48 results on '"Mary Hinkle"'
Search Results
2. Pseudomonas Endocarditis with an unstable phenotype: the challenges of isolate characterization and Carbapenem stewardship with a partial review of the literature
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Emil Lesho, Erik Snesrud, Yoon Kwak, Ana Ong, Rosslyn Maybank, Maryrose Laguio-Vila, Ann R. Falsey, and Mary Hinkle
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Pseudomonas aeruginosa ,Endocarditis ,Stewardship ,Whole-genome sequencing ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Pseudomonas endocarditis is exceedingly rare, especially in patients without predisposing risks. We present such a case that included unexpected switches in antibacterial resistance profiles in two Pseudomonas aeruginosa (PA) strains with the same whole-genome sequence. The case also involved diagnostic and treatment challenges, such as issues with automated testing platforms, choosing the optimal aminoglycoside, minimizing unnecessary carbapenem exposure, and the need for faster, more informative laboratory tests. Case presentation On hospital day one (HD-1) a cefepime and piperacillin-tazobactam (FEP-TZP)-susceptible P. aeruginosa was isolated from the bloodstream of a 62-year-old man admitted for evaluation of possible endocarditis and treated with gentamicin and cefepime. On HD-2, his antibiotic regimen was changed to tobramycin and cefepime. On HD-11, he underwent aortic valve replacement, and P. aeruginosa was isolated from the explanted valve. Unexpectedly, it was FEP-TZP-resistant, so cefepime was switched to meropenem. On HD-14, in preparation for whole-genome sequencing (WGS), valve and blood isolates were removed from cryo-storage, re-cultured, and simultaneously tested with the same platforms, reagents, and inoculations previously used. Curiously, the valve isolate was now FEP-TZP-susceptible. WGS revealed that both isolates were phylogenetically identical, differing by a single nucleotide in a chemotaxis-encoding gene. They also contained the same resistance genes (bla ADC35, aph(3′)-II, bla OXA-50, catB7, fosA). Conclusion Repeated testing on alternate platforms and WGS did not definitively determine the resistance mechanism(s), which in this case, is most likely unstable de-repression of a chromosomal AmpC β-lactamase, porin alterations, or efflux upregulation, with reversion to baseline (non-efflux) transcription. Although sub-culture on specialized media to select for less fit (more resistant) colonies, followed by transcriptome analysis, and multiple sequence alignment, might have revealed the mechanism and better informed the optimal choice of β-lactam, such approaches are neither rapid, nor feasible for hospital laboratories. In this era of escalating drug resistance and dwindling antibiotics, use of the most potent anti-pseudomonals must be balanced with stewardship. Clinicians need access to validated genomic correlates of resistance, and faster, more informative diagnostics. Therefore, we placed these isolates and their sequences in the public domain for inclusion in the Pseudomonas pan-genome and database projects for further countermeasure development.
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- 2017
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3. The Challenges of Implementing Next Generation Sequencing Across a Large Healthcare System, and the Molecular Epidemiology and Antibiotic Susceptibilities of Carbapenemase-Producing Bacteria in the Healthcare System of the U.S. Department of Defense.
