96 results on '"Masiarz, F"'
Search Results
2. Disulfide bonds of herpes simplex virus type 2 glycoprotein gB
- Author
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Norais, N, primary, Tang, D, additional, Kaur, S, additional, Chamberlain, S H, additional, Masiarz, F R, additional, Burke, R L, additional, and Marcus, F, additional
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- 1996
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3. Reconstituted nuclei depleted of a vertebrate GLFG nuclear pore protein, p97, import but are defective in nuclear growth and replication.
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Powers, M A, primary, Macaulay, C, additional, Masiarz, F R, additional, and Forbes, D J, additional
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- 1995
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4. The Hepatitis C Virus Encodes a Serine Protease Involved in Processing of the Putative Nonstructural Proteins from the Viral Polyprotein Precursor
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Eckart, M.R., primary, Selby, M., additional, Masiarz, F., additional, Lee, C., additional, Berger, K., additional, Crawford, K., additional, Kuo, C., additional, Kuo, G., additional, Houghton, M., additional, and Choo, Q.L., additional
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- 1993
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5. Mass spectrometric and Edman sequencing of lipocortin I isolated by two-dimensional SDS/PAGE of human melanoma lysates.
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Hall, S C, primary, Smith, D M, additional, Masiarz, F R, additional, Soo, V W, additional, Tran, H M, additional, Epstein, L B, additional, and Burlingame, A L, additional
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- 1993
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6. A rapid method for determination of endoproteinase substrate specificity: specificity of the 3C proteinase from hepatitis A virus.
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Petithory, J R, primary, Masiarz, F R, additional, Kirsch, J F, additional, Santi, D V, additional, and Malcolm, B A, additional
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- 1991
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7. The 21-kDa protein is a transformation-sensitive metalloproteinase inhibitor of chicken fibroblasts.
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Staskus, P W, primary, Masiarz, F R, additional, Pallanck, L J, additional, and Hawkes, S P, additional
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- 1991
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8. Yeast clathrin has a distinctive light chain that is important for cell growth.
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Silveira, L A, primary, Wong, D H, additional, Masiarz, F R, additional, and Schekman, R, additional
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- 1990
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9. Glucose oxidase from Aspergillus niger. Cloning, gene sequence, secretion from Saccharomyces cerevisiae and kinetic analysis of a yeast-derived enzyme.
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Frederick, K R, primary, Tung, J, additional, Emerick, R S, additional, Masiarz, F R, additional, Chamberlain, S H, additional, Vasavada, A, additional, Rosenberg, S, additional, Chakraborty, S, additional, Schopfer, L M, additional, and Schopter, L M, additional
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- 1990
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10. The human genes for hemophilia A and hemophilia B flank the X chromosome fragile site at Xq27.3.
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Purrello, M., Alhadeff, B., Esposito, D., Szabo, P., Rocchi, M., Truett, M., Masiarz, F., and Siniscalco, M.
- Abstract
Two DNA recombinant clones, shown by separate studies to contain DNA sequences homologous to the genes coding for the human blood coagulation Factors VIII and IX, were hybridized in situ to metaphases or prometaphases derived from patients with the fragile‐X syndrome and from a normal control. The results of these experiments indicate that (i) both genes are located in the subtelomeric region of the long arm of the human X chromosome flanking the fragile site at Xq27.3, (ii) the resolution of this localization is approximately 0.5% the length of the human haploid genome, i.e., 1.8 X 10(7) bp, (iii) the linear order of loci within the above region is Factor IX‐fragile site‐Factor VIII‐Xqter. Both the localization and the linear order of these loci have been confirmed by Southern blotting studies using the same molecular probes and a panel of rodent‐human somatic cell hybrids known to have retained different segments of the human X chromosome. The findings described herein and the knowledge that Factor IX deficiency recombines freely with at least two loci of the G6PD cluster support our hypothesis that the chromosomal region which includes the fragile‐X site is normally a region of high meiotic recombination.
- Published
- 1985
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11. Cleavage analysis of insulin-like growth factor (IGF)-dependent IGF-binding protein-4 proteolysis and expression of protease-resistant IGF-binding protein-4 mutants.
- Author
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Conover, C A, Durham, S K, Zapf, J, Masiarz, F R, and Kiefer, M C
- Abstract
Cultured human fibroblasts and osteoblast-like cells secrete an insulin-like growth factor (IGF)-dependent protease that cleaves IGF-binding protein-4 (IGFBP-4) into two fragments of approximately 18 and 14 kDa. Edman degradation of the isolated proteins established the amino termini of the reaction products. Sequence analysis of the 14-kDa carboxyl-terminal half of IGFBP-4 suggested cleavage after methionine at position 135 of the mature protein. Four variant IGFBP-4 molecules with single amino acid substitutions around this cleavage site were constructed and expressed. Wild-type and mutant IG-FBPs-4 bound IGF-I and IGF-II with equivalent affinities and, in the intact state, were equally effective inhibitors of IGF-I action. However, the IGFBP-4 mutants were relatively resistant to IGF-dependent proteolysis. A 5-6-h incubation in human fibroblast conditioned medium in the presence of IGF-II was sufficient for near total hydrolysis of wild-type IGFBP-4, whereas the mutant IGFBPs-4 were only minimally affected at this time. After a 24-h incubation with IGF-II, all mutant IGFBPs-4 showed extensive proteolysis, generating 18- and 14-kDa fragments. Pre-exposure of human fibroblasts in serum-free conditioned medium to IGF-II for 5 h potentiated subsequent IGF-I stimulation of DNA synthesis. When added with IGF-II, the protease-resistant mutant IG-FBPs-4, but not wild-type IGFBP-4, suppressed IGF-II enhancement of IGF-I-stimulated DNA synthesis. These biological studies suggest that the IGFBP-4/IGFBP-4 protease system may play a role modulating local cellular response to IGF-I.
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- 1995
12. Scrapie agent contains a hydrophobic protein.
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Prusiner, S B, McKinley, M P, Groth, D F, Bowman, K A, Mock, N I, Cochran, S P, and Masiarz, F R
- Abstract
The scrapie agent causes a degenerative nervous system disorder of sheep and goats. Considerable evidence indicates that the scrapie agent contains a protein that is necessary for infectivity [Prusiner, S. B., Groth, D. F., Cochran, S. P., Masiarz, F. R., McKinley, M. P. & Martinez, H. M. (1980) Biochemistry 19, 4883-4891], but direct demonstration of a protein moiety has been hampered by lack of sufficiently purified preparations. Employing preparations of the scrapie agent enriched 100- to 1000-fold with respect to protein, we found that digestion by proteinase K destroyed more than 99.9% of the infectivity. Diethylpyrocarbonate, which chemically modifies amino acid residues in proteins with high efficiency, also inactivated the scrapie agent in these purified preparations. Reductions of infectivity by proteinase K and diethylpyrocarbonate were not observed with less purified preparations. The agent bound to phenyl-Sepharose could not be eluted with 8.5 M ethylene glycol; however, a combination of ethylene glycol and detergents did release the agent. These observations provide good evidence for a protein and for hydrophobic domains within the scrapie agent. Whether the protein required for infectivity is the same protein responsible for the hydrophobic properties of the scrapie agent remains to be established.
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- 1981
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13. A signal peptide encoded within the precore region of hepatitis B virus directs the secretion of a heterogeneous population of e antigens in Xenopus oocytes.
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Standring, D N, Ou, J H, Masiarz, F R, and Rutter, W J
- Abstract
Using synthetic hepatitis B virus (HBV) mRNAs, we have shown that expression of HBV core-antigen gene sequences in Xenopus oocytes leads to the stable accumulation of 21-kDa cytoplasmic core protein (P21). In contrast, expression of precore plus core sequences leads mainly to the secretion of a heterogeneous population of proteins ranging in size from 15 to 22 kDa that collectively display viral e antigen (HBeAg) activity. We demonstrate that the precore region contains a cleavable 19 amino acid signal peptide that targets the precore proteins to the secretory pathway. The initial product of translocation (P22) is further processed during migration through the secretory pathway, apparently by a series of cleavage events at the arginine-rich carboxyl terminus, to yield multiple proteins of 15-18 kDa (P15-P18) that are secreted along with some P22. Our results indicate that serum HBeAg is generated by a signal peptide-mediated secretion event dependent on precore sequences.
