13,080 results on '"Mathew, J"'
Search Results
2. Testing for Restricted Stochastic Dominance under Survey Nonresponse with Panel Data: Theory and an Evaluation of Poverty in Australia
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Tabri, Rami V. and Elias, Mathew J.
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Economics - Econometrics - Abstract
This paper lays the groundwork for a unifying approach to stochastic dominance testing under survey nonresponse that integrates the partial identification approach to incomplete data and design-based inference for complex survey data. We propose a novel inference procedure for restricted $s$th-order stochastic dominance, tailored to accommodate a broad spectrum of nonresponse assumptions. The method uses pseudo-empirical likelihood to formulate the test statistic and compares it to a critical value from the chi-squared distribution with one degree of freedom. We detail the procedure's asymptotic properties under both null and alternative hypotheses, establishing its uniform validity under the null and consistency against various alternatives. Using the Household, Income and Labour Dynamics in Australia survey, we demonstrate the procedure's utility in a sensitivity analysis of temporal poverty comparisons among Australian households.
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- 2024
3. Deep Learning of Structural Morphology Imaged by Scanning X-ray Diffraction Microscopy
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Luo, Aileen, Zhou, Tao, Holt, Martin V., Singer, Andrej, and Cherukara, Mathew J.
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Physics - Applied Physics ,Physics - Computational Physics ,Physics - Data Analysis, Statistics and Probability ,Physics - Instrumentation and Detectors - Abstract
Scanning X-ray nanodiffraction microscopy is a powerful technique for spatially resolving nanoscale structural morphologies by diffraction contrast. One of the critical challenges in experimental nanodiffraction data analysis is posed by the convergence angle of nanoscale focusing optics which creates simultaneous dependency of the far-field scattering data on three independent components of the local strain tensor - corresponding to dilation and two potential rigid body rotations of the unit cell. All three components are in principle resolvable through a spatially mapped sample tilt series however traditional data analysis is computationally expensive and prone to artifacts. In this study, we implement NanobeamNN, a convolutional neural network specifically tailored to the analysis of scanning probe X-ray microscopy data. NanobeamNN learns lattice strain and rotation angles from simulated diffraction of a focused X-ray nanobeam by an epitaxial thin film and can directly make reasonable predictions on experimental data without the need for additional fine-tuning. We demonstrate that this approach represents a significant advancement in computational speed over conventional methods, as well as a potential improvement in accuracy over the current standard.
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- 2024
4. Psychiatric Morbidity among Elderly People Living in Old Age Homes and in the Community: A Comparative Study
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Nagaraj, AKM, Mathew, J, Nanjegowda, RB, Majgi, SM, Purushothama, SM, and Kakkilaya, Dr Srinivas
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JOURNALS: Online Journal of Health and Allied Sciences ,Online Journal of Health and Allied Sciences - Abstract
Background: Disorders such as depression, anxiety, cognitive and psychotic disorders have a high prevalence among elderly. There is some preliminary evidence that life in old age homes is perceived by inmates as more supportive, though the issue is not well studied. Aim: This project is directed towards studying and comparing the psychiatric morbidity and quality of life of elderly people residing in two unique settings: community and old age homes. Method: It is a cross-sectional study where the elderly subjects, 50 each in both the groups, were selected by simple random sampling technique and assessed on Mini Mental Status Examination (MMSE), Informant Questionnaire on Cognitive Decline in Elderly (IQCODE), Brief Psychiatric Rating Scale (BPRS) and Quality of life visual analogue scale. Result: On comparison using suitable statistical analysis, there was no significant difference in the total scores on MMSE, IQCODE and quality of life scale across the groups. Depression was present in 22% of people in the community and 36% of old age home inmates. Psychosis was present in 26% of people in the community and 20% of old age home inmates. Conclusion: The psychiatric morbidity is high in elderly irrespective of the setting in which they live.
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- 2012
5. The Importance of STEM Sense of Belonging and Academic Hope in Enhancing Persistence for Low-Income, Underrepresented STEM Students
- Author
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Michele J. Hansen, Mathew J. Palakal, and Le'Joy White
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The purpose of this longitudinal investigation was to examine the effectiveness of a comprehensive, integrated curricular and co-curricular program designed to build community, provide academic and social support, and promote engagement in academically purposeful activities resulting in more equitable environments for historically underrepresented, low-income science, technology, engineering, and mathematics (STEM) information technology (IT) students. The study also focused on the role that the sense of belonging and academic hope play in enhancing persistence to degree completion. Program participants had significantly higher persistence rates compared to a matched comparison group. Additionally, STEM-specific belonging and academic hope significantly predicted students' intentions to persist to degree completion in IT. A major finding was that STEM domain--specific belonging was a stronger predictor of persistence than general belonging. Our investigation has implications for the role that cohort-based programs, industry engagement, peer mentoring, proactive advising, undergraduate research opportunities, career preparation, and leveraging need-based financial aid play in ensuring equity in STEM.
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- 2024
- Full Text
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6. Predicting ptychography probe positions using single-shot phase retrieval neural network
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Du, Ming, Zhou, Tao, Deng, Junjing, Ching, Daniel J., Henke, Steven, and Cherukara, Mathew J.
- Subjects
Physics - Applied Physics ,Computer Science - Artificial Intelligence ,Computer Science - Computer Vision and Pattern Recognition ,Physics - Data Analysis, Statistics and Probability ,94A08 ,I.4.0 - Abstract
Ptychography is a powerful imaging technique that is used in a variety of fields, including materials science, biology, and nanotechnology. However, the accuracy of the reconstructed ptychography image is highly dependent on the accuracy of the recorded probe positions which often contain errors. These errors are typically corrected jointly with phase retrieval through numerical optimization approaches. When the error accumulates along the scan path or when the error magnitude is large, these approaches may not converge with satisfactory result. We propose a fundamentally new approach for ptychography probe position prediction for data with large position errors, where a neural network is used to make single-shot phase retrieval on individual diffraction patterns, yielding the object image at each scan point. The pairwise offsets among these images are then found using a robust image registration method, and the results are combined to yield the complete scan path by constructing and solving a linear equation. We show that our method can achieve good position prediction accuracy for data with large and accumulating errors on the order of $10^2$ pixels, a magnitude that often makes optimization-based algorithms fail to converge. For ptychography instruments without sophisticated position control equipment such as interferometers, our method is of significant practical potential.
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- 2024
7. Base editing screens define the genetic landscape of cancer drug resistance mechanisms
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Coelho, Matthew A., Strauss, Magdalena E., Watterson, Alex, Cooper, Sarah, Bhosle, Shriram, Illuzzi, Giuditta, Karakoc, Emre, Dinçer, Cansu, Vieira, Sara F., Sharma, Mamta, Moullet, Marie, Conticelli, Daniela, Koeppel, Jonas, McCarten, Katrina, Cattaneo, Chiara M., Veninga, Vivien, Picco, Gabriele, Parts, Leopold, Forment, Josep V., Voest, Emile E., Marioni, John C., Bassett, Andrew, and Garnett, Mathew J.
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- 2024
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8. Overcoming barriers to single-cell RNA sequencing adoption in low- and middle-income countries
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Boakye Serebour, Tracy, Cribbs, Adam P., Baldwin, Mathew J., Masimirembwa, Collen, Chikwambi, Zedias, Kerasidou, Angeliki, and Snelling, Sarah J. B.
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- 2024
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9. Cancer drug-tolerant persister cells: from biological questions to clinical opportunities
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Russo, Mariangela, Chen, Mengnuo, Mariella, Elisa, Peng, Haoning, Rehman, Sumaiyah K., Sancho, Elena, Sogari, Alberto, Toh, Tzen S., Balaban, Nathalie Q., Batlle, Eduard, Bernards, Rene, Garnett, Mathew J., Hangauer, Matthew, Leucci, Eleonora, Marine, Jean-Christophe, O’Brien, Catherine A., Oren, Yaara, Patton, E. Elizabeth, Robert, Caroline, Rosenberg, Susan M., Shen, Shensi, and Bardelli, Alberto
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- 2024
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10. Automated defect identification in coherent diffraction imaging with smart continual learning
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Yildiz, Orcun, Raghavan, Krishnan, Chan, Henry, Cherukara, Mathew J., Balaprakash, Prasanna, Sankaranarayanan, Subramanian, and Peterka, Tom
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- 2024
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11. On the Origin of the sudden Heliospheric Open Magnetic Flux Enhancement during the 2014 Pole Reversal
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Heinemann, Stephan G., Owens, Mathew J., Temmer, Manuela, Turtle, James A., Arge, Charles N., Henney, Carl J., Pomoell, Jens, Asvestari, Eleanna, Linker, Jon A., Downs, Cooper, Caplan, Ronald M., Hofmeister, Stefan J., Scolini, Camilla, Pinto, Rui F., and Madjarska, Maria S.
