13 results on '"Matryba P"'
Search Results
2. Whole-body clearing, staining and screening of calcium deposits in the mdx mouse model of Duchenne muscular dystrophy
- Author
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Bozycki, Lukasz, Łukasiewicz, Kacper, Matryba, Paweł, and Pikula, Slawomir
- Published
- 2018
- Full Text
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3. Total Absence of Dystrophin Expression Exacerbates Ectopic Myofiber Calcification and Fibrosis and Alters Macrophage Infiltration Patterns
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Young, Christopher N.J., Gosselin, Maxime R.F., Rumney, Robin, Oksiejuk, Aleksandra, Chira, Natalia, Bozycki, Lukasz, Matryba, Paweł, Łukasiewicz, Kacper, Kao, Alex P., Dunlop, Joseph, Robson, Samuel C., Zabłocki, Krzysztof, and Górecki, Dariusz C.
- Abstract
Duchenne muscular dystrophy (DMD) causes severe disability and death of young men because of progressive muscle degeneration aggravated by sterile inflammation. DMD is also associated with cognitive and bone-function impairments. This complex phenotype results from the cumulative loss of a spectrum of dystrophin isoforms expressed from the largest human gene. Although there is evidence for the loss of shorter isoforms having impact in the central nervous system, their role in muscle is unclear. We found that at 8 weeks, the active phase of pathology in dystrophic mice, dystrophin-null mice (mdxβgeo) presented with a mildly exacerbated phenotype but without an earlier onset, increased serum creatine kinase levels, or decreased muscle strength. However, at 12 months, mdxβgeodiaphragm strength was lower, whereas fibrosis increased, compared with mdx. The most striking features of the dystrophin-null phenotype were increased ectopic myofiber calcification and altered macrophage infiltration patterns, particularly the close association of macrophages with calcified fibers. Ectopic calcification had the same temporal pattern of presentation and resolution in mdxβgeoand mdxmuscles, despite significant intensity differences across muscle groups. Comparison of the rare dystrophin-null patients against those with mutations affecting full-length dystrophins may provide mechanistic insights for developing more effective treatments for DMD.
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- 2020
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4. Shrinkage-mediated imaging of entire organs and organisms using uDISCO
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Pan, Chenchen, Cai, Ruiyao, Quacquarelli, Francesca Paola, Ghasemigharagoz, Alireza, Lourbopoulos, Athanasios, Matryba, Paweł, Plesnila, Nikolaus, Dichgans, Martin, Hellal, Farida, and Ertürk, Ali
- Abstract
Recent tissue-clearing approaches have become important alternatives to standard histology approaches. However, light scattering in thick tissues and the size restrictions on samples that can be imaged with standard light-sheet microscopy pose limitations for analyzing large samples such as an entire rodent body. We developed 'ultimate DISCO' (uDISCO) clearing to overcome these limitations in volumetric imaging. uDISCO preserves fluorescent proteins over months and renders intact organs and rodent bodies transparent while reducing their size up to 65%. We used uDISCO to image neuronal connections and vasculature from head to toe over 7 cm and to perform unbiased screening of transplanted stem cells within the entire body of adult mice. uDISCO is compatible with diverse labeling methods and archival human tissue, and it can readily be used in various biomedical applications to study organization of large organ systems throughout entire organisms.
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- 2016
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5. Inhibition of arginase modulates T-cell response in the tumor microenvironment of lung carcinoma
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Sosnowska, Anna, Chlebowska-Tuz, Justyna, Matryba, Pawel, Pilch, Zofia, Greig, Alan, Wolny, Artur, Grzywa, Tomasz M., Rydzynska, Zuzanna, Sokolowska, Olga, Rygiel, Tomasz P., Grzybowski, Marcin, Stanczak, Paulina, Blaszczyk, Roman, Nowis, Dominika, and Golab, Jakub
- Abstract
ABSTRACTImmunotherapy has demonstrated significant activity in a broad range of cancer types, but still the majority of patients receiving it do not maintain durable therapeutic responses. Amino acid metabolism has been proposed to be involved in the regulation of immune response. Here, we investigated in detail the role of arginase 1 (Arg1) in the modulation of antitumor immune response against poorly immunogenic Lewis lung carcinoma. We observed that tumor progression is associated with an incremental increase in the number of Arg1+myeloid cells that accumulate in the tumor microenvironment and cause systemic depletion of ʟ-arginine. In advanced tumors, the systemic concentrations of ʟ-arginine are decreased to levels that impair the proliferation of antigen-specific T-cells. Systemic or myeloid-specific Arg1 deletion improves antigen-induced proliferation of adoptively transferred T-cells and leads to inhibition of tumor growth. Arginase inhibitor was demonstrated to modestly inhibit tumor growth when used alone, and to potentiate antitumor effects of anti-PD-1 monoclonal antibodies and STING agonist. The effectiveness of the combination immunotherapy was insufficient to induce complete antitumor responses, but was significantly better than treatment with the checkpoint inhibitor alone. Together, these results indicate that arginase inhibition alone is of modest therapeutic benefit in poorly immunogenic tumors; however, in combination with other treatment strategies it may significantly improve survival outcomes.