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- 1988
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14. The granulin/epithelin precursor abrogates the requirement for the insulin-like growth factor 1 receptor for growth in vitro.
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Xu, S Q, Tang, D, Chamberlain, S, Pronk, G, Masiarz, F R, Kaur, S, Prisco, M, Zanocco-Marani, T, and Baserga, R
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3T3 cells null for the type 1 insulin-like growth factor receptor are refractory to stimulation by a variety of purified growth factors that are known to be required for the stimulation of other 3T3 cells. However, these cells, known as R- cells, grow in serum-supplemented medium and also in media conditioned by certain cell lines. We report here the purification of a growth factor that stimulates DNA synthesis (and growth) of R- cells. The growth factor, purified to homogeneity by SDS-polyacrylamide gel electrophoresis, was identified as the granulin/epithelin precursor by an accurate determination of the masses of endoproteinase Lys-C peptides using matrix-assisted laser desorption ionization mass spectrometry, followed by a data base search. The granulin/epithelin precursor is a little known growth factor, secreted by a variety of epithelial and hemopoietic cells. It is at present the only purified growth factor that can stimulate the growth of mouse embryo fibroblasts null for the type 1 insulin-like growth factor receptor.
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- 1998
15. Expression and processing of biologically active fibroblast growth factors in the yeast Saccharomyces cerevisiae.
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Barr, P J, Cousens, L S, Lee-Ng, C T, Medina-Selby, A, Masiarz, F R, Hallewell, R A, Chamberlain, S H, Bradley, J D, Lee, D, and Steimer, K S
- Abstract
Chemically synthesized genes for bovine and human fibroblast growth factors (FGFs) were expressed in heterologous microorganisms. Although the intracellular expression or secretion of acidic and basic FGFs in Escherichia coli or Saccharomyces cerevisiae yielded recombinant growth factors with high biological activity, the resulting proteins had structural microheterogeneity due to modified amino termini. Expression of amino-terminal extended forms of human acidic and basic FGFs in S. cerevisiae gave rise to soluble, but cell-associated polypeptides, with potent biological activity. These yeast-derived proteins were processed in vivo by removal of initiation codon-derived methionine residues and by amino-terminal acetylation. Both of these processes have been observed in mammalian tissues. The yeast systems described here, therefore, provide a good model system for the expression of FGFs as intracellular proteins, but more importantly they give high levels of authentically processed human FGFs with many potential medical applications. Since the recombinant proteins have all the biological activities of their native counterparts, their possible applications in wound healing, tissue grafting, nerve regeneration, and treatment of ischemia are discussed.
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- 1988
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16. Electrophoretic properties of the scrapie agent in agarose gels.
- Author
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Prusiner, S B, Groth, D F, Bildstein, C, Masiarz, F R, McKinley, M P, and Cochran, S P
- Abstract
The molecular properties of the scrapie agent were investigated by subjecting partially purified preparations to electrophoresis on agarose gels. When electrophoresis was performed at room temperature in the presence of sodium dodecyl sulfate (NaDodSO4), most of the recoverable agent was found at the top of the gel, consistent with previous studies indicating aggregation of the agent upon exposure to elevated temperatures. In addition, less than 5% of the agent applied to the gel was found after electrophoresis, even though the study was performed with a low concentration of NaDodSO4 (0.1%). Further studies on the inactivation of the agent by NaDodSO4 suggest that this may be, in part, a function of the NaDodSO4: protein ratio in the sample. In contrast, sodium N-lauroyl sarcosinate (Sarkosyl) did not inactivate the agent in concentrations as high as 5% (wt/vol). Virtually all of the infectivity could be recovered after electrophoresis of the agent into 0.6% agarose gels at 4 degrees C in the presence of 0.2% Sarkosyl. Digestion of the preparations with micrococcal nuclease and proteinase K prior to Sarkosyl electrophoresis caused a substantial portion of the agent to migrate ahead of DNA fragments of 1 x 10(6) daltons. The behavior of the scrapie agent in electrophoretic gels is consistent with earlier studies showing that the monomeric form of the agent has a sedimentation coefficient of less than or equal to 40 S. Thus, the smallest or monomeric form of the agent is smaller than any known animal virus.
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- 1980
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17. Alpha-factor-directed synthesis and secretion of mature foreign proteins in Saccharomyces cerevisiae.
- Author
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Brake, A J, Merryweather, J P, Coit, D G, Heberlein, U A, Masiarz, F R, Mullenbach, G T, Urdea, M S, Valenzuela, P, and Barr, P J
- Abstract
Saccharomyces cerevisiae cells were transformed with plasmids containing hybrid genes in which the sequence encoding mature human epidermal growth factor was joined to sequences encoding the leader region (preprosegment) of the precursor of the yeast mating pheromone alpha-factor. These cells accurately process the hybrid protein and efficiently secrete authentic biologically active human epidermal growth factor into the medium.
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- 1984
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18. Expression of cell-associated and secreted forms of herpes simplex virus type 1 glycoprotein gB in mammalian cells
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Pachl, C, Burke, R L, Stuve, L L, Sanchez-Pescador, L, Van Nest, G, Masiarz, F, and Dina, D
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The gene for glycoprotein gB1 of herpes simplex virus type 1 strain Patton was expressed in stable Chinese hamster ovary cell lines. Expression vectors containing the dihydrofolate reductase (dhfr) cDNA plus the complete gB1 gene or a truncated gene lacking the 194 carboxyl-terminal amino acids of gB1 were transfected into CHO DHFR-deficient cells. Radioimmunoprecipitation demonstrated that the complete gB1 protein expressed in CHO cell lines was cell associated, whereas the truncated protein was secreted from the cells due to deletion of the transmembrane and C-terminal domains of gB1. Cells expressing the truncated gB1 protein were subjected to stepwise methotrexate selection, and a cell line was isolated in which the gB1 gene copy number had been amplified 10-fold and the level of expression of gB1 had increased over 60-fold. The truncated gB1 protein was purified from medium conditioned by the amplified cell line. N-terminal amino acid sequence analysis of this purified protein identified the signal peptide cleavage site and predicted the cleavage of a 30-amino-acid signal sequence from the primary protein. The immunogenicity of the truncated gB1 protein was also tested in mice, and high levels of antibody and protection from virus challenge were observed.
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- 1987
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19. Isolation and characterization of the Bacillus subtilis sigma 28 factor
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Helmann, J D, Masiarz, F R, and Chamberlin, M J
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RNA polymerase preparations isolated from vegetatively growing Bacillus subtilis cells contain the core subunits beta, beta', and alpha, together with multiple sigma factors and other core-associated polypeptides such as delta, omega 1, and omega 2. We have developed an improved, large-scale purification procedure that yields RNA polymerase fractions enriched in both the sigma 28 and delta proteins. These fractions have been used to isolate sigma 28 protein for biochemical characterization and for preparation of highly specific anti-sigma 28 antisera. The amino acid composition of purified sigma 28 protein and the amino acid sequences of tryptic peptide fragments have been determined. Anti-sigma 28 antisera specifically inhibit transcription by the purified sigma 28 -dependent RNA polymerase, yet do not affect transcription by sigma 43 -dependent RNA polymerase. Immunochemical analysis confirms that the sigma 28 protein copurifies with total RNA polymerase activity through the majority of the purification procedure and allows the steps when sigma 28 protein is lost to be identified and optimized. Immunochemical techniques have also been used to monitor the structure and abundance of the sigma 28 protein in vivo. A single form of antibody-reactive protein was detected by two-dimensional gel electrophoresis-isoelectric focusing. Its abundance corresponds to a maximal content of 220 molecules of sigma 28 per B. subtilis cell during late-logarithmic-phase growth.
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- 1988
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20. Resolution of the two components of macrophage inflammatory protein 1, and cloning and characterization of one of those components, macrophage inflammatory protein 1 beta.