- Subjects
Astrophysics - Solar and Stellar Astrophysics - Abstract
Coronal holes are recognized as the primary sources of heliospheric open magnetic flux (OMF). However, a noticeable gap exists between in-situ measured OMF and that derived from remote sensing observations of the Sun. In this study, we investigate the OMF evolution and its connection to solar structures throughout 2014, with special emphasis on the period from September to October, where a sudden and significant OMF increase was reported. By deriving the OMF evolution at 1au, modeling it at the source surface, and analyzing solar photospheric data, we provide a comprehensive analysis of the observed phenomenon. First, we establish a strong correlation between the OMF increase and the solar magnetic field derived from a Potential Field Source Surface (PFSS) model ($cc_{\mathrm{Pearson}}=0.94$). Moreover, we find a good correlation between the OMF and the open flux derived from solar coronal holes ($cc_{\mathrm{Pearson}}=0.88$), although the coronal holes only contain $14-32\%$ of the Sun's total open flux. However, we note that while the OMF evolution correlates with coronal hole open flux, there is no correlation with the coronal hole area evolution ($cc_{\mathrm{Pearson}}=0.0$). The temporal increase in OMF correlates with the vanishing remnant magnetic field at the southern pole, caused by poleward flux circulations from the decay of numerous active regions months earlier. Additionally, our analysis suggests a potential link between the OMF enhancement and the concurrent emergence of the largest active region in solar cycle 24. In conclusion, our study provides insights into the strong increase in OMF observed during September to October 2014., Comment: accepted in ApJ
- Published
- 2024
12. Three-dimensional Hard X-ray Ptychographic Reflectometry Imaging on Extended Mesoscopic Surface Structures
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Myint, Peco, Tripathi, Ashish, Wojcik, Michael J., Deng, Junjing, Cherukara, Mathew J., Schwarz, Nicholas, Narayanan, Suresh, Wang, Jin, Chu, Miaoqi, and Jiang, Zhang
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Physics - Optics - Abstract
Many nano and quantum devices, with their sizes often spanning from millimeters down to sub-nanometer, have intricate low-dimensional, non-uniform, or hierarchical structures on surfaces and interfaces. Since their functionalities are dependent on these structures, high-resolution surface-sensitive characterization becomes imperative to gain a comprehensive understanding of the function-structure relationship. We thus developed hard X-ray ptychographic reflectometry imaging, a new technique that merges the high-resolution two-dimensional imaging capabilities of hard X-ray ptychography for extended objects, with the high-resolution depth profiling capabilities of X-ray reflectivity for layered structures. The synergy of these two methods fully leverages both amplitude and phase information from ptychography reconstruction to not only reveal surface topography and localized structures such as shapes and electron densities, but also yields statistical details such as interfacial roughness that is not readily accessible through coherent imaging solely. The hard X-ray ptychographic reflectometry imaging is well-suited for three-dimensional imaging of mesoscopic samples, particularly those comprising planar or layered nanostructures on opaque supports, and could also offer a high-resolution surface metrology and defect analysis on semiconductor devices such as integrated nanocircuits and lithographic photomasks for microchip fabrications., Comment: 43 pages, 11 figures
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- 2024
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13. A Red Teaming Framework for Securing AI in Maritime Autonomous Systems
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Walter, Mathew J., Barrett, Aaron, and Tam, Kimberly
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Computer Science - Cryptography and Security ,Computer Science - Artificial Intelligence - Abstract
Artificial intelligence (AI) is being ubiquitously adopted to automate processes in science and industry. However, due to its often intricate and opaque nature, AI has been shown to possess inherent vulnerabilities which can be maliciously exploited with adversarial AI, potentially putting AI users and developers at both cyber and physical risk. In addition, there is insufficient comprehension of the real-world effects of adversarial AI and an inadequacy of AI security examinations; therefore, the growing threat landscape is unknown for many AI solutions. To mitigate this issue, we propose one of the first red team frameworks for evaluating the AI security of maritime autonomous systems. The framework provides operators with a proactive (secure by design) and reactive (post-deployment evaluation) response to securing AI technology today and in the future. This framework is a multi-part checklist, which can be tailored to different systems and requirements. We demonstrate this framework to be highly effective for a red team to use to uncover numerous vulnerabilities within a real-world maritime autonomous systems AI, ranging from poisoning to adversarial patch attacks. The lessons learned from systematic AI red teaming can help prevent MAS-related catastrophic events in a world with increasing uptake and reliance on mission-critical AI.
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- 2023
14. Opportunities for Retrieval and Tool Augmented Large Language Models in Scientific Facilities
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Prince, Michael H., Chan, Henry, Vriza, Aikaterini, Zhou, Tao, Sastry, Varuni K., Dearing, Matthew T., Harder, Ross J., Vasudevan, Rama K., and Cherukara, Mathew J.
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Computer Science - Computational Engineering, Finance, and Science ,Condensed Matter - Materials Science ,Physics - Accelerator Physics ,Physics - Applied Physics ,Physics - Instrumentation and Detectors - Abstract
Upgrades to advanced scientific user facilities such as next-generation x-ray light sources, nanoscience centers, and neutron facilities are revolutionizing our understanding of materials across the spectrum of the physical sciences, from life sciences to microelectronics. However, these facility and instrument upgrades come with a significant increase in complexity. Driven by more exacting scientific needs, instruments and experiments become more intricate each year. This increased operational complexity makes it ever more challenging for domain scientists to design experiments that effectively leverage the capabilities of and operate on these advanced instruments. Large language models (LLMs) can perform complex information retrieval, assist in knowledge-intensive tasks across applications, and provide guidance on tool usage. Using x-ray light sources, leadership computing, and nanoscience centers as representative examples, we describe preliminary experiments with a Context-Aware Language Model for Science (CALMS) to assist scientists with instrument operations and complex experimentation. With the ability to retrieve relevant information from facility documentation, CALMS can answer simple questions on scientific capabilities and other operational procedures. With the ability to interface with software tools and experimental hardware, CALMS can conversationally operate scientific instruments. By making information more accessible and acting on user needs, LLMs could expand and diversify scientific facilities' users and accelerate scientific output.
- Published
- 2023
15. Multi-source connectivity as the driver of solar wind variability in the heliosphere
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Yardley, Stephanie L., Brooks, David H., D’Amicis, Raffaella, Owen, Christopher J., Long, David M., Baker, Deb, Démoulin, Pascal, Owens, Mathew J., Lockwood, Mike, Mihailescu, Teodora, Coburn, Jesse T., Dewey, Ryan M., Müller, Daniel, Suen, Gabriel H. H., Ngampoopun, Nawin, Louarn, Philippe, Livi, Stefano, Lepri, Sue, Fludra, Andrzej, Haberreiter, Margit, and Schühle, Udo
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- 2024
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16. Durability of the moderate-to-heavy-intensity transition is related to the effects of prolonged exercise on severe-intensity performance
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Hamilton, Kate, Kilding, Andrew E., Plews, Daniel J., Mildenhall, Mathew J., Waldron, Mark, Charoensap, Thanchanok, Cox, Tobias H., Brick, Matthew J., Leigh, Warren B., and Maunder, Ed
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- 2024
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17. The Importance of STEM Sense of Belonging and Academic Hope in Enhancing Persistence for Low-Income, Underrepresented STEM Students
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Hansen, Michele J., Palakal, Mathew J., and White, Le’Joy
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- 2024
- Full Text
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18. Impact of heat stress on physio-biochemical parameters during early lactation of crossbred dairy cattle
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Swaminathan, Athulya, Beena, V., Babitha, V., Parvathy, V. S., Shynu, M., Greeshma, Joy, Gleeja, V. L., Megha, P. S., Kulamkuthiyil, Mathew J., Ragupathi, B., Ramnath, V., and Joseph Bunglavan, Surej
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- 2024
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19. Data-driven discovery of dynamics from time-resolved coherent scattering
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Andrejevic, Nina, Zhou, Tao, Zhang, Qingteng, Narayanan, Suresh, Cherukara, Mathew J., and Chan, Maria K. Y.
- Subjects
Condensed Matter - Materials Science - Abstract
Coherent X-ray scattering (CXS) techniques are capable of interrogating dynamics of nano- to mesoscale materials systems at time scales spanning several orders of magnitude. However, obtaining accurate theoretical descriptions of complex dynamics is often limited by one or more factors -- the ability to visualize dynamics in real space, computational cost of high-fidelity simulations, and effectiveness of approximate or phenomenological models. In this work, we develop a data-driven framework to uncover mechanistic models of dynamics directly from time-resolved CXS measurements without solving the phase reconstruction problem for the entire time series of diffraction patterns. Our approach uses neural differential equations to parameterize unknown real-space dynamics and implements a computational scattering forward model to relate real-space predictions to reciprocal-space observations. This method is shown to recover the dynamics of several computational model systems under various simulated conditions of measurement resolution and noise. Moreover, the trained model enables estimation of long-term dynamics well beyond the maximum observation time, which can be used to inform and refine experimental parameters in practice. Finally, we demonstrate an experimental proof-of-concept by applying our framework to recover the probe trajectory from a ptychographic scan. Our proposed framework bridges the wide existing gap between approximate models and complex data.
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- 2023
- Full Text
- View/download PDF
20. Coronal Models and Detection of Open Magnetic Field
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Asvestari, Eleanna, Temmer, Manuela, Caplan, Ronald M., Linker, Jon A., Heinemann, Stephan G., Pinto, Rui F., Henney, Carl J., Arge, Charles N., Owens, Mathew J., Madjarska, Maria S., Pomoell, Jens, Hofmeister, Stefan J., Scolini, Camilla, and Samara, Evangelia
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Astrophysics - Solar and Stellar Astrophysics - Abstract
A plethora of coronal models, from empirical to more complex magnetohydrodynamic (MHD) ones, are being used for reconstructing the coronal magnetic field topology and estimating the open magnetic flux. However, no individual solution fully agrees with coronal hole observations and in situ measurements of open flux at 1~AU, as there is a strong deficit between model and observations contributing to the known problem of the missing open flux. In this paper we investigate the possible origin of the discrepancy between modeled and observed magnetic field topology by assessing the effect on the simulation output by the choice of the input boundary conditions and the simulation set up, including the choice of numerical schemes and the parameter initialization. In the frame of this work, we considered four potential field source surface based models and one fully MHD model, different types of global magnetic field maps and model initiation parameters. After assessing the model outputs using a variety of metrics, we conclude that they are highly comparable regardless of the differences set at initiation. When comparing all models to coronal hole boundaries extracted by extreme ultraviolet (EUV) filtergrams we find that they do not compare well. This miss-match between observed and modeled regions of open field is a candidate contributing to the open flux problem.