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Emil Lesho, Robert Clifford, Fatma Onmus-Leone, Lakshmi Appalla, Erik Snesrud, Yoon Kwak, Ana Ong, Rosslyn Maybank, Paige Waterman, Patricia Rohrbeck, Michael Julius, Amanda Roth, Joshua Martinez, Lindsey Nielsen, Eric Steele, Patrick McGann, and Mary Hinkle
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Medicine ,Science - Abstract
OBJECTIVE:We sought to: 1) provide an overview of the genomic epidemiology of an extensive collection of carbapenemase-producing bacteria (CPB) collected in the U.S. Department of Defense health system; 2) increase awareness of the public availability of the sequences, isolates, and customized antimicrobial resistance database of that system; and 3) illustrate challenges and offer mitigations for implementing next generation sequencing (NGS) across large health systems. DESIGN:Prospective surveillance and system-wide implementation of NGS. SETTING:288-hospital healthcare network. METHODS:All phenotypically carbapenem resistant bacteria underwent CarbaNP® testing and PCR, followed by NGS. Commercial (Newbler and Geneious), on-line (ResFinder), and open-source software (Btrim, FLASh, Bowtie2, an Samtools) were used for assembly, SNP detection and clustering. Laboratory capacity, throughput, and response time were assessed. RESULTS:From 2009 through 2015, 27,000 multidrug-resistant Gram-negative isolates were submitted. 225 contained carbapenemase-encoding genes (most commonly blaKPC, blaNDM, and blaOXA23). These were found in 15 species from 146 inpatients in 19 facilities. Genetically related CPB were found in more than one hospital. Other clusters or outbreaks were not clonal and involved genetically related plasmids, while some involved several unrelated plasmids. Relatedness depended on the clustering algorithm used. Transmission patterns of plasmids and other mobile genetic elements could not be determined without ultra-long read, single-molecule real-time sequencing. 80% of carbapenem-resistant phenotypes retained susceptibility to aminoglycosides, and 70% retained susceptibility to fluoroquinolones. However, among the CPB-confirmed genotypes, fewer than 25% retained susceptibility to aminoglycosides or fluoroquinolones. CONCLUSION:Although NGS is increasingly acclaimed to revolutionize clinical practice, resource-constrained environments, large or geographically dispersed healthcare networks, and military or government-funded public health laboratories are likely to encounter constraints and challenges as they implement NGS across their health systems. These include lack of standardized definitions and quality control metrics, limitations of short-read sequencing, insufficient bandwidth, and the current limited availability of very expensive and scarcely available sequencing platforms. Possible solutions and mitigations are also proposed.
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- 2016
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4. Word of Life: Introducing Lutheran Hermeneutics by Timothy J. Wengert (review)
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Shore, Mary Hinkle
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- 2021
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5. Does this Text Have a Future?
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Shore, Mary Hinkle, primary
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- 2020
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6. Preaching Gospel: Essays in Honor of Richard Lischer
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Charles L. Campbell, Clayton J. Schmit, Mary Hinkle Shore, Jennifer E. Copeland, Campbell, Schmit
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- 2016
7. A Panel of Diverse Klebsiella pneumoniae Clinical Isolates for Research and Development
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Melissa J. Martin, William Stribling, Ana C. Ong, Rosslyn Maybank, Yoon I. Kwak, Joshua A. Rosado-Mendez, Lan N Preston, Katharine F. Lane, Michael Julius, Anthony R. Jones, Mary Hinkle, Paige E. Waterman, Emil P. Lesho, Francois Lebreton, Jason W. Bennett, and Patrick T. McGann
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General Medicine - Abstract
Klebsiella pneumoniae are a leading cause of healthcare-associated infections worldwide. In particular, strains expressing extended-spectrum β-lactamases (ESBLs) and carbapenemases pose serious treatment challenges, leading the World Health Organization (WHO) to designate ESBL and carbapenem-resistant Enterobacteriaceae as ‘critical’ threats to human health. Research efforts to combat these pathogens can be supported by accessibility to diverse and clinically relevant isolates for testing novel therapeutics. Here, we describe a panel of 100 diverse K. pneumoniae isolates that are publicly available to assist the research community in this endeavour. Whole-genome sequencing (WGS) was performed on 3878 K . pneumoniae clinical isolates housed at the Multidrug-Resistant Organism Repository and Surveillance Network. The isolates were cultured from 63 facilities in 19 countries between 2001 and 2020. Core-genome multilocus sequence typing and high-resolution single-nucleotide polymorphism-based phylogenetic analyses captured the genetic diversity of the collection and were used to select the final panel of 100 isolates. In addition to known multidrug-resistant (MDR) pandemic lineages, the final panel includes hypervirulent lineages and isolates with specific and diverse resistance genes and virulence biomarkers. A broad range of antibiotic susceptibilities, ranging from pan-sensitive to extensively drug-resistant isolates, are described. The panel collection, and all associated metadata and genome sequences, are available at no additional cost and will be an important resource for the research community and for the design and development of novel antimicrobial agents and diagnostics against this important pathogen.