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- 2021
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6. The Influence of Time of Day of Vaccination with BNT162b2 on the Adverse Drug Reactions and Efficacy of Humoral Response against SARS-CoV-2 in an Observational Study of Young Adults.
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Matryba P, Gawalski K, Ciesielska I, Horvath A, Bartoszewicz Z, Sienko J, Ambroziak U, Malesa-Tarasiuk K, Staniszewska A, Golab J, and Krenke R
- Abstract
An increasing body of evidence from both academic and clinical studies shows that time-of-day exposure to antigens might significantly alter and modulate the development of adaptive immune responses. Considering the immense impact of the COVID-19 pandemic on global health and the diminished efficacy of vaccination in selected populations, such as older and immunocompromised patients, it is critical to search for the most optimal conditions for mounting immune responses against SARS-CoV-2. Hence, we conducted an observational study on 435 healthy young adults vaccinated with two doses of BNT162b2 (Pfizer-BioNTech) vaccine to determine whether time-of-day of vaccination influences either the magnitude of humoral response or number of adverse drug reactions (ADR) being reported. We found no significant differences between morning and afternoon vaccination in terms of both titers of anti-Spike antibodies and frequency of ADR in the studied population. In addition, our analysis of data on the occurrence of ADR in 1324 subjects demonstrated that the second administration of vaccine in those with previous SARS-CoV-2 infection was associated with lower incidence of ADR. In aggregate, vaccination against COVID-19 with two doses of BNT162b2 mRNA vaccine is presumed to generate an equally efficient anti-Spike humoral response.
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- 2022
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7. Assessing functional status of cardiac lymphatics: From macroscopic imaging to molecular profiling.
- Author
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Jankowska-Steifer E, Ratajska A, Czarnowska E, Badurek I, Matryba P, Niderla-Bielińska J, Ciszek B, and Brakenhielm E
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- Biomarkers metabolism, Extracellular Matrix metabolism, Extracellular Matrix pathology, Glycocalyx metabolism, Glycocalyx pathology, Heart physiopathology, Heart Diseases metabolism, Heart Diseases pathology, Heart Diseases physiopathology, Humans, Lymphatic Diseases metabolism, Lymphatic Diseases pathology, Lymphatic Diseases physiopathology, Lymphatic System metabolism, Lymphatic System pathology, Lymphatic System physiopathology, Myocardium metabolism, Myocardium pathology, Predictive Value of Tests, Prognosis, Cardiac Imaging Techniques, Heart diagnostic imaging, Heart Diseases diagnostic imaging, Lymphatic Diseases diagnostic imaging, Lymphatic System diagnostic imaging, Lymphography, Microscopy
- Abstract
Here we describe various techniques for visualization of the lymphatic vasculature, particularly in the heart. Addressing macro-, microscopic, and molecular levels of lymphatic organization, we give examples of how to explore the roles of specific antigens/markers expressed in lymphatic vessels and their extracellular matrix as structural and functional elements involved in various biological functions of lymphatics. Some obstacles and technical challenges related to lymphatic visualization are also discussed., (Copyright © 2020. Published by Elsevier Inc.)
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- 2021
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8. Can Developments in Tissue Optical Clearing Aid Super-Resolution Microscopy Imaging?