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- 2023
21. AI-enabled Lorentz microscopy for quantitative imaging of nanoscale magnetic spin textures
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McCray, Arthur RC, Zhou, Tao, Kandel, Saugat, Petford-Long, Amanda, Cherukara, Mathew J, and Phatak, Charudatta
- Subjects
Quantum Physics ,Physical Sciences ,Machine Learning and Artificial Intelligence ,Bioengineering ,Biomedical Imaging ,Theoretical and computational chemistry ,Materials engineering ,Condensed matter physics - Abstract
The manipulation and control of nanoscale magnetic spin textures are of rising interest as they are potential foundational units in next-generation computing paradigms. Achieving this requires a quantitative understanding of the spin texture behavior under external stimuli using in situ experiments. Lorentz transmission electron microscopy (LTEM) enables real-space imaging of spin textures at the nanoscale, but quantitative characterization of in situ data is extremely challenging. Here, we present an AI-enabled phase-retrieval method based on integrating a generative deep image prior with an image formation forward model for LTEM. Our approach uses a single out-of-focus image for phase retrieval and achieves significantly higher accuracy and robustness to noise compared to existing methods. Furthermore, our method is capable of isolating sample heterogeneities from magnetic contrast, as shown by application to simulated and experimental data. This approach allows quantitative phase reconstruction of in situ data and can also enable near real-time quantitative magnetic imaging.
- Published
- 2024
22. The importance of boundary evolution for solar-wind modelling
- Author
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Mathew J. Owens, Luke Barnard, and Charles N. Arge
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Medicine ,Science - Abstract
Abstract The solar wind is a continual outflow of plasma and magnetic field from the Sun’s upper atmosphere—the corona—that expands to fills the solar system. Variability in the near-Earth solar-wind conditions can produce adverse space weather that impacts ground- and space-based technologies. Consequently, numerical fluid models of the solar wind are used to forecast conditions a few days ahead. The solar-wind inner-boundary conditions are supplied by models of the corona that are, in turn, constrained by observations of the photospheric magnetic field. While solar eruptions—coronal mass ejections (CMEs)—are treated as time-dependent structures, a single coronal “snapshot” is typically used to determine the ambient solar-wind for a complete model run. Thus, all available time-history information from previous coronal-model solutions is discarded and the solar wind is treated as a steady-state flow, unchanging in the rotating frame of the Sun. In this study, we use 1 year of daily-updated coronal-model solutions to comprehensively compare steady-state solar-wind modelling with a time-dependent method. We demonstrate, for the first time, how the SS approach can fundamentally misrepresent the accuracy of coronal models. We also attribute three key problems with current space-weather forecasting directly to the steady-state approach: (1) the seemingly paradoxical result that forecasts based on observations from 3-days previous are more accurate than forecasts based on the most recent observations; (2) high inconsistency, with forecasts for a given day jumping significantly as new observations become available, changing CME propagation times by up to 17 h; and (3) insufficient variability in the heliospheric magnetic field, which controls solar energetic particle propagation to Earth. The time-dependent approach is shown to alleviate all three issues. It provides a consistent, physical solution which more accurately represents the information present in the coronal models. By incorporating the time history in the solar wind along the Sun-Earth line, the time-dependent approach will provide improvements to forecasting CME propagation to Earth.
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- 2024
- Full Text
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23. Opportunities for retrieval and tool augmented large language models in scientific facilities
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Michael H. Prince, Henry Chan, Aikaterini Vriza, Tao Zhou, Varuni K. Sastry, Yanqi Luo, Matthew T. Dearing, Ross J. Harder, Rama K. Vasudevan, and Mathew J. Cherukara
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Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Computer software ,QA76.75-76.765 - Abstract
Abstract Upgrades to advanced scientific user facilities such as next-generation x-ray light sources, nanoscience centers, and neutron facilities are revolutionizing our understanding of materials across the spectrum of the physical sciences, from life sciences to microelectronics. However, these facility and instrument upgrades come with a significant increase in complexity. Driven by more exacting scientific needs, instruments and experiments become more intricate each year. This increased operational complexity makes it ever more challenging for domain scientists to design experiments that effectively leverage the capabilities of and operate on these advanced instruments. Large language models (LLMs) can perform complex information retrieval, assist in knowledge-intensive tasks across applications, and provide guidance on tool usage. Using x-ray light sources, leadership computing, and nanoscience centers as representative examples, we describe preliminary experiments with a Context-Aware Language Model for Science (CALMS) to assist scientists with instrument operations and complex experimentation. With the ability to retrieve relevant information from facility documentation, CALMS can answer simple questions on scientific capabilities and other operational procedures. With the ability to interface with software tools and experimental hardware, CALMS can conversationally operate scientific instruments. By making information more accessible and acting on user needs, LLMs could expand and diversify scientific facilities’ users and accelerate scientific output.
- Published
- 2024
- Full Text
- View/download PDF
24. Impact of temperature humidity index (THI) on blood gas and electrolytes of dairy cows in late gestation
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Mathew J. Kulamkuthiyil, K. Karthiayini, V. Ramnath, Aziz Zarina, Surej Joseph Bunglavan, and V. L. Gleeja
- Subjects
Animal biochemistry ,QP501-801 ,Science (General) ,Q1-390 - Abstract
The study was carried out to assess the impact of heat stress on dairy cows in late gestation and their newborn calves. Study was conducted in two phases in crossbred cattle during last trimester of pregnancy, maintained in University Livestock Farm and Fodder Research Development Scheme, Mannuthy, KVASU. December to February with minimum THI was taken as season 1 and March to May with maximum THI as season 2 of the study. Microclimatic data in the animal shed was recorded three times at three days intervals. The ambient temperature, relative humidity and THI obtained during season 2 was significantly (p
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- 2024
- Full Text
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25. Data-driven discovery of dynamics from time-resolved coherent scattering
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Nina Andrejevic, Tao Zhou, Qingteng Zhang, Suresh Narayanan, Mathew J. Cherukara, and Maria K. Y. Chan
- Subjects
Materials of engineering and construction. Mechanics of materials ,TA401-492 ,Computer software ,QA76.75-76.765 - Abstract
Abstract Coherent X-ray scattering (CXS) techniques are capable of interrogating dynamics of nano- to mesoscale materials systems at time scales spanning several orders of magnitude. However, obtaining accurate theoretical descriptions of complex dynamics is often limited by one or more factors—the ability to visualize dynamics in real space, computational cost of high-fidelity simulations, and effectiveness of approximate or phenomenological models. In this work, we develop a data-driven framework to uncover mechanistic models of dynamics directly from time-resolved CXS measurements without solving the phase reconstruction problem for the entire time series of diffraction patterns. Our approach uses neural differential equations to parameterize unknown real-space dynamics and implements a computational scattering forward model to relate real-space predictions to reciprocal-space observations. This method is shown to recover the dynamics of several computational model systems under various simulated conditions of measurement resolution and noise. Moreover, the trained model enables estimation of long-term dynamics well beyond the maximum observation time, which can be used to inform and refine experimental parameters in practice. Finally, we demonstrate an experimental proof-of-concept by applying our framework to recover the probe trajectory from a ptychographic scan. Our proposed framework bridges the wide existing gap between approximate models and complex data.
- Published
- 2024
- Full Text
- View/download PDF
26. AI-enabled Lorentz microscopy for quantitative imaging of nanoscale magnetic spin textures
- Author
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McCray, Arthur R. C., Zhou, Tao, Kandel, Saugat, Petford-Long, Amanda, Cherukara, Mathew J., and Phatak, Charudatta
- Subjects
Condensed Matter - Materials Science ,Physics - Applied Physics ,Physics - Computational Physics - Abstract
The manipulation and control of nanoscale magnetic spin textures is of rising interest as they are potential foundational units in next-generation computing paradigms. Achieving this requires a quantitative understanding of the spin texture behavior under external stimuli using in situ experiments. Lorentz transmission electron microscopy (LTEM) enables real-space imaging of spin textures at the nanoscale, but quantitative characterization of in situ data is extremely challenging. Here, we present an AI-enabled phase-retrieval method based on integrating a generative deep image prior with an image formation forward model for LTEM. Our approach uses a single out-of-focus image for phase retrieval and achieves significantly higher accuracy and robustness to noise compared to existing methods. Furthermore, our method is capable of isolating sample heterogeneities from magnetic contrast, as shown by application to simulated and experimental data. This approach allows quantitative phase reconstruction of in situ data and can also enable near real-time quantitative magnetic imaging.
- Published
- 2023
27. The importance of boundary evolution for solar-wind modelling
- Author
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Owens, Mathew J., Barnard, Luke, and Arge, Charles N.
