1. Sequence analysis of gene 3, gene 4 and gene 5 of avian infectious bronchitis virus strain CU-T2
- Author
-
Wei Jia and Syed Naqi
- Subjects
Membrane Protein Gene ,Genes, Viral ,Escherichia coli (E. coli) ,Homology (biology) ,Small membrane protein gene ,UTR, untranslated region ,bp, base pair(s) ,Gene cluster ,ORFS ,Cloning, Molecular ,aa, amino acid(s) ,Mass, Massachusetts ,Genetics ,sM, small membrane ,General Medicine ,ORF, open reading frame(s) ,Avian infectious bronchitis virus ,S, spike ,DNA, Complementary ,Sequence analysis ,Coronaviridae ,Infectious bronchitis virus ,Molecular Sequence Data ,IBV, infectious bronchitis virus ,kb, kilobase(s) or 1000 bp ,Biology ,Article ,Viral Matrix Proteins ,IBV ,Open Reading Frames ,Sequence Homology, Nucleic Acid ,Ark, Arkansas ,M, membrane ,Amino Acid Sequence ,Gene ,Viral Structural Proteins ,Recombinant DNA ,Base Sequence ,Membrane protein gene ,oligo, oligodeoxyribonucleotide ,Sequence Analysis, DNA ,biology.organism_classification ,Molecular biology ,Virus evolution ,Coronavirus ,Open reading frame ,nt, nucleotide(s) ,Cloning ,N, nucleocapsid - Abstract
We have previously reported the nucleotide sequences of gene 2 (spike (S) protein gene), gene 6 (nucleocapsid (N) protein gene), and the 3′ end untranslated region of a novel avian infectious bronchitis virus (IBV) strain, CU-T2 [Jia et al. (1995) Arch. Virol. 140, 259–271]. In the present report we describe the sequences of the remaining genes of this strain (gene 3, 4 and 5) with the exception of gene 1 (RNA polymerase gene). Gene 3 contained three open reading frames (ORFs), 3a, 3b and 3c of 174, 195 and 282 nucleotides (nt), respectively. Gene 4 (membrane (M) protein gene) consisted of 749 nt with a single ORF of 687 nt. Gene 5 contained two ORFs, 5a and 5b, with 198 and 249 nt, respectively. Thus, in total, there were 7349 nt from the 5′ end of S protein gene to the 3′ end of the CU-T2 genome. The overall nt sequence homologies between gene 3, 4, and 5 of CU-T2 and those of other strains were between 84.1–90.8%, 85.8–88.8% and 90.4–96.4%, respectively. The predicted amino acid (aa) sequence homologies revealed that gene 3b and 5b were more conserved than 3a, 3c and 5a. Each individual gene of CU-T2 strain (with the exception of the RNA polymerase gene) had a different level of homology with the homologous gene of other strains, suggesting that the evolution of IBV strains in general has been a complex, and as yet, poorly understood process. © 1997 Elsevier Science B.V. All rights reserved.
- Published
- 1997