82 shows that the metal atoms are equivalent, suggesting that they may form a triangular molecule. No EPR spectrum is found for Y2C82 or for Sc2C2n species (with 2n = 82,84,86), suggesting that they are diamagnetic. Sc NMR spectra of a solution containing Sc2C2n species have been obtained which confirm the diamagnetism of the discandium metallofullerenes.

A combined experimental and theoretical study on the excited-state behavior of the uracil analogues, 5-OH-Ura and 5-NH2-Ura is reported. Two-photon ionization and IR/UV double-resonant spectra show that there is only one tautomer present for each with an excited state lifetime of 1.8 ns for 5-OH-Ura and 12.0 ns for 5-NH2-Ura as determined from pump-probe experiments. The nature of the excited states of both species is investigated by means of multi-reference ab initio methods. Vertical excitation energies, excited state minima, minima on the crossing seam and reaction paths towards them are determined. Sizeable barriers on these paths are found that provide an explanation for the lifetimes of several nanoseconds observed in the experiment. Fil: Nachtigallová, Dana. Institute of Organic Chemistry and Biochemistry of the Academy of Science of the Czech Republic; República Checa Fil: Lischka, Hans. Universidad de Viena; Austria Fil: Szymczak, Jaroslaw J.. Universidad de Viena; Austria Fil: Barbatti, Mario. Universidad de Viena; Austria Fil: Hobza, Pavel. Institute of Organic Chemistry and Biochemistry of the Academy of Science of the Czech Republic; República Checa Fil: Gengeliczki, Zsolt. University of Stanford; Estados Unidos Fil: Pino, Gustavo Ariel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto de Investigaciones en Físico-química de Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Instituto de Investigaciones en Físico-química de Córdoba; Argentina Fil: Callahan, Michael P.. Goddard Space Flight Center; Estados Unidos Fil: De Vries, Mattanjah S.. California State University; Estados Unidos

Double resonance spectroscopy of clusters of guanine with aspartic acid reveals geometries similar to patterns exhibited in DNA base pairs. In the spectral region of 32,800 cm(-1) to 35,500 cm(-1) we observe five isomers of guanine-aspartic acid clusters and assign their structures based on IR-UV hole-burning spectra and wave function theory calculations at the MP2/cc-pVDZ and MP2/cc-pVTZ levels. The calculations employed both harmonic and one-dimensional scan anharmonic approximations. Three of the isomers are similar, assigned to structures containing three hydrogen bonds and 9-enolguanine. We assign the fourth isomer to a structure containing a 9-keto tautomer of guanine and forming a triply bonded structure similar to a base pairing interaction. The fifth isomer dissociates with proton transfer upon excitation or ionization. This is the first set of experiments and high-level ab initio calculations of the isolated, microscopic interactions of an amino acid and a nucleobase, the building blocks of nucleic acids and proteins.

To explore the excited state dynamics of pyrimidine derivatives, we performed a combined experimental and theoretical study. We present resonant two-photon ionization (R2PI) and IR-UV double resonance spectra of 2,4-diaminopyrimidine and 2,6-diaminopurine seeded in a supersonic jet by laser desorption. For 2,4-diaminopyrimidine (S(0)--S(1) 34,459 cm(-1)), we observed only the diamino tautomer with an excited state lifetime bracketed between experimental limits of 10 ps and 1 ns. For 2,6-diaminopurine, we observed two tautomers, the 9H- (S(0)--S(1) 34,881 cm(-1)) and 7H- (S(0)--S(1) 32,215 cm(-1)) diamino forms, with excited state lifetimes of 6.3±0.4 ns and 8.7±0.8 ns, respectively. We investigated the nature of the excited state of 2,4-diaminopyrimidine by means of multi-reference ab initio methods. The calculations of stationary points in the ground and excited states, minima on the S(0)/S(1) crossing seam and connecting reaction paths show that several paths with negligible barriers exist, allowing ultrafast radiationless deactivation if excited at energies slightly higher than the band origin. The sub-nanosecond lifetime found experimentally is in good agreement with this finding.