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- 2024
- Full Text
- View/download PDF
28. Opportunities for retrieval and tool augmented large language models in scientific facilities
- Author
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Prince, Michael H., Chan, Henry, Vriza, Aikaterini, Zhou, Tao, Sastry, Varuni K., Luo, Yanqi, Dearing, Matthew T., Harder, Ross J., Vasudevan, Rama K., and Cherukara, Mathew J.
- Published
- 2024
- Full Text
- View/download PDF
29. Data-driven discovery of dynamics from time-resolved coherent scattering
- Author
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Andrejevic, Nina, Zhou, Tao, Zhang, Qingteng, Narayanan, Suresh, Cherukara, Mathew J., and Chan, Maria K. Y.
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- 2024
- Full Text
- View/download PDF
30. Publisher Correction: AI-NERD: Elucidation of relaxation dynamics beyond equilibrium through AI-informed X-ray photon correlation spectroscopy
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Horwath, James P., Lin, Xiao-Min, He, Hongrui, Zhang, Qingteng, Dufresne, Eric M., Chu, Miaoqi, Sankaranarayanan, Subramanian K.R.S., Chen, Wei, Narayanan, Suresh, and Cherukara, Mathew J.
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- 2024
- Full Text
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31. AI-NERD: Elucidation of relaxation dynamics beyond equilibrium through AI-informed X-ray photon correlation spectroscopy
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Horwath, James P., Lin, Xiao-Min, He, Hongrui, Zhang, Qingteng, Dufresne, Eric M., Chu, Miaoqi, Sankaranarayanan, Subramanian K.R.S., Chen, Wei, Narayanan, Suresh, and Cherukara, Mathew J.
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- 2024
- Full Text
- View/download PDF
32. Robotic monitoring of dunes: a dataset from the EU habitats 2110 and 2120 in Sardinia (Italy)
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Angelini, Franco, Pollayil, Mathew J., Rivieccio, Giovanni, Caria, Maria Carmela, Bagella, Simonetta, and Garabini, Manolo
- Published
- 2024
- Full Text
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33. What our children lost and gained at the time of school closure during the Covid-19 pandemic: a study on psychological distress, behavioural concerns and protective factors of resilience among preschool children in Kerala, India
- Author
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Vincent, Jose, Santhakumari, Resmi Madhusoodanan, Nalinakumari Kesavan Nair, Anjana, Sharahudeen, Anisha, K.P, Asvini, Suresh, Meenu Maheswari, Valamparampil, Mathew J., A.V, Gayathri, Sujatha, Chintha, and Thekkumkara Surendran, Anish
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- 2024
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34. scSNV-seq: high-throughput phenotyping of single nucleotide variants by coupled single-cell genotyping and transcriptomics
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Cooper, Sarah E., Coelho, Matthew A., Strauss, Magdalena E., Gontarczyk, Aleksander M., Wu, Qianxin, Garnett, Mathew J., Marioni, John C., and Bassett, Andrew R.
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- 2024
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35. Multi-prong quality improvement approach for increasing mother’s own milk use for very low birth weight infants
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Boone, Neal, Bohara, Beth, Rohrer, Allison, Gros, Molly, Gregoski, Mathew J., Lee, Kimberly, Wagner, Carol L., and Chetta, Katherine
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- 2024
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36. Allocating operating room time in orthopaedic trauma: a survey in medical ethics
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Lynch, Mary-Katherine, Rivas, Gabriella, Gregoski, Mathew J., Hartsock, Langdon, and Reid, Kristoff
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- 2024
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37. Coronal Heating as Determined by the Solar Flare Frequency Distribution Obtained by Aggregating Case Studies
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Mason, James Paul, Werth, Alexandra, West, Colin G., Youngblood, Allison A., Woodraska, Donald L., Peck, Courtney, Lacjak, Kevin, Frick, Florian G., Gabir, Moutamen, Alsinan, Reema A., Jacobsen, Thomas, Alrubaie, Mohammad, Chizmar, Kayla M., Lau, Benjamin P., Dominguez, Lizbeth Montoya, Price, David, Butler, Dylan R., Biron, Connor J., Feoktistov, Nikita, Dewey, Kai, Loomis, N. E., Bodzianowski, Michal, Kuybus, Connor, Dietrick, Henry, Wolfe, Aubrey M., Guerrero, Matt, Vinson, Jessica, Starbuck, Peter, Litton, Shelby D, Beck, M. G., Fisch, Jean-Paul, West, Ayana, Muniz, Alexis A., Chavez, Luis, Upthegrove, Zachary T., Runyon, Brenton M., Salazar, J., Kritzberg, Jake E., Murrel, Tyler, Ho, Ella, LaFemina, Quintin Y., Elbashir, Sara I., Chang, Ethan C., Hudson, Zachary A., Nussbaum, Rosemary O., Kennedy, Kellen, Kim, Kevin, Arango, Camila Villamil, Albakr, Mohammed A., Rotter, Michael, Garscadden, A. J., Salcido-Alcontar JR, Antonio, Pearl, Harrison M., Stepaniak, Tyler, Marquez, Josie A., Marsh, Lauren, Andringa, Jesse C, Osogwin, Austin, Shields, Amanda M., Brookins, Sarah, Hach, Grace K., Clausi, Alexis R., Millican, Emily B., Jaimes, Alan A, Graham, Alaina S., Burritt, John J., Perez, J. S., Ramirez, Nathaniel, Suri, Rohan, Myer, Michael S., Kresek, Zoe M., Goldsberry, C. A., Payne, Genevieve K., Jourabchi, Tara, Hu, J., Lucca, Jeffrey, Feng, Zitian, Gilpatrick, Connor B., Khan, Ibraheem A., Warble, Keenan, Sweeney, Joshua D., Dorricott, Philip, Meyer, Ethan, Kothamdi, Yash S., Sohail, Arman S., Grell, Kristyn, Floyd, Aidan, Bard, Titus, Mathieson, Randi M., Reed, Joseph, Cisneros, Alexis, Payne, Matthew P., Jarriel, J. R., Mora, Jacqueline Rodriguez, Sundell, M. E., Patel, Kajal, Alesmail, Mohammad, Alnasrallah, Yousef A, Abdullah, Jumana T., Molina-Saenz, Luis, Tayman, K. E., Brown, Gabriel T., Kerr-Layton, Liana, Berriman-Rozen, Zachary D., Hiatt, Quinn, Kalra, Etash, Ong, Jason, Vadayar, Shreenija, Shannahan, Callie D., Benke, Evan, zhang, Jinhua, Geisman, Jane, Martyr, Cara, Ameijenda, Federico, Akruwala, Ushmi H., Nehring, Molly, Kissner, Natalie, Rule, Ian C., Learned, Tyler, Smith, Alexandra N., Mazzotta, Liam, Rounsefell, Tyndall, Eyeson, Elizabeth A., Shelby, Arlee K., Moll, Tyler S, Menke, Riley, Shahba, Hannan, House Jr., Tony A., Clark, David B., Burns, Annemarie C., de La Beaujardiere, Tristan, Trautwein, Emily D., Plantz, Will, Reeves, Justin, Faber, Ian, Buxton, B. W., Highhouse, Nigel, Landrey, Kalin, Hansen, Connor M, Chen, Kevin, Hales, Ryder Buchanan, Borgerding, Luke R., Guo, Mutian, Crow, Christian J., Whittall, Lloyd C., Simmons, Conor, Folarin, Adeduni, Parkinson, Evan J., Rahn, Anna L., Blevins, Olivia, Morelock, Annalise M., Kelly, Nicholas, Parker, Nathan L., Smith, Kelly, Plzak, Audrey E., Saeb, David, Hares, Cameron T., Parker, Sasha R., McCoy, Andrew, Pham, Alexander V., Lauzon, Megan, Kennedy, Cayla J., Reyna, Andrea B., Acosta, Daniela M. Meza, Cool, Destiny J., Steinbarth, Sheen L., Mendoza-Anselmi, Patricia, Plutt, Kaitlyn E., Kipp, Isabel M, Rakhmonova, M., Brown, Cameron L., Van Anne, Gabreece, Moss, Alexander P., Golden, Olivia, Kirkpatrick, Hunter B., Colleran, Jake R., Sullivan, Brandon