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Sherry, B, Tekamp-Olson, P, Gallegos, C, Bauer, D, Davatelis, G, Wolpe, S D, Masiarz, F, Coit, D, and Cerami, A
- Abstract
A number of macrophage-derived mediators have been implicated in the vascular changes of inflammation. We recently reported the isolation of a novel monokine, macrophage inflammatory protein 1 (MIP-1), which causes local inflammatory responses in vivo, and induces superoxide production by neutrophils in vitro. Purified native MIP-1 comprises two peptides with very similar physical characteristics. We report here the resolution of MIP-1 into component peptides by SDS-hydroxylapatite chromatography, and compare the NH2-terminal sequences of the two peptides, now referred to as MIP-1 alpha and MIP-1 beta. A synthetic oligonucleotide probe pool corresponding to the NH2-terminal amino acid sequence of MIP-1 beta was used to isolate a cDNA clone containing its coding sequence. The sequence codes for a 109 amino acid-long polypeptide, of which 69 amino acids correspond to the mature product. Comparison of this MIP-1 beta cDNA with our previously cloned MIP-1 alpha sequence reveals that the MIP-1 peptides, members of a growing family of potential inflammatory mediators, are distinct but highly homologous (58.9% sequence identity) products of different genes.
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- 1988
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21. "Behavior Induction" or "Memory Transfer"
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Corson, J. A., primary, Golub, A. M., additional, Masiarz, F. R., additional, Villars, T., additional, and McConnell, J. V., additional
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- 1970
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22. Hepatitis G virus encodes protease activities which can effect processing of the virus putative nonstructural proteins.
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Belyaev AS, Chong S, Novikov A, Kongpachith A, Masiarz FR, Lim M, and Kim JP
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- Amino Acid Sequence, Baculoviridae genetics, Binding Sites genetics, Endopeptidases genetics, Flaviviridae enzymology, Flaviviridae genetics, Humans, Molecular Sequence Data, Mutation, Oligodeoxyribonucleotides genetics, Protein Processing, Post-Translational, Recombinant Proteins genetics, Recombinant Proteins metabolism, Viral Nonstructural Proteins genetics, Endopeptidases metabolism, Flaviviridae metabolism, Viral Nonstructural Proteins metabolism
- Abstract
The genome of a recently identified virus, hepatitis G virus (HGV), shows considerable homology to hepatitis C virus (HCV). Two HGV proteases similar to nonstructural proteins NS2 and NS3 of HCV were identified, and their cleavage site specificity was investigated. Amino acids essential for the protease activities were determined by mutation analysis. NS4A of HGV was demonstrated to be a cofactor for NS3-mediated proteolysis, with a region critical for activity residing between Leu1561, and Ala1598.
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- 1998
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23. Multiple forms of an inositol polyphosphate 5-phosphatase form signaling complexes with Shc and Grb2.
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Kavanaugh WM, Pot DA, Chin SM, Deuter-Reinhard M, Jefferson AB, Norris FA, Masiarz FR, Cousens LS, Majerus PW, and Williams LT
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- Amino Acid Sequence, Animals, B-Lymphocytes, Base Sequence, Caenorhabditis elegans, Cell Line, Transformed, Chlorocebus aethiops, Cloning, Molecular, ErbB Receptors genetics, GRB2 Adaptor Protein, Humans, Inositol Polyphosphate 5-Phosphatases, Lymphocyte Activation, Molecular Sequence Data, Phosphatidylinositol-3,4,5-Trisphosphate 5-Phosphatases, Phosphoric Monoester Hydrolases genetics, Proteins genetics, Rabbits, Signal Transduction, Adaptor Proteins, Signal Transducing, ErbB Receptors metabolism, Phosphoric Monoester Hydrolases metabolism, Proteins metabolism
- Abstract
Background: Shc and Grb2 form a complex in cells in response to growth factor stimulation and link tyrosine kinases to Ras during the resulting signaling process. Shc and Grb2 each contain domains that mediate interactions with other unidentified intracellular proteins. For example, the Shc PTB domain binds to 130 kDa and 145 kDa tyrosine-phosphorylated proteins in response to stimulation of cells by growth factors, cytokines and crosslinking of antigen receptors. The Grb2 SH3 domains bind to an unidentified 116 kDa protein in T cells. We have identified three proteins, of 110 kDa, 130 kDa and 145 kDa, as a new family of molecules encoded by the same gene. In vivo studies show that these proteins form signal transduction complexes with Shc and with Grb2., Results: The 130 kDa and 145 kDa tyrosine-phosphorylated proteins that associate with the Shc PTB domain were purified by conventional chromatographic methods. Partial peptide and cDNA sequences corresponding to these proteins, termed SIP-145 and SIP-130 (SIP for signaling inositol polyphosphate 5-phosphatase), identified them as SH2 domain-containing products of a single gene and as members of the inositol polyphosphate 5-phosphatase family. The SIP-130 and SIP-145 proteins and inositol polyphosphate 5-phosphatase activity associated with Shc in vivo in response to B-cell activation. By using an independent approach, expression cloning, we found that the Grb2 SH3 domains bind specifically to SIP-110, a 110 kDa splice variant of SIP-145 and SIP-130, which lacks the SH2 domain. The SIP proteins hydrolyzed phosphatidylinositol (3,4,5)-trisphosphate (PtdIns (3,4,5)-P3) and Ins (1,3,4,5)-P4, but not PtdIns (4,5)-P2 or Ins (1,4,5)-P3., Conclusions: These findings strongly implicate the inositol polyphosphate 5-phosphatases in Shc- and Grb2-mediated signal transduction. Furthermore, SIP-110, SIP-130 and SIP-145 prefer 3-phosphorylated substrates, suggesting a link to the phosphatidylinositol 3-kinase signaling pathway.
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- 1996
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24. Differential subcellular localization of hepatitis C virus core gene products.
- Author
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Lo SY, Masiarz F, Hwang SB, Lai MM, and Ou JH
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- Amino Acid Sequence, Amino Acids analysis, Animals, Base Sequence, Cell Line, DNA Primers, Fluorescent Antibody Technique, Haplorhini, Humans, Molecular Sequence Data, Viral Core Proteins chemistry, Viral Core Proteins genetics, Cell Nucleus metabolism, Endoplasmic Reticulum metabolism, Hepacivirus metabolism, Viral Core Proteins metabolism
- Abstract
The expression of the core gene of two different hepatitis C virus (HCV) isolates was analyzed. In the presence of its downstream E1 envelope protein sequence, two major core protein products with molecular masses of 21 kDa (P21) and 19 kDa (P19) and a minor protein product with molecular mass of 16 kDa (P16) were detected. In the absence of its downstream E1 envelope protein sequence, P21 and P19 remained the major protein products expressed from the core gene of the HCV-RH isolate, whereas P16 became the major protein product of the core gene of the HCV-1 isolate. Analysis of the amino-terminal sequences of P21 and P16 expressed in Escherichia coli revealed that P21 and P16 were co-amino terminal. Deletion-mapping analysis indicated that P16 lacked the carboxy-terminal sequence of P21. Immunofluorescence analysis of the subcellular localization of different HCV core proteins indicated that P21 and P19 displayed a reticular and punctate staining pattern typical of endoplasmic reticulum-associated proteins, while P16 was localized to the nucleus. The distinct subcellular localization of P16 raises the possibility that P16 may have a biological function very different from those of P21 and P19.
- Published
- 1995
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25. Identification and characterization of human tissue inhibitor of metalloproteinase-3 and detection of three additional metalloproteinase inhibitor activities in extracellular matrix.