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Matryba P, Łukasiewicz K, Pawłowska M, Tomczuk J, and Gołąb J
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- Animals, Brain diagnostic imaging, Fluorescence, Fluorescent Dyes chemistry, Humans, Image Processing, Computer-Assisted methods, Molecular Probes chemistry, Tissue Fixation methods, Microscopy methods, Optical Imaging methods
- Abstract
The rapid development of super-resolution microscopy (SRM) techniques opens new avenues to examine cell and tissue details at a nanometer scale. Due to compatibility with specific labelling approaches, in vivo imaging and the relative ease of sample preparation, SRM appears to be a valuable alternative to laborious electron microscopy techniques. SRM, however, is not free from drawbacks, with the rapid quenching of the fluorescence signal, sensitivity to spherical aberrations and light scattering that typically limits imaging depth up to few micrometers being the most pronounced ones. Recently presented and robustly optimized sets of tissue optical clearing (TOC) techniques turn biological specimens transparent, which greatly increases the tissue thickness that is available for imaging without loss of resolution. Hence, SRM and TOC are naturally synergistic techniques, and a proper combination of these might promptly reveal the three-dimensional structure of entire organs with nanometer resolution. As such, an effort to introduce large-scale volumetric SRM has already started; in this review, we discuss TOC approaches that might be favorable during the preparation of SRM samples. Thus, special emphasis is put on TOC methods that enhance the preservation of fluorescence intensity, offer the homogenous distribution of molecular probes, and vastly decrease spherical aberrations. Finally, we review examples of studies in which both SRM and TOC were successfully applied to study biological systems.
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- 2021
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9. Tissue clearing-based method for unobstructed three-dimensional imaging of mouse penis with subcellular resolution.
- Author
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Matryba P, Wolny A, Pawłowska M, Sosnowska A, Rydzyńska Z, Jasiński M, Stefaniuk M, and Gołąb J
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- Animals, Fluorescence, Male, Mice, Penis diagnostic imaging, Brain, Imaging, Three-Dimensional
- Abstract
Although mice are widely used to elucidate factors contributing to penile disorders and develop treatment options, quantification of tissue changes upon intervention is either limited to minuscule tissue volume (histology) or acquired with limited spatial resolution (MRI/CT). Thus, imaging method suitable for expeditious acquisition of the entire mouse penis with subcellular resolution is described that relies on both aqueous- (clear, unobstructed brain imaging cocktails and computational analysis) and solvent-based (fluorescence-preserving capability imaging of solvent-cleared organs) tissue optical clearing (TOC). The combined TOC approach allows to image mouse penis innervation and vasculature with unprecedented detail and, for the first time, reveals the three-dimensional structure of murine penis fibrocartilage., (© 2020 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2020
- Full Text
- View/download PDF
10. Myeloid Cell-Derived Arginase in Cancer Immune Response.
- Author
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Grzywa TM, Sosnowska A, Matryba P, Rydzynska Z, Jasinski M, Nowis D, and Golab J
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- Animals, Antineoplastic Agents therapeutic use, Arginase antagonists & inhibitors, Clinical Trials as Topic, Humans, Macrophages immunology, Mice, Myeloid Progenitor Cells metabolism, Neoplasms drug therapy, Arginase immunology, Arginine metabolism, Myeloid Cells enzymology, Neoplasms immunology
- Abstract
Amino acid metabolism is a critical regulator of the immune response, and its modulating becomes a promising approach in various forms of immunotherapy. Insufficient concentrations of essential amino acids restrict T-cells activation and proliferation. However, only arginases, that degrade L-arginine, as well as enzymes that hydrolyze L-tryptophan are substantially increased in cancer. Two arginase isoforms, ARG1 and ARG2, have been found to be present in tumors and their increased activity usually correlates with more advanced disease and worse clinical prognosis. Nearly all types of myeloid cells were reported to produce arginases and the increased numbers of various populations of myeloid-derived suppressor cells and macrophages correlate with inferior clinical outcomes of cancer patients. Here, we describe the role of arginases produced by myeloid cells in regulating various populations of immune cells, discuss molecular mechanisms of immunoregulatory processes involving L-arginine metabolism and outline therapeutic approaches to mitigate the negative effects of arginases on antitumor immune response. Development of potent arginase inhibitors, with improved pharmacokinetic properties, may lead to the elaboration of novel therapeutic strategies based on targeting immunoregulatory pathways controlled by L-arginine degradation., (Copyright © 2020 Grzywa, Sosnowska, Matryba, Rydzynska, Jasinski, Nowis and Golab.)