J, Tran, Kevin, Carpender, Michael Andrew, Mundy, Aria T., Koenig, Greta, Oudakker, Jessica, Engelhardt, Rasce, Ales, Nolan, Wexler, Ethan Benjamin, Beato, Quinn I, Chen, Lily, Cochran, Brooke, Hill, Paula, Hamilton, Sean R., Hashiro, Kyle, Khan, Usman, Martinez, Alexa M., Brockman, Jennifer L., Mallory, Macguire, Reed, Charlie, Terrile, Richard, Singh, Savi, Watson, James Adam, Creany, Joshua B., Price, Nicholas K., Miften, Aya M., Tran, Bryn, Kamenetskiy, Margaret, Martinez, Jose R., Opp, Elena N., Huang, Jianyang, Fails, Avery M., Belei, Brennan J., Slocum, Ryan, Astalos, Justin, East, Andrew, Nguyen, Lena P., Pherigo, Callie C, East, Andrew N., Li, David Y., Nelson, Maya LI, Taylor, Nicole, Odbayar, Anand, Rives, Anna Linnea, Mathur, Kabir P., Billingsley, Jacob, Polikoff, Hyden, Driscoll, Michael, Wilson, Orion K., Lahmers, Kyle, Toon, Nathaniel J., Lippincott, Sam, Musgrave, Andrew J., Gregory, Alannah H., Pitsuean-Meier, Sedique, Jesse, Trevor, Smith, Corey, Miles, Ethan J., Kainz, Sabrina J. H. T., Ji, Soo Yeun, Nguyen, Lena, Aryan, Maryam, Dinser, Alexis M., Shortman, Jadon, Bastias, Catalina S, Umbricht, Thomas D, Cage, Breonna, Randolph, Parker, Pollard, Matthew, Simone, Dylan M., Aramians, Andrew, Brecl, Ariana E., Robert, Amanda M., Zenner, Thomas, Saldi, Maxwell, Morales, Gavin, Mendez, Citlali, Syed, Konner, Vogel, Connor Maklain, Cone, Rebecca A., Berhanu, Naomi, Carpenter, Emily, Leoni, Cecilia, Bryan, Samuel, Ramachandra, Nidhi, Shaw, Timothy, Lee, E. C., Monyek, Eli, Wegner, Aidan B., Sharma, Shajesh, Lister, Barrett, White, Jamison R., Willard, John S., Sulaiman, S. A, Blandon, Guillermo, Narayan, Anoothi, Ruger, Ryan, Kelley, Morgan A., Moreno, Angel J., Balcer, Leo M, Ward-Chene, N. R. D., Shelby, Emma, Reagan, Brian D., Marsh, Toni, Sarkar, Sucheta, Kelley, Michael P., Fell, Kevin, Balaji, Sahana, Hildebrand, Annalise K., Shoha, Dominick, Nandu, Kshmya, Tucker, Julia, Cancio, Alejandro R., Wang, Jiawei, Rapaport, Sarah Grace, Maravi, Aimee S., Mayer, Victoria A., Miller, Andrew, Bence, Caden, Koke, Emily, Fauntleroy, John T, Doermer, Timothy, Al-Ghazwi, Adel, Morgan, Remy, Alahmed, Mohammed S., Mathavan, Adam Izz Khan Mohd Reduan, Silvester, H. K., Weiner, Amanda M., Liu, Nianzi, Iovan, Taro, Jensen, Alexander V., AlHarbi, Yazeed A., Jiang, Yufan, Zhang, Jiaqi, Jones, Olivia M., Huang, Chenqi, Reh, Eileen N., Alhamli, Dania, Pettine, Joshua, Zhou, Chongrui, Kriegman, Dylan, Yang, Jianing, Ash, Kevin, Savage, Carl, Kaiser, Emily, Augenstein, Dakota N., Padilla, Jacqueline, Stark, Ethan K., Hansen, Joshua A., Kokes, Thomas, Huynh, Leslie, Sanchez-Sanchez, Gustavo, Jeseritz, Luke A., Carillion, Emma L., Vepa, Aditya V., Khanal, Sapriya, Behr, Braden, Martin, Logan S., McMullan, Jesse J., Zhao, Tianwei, Williams, Abigail K., Alqabani, Emeen, Prinster, Gale H., Horne, Linda, Ruggles-Delgado, Kendall, Otto, Grant, Gomez, Angel R., Nguyen, Leonardo, Brumley, Preston J., Venegas, Nancy Ortiz, Varela, Ilian, Brownlow, Jordi, Cruz, Avril, Leiker, Linzhi, Batra, Jasleen, Hutabarat, Abigail P., Nunes-Valdes, Dario, Jameson, Connor, Naqi, Abdulaziz, Adams, Dante Q., Biediger, Blaine B., Borelli, William T, Cisne, Nicholas A., Collins, Nathaniel A., Curnow, Tyler L., Gopalakrishnan, Sean, Griffin, Nicholas F., Herrera, Emanuel, McGarvey, Meaghan V., Mellett, Sarah, Overchuk, Igor, Shaver, Nathan, Stratmeyer, Cooper N., Vess, Marcus T., Juels, Parker, Alyami, Saleh A., Gale, Skylar, Wallace, Steven P., Hunter, Samuel C, Lonergan, Mia C., Stewart, Trey, Maksimuk, Tiffany E., Lam, Antonia, Tressler, Judah, Napoletano, Elena R., Miller, Joshua B., Roy, Marc G., Chanders, Jasey, Fischer, Emmalee, Croteau, A. J., Kuiper, Nicolas A., Hoffman, Alex, DeBarros, Elyse, Curry, Riley T., Brzostowicz, A., Courtney, Jonas, Zhao, Tiannie, Szabo, Emi, Ghaith, Bandar Abu, Slyne, Colin, Beck, Lily, Quinonez, Oliver, Collins, Sarah, Madonna, Claire A., Morency, Cora, Palizzi, Mallory, Herwig, Tim, Beauprez, Jacob N., Ghiassi, Dorsa, Doran, Caroline R., Yang, Zhanchao, Padgette, Hannah M., Dicken, Cyrus A., Austin, Bryce W., Phalen, Ethan J., Xiao, Catherine, Palos, Adler, Gerhardstein, Phillip, Altenbern, Ava L., Orbidan, Dan, Dorr, Jackson A., Rivas, Guillermo A., Ewing, Calvin A, Giebner, B. C., McEntee, Kelleen, Kite, Emily R., Crocker, K. A., Haley, Mark S., Lezak, Adrienne R., McQuaid, Ella, Jeong, Jacob, Albaum, Jonathan, Hrudka, E. M., Mulcahy, Owen T., Tanguma, Nolan C., Oishi-Holder, Sean, White, Zachary, Coe, Ryan W., Boyer, Christine, Chapman, Mitchell G., Fortino, Elise, Salgado, Jose A., Hellweg, Tim, Martinez, Hazelia K., Mitchell, Alexander J., Schubert, Stephanie H., Schumacher, Grace K, Tesdahl, Corey D, Uphoff, C. H., Vassilyev, Alexandr, Witkoff, Briahn, Wolle, Jackson R., Dice, Kenzie A., Behrer, Timothy A., Bowen, Troy, Campbell, Andrew J, Clarkson, Peter C, Duong, Tien Q., Hawat, Elijah, Lopez, Christian, Olson, Nathaniel P., Osborn, Matthew, Peou, Munisettha E., Vaver, Nicholas J., Husted, Troy, Kallemeyn, Nicolas Ian, Spangler, Ava A, Mccurry, Kyle, Schultze, Courtney, Troisi, Thomas, Thomas, Daniel, Ort, Althea E., Singh, Maya A., Soon, Caitlin, Patton, Catherine, Billman, Jayce A., Jarvis, Sam, Hitt, Travis, Masri, Mirna, Albalushi, Yusef J., Schofer, Matthew J, Linnane, Katherine B., Knott, Philip Whiting, Valencia, Whitney, Arias-Robles, Brian A., Ryder, Diana, Simone, Anna, Abrams, Jonathan M., Belknap, Annelene L., Rouse, Charlotte, Reynolds, Alexander, Petric, Romeo S. L., Gomez, Angel A., Meiselman-Ashen, Jonah B., Carey, Luke, Dias, John S., Fischer-White, Jules, Forbes, Aidan E., Galarraga, Gabriela, Kennedy, Forrest, Lawlor, Rian, Murphy, Maxwell J., Norris, Cooper, Quarderer, Josh, Waller, Caroline, Weber, Robert J., Gunderson, Nicole, Boyne, Tom, Gregory, Joshua A., Propper, Henry Austin, von Peccoz, Charles B. Beck, Branch, Donovan, Clarke, Evelyn, Cutler, Libby, Dabberdt, Frederick M., Das, Swagatam, Figueirinhas, John Alfred D., Fougere, Benjamin L., Roy, Zoe A., Zhao, Noah Y., Cox, Corben L., Barnhart, Logan D. W., Craig, Wilmsen B., Moll, Hayden, Pohle, Kyle, Mueller, Alexander, Smith, Elena K., Spicer, Benjamin C., Aycock, Matthew C., Bat-Ulzii, Batchimeg, Murphy, Madalyn C., Altokhais, Abdullah, Thornally, Noah R., Kleinhaus, Olivia R., Sarfaraz, Darian, Barnes, Grant M., Beard, Sara, Banda, David J, Davis, Emma A. B., Huebsch, Tyler J., Wagoner, Michaela, Griego, Justus, Hale, Jack J. Mc, Porter, Trevor J., Abrashoff, Riley, Phan, Denise M., Smith, Samantha M., Srivastava, Ashish, Schlenker, Jared A. W., Madsen, Kasey O., Hirschmann, Anna E., Rankin, Frederick C, Akbar, Zainab A., Blouin, Ethan, Coleman-Plante, Aislinn, Hintsa, Evan, Lookhoff, Emily, Amer, Hamzi, Deng, Tianyue, Dvorak, Peter, Minimo, Josh, Plummer, William C., Ton, Kelly, Solt, Lincoln, AlAbbas, Batool H., AlAwadhi, Areej A., Cooper, Nicholas M., Corbitt, Jessica S, Dunlap, Christian, Johnson, Owen, Malone, Ryan A., Tellez, Yesica, Wallace, Logan, Ta, Michael-Tan D., Wheeler, Nicola H., Ramirez, Ariana C., Huang, Shancheng, Mehidic, Amar, Christiansen, Katherine E, Desai, Om, Domke, Emerson N., Howell, Noah H., Allsbrook, Martin, Alnaji, Teeb, England, Colin, Siles, Nathan, Burton, Nicholas David, Cruse, Zoe, Gilmartin, Dalton, Kim, Brian T., Hattendorf, Elsie, Buhamad, Maryam, Gayou, Lily, Seglem, Kasper, Alkhezzi, Tameem, Hicks, Imari