- Author
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Kishnani NS, Staskus PW, Yang TT, Masiarz FR, and Hawkes SP
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- Adenocarcinoma pathology, Amino Acid Sequence, Animals, Cells, Cultured, Chick Embryo, Colonic Neoplasms pathology, Extracellular Matrix Proteins pharmacology, Fibroblasts chemistry, Fibrosarcoma pathology, HeLa Cells chemistry, Humans, Ileal Neoplasms pathology, Ileocecal Valve, Mice, Molecular Sequence Data, Molecular Weight, Neoplasm Proteins chemistry, Neoplasm Proteins pharmacology, Neuroblastoma pathology, Organ Specificity, Rats, Sequence Alignment, Sequence Homology, Amino Acid, Tissue Inhibitor of Metalloproteinase-3, Tumor Cells, Cultured, Extracellular Matrix Proteins isolation & purification, Metalloendopeptidases antagonists & inhibitors, Neoplasm Proteins isolation & purification
- Abstract
We have identified and characterized a novel human tissue inhibitor of metalloproteinase (TIMP). It is found exclusively in the extracellular matrix of a large number of cultured human cells, including: primary embryonal kidney (293), neuroblastoma (SK-N-SH), normal whole embryo (FHs 173We), cervical carcinoma (HeLa S3), colon adenocarcinoma (Caco-2), ileocecal adenocarcinoma (HCT-8), fibrosarcomas (SW 684 and Hs 913T) and normal gingival fibroblasts (GF11 and 1292). It was not detected in the conditioned media from any of these cell lines. Its apparent molecular mass of 24-25 kDa, as determined by its migration on protease-substrate gels, is intermediate between TIMP-1 (28.5 kDa) and TIMP-2 (21 kDa). Like the latter two proteins, human TIMP-3 contains intrachain disulfide bonds and displays altered electrophoretic mobility in the presence of beta-mercaptoethanol. The N-terminal, amino acid sequence of the protein is identical to that of chicken TIMP-3 (ChIMP-3), and its amino acid composition is similar. The protein is not N-glycosylated, as determined by treatment with N-glycosidase-F. Finally, it is recognized by antisera raised against pure ChIMP-3 but not by anti-human TIMP-1 or anti-human TIMP-2 antibodies. Based on these properties, we propose that this protein is TIMP-3 and is the human counterpart of ChIMP-3 (Pavloff et al., J. Biol. Chem. 267: 17321-17326, 1992). Two additional inhibitors detected in the matrix of human cell lines, designated inhibitor of metalloproteinase (IMP)-a and IMP-b, migrate with apparent masses of 29 kDa and 30 kDa. Both are N-glycosylated. A fourth inhibitor activity, which is smaller in mass than TIMP-3 and is also pecifically located in the matrix, is detectable in some cell lines.
- Published
- 1995
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26. Complex processing and protein:protein interactions in the E2:NS2 region of HCV.
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Selby MJ, Glazer E, Masiarz F, and Houghton M
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- Amino Acid Sequence, Cell Line, DNA, Complementary, Glycoside Hydrolases, Molecular Sequence Data, Precipitin Tests, Protein Binding, Protein Precursors metabolism, RNA, Viral genetics, Sequence Analysis, Templates, Genetic, Viral Envelope Proteins genetics, Viral Nonstructural Proteins genetics, Hepacivirus metabolism, Protein Processing, Post-Translational, Viral Envelope Proteins metabolism, Viral Nonstructural Proteins metabolism
- Abstract
Hepatitis C virus (HCV), the principal cause of parenteral non-A, non-B hepatitis, is an RNA virus and a member of the Flaviviridae family. Its genome is translated into a single polyprotein that is processed co- and post-translationally into both structural and nonstructural (NS) proteins. There are three putative structural proteins, consisting of the nucleocapsid protein and two envelope glycoproteins, E1 and E2. Analysis of transient transfections of serially extended templates covering the E2/NS2 region provided evidence for three E2 species with distinct C-termini. One form is E2 terminating at amino acid 729, while the larger two species represent fusions with the downstream NS2A and NS2A/NS2B proteins terminating at amino acids 809 and 1026, respectively. Using the same E2 templates, we defined a region of E2 important for co-immunoprecipitation of E1 and observed that this region also prevents E2 secretion. The N-terminus of NS2B was determined by radiosequencing and a novel association of NS2B and probable NS4B with E2 was observed; the regions of NS2B and E2 important for this association have been mapped. These data indicate that complex processing and protein:protein interactions occur during HCV morphogenesis.
- Published
- 1994
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27. Herpes simplex virus glycoprotein D acquires mannose 6-phosphate residues and binds to mannose 6-phosphate receptors.
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Brunetti CR, Burke RL, Kornfeld S, Gregory W, Masiarz FR, Dingwell KS, and Johnson DC
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- Amino Acid Sequence, Animals, Cell Line, Humans, Membrane Glycoproteins metabolism, Molecular Sequence Data, Molecular Weight, Protein Binding, Solubility, Structure-Activity Relationship, Herpesvirus 1, Human metabolism, Mannosephosphates metabolism, Receptor, IGF Type 2 metabolism, Receptors, Virus metabolism, Viral Envelope Proteins metabolism
- Abstract
Herpes simplex viruses (HSV) use multiple and sequential receptors to enter host cells. HSV glycoprotein D (gD) has been implicated in binding to cellular receptors that facilitate virus penetration into cells. We used soluble forms of gD that were expressed in Chinese hamster ovary cells to characterize and identify a putative cellular receptor for HSV as the 275-kDa mannose 6-phosphate/insulin-like growth factor II receptor. Soluble gD also bound to the 46-kDa cation-dependent mannose 6-phosphate (Man-6-P) receptor and was extensively modified with Man-6-P residues on its Asn-linked oligosaccharides. Additionally, soluble gD was a high affinity substrate for N-acetylglucosamine-1-phosphotransferase, the first enzyme in the biosynthetic pathway for the addition of Man-6-P residues to lysosomal enzymes. The membrane form of gD immunoprecipitated from HSV-infected cells also bound to the 275-kDa mannose 6-phosphate/insulin-like growth factor II receptor, albeit poorly, and only a small fraction of the membrane gD was modified with Man-6-P. Notwithstanding this low level of mannose phosphorylation, the interaction between gD and Man-6-P receptors may play a role in some aspect of virus entry or egress.
- Published
- 1994
28. Rapid determination of endoprotease specificity using peptide mixtures and Edman degradation analysis.
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Masiarz FR and Malcolm BA
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- Amino Acid Sequence, Chromatography, High Pressure Liquid, Hydrolysis, Isothiocyanates, Kinetics, Molecular Sequence Data, Peptides chemistry, Thiocyanates, Endopeptidases metabolism, Peptides metabolism, Sequence Analysis methods, Substrate Specificity
- Published
- 1994
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29. Association of the APC gene product with beta-catenin.
- Author
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Rubinfeld B, Souza B, Albert I, Müller O, Chamberlain SH, Masiarz FR, Munemitsu S, and Polakis P
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- Adenomatous Polyposis Coli Protein, Amino Acid Sequence, Antibodies, Cell Adhesion, Cell Line, Colonic Neoplasms genetics, Cytoskeletal Proteins chemistry, Cytoskeletal Proteins isolation & purification, Humans, Molecular Sequence Data, Neoplasm Proteins genetics, Neoplasm Proteins immunology, Precipitin Tests, Tumor Cells, Cultured, beta Catenin, Cadherins metabolism, Colonic Neoplasms metabolism, Cytoskeletal Proteins metabolism, Genes, APC, Neoplasm Proteins metabolism, Trans-Activators
- Abstract
Mutations in the human APC gene are linked to familial adenomatous polyposis and to the progression of sporadic colorectal and gastric tumors. To gain insight into APC function, APC-associated proteins were identified by immunoprecipitation experiments. Antibodies to APC precipitated a 95-kilodalton protein that was purified and identified by sequencing as beta-catenin, a protein that binds to the cell adhesion molecule E-cadherin. An antibody specific to beta-catenin also recognized the 95-kilodalton protein in the immunoprecipitates. These results suggest that APC is involved in cell adhesion.
- Published
- 1993
- Full Text
- View/download PDF
30. Recombinant human insulin-like growth factor binding proteins 4, 5, and 6: biological and physiochemical characterization.