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- 2020
- Full Text
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11. Systematic Evaluation of Chemically Distinct Tissue Optical Clearing Techniques in Murine Lymph Nodes.
- Author
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Matryba P, Sosnowska A, Wolny A, Bozycki L, Greig A, Grzybowski J, Stefaniuk M, Nowis D, and Gołąb J
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- Animals, Fluorescent Dyes chemistry, Fluorescent Dyes pharmacology, Lymph Nodes immunology, Mice, Microscopy, Fluorescence, Imaging, Three-Dimensional, Lymph Nodes cytology
- Abstract
Activation of adaptive immunity is a complex process coordinated at multiple levels in both time and the three-dimensional context of reactive lymph nodes (LNs). Although microscopy-based visualization of its spatiotemporal dynamics unravels complexities of developing immune response, such approach is highly limited by light-obstructing nature of tissue components. Recently, tissue optical clearing (TOC) techniques were established to bypass this obstacle and now allow to image and quantify the entire murine organs with cellular resolution. However, the spectrum of TOC is represented by wide variety of chemically distinct methods, each having certain advantages and disadvantages that were unsatisfactorily compared for suitability to LNs clearing. In this study, we have systematically tested 13 typical TOC techniques and assessed their impact on a number of critical factors such as LN transparency, imaging depth, change in size, compatibility with proteinaceous fluorophores, immunostaining, H&E staining, and light-sheet fluorescence microscopy. Based on the detailed data specific to TOC process of murine LNs, we provide a reliable reference for most suitable methods in an application-dependent manner., (Copyright © 2020 by The American Association of Immunologists, Inc.)
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- 2020
- Full Text
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12. Optimized perfusion-based CUBIC protocol for the efficient whole-body clearing and imaging of rat organs.
- Author
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Matryba P, Bozycki L, Pawłowska M, Kaczmarek L, and Stefaniuk M
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- Animals, Antibodies metabolism, Coloring Agents pharmacokinetics, Perfusion, Rats, Tissue Distribution, Optical Imaging methods
- Abstract
Whole-organ and whole-body optical tissue clearing methods allowing imaging in 3 dimensions are an area of profound research interest. Originally developed to study nervous tissue, they have been successfully applied to all murine organs, yet clearing and imaging of rat peripheral organs is less advanced. Here, a modification of CUBIC clearing protocol is presented. It provides a rapid and simple approach to clear the entire adult rat organism and thus all organs within as little as 4 days. Upgraded perfusion-based rat CUBIC protocol preserves both anatomical structure of organs and signal from proteinaceous fluorophores, and furthermore is compatible with antibody staining. Finally, it enables also volumetric cells analyses and is tailored for staining of calcium deposits within unsectioned soft tissues., (© 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.)
- Published
- 2018
- Full Text
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13. Light-sheet microscopy imaging of a whole cleared rat brain with Thy1-GFP transgene.
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Stefaniuk M, Gualda EJ, Pawlowska M, Legutko D, Matryba P, Koza P, Konopka W, Owczarek D, Wawrzyniak M, Loza-Alvarez P, and Kaczmarek L
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- Animals, Green Fluorescent Proteins genetics, Neurons cytology, Promoter Regions, Genetic genetics, Rats, Rats, Transgenic, Rats, Wistar, Thy-1 Antigens genetics, Thy-1 Antigens metabolism, Brain diagnostic imaging, Brain Mapping methods, Imaging, Three-Dimensional methods, Microscopy, Fluorescence methods
- Abstract
Whole-brain imaging with light-sheet fluorescence microscopy and optically cleared tissue is a new, rapidly developing research field. Whereas successful attempts to clear and image mouse brain have been reported, a similar result for rats has proven difficult to achieve. Herein, we report on creating novel transgenic rat harboring fluorescent reporter GFP under control of neuronal gene promoter. We then present data on clearing the rat brain, showing that FluoClearBABB was found superior over passive CLARITY and CUBIC methods. Finally, we demonstrate efficient imaging of the rat brain using light-sheet fluorescence microscopy.
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- 2016
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