R., Fife, Ryann, Pelster, Lily M., Fix, Alexander, Sur, Sohan N., Truong, Joshua K., Kubiak, Bartlomiej, Bondar, Matthew, Shi, Kyle Z., Johnston, Julia, Acevedo, Andres B., Lee, Junwon, Solorio, William J., Johnston, Braedon Y., McCormick, Tyler, Olguin, Nicholas, Pastor, Paige J., Wilson, Evan M., Trunko, Benjamin L., Sjoroos, Chris, Adams, Kalvyn N, Bell, Aislyn, Brumage-Heller, Grant, Canales, Braden P., Chiles, Bradyn, Driscoll, Kailer H., Hill, Hallie, Isert, Samuel A., Ketterer, Marilyn, Kim, Matthew M., Mewhirter, William J., Phillips, Lance, Phommatha, Krista, Quinn, Megan S., Reddy, Brooklyn J., Rippel, Matthew, Russell, Bowman, Williams, Sajan, Pixley, Andrew M., Gapin, Keala C., Peterson, B., Ruprecht, Collin, Hardie, Isabelle, Li, Isaac, Erickson, Abbey, Gersabeck, Clint, Gopalani, Mariam, Allanqawi, Nasser, Burton, Taylor, Cahn, Jackson R., Conti, Reese, White, Oliver S., Rojec, Stewart, Hogen, Blake A., Swartz, Jason R., Dick, R., Battist, Lexi, Dunn, Gabrielle M., Gasser, Rachel, Logan, Timothy W., Sinkovic, Madeline, Schaller, Marcus T., Heintz, Danielle A., Enrich, Andrew, Sanchez, Ethan S., Perez, Freddy, Flores, Fernando, Kapla, Shaun D., Shockley, Michael C., Phillips, Justin, Rumley, Madigan, Daboub, Johnston, Karsh, Brennan J., Linders, Bridget, Chen, Sam, Do, Helen C., Avula, Abhinav, French, James M., Bertuccio, Chrisanna, Hand, Tyler, Lee, Adrianna J., Neeland, Brenna K, Salazar, Violeta, Andrew, Carter, Barmore, Abby, Beatty, Thomas, Alonzi, Nicholas, Brown, Ryan, Chandler, Olivia M., Collier, Curran, Current, Hayden, Delasantos, Megan E., Bonilla, Alberto Espinosa de los Monteros, Fowler, Alexandra A., Geneser, Julianne R., Gentry, Eleanor, Gustavsson, E. R., Hansson, Jonathan, Hao, Tony Yunfei, Herrington, Robert N., Kelly, James, Kelly, Teagan, Kennedy, Abigail, Marquez, Mathew J., Meillon, Stella, Palmgren, Madeleine L., Pesce, Anneliese, Ranjan, Anurag, Robertson, Samuel M., Smith, Percy, Smith, Trevor J, Soby, Daniel A., Stratton, Grant L., Thielmann, Quinn N., Toups, Malena C., Veta, Jenna S., Young, Trenton J., Maly, Blake, Manzanares, Xander R., Beijer, Joshua, George, Jacob D., Mills, Dylan P., Ziebold, Josh J, Chambers, Paige, Montoya, Michael, Cheang, Nathan M., Anderson, Hunter J., Duncan, Sheridan J., Ehrlich, Lauren, Hudson, Nathan C., Kiechlin, Jack L., Koch, Will, Lee, Justin, Menassa, Dominic, Oakes, S. H., Petersen, Audrey J., Bunsow, J. R. Ramirez, Bay, Joshua, Ramirez, Sacha, Fenwick, Logan D., Boyle, Aidan P., Hibbard, Lea Pearl, Haubrich, Calder, Sherry, Daniel P., Jenkins, Josh, Furney, Sebastian, Velamala, Anjali A., Krueger, Davis J., Thompson, William N., Chhetri, Jenisha, Lee, Alexis Ying-Shan, Ray, Mia G. V., Recchia, John C., Lengerich, Dylan, Taulman, Kyle, Romero, Andres C., Steward, Ellie N., Russell, Sloan, Hardwick, Dillon F., Wootten, Katelynn, Nguyen, Valerie A., Quispe, Devon, Ragsdale, Cameron, Young, Isabel, Atchley-Rivers, N. S., Stribling, Jordin L., Gentile, Julia G, Boeyink, Taylor A., Kwiatkowski, Daniel, Dupeyron, Tomi Oshima, Crews, Anastasia, Shuttleworth, Mitchell, Dresdner, Danielle C., Flackett, Lydia, Haratsaris, Nicholas, Linger, Morgan I, Misener, Jay H., Patti, Samuel, Pine, Tawanchai P., Marikar, Nasreen, Matessi, Giorgio, Routledge, Allie C., Alkaabi, Suhail, Bartman, Jessica L., Bisacca, Gabrielle E., Busch, Celeste, Edwards, Bree, Staudenmier, Caitlyn, Starling, Travis, McVey, Caden, Montano, Maximus, Contizano, Charles J., Taylor, Eleanor, McIntyre, James K., Victory, Andrew, McCammon, Glen S., Kimlicko, Aspen, Sheldrake, Tucker, Shelchuk, Grace, Von Reich, Ferin J., Hicks, Andrew J., O'neill, Ian, Rossman, Beth, Taylor, Liam C., MacDonald, William, Becker, Simone E., Han, Soonhee, O'Sullivan, Cian, Wilcove, Isaac, Brennan, David J., Hanley, Luke C., Hull, Owen, Wilson, Timothy R., Kalmus, Madison H., Berv, Owen A., Harris, Logan Swous, Doan, Chris H, Londres, Nathan, Parulekar, Anish, Adam, Megan M., Angwin, Abigail, Cabbage, Carter C., Colleran, Zachary, Pietras, Alex, Seux, Octave, Oros, Ryan, Wilkinson, Blake C., Nguyen, Khoa D, Trank-Greene, Maedee, Barone, Kevin M., Snyder, G. L., Biehle, Samuel J, Billig, Brennen, Almquist, Justin Thomas, Dixon, Alyssa M., Erickson, Benjamin, Evans, Nathan, Genne, SL, Kelly, Christopher M, Marcus, Serafima M., Ogle, Caleb, Patel, Akhil, Vendetti, Evan, Courtney, Olivia, Deel, Sean, Del Foco, Leonardo, Gjini, Michael, Haines, Jessica, Hoff, Isabelle J., Jones, M. R., Killian, Dominic, Kuehl, Kirsten, Kuester, Chrisanne, Lantz, Maxwell B., Lee, Christian J, Mauer, Graham, McKemey, Finbar K., Millican, Sarah J., Rosasco, Ryan, Stewart, T. C., VanEtten, Eleanor, Derwin, Zachary, Serio, Lauren, Sickler, Molly G., Blake, Cassidy A., Patel, Neil S., Fox, Margaret, Gray, Michael J, Ziegler, Lucas J., Kumar, Aman Priyadarshi, Polly, Madelyn, Mesgina, Sarah, McMorris, Zane, Griffin, Kyle J., Haile, L. N., Bassel, Claire, Dixon, Thomas J., Beattie, Ryan, Houck, Timothy J, Rodgers, Maeve, Trofino, Tyson R., Lukianow, Dax, Smart, Korben, Hall, Jacqueline L., Bone, Lauren, Baldwin, James O., Doane, Connor, Almohsen, Yousef A., Stamos, Emily, Acha, Iker, Kim, Jake, Samour II, Antonio E., Chavali, S., Kanokthippayakun, Jeerakit, Gotlib, Nicholas, Murphy, Ryan C., Archibald, Jack. W., Brimhall, Alexander J, Boyer, Aidan, Chapman, Logan T., Chadda, Shivank, Sibrell, Lisa, Vallery, Mia M., Conroy, Thomas C., Pan, Luke J., Balajonda, Brian, Fuhrman, Bethany E. S., Alkubaisi, Mohamed, Engelstad, Jacob, Dodrill, Joshua, Fuchs, Calvin R., Bullard-Connor, Gigi, Alhuseini, Isehaq, Zygmunt, James C., Sipowicz, Leo, Hayrynen, Griffin A., McGill, Riley M., Keating, Caden J., Hart, Omer, Cyr, Aidan St., Steinsberger, Christopher H., Thoman, Gerig, Wood, Travis M., Ingram, Julia A., Dominguez, J., Georgiades, Nathaniel James, Johnson, Matthew, Johnson, Sawyer, Pedersen, Alexander J., Ralapanawe, Anoush K, Thomas, Jeffrey J., Sato, Ginn A., Reynolds, Hope, Nasser, Liebe, Mizzi, Alexander Z., Damgaard, Olivia, Baflah, Abdulrahman A., Liu, Steven Y., Salindeho, Adam D., Norden, Kelso, Gearhart, Emily E., Krajnak, Zack, Szeremeta, Philip, Amos, Meggan, Shin, Kyungeun, Muckenthaler, Brandon A., Medialdea, Melissa, Beach, Simone, Wilson, Connor B., Adams, Elena R, Aldhamen, Ahmed, Harris, Coyle M., Hesse, Troy M., Golding, Nathan T., Larter, Zachary, Hernandez, Angel, Morales, Genaro, Traxler, Robert B., Alosaimi, Meshal, Fitton, Aidan F., Aaron, James Holland, Lee, Nathaniel F., Liao, Ryan Z., Chen, Judy, French, Katherine V., Loring, Justin, Colter, Aurora, McConvey, Rowan, Colozzi, Michael, Vann, John D., Scheck, Benjamin T., Weigand, Anthony A, Alhabeeb, Abdulelah, Idoine, Yolande, Woodard, Aiden L., Medellin, Mateo M., Ratajczyk, Nicholas O, Tobin, Darien P., Collins, Jack C., Horning, Thomas M., Pellatz, Nick, Pitten, John, Lordi, Noah, Patterson, Alyx, Hoang, Thi D, Zimmermann, Ingrid H, Wang, Hongda, Steckhahn, Daniel, Aradhya, Arvind J., Oliver, Kristin A., Cai, Yijian, Wang, Chaoran, Yegovtsev, Nikolay, Wu, Mengyu, Ganesan, Koushik, Osborne, Andrew, Wickenden, Evan, Meyer, Josephine C., Chaparro, David, Visal, Aseem, Liu, Haixin, Menon, Thanmay S., Jin, Yan, Wilson, John, Erikson, James W., Luo, Zheng, Shitara, Nanako, Nelson, Emma E, Geerdts, T. R., Ortiz, Jorge L Ramirez, and Lewandowski, H. J.