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- 2022
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8. A panel of diverse Pseudomonas aeruginosa clinical isolates for research and development
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Francois Lebreton, Erik Snesrud, Lindsey Hall, Emma Mills, Madeline Galac, Jason Stam, Ana Ong, Rosslyn Maybank, Yoon I Kwak, Sheila Johnson, Michael Julius, Melissa Ly, Brett Swierczewski, Paige E Waterman, Mary Hinkle, Anthony Jones, Emil Lesho, Jason W Bennett, and Patrick McGann
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Objectives Pseudomonas aeruginosa is a leading cause of community- and hospital-acquired infections. Successful treatment is hampered by its remarkable ability to rapidly develop resistance to antimicrobial agents, primarily through mutation. In response, WHO listed carbapenem-resistant P. aeruginosa as a Priority 1 (Critical) pathogen for research and development of new treatments. A key resource in developing effective countermeasures is access to diverse and clinically relevant strains for testing. Herein we describe a panel of 100 diverse P. aeruginosa strains to support this endeavour. Methods WGS was performed on 3785 P. aeruginosa isolates in our repository. Isolates were cultured from clinical samples collected from healthcare facilities around the world between 2003 and 2017. Core-genome MLST and high-resolution SNP-based phylogenetic analyses were used to select a panel of 100 strains that captured the genetic diversity of this collection. Antibiotic susceptibility testing was also performed using 14 clinically relevant antibiotics. Results This 100-strain diversity panel contained representative strains from 91 different STs, including genetically distinct strains from major epidemic clones ST-111, ST-235, ST-244 and ST-253. Seventy-one distinct antibiotic susceptibility profiles were identified ranging from pan-susceptible to pan-resistant. Known resistance alleles as well as the most prevalent mutations underlying the antibiotic susceptibilities were characterized for all isolates. Conclusions This panel provides a diverse and comprehensive set of P. aeruginosa strains for use in developing solutions to antibiotic resistance. The isolates and available metadata, including genome sequences, are available to industry, academia, federal and other laboratories at no additional cost.
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- 2021
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9. Near-infrared Spectral Characterization of Solar-type Stars in the Northern Hemisphere
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Jenna L. Crowell, Ellen S. Howell, Mary Hinkle, Yanga R. Fernandez, Ronald J. Vervack, Collin Lewin, Christopher Magri, and Sean E. Marshall
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Solar System ,Spectral shape analysis ,010504 meteorology & atmospheric sciences ,media_common.quotation_subject ,FOS: Physical sciences ,Astrophysics ,01 natural sciences ,Spectral line ,0103 physical sciences ,Astrophysics::Solar and Stellar Astrophysics ,010303 astronomy & astrophysics ,Solar and Stellar Astrophysics (astro-ph.SR) ,Astrophysics::Galaxy Astrophysics ,0105 earth and related environmental sciences ,media_common ,Physics ,Earth and Planetary Astrophysics (astro-ph.EP) ,Near-infrared spectroscopy ,Astronomy and Astrophysics ,Stars ,Astrophysics - Solar and Stellar Astrophysics ,Space and Planetary Science ,Asteroid ,Sky ,Physics::Space Physics ,Astrophysics::Earth and Planetary Astrophysics ,Visible spectrum ,Astrophysics - Earth and Planetary Astrophysics - Abstract
Although solar-analog stars have been studied extensively over the past few decades, most of these studies have focused on visible wavelengths, especially those identifying solar-analog stars to be used as calibration tools for observations. As a result, there is a dearth of well-characterized solar analogs for observations in the near-infrared, a wavelength range important for studying solar system objects. We present 184 stars selected based on solar-like spectral type and V-J and V-K colors whose spectra we have observed in the 0.8-4.2 micron range for calibrating our asteroid observations. Each star has been classified into one of three ranks based on spectral resemblance to vetted solar analogs. Of our set of 184 stars, we report 145 as reliable solar-analog stars, 21 as solar analogs usable after spectral corrections with low-order polynomial fitting, and 18 as unsuitable for use as calibration standards owing to spectral shape, variability, or features at low to medium resolution. We conclude that all but 5 of our candidates are reliable solar analogs in the longer wavelength range from 2.5 to 4.2 microns. The average colors of the stars classified as reliable or usable solar analogs are V-J=1.148, V-H=1.418, and V-K=1.491, with the entire set being distributed fairly uniformly in R.A. across the sky between -27 and +67 degrees in decl., 19 pages, 8 figures, 2 tables