- Author
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Kiefer MC, Schmid C, Waldvogel M, Schläpfer I, Futo E, Masiarz FR, Green K, Barr PJ, and Zapf J
- Subjects
- Amino Acid Sequence, Amino Acids analysis, Base Sequence, Blotting, Western, Carrier Proteins chemistry, Carrier Proteins immunology, Cells, Cultured, Cross Reactions, DNA biosynthesis, Humans, Insulin-Like Growth Factor Binding Protein 4, Insulin-Like Growth Factor Binding Protein 5, Insulin-Like Growth Factor Binding Protein 6, Insulin-Like Growth Factor I antagonists & inhibitors, Insulin-Like Growth Factor II antagonists & inhibitors, Molecular Sequence Data, Polymerase Chain Reaction, Recombinant Proteins chemistry, Recombinant Proteins immunology, Recombinant Proteins metabolism, Carrier Proteins metabolism, Insulin-Like Growth Factor I metabolism, Insulin-Like Growth Factor II metabolism
- Abstract
We have recently cloned cDNAs encoding human insulin-like growth factor binding proteins (IGFBP)-4, -5 and -6 and have now expressed these BPs in yeast as ubiquitin (Ub)-IGFBP fusion proteins. Western ligand blotting with 125I-IGF II under nonreducing conditions of recombinant human (rh) IGFBP-containing yeast lysates revealed specific binding bands for IGFBP-4, -5, and -6 at apparent molecular masses of 24-26, 30-32, and 24-26 kDa, respectively, indicating expression and processing of the fusion proteins. HPLC purified rhIGFBPs had virtually the same amino acid composition, amino acid number, and NH2-terminal sequences as the native BPs. Rabbit antiserum directed against each rhIGFBP-4, -5 and -6 reacted specifically with the respective rhIGFBP as well as with the native human counterpart and displayed very low cross-reactivity with other IGFBPs. Except for the affinity of rhIGFBP-6 for IGF I (Ka = 8.5 x 10(8) M-1), the affinity constants of the three IGFBPs for IGF I and II lie between 1.7 and 3.3 x 10(10) M-1. When present in excess, rhIGFBP-4, -5, and -6 inhibited IGF I- and II-stimulated DNA and glycogen synthesis in human osteoblastic cells, although rh-IGFBP-6 had only a weak inhibitory effect on IGF I in agreement with its relatively lower IGF I affinity constant.
- Published
- 1993
31. Characterization of recombinant human insulin-like growth factor binding proteins 4, 5, and 6 produced in yeast.
- Author
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Kiefer MC, Schmid C, Waldvogel M, Schläpfer I, Futo E, Masiarz FR, Green K, Barr PJ, and Zapf J
- Subjects
- Amino Acid Sequence, Amino Acids analysis, Base Sequence, Binding, Competitive, Carrier Proteins chemistry, Carrier Proteins genetics, Cell Line, Chromatography, High Pressure Liquid, Cloning, Molecular, DNA, Gene Expression, Genetic Vectors, Glycogen biosynthesis, Humans, Insulin-Like Growth Factor Binding Protein 4, Insulin-Like Growth Factor Binding Protein 5, Insulin-Like Growth Factor Binding Protein 6, Insulin-Like Growth Factor Binding Proteins, Molecular Sequence Data, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Saccharomyces cerevisiae genetics, Carrier Proteins metabolism, Somatomedins metabolism
- Abstract
The insulin-like growth factor binding protein (IGFBP) family comprises six structurally distinct, but highly homologous proteins. They have been identified in serum and other biological fluids, tissue extracts, and cell culture media. We have recently cloned cDNAs encoding human IGFBP-4, -5, and -6 and have now expressed these BPs in yeast as ubiquitin (Ub)-IGFBP fusion proteins. Western ligand blotting with 125I-IGF II under nonreducing conditions of recombinant human (rh) IGFBP-containing yeast lysates revealed specific binding bands for IGFBP-4, -5, and -6 at apparent molecular masses of 24-26, 30-32, and 24-26 kDa, respectively, indicating processing of the fusion proteins. High-performance liquid chromatography-purified rhIGFBPs had virually the same amino acid composition, amino acid number, and NH2-terminal sequences as the native BPs. Except for the affinity of rhIGFBP-6 for IGF I (Ka = 8.5 x 10(8) M-1), the affinity constants of the three IGFBPs for IGF I and II lie between 1.7 and 3.3 x 10(10) M-1, i.e. 25-100 times higher than the IGF I and II affinities of the type I IGF receptor. When present in excess, rhIGFBP-4, -5, and -6 inhibited IGF I- and II-stimulated DNA and glycogen synthesis in human osteoblastic cells, but rhIGFBP-6 had only a weak inhibitory effect on IGF I in agreement with its relatively lower IGF I affinity constant. The results of this study show that the primary effect of the three rhIGFBPs is the attenuation of IGF activity and suggest that IGFBPs contribute to the control of IGF-mediated cell growth and metabolism.
- Published
- 1992
32. Amino acid sequence of fibrolase, a direct-acting fibrinolytic enzyme from Agkistrodon contortrix contortrix venom.
- Author
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Randolph A, Chamberlain SH, Chu HL, Retzios AD, Markland FS Jr, and Masiarz FR
- Subjects
- Amino Acid Sequence, Amino Acids analysis, Animals, Cyanogen Bromide, Endopeptidases metabolism, Genetic Variation, Metalloendopeptidases metabolism, Molecular Sequence Data, Peptides chemistry, Protein Structure, Secondary, Sequence Analysis, Sequence Homology, Amino Acid, Snakes, Crotalid Venoms enzymology, Metalloendopeptidases chemistry
- Abstract
The complete amino acid sequence of fibrolase, a fibrinolytic enzyme from southern copperhead (Agkistrodon contortrix contortrix) venom, has been determined. This is the first report of the sequence of a direct-acting, nonhemorrhagic fibrinolytic enzyme found in snake venom. The majority of the sequence was established by automated Edman degradation of overlapping peptides generated by a variety of selective cleavage procedures. The amino-terminus is blocked by a cyclized glutamine (pyroglutamic acid) residue, and the sequence of this region of the molecule was determined by mass spectrometry. Fibrolase is composed of 203 residues in a single polypeptide chain with a molecular weight of 22,891, as determined by the sequence. Its sequence is homologous to the sequence of the hemorrhagic toxin Ht-d of Crotalus atrox venom and with the sequences of two metalloproteinases from Trimeresurus flavoviridis venom. Microheterogeneity in the sequence was found at both the amino-terminus and at residues 189 and 192. All six cysteine residues in fibrolase are involved in disulfide bonds. A disulfide bond between cysteine-118 and cysteine-198 has been established and bonds between cysteines-158/165 and between cysteines-160/192 are inferred from the homology to Ht-d. Secondary structure prediction reveals a very low percentage of alpha-helix (4%), but much greater beta-structure (39.5%). Analysis of the sequence reveals the absence of asparagine-linked glycosylation sites defined by the consensus sequence: asparagine-X-serine/threonine.
- Published
- 1992
- Full Text
- View/download PDF
33. Identification and molecular cloning of two new 30-kDa insulin-like growth factor binding proteins isolated from adult human serum.
- Author
-
Kiefer MC, Masiarz FR, Bauer DM, and Zapf J
- Subjects
- Amino Acid Sequence, Base Sequence, Carrier Proteins immunology, Carrier Proteins metabolism, Cloning, Molecular, DNA genetics, Humans, Insulin-Like Growth Factor Binding Protein 5, Molecular Sequence Data, Molecular Weight, Oligonucleotides chemistry, Polymerase Chain Reaction, Carrier Proteins genetics, Somatomedins metabolism
- Abstract
Three insulin-like growth factor binding proteins (IGFBP) with apparent molecular masses of 24, 28-30, and 30 kDa, nonreduced, have been isolated from human serum. The 15 NH2-terminal amino acids of the 24-kDa binding protein are identical with those of the 30-kDa BP. The apparent molecular mass of the latter is reduced to 24 kDa by N-glycanase, suggesting that the 30-kDa BP is the glycosylated form of the isolated 24-kDa BP. The complete amino acid sequences derived from the cloned cDNAs represent two new IGFBPs. They are tentatively termed IGFBP-4 and -5. The prepeptide sequences of BP-4 and -5 contain 27 and 21, the mature proteins 213 and 237 amino acids, respectively (Mr = 22,610 and 25,980). The NH2- and COOH-terminal thirds of BP-4 and -5 display pronounced homology to the other three human BPs. 16 of the 16-20 cysteines and 37 of the 213-289 amino acids (12.8-17.1%) are conserved in all five mature BPs. 10 amino acid positions located in the NH2-terminal region and shared by BP-1, -2, -3, and -5 are different in BP-4. These differences may account for the preferential affinity of BP-4 for IGF II. A most intriguing homology exists between the COOH-terminal quarter of the five IGFBPs, 10 repetitive domains of human thyroglobulin, a gastrointestinal tumor-associated antigen, and the invariant chain of the class II histocompatibility antigen. The cDNAs of five human IGFBPs are now available. They will allow their expression and production in sufficient quantities for in vivo studies to unravel their role in growth and metabolism.