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Astrophysics - Solar and Stellar Astrophysics - Abstract
Flare frequency distributions represent a key approach to addressing one of the largest problems in solar and stellar physics: determining the mechanism that counter-intuitively heats coronae to temperatures that are orders of magnitude hotter than the corresponding photospheres. It is widely accepted that the magnetic field is responsible for the heating, but there are two competing mechanisms that could explain it: nanoflares or Alfv\'en waves. To date, neither can be directly observed. Nanoflares are, by definition, extremely small, but their aggregate energy release could represent a substantial heating mechanism, presuming they are sufficiently abundant. One way to test this presumption is via the flare frequency distribution, which describes how often flares of various energies occur. If the slope of the power law fitting the flare frequency distribution is above a critical threshold, $\alpha=2$ as established in prior literature, then there should be a sufficient abundance of nanoflares to explain coronal heating. We performed $>$600 case studies of solar flares, made possible by an unprecedented number of data analysts via three semesters of an undergraduate physics laboratory course. This allowed us to include two crucial, but nontrivial, analysis methods: pre-flare baseline subtraction and computation of the flare energy, which requires determining flare start and stop times. We aggregated the results of these analyses into a statistical study to determine that $\alpha = 1.63 \pm 0.03$. This is below the critical threshold, suggesting that Alfv\'en waves are an important driver of coronal heating., Comment: 1,002 authors, 14 pages, 4 figures, 3 tables, published by The Astrophysical Journal on 2023-05-09, volume 948, page 71
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- 2023
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38. An Advanced Synchronized Time Digital Grid Twin Testbed for Relay Misoperation Analysis of Electrical Fault Type Detection Algorithms
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Emilio C. Piesciorovsky, Mathew J. Reno, Maximiliano Ferrari Maglia, and Adam K. Summers
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power system protection ,relaying ,relays ,digital twin ,testbed ,Electronic computers. Computer science ,QA75.5-76.95 ,Applied mathematics. Quantitative methods ,T57-57.97 - Abstract
Distributed energy resources and the number of relays are expected to rise in modern electrical grids; consequently, relay misoperations are also expected to grow. Relays can detect electrical fault types using an internal algorithm and can display the result using light indicators on the front of the relay. However, some relays’ internal algorithms for predicting types of electrical faults could be improved. This study assesses a relay’s external and internal algorithms with an Advanced Synchronized Time Digital Grid Twin (ASTDGT) testbed with paired relays. A misoperation relay analysis focused on measuring the accuracy of using the boundary admittance (the external algorithm) versus the set-default (the internal algorithm) relay method to determine the electrical fault types was performed. In this study, the internal and external relay algorithms were assessed with a synchronized time digital grid twin testbed using a real-time simulator. This testbed evaluated two sets of logic at the same time with the digital grid twin and paired relays in the loop. Different types of electrical faults were simulated, and the relays’ recorded events and electrical fault light indicator states were collected from the human–machine interfaces. This ASTDGT testbed with paired relays successfully evaluated the relay algorithm misoperations. The boundary admittance method had an accuracy of 100% for line-to-line, line-to-ground, and line-to-line ground faults.
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- 2024
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39. Serotype-specific clinical features and spatial distribution of dengue in northern Kerala, India
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Raman Swathy Vaman, Mathew J. Valamparampil, Aswathi Kodenchery Somasundaran, Anjali Jayasree Balakrishnan, Prajit Janardhanan, Arya Rahul, Rajendra Pilankatta, and Thekkumkara Surendran Anish
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dengue ,epidemiology ,gis ,india ,public health ,Medicine - Abstract
Background: Collection and compilation of spatial, meteorological, entomological, and virological data are critical in mitigating climate-sensitive emerging infections like dengue. This study was a holistic attempt to understand the dengue situation in the Kasaragod district of Kerala, India. Methods: This cross-sectional study was conducted in 13 health institutions from June to July 2021. Adult patients presenting with fever and testing positive for NS1 ELISA were subjected to Dengue RT-PCR and serotyping. The spatial and clinical features of the RT-PCR-positive patients, the district’s meteorological data, and the vector indices were studied. Results: The pre-epidemic months were marked by intermittent rainfall, peak ambient temperature and high larval indices. Among the 136 dengue RT-PCR patients studied, 41.2% had DENV2 followed by DENV1 (22.8%), DENV3 (5.9%) and DENV4 (4.4%); with 25% mixed infections. DENV1 showed a higher risk of gastrointestinal manifestations (80.6%, p=0.019) and musculoskeletal symptoms (77.4%, p=0.026) compared with other serotypes. Conclusions: In the context of dengue hyperendemicity, the possibility of an emerging serotype’s dominance coupled with the mixing up of strains should warn the health system regarding future outbreaks. Furthermore, the study emphasizes the importance of monitoring larval indices and the window of opportunity to intervene between environmental predictors and dengue outbreaks.
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- 2024
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40. AI-NERD: Elucidation of relaxation dynamics beyond equilibrium through AI-informed X-ray photon correlation spectroscopy
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James P. Horwath, Xiao-Min Lin, Hongrui He, Qingteng Zhang, Eric M. Dufresne, Miaoqi Chu, Subramanian K.R.S. Sankaranarayanan, Wei Chen, Suresh Narayanan, and Mathew J. Cherukara
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Science - Abstract
Abstract Understanding and interpreting dynamics of functional materials in situ is a grand challenge in physics and materials science due to the difficulty of experimentally probing materials at varied length and time scales. X-ray photon correlation spectroscopy (XPCS) is uniquely well-suited for characterizing materials dynamics over wide-ranging time scales. However, spatial and temporal heterogeneity in material behavior can make interpretation of experimental XPCS data difficult. In this work, we have developed an unsupervised deep learning (DL) framework for automated classification of relaxation dynamics from experimental data without requiring any prior physical knowledge of the system. We demonstrate how this method can be used to accelerate exploration of large datasets to identify samples of interest, and we apply this approach to directly correlate microscopic dynamics with macroscopic properties of a model system. Importantly, this DL framework is material and process agnostic, marking a concrete step towards autonomous materials discovery.
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- 2024
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41. A Geomagnetic Estimate of Heliospheric Modulation Potential over the Last 175 Years
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Owens, Mathew J., Barnard, Luke A., Muscheler, Raimund, Herbst, Konstantin, Lockwood, Mike, Usoskin, Ilya, and Asvestari, Eleanna
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- 2024
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42. Changing Landscape of Randomized Clinical Trials in Stroke: Explaining Contemporary Trial Designs and Methods
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Reeves, Mathew J., Gall, Seana, and Li, Linxin
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- 2024
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43. Elucidation of Relaxation Dynamics Beyond Equilibrium Through AI-informed X-ray Photon Correlation Spectroscopy
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Horwath, James P., Lin, Xiao-Min, He, Hongrui, Zhang, Qingteng, Dufresne, Eric M., Chu, Miaoqi, Sankaranarayanan, Subramanian K. R. S., Chen, Wei, Narayanan, Suresh, and Cherukara, Mathew J.
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Condensed Matter - Materials Science ,Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
Understanding and interpreting dynamics of functional materials \textit{in situ} is a grand challenge in physics and materials science due to the difficulty of experimentally probing materials at varied length and time scales. X-ray photon correlation spectroscopy (XPCS) is uniquely well-suited for characterizing materials dynamics over wide-ranging time scales, however spatial and temporal heterogeneity in material behavior can make interpretation of experimental XPCS data difficult. In this work we have developed an unsupervised deep learning (DL) framework for automated classification and interpretation of relaxation dynamics from experimental data without requiring any prior physical knowledge of the system behavior. We demonstrate how this method can be used to rapidly explore large datasets to identify samples of interest, and we apply this approach to directly correlate bulk properties of a model system to microscopic dynamics. Importantly, this DL framework is material and process agnostic, marking a concrete step towards autonomous materials discovery.