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- 2020
10. Does this Text Have a Future?
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Mary Hinkle Shore
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Eschatology ,Interpretation (philosophy) ,Philosophy ,Epistemology - Published
- 2020
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11. Genomic Characterization of Nonclonal mcr-1-Positive Multidrug-Resistant Klebsiella pneumoniae from Clinical Samples in Thailand
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Brett E. Swierczewski, Rosslyn Maybank, Apichai Srijan, Patrick McGann, Oralak Serichantalergs, Jossin Sriyabhaya, Rosarin Kormanee, Katie R. Margulieux, John M. Crawford, Mary Hinkle, Sirigade Ruekit, Prawet Sukhchat, and Erik Snesrud
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0301 basic medicine ,Microbiology (medical) ,Male ,Klebsiella pneumoniae ,030106 microbiology ,Immunology ,Genomics ,mcr-1 ,Microbiology ,beta-Lactamases ,03 medical and health sciences ,Plasmid ,Bacterial Proteins ,Enterobacteriaceae ,Drug Resistance, Multiple, Bacterial ,medicine ,Mechanisms ,Humans ,Gene ,Pharmacology ,Aged, 80 and over ,biology ,Colistin ,Escherichia coli Proteins ,MDRO ,biology.organism_classification ,Thailand ,Anti-Bacterial Agents ,030104 developmental biology ,Drug of last resort ,MCR-1 ,hormones, hormone substitutes, and hormone antagonists ,medicine.drug ,Plasmids - Abstract
Multidrug-resistant Klebsiella pneumoniae strains are one of the most prevalent causes of nosocomial infections and pose an increasingly dangerous public health threat. The lack of remaining treatment options has resulted in the utilization of older drug classes, including colistin. As a drug of last resort, the discovery of plasmid-mediated colistin resistance by mcr-1 denotes the potential development of pandrug-resistant bacterial pathogens. To address the emergence of the mcr-1 gene, 118 gram-negative Enterobacteriaceae isolated from clinical samples collected at Queen Sirikit Naval Hospital in Chonburi, Thailand were screened for colistin resistance using automated antimicrobial susceptibility testing and conventional PCR screening. Two K. pneumoniae strains, QS17-0029 and QS17-0161, were positive for mcr-1, and both isolates were sequenced to closure using short- and long-read whole-genome sequencing. QS17-0029 carried 16 antibiotic resistance genes in addition to mcr-1, including 2 carbapenemases, blaNDM-1 and blaOXA-232. QS17-0161 carried 13 antibiotic resistance genes in addition to mcr-1, including the extended-spectrum β-lactamase blaCTX-M-55. Both isolates carried multiple plasmids, but mcr-1 was located alone on highly similar 33.9 Kb IncX4 plasmids in both isolates. The IncX4 plasmid shared considerable homology to other mcr-1-containing IncX4 plasmids. This is the first report of a clinical K. pneumoniae strain from Thailand carrying mcr-1 as well as the first strain to simultaneously carry mcr-1 and multiple carbapenemase genes (QS17-0029). The identification and characterization of these isolates serves to highlight the urgent need for continued surveillance and intervention in Southeast Asia, where extensively drug-resistant pathogens are being increasingly identified in hospital-associated infections.
