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Clinical examination of three-dimensional image data of compound anatomical objects, such as complex joints, remains a tedious process, demanding the time and the expertise of physicians. For instance, automation of the segmentation task of the TMJ (temporomandibular joint) has been hindered by its compound three-dimensional shape, multiple overlaid textures, an abundance of surrounding irregularities in the skull, and a virtually omnidirectional range of the jaw's motion - all of which extend the manual annotation process to more than an hour per patient. To address the challenge, we invent a new angle to the 3D segmentation task: namely, we propose to segment empty spaces between all the tissues surrounding the object - the so-called negative volume segmentation. Our approach is an end-to-end pipeline that comprises a V-Net for bone segmentation, a 3D volume construction by inflation of the reconstructed bone head in all directions along the normal vector to its mesh faces. Eventually confined within the skull bones, the inflated surface occupies the entire "negative" space in the joint, effectively providing a geometrical/topological metric of the joint's health. We validate the idea on the CT scans in a 50-patient dataset, annotated by experts in maxillofacial medicine, quantitatively compare the asymmetry given the left and the right negative volumes, and automate the entire framework for clinical adoption., Comment: 20 pages, 5 main figures, 3 tables, 11 supplemental figures, supplementary material

This work takes inspiration from chemistry where the spectral characteristics of the molecules are determined by hybridization of electronic states evolving from the individual atomic orbitals. Based on analogy between quantum mechanics and the classical electrodynamics, we sorted dielectric microspheres with almost identical positions of their whispering gallery mode (WGM) resonances. Using these microspheres as classical photonic atoms, we assembled them in a wide range of structures including linear chains and planar photonic molecules. We studied WGM hybridization effects in such structures using side coupling by tapered microfibers as well as finite difference time domain modeling. We demonstrated that the patterns of WGM spectral splitting are representative of the symmetry, number of constituting atoms and topology of the photonic molecules which in principle can be viewed as "spectral signatures" of various molecules. We also show new ways of controlling WGM coupling constants in such molecules. Excellent agreement was found between measured transmission spectra and spectral signatures of photonic molecules predicted by simulation., Comment: This is the pre-peer reviewed version of the following article submitted to Laser Photonics Rev. on October 17, 2016. Revisions have been made in the published version. "Whispering gallery mode hybridization in photonic molecules", Y. Li, F. Abolmaali, K. W. Allen, N. I. Limberopoulos, A. Urbas, Y. Rakovich, A. V. Maslov, and V. N. Astratov, Laser Photonics Rev. DOI: 10.1002/lpor.201600278 (2017)