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- 2022
44. Explaining Optimisation of Offshore Wind Farms Using Metaheuristics
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Walter, Mathew J., Manikowski, Pawel L., Craven, Matthew J., Walker, David J., Kulkarni, Anand J., editor, and Gandomi, Amir H., editor
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- 2024
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45. A Case Report of a LVAD Driveline Infection Diagnosed by Point-of-care Ultrasound
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Bielawa, Nicholas, Cohen, Allison, Patel, Milan, Stankard, Brendon, and Nelson, Mathew J.
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left ventricular assist device ,driveline infection ,abscess ,point-of-care ultrasound ,case report - Abstract
Introduction: As the prevalence of patients with left ventricular assist devices (LVAD) presenting to the emergency department (ED) increases, clinicians must be aware of LVAD-associated infections.Case Report: A well-appearing, 41-year-old male with history of heart failure status post prior-LVAD placement presented to the ED for swelling of his chest. What appeared initially as a superficial infection was further assessed with point-of-care ultrasound and found to represent a chest wall abscess involving the driveline, ultimately resulting in sternal osteomyelitis and bacteremia.Conclusion: Point-of-care ultrasound should be considered an important tool in the initial assessment of potential LVAD-associated infection.
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- 2023
46. Multislice forward modeling of Coherent Surface Scattering Imaging on surface and interfacial structures
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Myint, Peco, Chu, Miaoqi, Tripathi, Ashish, Wojcik, Michael J., Zhou, Jian, Cherukara, Mathew J., Narayanan, Suresh, Wang, Jin, and Jiang, Zhang
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Physics - Computational Physics ,Physics - Optics - Abstract
To study nanostructures on substrates, surface-sensitive reflection-geometry scattering techniques such as grazing incident small angle x-ray scattering are commonly used to yield an averaged statistical structural information of the surface sample. Grazing incidence geometry can probe the absolute three-dimensional structural morphology of the sample if a highly coherent beam is used. Coherent Surface Scattering Imaging (CSSI) is a powerful yet non-invasive technique similar to Coherent X-ray Diffractive Imaging (CDI) but performed at small angles and grazing-incidence reflection geometry. A challenge with CSSI is that conventional CDI reconstruction techniques cannot be directly applied to CSSI because the Fourier-transform-based forward models cannot reproduce the dynamical scattering phenomenon near the critical angle of total external reflection of the substrate-supported samples. To overcome this challenge, we have developed a multislice forward model which can successfully simulate the dynamical or multi-beam scattering generated from surface structures and the underlying substrate. The forward model is also demonstrated to be able to reconstruct an elongated 3D pattern from a single shot scattering image in the CSSI geometry through fast-performing CUDA-assisted PyTorch optimization with automatic differentiation., Comment: 12 pages, 4 figures, 1 table
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- 2022
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47. Modelling Cosmic Radiation Events in the Tree-ring Radiocarbon Record
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Zhang, Qingyuan, Sharma, Utkarsh, Dennis, Jordan A., Scifo, Andrea, Kuitems, Margot, Buentgen, Ulf, Owens, Mathew J., Dee, Michael W., and Pope, Benjamin J. S.
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Astrophysics - Solar and Stellar Astrophysics ,Astrophysics - Earth and Planetary Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics ,Physics - Geophysics ,Physics - Space Physics - Abstract
Annually-resolved measurements of the radiocarbon content in tree-rings have revealed rare sharp rises in carbon-14 production. These 'Miyake events' are likely produced by rare increases in cosmic radiation from the Sun or other energetic astrophysical sources. The radiocarbon produced is not only circulated through the Earth's atmosphere and oceans, but also absorbed by the biosphere and locked in the annual growth rings of trees. To interpret high-resolution tree-ring radiocarbon measurements therefore necessitates modelling the entire global carbon cycle. Here, we introduce 'ticktack', the first open-source Python package that connects box models of the carbon cycle with modern Bayesian inference tools. We use this to analyse all public annual 14C tree data, and infer posterior parameters for all six known Miyake events. They do not show a consistent relationship to the solar cycle, and several display extended durations that challenge either astrophysical or geophysical models., Comment: Accepted Proceedings of the Royal Society A. 19 pages 6 figures body, 12 pages appendices which are supplementary material in the published version
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- 2022
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48. Deep learning at the edge enables real-time streaming ptychographic imaging
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Babu, Anakha V, Zhou, Tao, Kandel, Saugat, Bicer, Tekin, Liu, Zhengchun, Judge, William, Ching, Daniel J., Jiang, Yi, Veseli, Sinisa, Henke, Steven, Chard, Ryan, Yao, Yudong, Sirazitdinova, Ekaterina, Gupta, Geetika, Holt, Martin V., Foster, Ian T., Miceli, Antonino, and Cherukara, Mathew J.
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Computer Science - Machine Learning ,Electrical Engineering and Systems Science - Image and Video Processing - Abstract
Coherent microscopy techniques provide an unparalleled multi-scale view of materials across scientific and technological fields, from structural materials to quantum devices, from integrated circuits to biological cells. Driven by the construction of brighter sources and high-rate detectors, coherent X-ray microscopy methods like ptychography are poised to revolutionize nanoscale materials characterization. However, associated significant increases in data and compute needs mean that conventional approaches no longer suffice for recovering sample images in real-time from high-speed coherent imaging experiments. Here, we demonstrate a workflow that leverages artificial intelligence at the edge and high-performance computing to enable real-time inversion on X-ray ptychography data streamed directly from a detector at up to 2 kHz. The proposed AI-enabled workflow eliminates the sampling constraints imposed by traditional ptychography, allowing low dose imaging using orders of magnitude less data than required by traditional methods.
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- 2022
49. Twenty Years of Sustained Improvement in Quality of Care and Outcomes for Patients Hospitalized With Stroke or Transient Ischemic Attack: Data From The Get With The Guidelines-Stroke Program
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Xian, Ying, Li, Shen, Jiang, Tian, Beon, Chandler D., Poudel, Remy, Thomas, Kathie, Reeves, Mathew J., Smith, Eric E., Saver, Jeffrey L., Sheth, Kevin N., Messé, Steven R., Schwamm, Lee H., and Fonarow, Gregg C.
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- 2024
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50. Understanding optimisation processes with biologically-inspired visualisations
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Walter, Mathew J.
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Evolutionary Algorithms ,Machine Learning ,Explainable AI ,Visualisation ,Optimisation - Abstract
Evolutionary algorithms (EAs) constitute a branch of artificial intelligence utilised to evolve solutions to solve optimisation problems abound in industry and research. EAs often generate many solutions and visualisation has been a primary strategy to display EA solutions, given that visualisation is a multi-domain well-evaluated medium to comprehend extensive data. The endeavour of visualising solutions is inherent with challenges resulting from high dimensional phenomenons and the large number of solutions to display. Recently, scholars have produced methods to mitigate some of these known issues when illustrating solutions. However, one key consideration is that displaying the final subset of solutions exclusively (rather than the whole population) discards most of the informativeness of the search, creating inadequate insight into the black-box EA. There is an unequivocal knowledge gap and requirement for methods which can visualise the whole population of solutions from an optimiser and subjugate the high-dimensional problems and scaling issues to create interpretability of the EA search process. Furthermore, a requirement for explainability in evolutionary computing has been demanded by the evolutionary computing community, which could take the form of visualisations, to support EA comprehension much like the support explainable artificial intelligence has brought to artificial intelligence. In this thesis, we report novel visualisation methods that can be used to visualise large and high-dimensional optimiser populations with the aim of creating greater interpretability during a search. We consider the nascent intersection of visualisation and explainability in evolutionary computing. The potential high informativeness of a visualisation method from an early chapter of this work forms an effective platform to develop an explainability visualisation method, namely the population dynamics plot, to attempt to inject explainability into the inner workings of the search process. We further support the visualisation of populations using machine learning to construct models which can capture the characteristics of an EA search and develop intelligent visualisations which use artificial intelligence to potentially enhance and support visualisation for a more informative search process. The methods developed in this thesis are evaluated both quantitatively and qualitatively. We use multi-feature benchmark problems to show the method's ability to reveal specific problem characteristics such as disconnected fronts, local optima and bias, as well as potentially creating a better understanding of the problem landscape and optimiser search for evaluating and comparing algorithm performance (we show the visualisation method to be more insightful than conventional metrics like hypervolume alone). One of the most insightful methods developed in this thesis can produce a visualisation requiring less than 1% of the time and memory necessary to produce a visualisation of the same objective space solutions using existing methods. This allows for greater scalability and the use in short compile time applications such as online visualisations. Predicated by an existing visualisation method in this thesis, we then develop and apply an explainability method to a real-world problem and evaluate it to show the method to be highly effective at explaining the search via solutions in the objective spaces, solution lineage and solution variation operators to compactly comprehend, evaluate and communicate the search of an optimiser, although we note the explainability properties are only evaluated against the author's ability and could be evaluated further in future work with a usability study. The work is then supported by the development of intelligent visualisation models that may allow one to predict solutions in optima (importantly local optima) in unseen problems by using a machine learning model. The results are effective, with some models able to predict and visualise solution optima with a balanced F1 accuracy metric of 96%. The results of this thesis provide a suite of visualisations which aims to provide greater informativeness of the search and scalability than previously existing literature. The work develops one of the first explainability methods aiming to create greater insight into the search space, solution lineage and reproductive operators. The work applies machine learning to potentially enhance EA understanding via visualisation. These models could also be used for a number of applications outside visualisation. Ultimately, the work provides novel methods for all EA stakeholders which aims to support understanding, evaluation and communication of EA processes with visualisation.
- Published
- 2023
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