- Published
- 1991
34. Plant thioredoxin h: an animal-like thioredoxin occurring in multiple cell compartments.
- Author
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Marcus F, Chamberlain SH, Chu C, Masiarz FR, Shin S, Yee BC, and Buchanan BB
- Subjects
- Amino Acid Sequence, Binding Sites, Cell Compartmentation, Chromatography, High Pressure Liquid, Molecular Sequence Data, Plants, Sequence Homology, Nucleic Acid, Thioredoxin h, Trypsin, Plant Proteins analysis
- Abstract
Thioredoxin h has been purified to electrophoretic homogeneity from spinach roots using a procedure devised for leaves. The root thioredoxin (h2 form) differed from chloroplast and animal thioredoxins in showing an atypical active site (Cys-Ala-Pro-Cys) but otherwise resembled animal thioredoxin in structure. Sequence data for a total of 72 residues of spinach root thioredoxin h2 (about 69% of the primary structure) showed 43-44% identity with rabbit and rat thioredoxin. Analysis of cell fractions from the endosperm of germinating castor beans revealed that thioredoxin h occurs in the cytosol, endoplasmic reticulum, and mitochondria. The present findings demonstrate a similarity between plant thioredoxin h and animal thioredoxins in structure and intracellular location and raise the question of whether these proteins have similar functions.
- Published
- 1991
- Full Text
- View/download PDF
35. Structure determination of O-linked glycopeptides by tandem mass spectrometry.
- Author
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Medzihradszky KF, Gillece-Castro BL, Settineri CA, Townsend RR, Masiarz FR, and Burlingame AL
- Subjects
- Amino Acid Sequence, Humans, Mass Spectrometry, Molecular Sequence Data, Peptide Fragments, Staphylococcus aureus, alpha-Fetoproteins, Glycopeptides analysis
- Abstract
A new method for characterizing O-linked glycopeptides without chemical degradation is presented. Collision-induced dissociation (CID) analysis of intact O-linked glycopeptides containing mono- and disaccharides was performed. For glycopeptides containing one hexose unit, both the peptide sequence and the site of attachment of the sugar moiety were obtained from a single high-energy CID spectrum. However, in a glycopeptide bearing multiple sugar residues per site, the CID spectrum was dominated by fragments resulting from cleavages of the carbohydrate substituents and the gas-phase deglycosylated peptide, thus obviating the concomitant observation of peptide sequence ions. Hence, information on the structures of the carbohydrate substituents was obtained, but not on the sites of attachment of these residues to the peptide. Subsequent CID analysis of the gas-phase deglycosylated peptide ion can be used to obtain the sequence of the peptide backbone from the same sample. This method holds promise for simultaneously determining the carbohydrate structure and the peptide sequence of intact O-linked glycopeptides without chemical degradation.
- Published
- 1990
- Full Text
- View/download PDF
36. Characterization of O-glycosylation sites in recombinant B-chain of platelet-derived growth factor expressed in yeast using liquid secondary ion mass spectrometry, tandem mass spectrometry and Edman sequence analysis.
- Author
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Settineri CA, Medzihradszky KF, Masiarz FR, Burlingame AL, Chu C, and George-Nascimento C
- Subjects
- Amino Acid Sequence, Carbohydrates analysis, Chromatography, High Pressure Liquid, Gene Expression, Humans, Hydrolysis, Mass Spectrometry, Molecular Sequence Data, Platelet-Derived Growth Factor genetics, Proto-Oncogene Proteins genetics, Proto-Oncogene Proteins c-sis, Recombinant Proteins analysis, Saccharomyces cerevisiae metabolism, Serine Endopeptidases, Trypsin, Platelet-Derived Growth Factor analysis, Proto-Oncogene Proteins analysis
- Abstract
High-performance tandem mass spectrometry has been employed to structurally characterize intact O-linked glycopeptides and establish the complexity and extent of glycosylation for recombinant human platelet-derived growth factor B chain (rhPDGF-B) expressed in yeast. In addition, liquid secondary ion mass spectrometry (LSIMS) and Edman degradation have been employed to verify the protein sequence. LSIMS of high-performance liquid chromatographically fractionated proteolytic digests confirmed the complete amino acid sequence predicted by the human PDGF-B gene structure. Potential glycopeptides (as indicated by a mass shift of 162 or 324 Da from the mass of a predicted cleavage product) were sequenced using tandem mass spectrometry and Edman degradation. Ultraviolet matrix laser desorption mass spectrometry of rhPDGF-B dimer was used to determine the molecular weight distribution for the intact recombinant glycoprotein. In addition to the presence of unmodified peptides, corresponding peptides bearing monomannosyl moieties were found on serine 26 and threonines 20, 63, 88, 90 and 101. Further, dimannosyl moieties were found on threonines 6 and 63. These data reveal the presence of O-linked glycosylation at sites which do not fortify the concept of a consensus sequence involving proline residues, but which strengthen the concept of secondary and tertiary structure requirements. The advantages of high-energy collisionally induced dissociation analysis of O-linked glycopeptides over conventional base elimination and borohydride reduction and other mass spectrometric techniques are presented for the first time.
- Published
- 1990
- Full Text
- View/download PDF
37. Slow viruses: molecular properties of the agents causing scrapie in mice and hamsters.
- Author
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Prusiner SB, Cochran SP, Baringer JR, Groth D, Masiarz F, McKinley M, Bildstein C, Garfin D, Hadlow WJ, Race RE, and Eklund CM
- Subjects
- Animals, Centrifugation, Density Gradient, Cricetinae, Electrophoresis, Agar Gel, Electrophoresis, Polyacrylamide Gel, Mice, Sheep, Sodium Dodecyl Sulfate, Prions isolation & purification, Scrapie etiology
- Published
- 1980
38. Molecular properties, partial purification, and assay by incubation period measurements of the hamster scrapie agent.
- Author
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Prusiner SB, Groth DF, Cochran SP, Masiarz FR, McKinley MP, and Martinez HM
- Subjects
- Animals, Brain microbiology, Centrifugation, Cricetinae, Detergents pharmacology, Female, Mesocricetus, Methods, Prions drug effects, Sheep, Prions isolation & purification, Scrapie microbiology
- Abstract
The scrapie agent causes a progressive degeneration of the central nervous system of animals after a prolonged incubation period. Measurements of incubation period length, defined as the time from inoculation to the onset of clinical signs of neurological dysfunction, were related to the titer of the agent and the dilution of the inoculated sample. Equations defining the relationship provide a new assay for the agent requiring fewer animals than end point titrations. By use of this incubation period assay, the scrapie agent from hamster brain was found to have an s20,w of < 300 S but > 30 S assuming rho p = 1.2 g/cm3. A partially purified fraction P3 was obtained by differential centrifugation and sodium deoxycholate extraction. When P3 was extracted with phenol, virtually no infectivity was found in the aqueous phase even after examining such variables as pH, salt concentration, and predigestion of samples with proteinase K. Nonionic and nondenaturing, anionic detergents did not inactivate the scrapie agent; in contrast, denaturing detergents inactivated the agent. Sodium dodecyl sulfate (NaDodSO4) inactivated greater than 90% of the agent at a NaDodSO4 to protein ratio of 1.8 g/g. Inactivation by NaDodSO4 appears to be a cooperative process. Addition of a nonionic detergent to form mixed micelles with NaDodSO4 prevented inactivation of the agent by NaDodSO4. Weak chaotropic ions do not inactivate the scrapie agent while strong chaotropic ions like SCN- and Cl3CCOO- destroy infectivity at concentrations of 0.2 M. These data provide evidence in support of a protein component within the scrapie agent which is essential for maintenance of infectivity. Thus, it is unlikely that the scrapie agent is composed only of a "naked" nucleic acid as is the case for the plant viroids.