We have studied solid C 60 , measuring the shift of the optical absorption edge with pressure to 35 GPa. In the range of 0-17 t GPa, extrapolation of the absorption edge indicates that metallization should occur by 33 GPa. However, from It to 25 GPa an irreversible transition to a «transparent phase» occurs. Raman scattering of the depressurized sample shows no trace of C 60 , diamond, or graphite, indicating that the transition involves the collapse of the C 60 molecules into a new structure of carbon

Using a beam-gas time-of-flight technique, the XeX* (X = Cl, Br, I) rotational alignment from the reactions of Xe( 3 P 2,0 ) with CH 3 I, CH 2 I 2 , CH 2 Br 2 , CHBr 3 , CBr 4 , CHCl 3 , and CCl 4 are reported. The degree of product alignment varies markedly between these systems, decreasing with collision energy, halogen mass, and number of halogens per molecule. At the lowest collision energies studied, a transition from positive to negative polarization was found for CBr 4 , CHCl 3 , and CCl 4 . The negative polarization corresponds to the preferential alignment of the product rotational angular momentum vector parallel to the relative velocity vector.

An apparatus is been described in which laser desorption, separate laser ionization, mass spectrometry, and microscopy are combined. An UV waveguide laser is focused on a sample, which is mounted on translation stages in vacuum. Desorbed neutral molecules are ionized above the surface by a second laser, and ions are extracted into a reflectron time of flight mass spectrometer. A spatial resolution of 1 μm is demonstrated, with a mass resolution of 2000 and a detection efficiency of 10−4.

Two methods of preparing guanine in the gas phase, thermal vaporization and laser desorption, have been investigated. The guanine generated by each method is entrained in a molecular beam, single-photon ionized with tunable VUV synchrotron radiation, and analyzed using reflectron mass spectrometry. The recorded photoionization efficiency (PIE) curves show a dramatic difference for experiments performed via thermal vaporization compared to that with laser desorption. The calculated vertical and adiabatic ionization energies for the eight lowest-lying tautomers of guanine suggest that the experimental observations arise from different tautomers being populated in the two different experimental methods.

We report vibrational Raman and infrared spectra for chemically separated C 60 and C 70 fullerenes. Thin film samples were prepared by subliming the chromatographically separated species onto appropriate substrates. The C 60 Raman spectrum shows eight clear lines and two weaker ones. If C 60 in fact that has the proposed buckminsterfullerene structure (as is strongly indicated by recent experiments), the present Raman measurements together with the four observed IR frequencies give a complete set of Raman and infrared active fundamental frequencies for this molecule. A comparison of this set with the calculated spectrum for buckminsterfullerene shows satisfactory agreement.

We have used two-color resonant two-photon ionization (2C-R2PI) mass spectrometry to discriminate between isomers of polycyclic aromatic hydrocarbons in the Murchison meteorite. We measured the 2C-R2PI spectra of chrysene and triphenylene seeded in a supersonic jet by laser desorption. Since each isomer differs in its R2PI spectrum, we can distinguish between isomers using wavelength dependent ionization and mass spectrometry. We found both chrysene and triphenylene in sublimates from carbonaceous residue obtained by acid demineralization of the Murchison meteorite. Their R2PI mass spectra show only the molecular ion, even though these samples contain a complex inventory of organic molecules.

A method for analyzing phenolic acids and polyphenols by means of resonant two-photon ionization (R2PI) mass spectrometry coupled with laser desorption and supersonic jet cooling is described. The R2PI spectra of gallic acid, 3-O-methylgallic acid, protocatechuic acid, syringic acid, vanillic acid, and trans-resveratrol are vibronically resolved and distinct to allow for unambiguous identification. For vanillic acid, its R2PI spectrum can be separated into contributions of two rotational isomers based on UV-UV and IR-UV double-resonance spectroscopy. Since R2PI spectra display sharp and well-resolved peaks, the laser wavelength can be tuned for selective ionization of targeted molecules. The mass spectrum recorded under jet-cooled conditions and at the resonant wavelength displays only the molecular ion peak with no fragmentation or background peaks. Picogram sensitivity and linear response over a nanogram range allows trace quantitative measurements of target molecules in complex matrixes. These techniques were applied to detect syringic acid in a model archaeological wine vessel.