- Published
- 1980
- Full Text
- View/download PDF
39. Resistance of the scrapie agent to inactivation by psoralens.
- Author
-
McKinley MP, Masiarz FR, Isaacs ST, Hearst JE, and Prusiner SB
- Subjects
- Animals, Brain microbiology, Cricetinae, Drug Resistance, Microbial, Mice, Spleen microbiology, Structure-Activity Relationship, Furocoumarins pharmacology, Prions drug effects
- Published
- 1983
- Full Text
- View/download PDF
40. The cDNA and derived amino acid sequences for human and bovine matrix Gla protein.
- Author
-
Kiefer MC, Bauer DM, Young D, Hermsen KM, Masiarz FR, and Barr PJ
- Subjects
- Amino Acid Sequence, Animals, Base Sequence, Cattle, DNA genetics, Genes, Humans, Molecular Sequence Data, Rats, Sequence Homology, Nucleic Acid, Matrix Gla Protein, Calcium-Binding Proteins genetics, Extracellular Matrix Proteins
- Published
- 1988
- Full Text
- View/download PDF
41. Ribosomal RNA genes of Saccharomyces cerevisiae. II. Physical map and nucleotide sequence of the 5 S ribosomal RNA gene and adjacent intergenic regions.
- Author
-
Valenzuela P, Bell GI, Venegas A, Sewell ET, Masiarz FR, DeGennaro LJ, Weinberg F, and Rutter WJ
- Subjects
- Base Sequence, DNA Restriction Enzymes, Genes, RNA, Ribosomal genetics, Saccharomyces cerevisiae genetics
- Abstract
A DNA fragment containing the structural gene for the 5 S ribosomal RNA and intergenic regions before and after the 35 S ribosomal RNA precursor gene of Saccharomyces cerevisiae has been amplified in a bacterial plasmid and physically mapped by restriction endonuclease cleavage and hybridization to purified yeast 5 S ribosomal RNA. The nucleotide sequence of the DNA fragments carrying the 5 S ribosomal RNA gene and adjacent regions has been determined. The sequence unambiguously identifies the 5 S ribosomal RNA gene, determines its polarity within the ribosomal DNA repeating unit, and reveals the structure of its promoter and termination regions. Partial DNA sequence of the regions near the beginning and end of the 35 S ribosomal RNA gene has also been determined as a preliminary step in establishing the structure of promoter and termination regions for the 35 S ribosomal RNA gene.
- Published
- 1977
42. The human cytomegalovirus strain Towne glycoprotein H gene encodes glycoprotein p86.
- Author
-
Pachl C, Probert WS, Hermsen KM, Masiarz FR, Rasmussen L, Merigan TC, and Spaete RR
- Subjects
- Amino Acid Sequence, Base Sequence, Cloning, Molecular, Molecular Sequence Data, Molecular Weight, Peptide Fragments immunology, Transcription, Genetic, Transfection, Antigens, Viral genetics, Cytomegalovirus genetics, Genes, Viral, Membrane Glycoproteins genetics, Viral Envelope Proteins genetics, Viral Proteins genetics
- Abstract
The gene encoding the glycoprotein H (gH) homologue of CMV strain Towne was cloned, sequenced, and expressed. The predicted 742 amino acid gH protein had characteristics typical of a membrane glycoprotein including hydrophobic signal and transmembrane domains and six possible N-linked glycosylation sites. The CMV (Towne) gH gene had a 95% nucleotide identity and a 96.6% amino acid identity with the CMV (AD169) gH gene, as described by M. P. Cranage, G. L. Smith, S. E. Bell, H. Hart, C. Brown, A. T. Bankier, P. Tomlinson, B. G. Barrell, and T. C. Minson (1988, J. Virol. 62, 1416-1422). Transcriptional analysis of the gH gene revealed that the 2.9-kilobase (kb) gH transcript was not detected until late after CMV infection, indicating that the kinetics of gH expression were typical of the late class of CMV genes. The gH gene was expressed in COS cells using a vector in which transcription was driven by the SV40 early promoter. The expression of gH was detected by immunofluorescence using the virus neutralizing murine monoclonal antibody 1G6, which is specific for an 86-kilodalton (kDa) CMV virion membrane protein (p86). Amino acid sequence analysis of p86 tryptic peptides revealed sequence identity with peptides from the deduced gH amino acid sequence, confirming that the gH gene encodes p86. These results indicate that CMV gH can induce virus neutralizing antibodies and establishes gH as a candidate antigen for a subunit vaccine against CMV.
- Published
- 1989
- Full Text
- View/download PDF
43. Reversible chemical modification of the scrapie agent.
- Author
-
McKinley MP, Masiarz FR, and Prusiner SB
- Subjects
- Animals, Biological Assay, Brain microbiology, Chemical Phenomena, Chemistry, Cricetinae, Diethyl Pyrocarbonate pharmacology, Histidine pharmacology, Ribonucleases pharmacology, Serum Albumin, Bovine pharmacology, Viral Proteins pharmacology, Prions, Viral Proteins isolation & purification
- Abstract
The scrapie agent causes a degenerative nervous system disease in sheep and goats. Studies with extensively purified preparations demonstrated that the agent contains a protein that is required for infectivity. Chemical modification of the scrapie agent by diethyl pyrocarbonate reduced the titer 1000-fold. Exposure of the inactivated agent to hydroxylamine, a strong nucleophile, resulted in complete restoration of infectivity. Presumably, nucleophilic residues within a scrapie agent protein undergo carbethoxylation on reaction with diethyl pyrocarbonate, and subsequent addition of hydroxylamine displaces these carbethoxy groups.
- Published
- 1981
- Full Text
- View/download PDF
44. The human insulin receptor cDNA: the structural basis for hormone-activated transmembrane signalling.
- Author
-
Ebina Y, Ellis L, Jarnagin K, Edery M, Graf L, Clauser E, Ou JH, Masiarz F, Kan YW, and Goldfine ID
- Subjects
- Amino Acid Sequence, Base Sequence, Cell Membrane metabolism, Chromosomes, Human, 19-20, ErbB Receptors, Female, Humans, Membrane Proteins, Nucleic Acid Hybridization, Placenta analysis, Poly A genetics, Pregnancy, Protein Kinases metabolism, Protein-Tyrosine Kinases, RNA, Messenger genetics, Receptor, Insulin isolation & purification, Receptor, Insulin physiology, Receptors, Cell Surface, Structure-Activity Relationship, Transcription, Genetic, DNA isolation & purification, Receptor, Insulin genetics
- Abstract
A cloned approximately 5 kb cDNA (human placenta) contains the coding sequences for the insulin receptor. The nucleotide sequence predicts a 1382 amino acid precursor. The alpha subunit comprises the N-terminal portion of the precursor and contains a striking cysteine-rich "cross-linking" domain. The beta-subunit (the C-terminal portion of the precursor) contains a transmembrane domain and, in the intracellular region, the elements of a tyrosine phosphokinase: an ATP-binding site and a possible tyrosine autophosphorylation site or sites. The overall structure is reminiscent of the EGF receptor; the cross-linking domain of the alpha subunit and several regions of the beta subunit exhibit sequence homology with the EGF receptor. The phosphokinase domain also exhibits homology with some oncogenic proteins that have tyrosine phosphokinase activity, in particular, a striking homology with v-ros. Southern blotting experiments suggest that the coding region spans more than 45 kb. The insulin receptor gene is located on chromosome 19.
- Published
- 1985
- Full Text
- View/download PDF
45. Nucleotide sequence of the yeast 5S ribosomal RNA gene and adjacent putative control regions.
- Author
-
Valenzuela P, Bell GI, Masiarz FR, DeGennaro LJ, and Rutter WJ
- Subjects
- Base Sequence, Binding Sites, DNA, Recombinant analysis, DNA-Directed RNA Polymerases metabolism, Plasmids, Saccharomyces cerevisiae, Transcription, Genetic, Genes, Genes, Regulator, RNA, Ribosomal
- Published
- 1977
- Full Text
- View/download PDF
46. Isolation of the yeast calmodulin gene: calmodulin is an essential protein.
- Author
-
Davis TN, Urdea MS, Masiarz FR, and Thorner J
- Subjects
- Amino Acid Sequence, Base Sequence, Calcium metabolism, Calmodulin isolation & purification, Genes, Lethal, Calmodulin genetics, DNA, Fungal isolation & purification, Saccharomyces cerevisiae genetics
- Abstract
Calmodulin was purified from Saccharomyces cerevisiae based on its characteristic properties. Like other calmodulins, the yeast protein is small, heat-stable, acidic, retained by hydrophobic matrices in a Ca2+-dependent manner, exhibits a pronounced Ca2+-induced shift in electrophoretic mobility, and binds 45Ca2+. Using synthetic oligonucleotide probes designed from the sequences of two tryptic peptides derived from the purified protein, the gene encoding yeast calmodulin was isolated. The gene (designated CMD1) is a unique, single-copy locus, contains no introns, and resides on chromosome II. The amino acid sequence of yeast calmodulin shares 60% identity with other calmodulins. Disruption or deletion of the yeast calmodulin gene results in a recessive-lethal mutation; thus, calmodulin is essential for the growth of yeast cells.
- Published
- 1986
- Full Text
- View/download PDF
47. Formation of palmityl-[13'-32P]coenzyme A from [gamma-32P]ATP in mitochondrial extracts of guinea pig liver.
- Author
-
Masiarz FR and Agranoff BW
- Subjects
- Adenosine Triphosphatases pharmacology, Animals, Chemical Phenomena, Chemistry, Physical, Coenzyme A biosynthesis, Coenzyme A metabolism, Guinea Pigs, Lipid Metabolism, Oligomycins pharmacology, Palmitic Acids metabolism, Phosphorus Radioisotopes, Adenosine Triphosphate metabolism, Coenzyme A analogs & derivatives, Mitochondria, Liver metabolism
- Published
- 1977
- Full Text
- View/download PDF
48. Soluble lactose-binding vertebrate lectins: a growing family.
- Author
-
Leffler H, Masiarz FR, and Barondes SH
- Subjects
- Amino Acid Sequence, Animals, Blotting, Western, Chromatography, Ion Exchange, Intestines drug effects, Lung analysis, Lung drug effects, Mice, Molecular Sequence Data, Molecular Weight, Rats, Solubility, Intestinal Mucosa metabolism, Lactose metabolism, Lectins metabolism
- Abstract
Extracts of rat intestine contain nine soluble lactose-binding lectins with subunit molecular weights ranging from 14,500 to 19,000 that were purified by affinity chromatography and ion-exchange chromatography. Two of them are either identical with or closely related to other known rat lectins. A third appears to be the isolated carbohydrate-binding C-terminal domain of a known lectin but lacks the N-terminal domain presumed to mediate a different function. The others have not been described previously. Among them, the major rat intestinal lectin, RI-H, and a related protein, RI-G, have N-terminal amino acid sequences with similarities to sequences found in other known rat lectins. Therefore, these results introduce new members of a growing family of these structurally homologous soluble lactose-binding proteins.
- Published
- 1989
- Full Text
- View/download PDF
49. Isolation of cDNA encoding transcription factor Sp1 and functional analysis of the DNA binding domain.
- Author
-
Kadonaga JT, Carner KR, Masiarz FR, and Tjian R
- Subjects
- Amino Acid Sequence, Base Sequence, Cloning, Molecular, DNA metabolism, DNA-Binding Proteins analysis, DNA-Binding Proteins metabolism, Escherichia coli genetics, Humans, Molecular Sequence Data, Promoter Regions, Genetic, Protein Conformation, Repetitive Sequences, Nucleic Acid, Sp1 Transcription Factor, Transcription Factors analysis, Transcription Factors metabolism, Zinc analysis, Zinc pharmacology, DNA genetics, DNA-Binding Proteins genetics, Transcription Factors genetics
- Abstract
Transcription factor Sp1 is a protein present in mammalian cells that binds to GC box promoter elements and selectively activates mRNA synthesis from genes that contain functional recognition sites. We have isolated a cDNA that encodes the 696 C-terminal amino acid residues of human Sp1. By expression of truncated fragments of Sp1 in E. coli, we have localized the DNA binding activity to the C-terminal 168 amino acid residues. In this region, Sp1 has three contiguous Zn(II) finger motifs, which are believed to be metalloprotein structures that interact with DNA. We have found that purified Sp1 requires Zn(II) for sequence-specific binding to DNA. Thus, it is likely that Sp1 interacts with DNA by binding of the Zn(II) fingers. To facilitate the identification of mutant variants of Sp1 that are defective in DNA binding, we have also devised a bacterial colony assay for detection of Sp1 binding to DNA.
- Published
- 1987
- Full Text
- View/download PDF
50. Human cytomegalovirus strain Towne glycoprotein B is processed by proteolytic cleavage.
- Author
-
Spaete RR, Thayer RM, Probert WS, Masiarz FR, Chamberlain SH, Rasmussen L, Merigan TC, and Pachl C
- Subjects
- Amino Acid Sequence, Base Sequence, Blotting, Northern, Blotting, Western, Cell Line, Cloning, Molecular, Cytomegalovirus immunology, Cytomegalovirus metabolism, DNA, Viral genetics, Epitopes analysis, Epitopes immunology, Genes, Viral, Humans, Immunoassay, Molecular Sequence Data, Plasmids, Protein Conformation, Protein Processing, Post-Translational, RNA, Viral genetics, Transcription, Genetic, Transfection, Viral Envelope Proteins immunology, Viral Envelope Proteins metabolism, Cytomegalovirus genetics, Viral Envelope Proteins genetics
- Abstract
The gene encoding glycoprotein B of human cytomegalovirus (CMV) strain Towne was cloned, sequenced, and expressed in order to study potential targets for viral neutralization. Secondary structure analysis of the 907 amino acid protein predicted a 24 amino acid N-terminal signal sequence and a potential transmembrane region composed of two domains, 34 and 21 amino acids. The CMV (Towne) gB gene had a 94% nucleotide similarity and a 95% amino acid similarity to the CMV (AD169) gB gene [as described by M.P. Cranage et al. (1986, EMBO J. 5, 3057-3063)]. Transcriptional analysis of the CMV (Towne) gB coding strand revealed that the gB message (3.9 kb), was transcribed from this region as early as 4 hr postinfection, and well in advance of gB protein synthesis. Full-length and truncated versions of the gB gene were expressed in COS cells using expression vectors where transcription was driven by the SV40 early promoter or the CMV major immediate early promoter. Expression was detected by immunofluorescence and ELISA using the virus neutralizing murine monoclonal antibody 15D8 (L. Rasmussen, J. Mullenax, R. Nelson, and T.C. Merigan, 1985, J. Virol. 55, 274-280). This antibody had been shown previously to recognize a 55-kDa CMV virion protein and a related 130-kDa intracellular precursor. Amino acid sequence analysis of the N-terminus of the 55-kDa viral glycoprotein (gp55) showed that gp55 is derived from gB (gp130) by proteolytic cleavage and represents the C-terminal region of gp130. The truncated version of gB expressed in COS and CHO cells was also processed by proteolytic cleavage as demonstrated by Western blotting. Our study localizes the epitope recognized by 15D8 to within a 186 amino acid fragment of the gp55 protein. These results indicate that CMV gB is a target for neutralization and establishes gp55 as a candidate component for use in a subunit vaccine.
- Published
- 1988
- Full Text
- View/download PDF
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