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- 2018
12. Word of Life: Introducing Lutheran Hermeneutics by Timothy J. Wengert
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Mary Hinkle Shore
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Philosophy ,General Earth and Planetary Sciences ,Hermeneutics ,Theology ,Word (computer architecture) ,General Environmental Science - Published
- 2021
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13. Got GAS? Ease the Bloat with Real-Time Whole-Genome Sequencing
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Melissa Bronstein, Patrick McGann, Emil Lesho, Ana Ong, Rosslyn Maybank, Margaret Pettis, Erik Snesrud, Yoon I. Kwak, Anthony Jones, Kelly Vore, and Mary Hinkle
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0301 basic medicine ,Microbiology (medical) ,Whole genome sequencing ,Cross Infection ,Whole Genome Sequencing ,Streptococcus pyogenes ,Epidemiology ,business.industry ,030106 microbiology ,Hospitals, Community ,Computational biology ,Disease Outbreaks ,03 medical and health sciences ,Infectious Diseases ,Streptococcal Infections ,Humans ,Surgical Wound Infection ,Medicine ,Letters to the Editor ,business - Published
- 2018
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14. Real time application of whole genome sequencing for outbreak investigation – What is an achievable turnaround time?
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Scott Seronello, Rosslyn Maybank, Jason Barnhill, Jessica Bunin, Erik Snesrud, Mary Hinkle, Yoon I. Kwak, Emil Lesho, Patrick McGann, Robert J. Clifford, Seema Singh, Stephen Yamada, and Ana C. Ong
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Male ,0301 basic medicine ,Microbiology (medical) ,Time Factors ,Enterococcus faecium ,030106 microbiology ,Computational biology ,Bioinformatics ,Turnaround time ,Disease Outbreaks ,Vancomycin-Resistant Enterococci ,Tertiary Care Centers ,03 medical and health sciences ,Humans ,Medicine ,Gram-Positive Bacterial Infections ,Aged ,Vancomycin resistant Enterococcus faecium ,Whole genome sequencing ,Cross Infection ,Molecular Epidemiology ,Molecular epidemiology ,biology ,business.industry ,Outbreak ,Sequence Analysis, DNA ,General Medicine ,Middle Aged ,Tertiary care hospital ,biology.organism_classification ,Molecular Typing ,Time line ,030104 developmental biology ,Infectious Diseases ,Female ,business - Abstract
Whole genome sequencing (WGS) is increasingly employed in clinical settings, though few assessments of turnaround times (TAT) have been performed in real-time. In this study, WGS was used to investigate an unfolding outbreak of vancomycin resistant Enterococcus faecium (VRE) among 3 patients in the ICU of a tertiary care hospital. Including overnight culturing, a TAT of just 48.5 h for a comprehensive report was achievable using an Illumina Miseq benchtop sequencer. WGS revealed that isolates from patient 2 and 3 differed from that of patient 1 by a single nucleotide polymorphism (SNP), indicating nosocomial transmission. However, the unparalleled resolution provided by WGS suggested that nosocomial transmission involved two separate events from patient 1 to patient 2 and 3, and not a linear transmission suspected by the time line. Rapid TAT’s are achievable using WGS in the clinical setting and can provide an unprecedented level of resolution for outbreak investigations.
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- 2016
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15. Complete Genome Sequence of Staphylococcus epidermidis CSF41498
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Madeline R. Galac, Paul D. Fey, Ana C. Ong, James P. O'Gara, Tra My N. Hoang, and Mary Hinkle
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Whole genome sequencing ,Genetics ,0303 health sciences ,Strain (chemistry) ,biology ,030306 microbiology ,Genome Sequences ,Biofilm ,biology.organism_classification ,Genome ,3. Good health ,03 medical and health sciences ,Plasmid ,Immunology and Microbiology (miscellaneous) ,Staphylococcus epidermidis ,Molecular Biology ,Gene ,030304 developmental biology ,Sequence (medicine) - Abstract
Staphylococcus epidermidis CSF41498 is amenable to genetic manipulation and has been used to study mechanisms of biofilm formation. We report here the whole-genome sequence of this strain, which contains 2,427 protein-coding genes and 82 RNAs within its 2,481,008-bp-long genome, as well as three plasmids.
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- 2019
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16. A common origin for dynamically associated near-Earth asteroid pairs
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Louis Avner, B. Burt, Eric Christensen, Mark Willman, Davide Farnocchia, Audrey Thirouin, Mitchell Magnusson, Maxime Devogele, David E. Trilling, Lawrence H. Wasserman, Francesca E. DeMeo, Michael Person, Richard P. Binzel, Mary Hinkle, Joseph L. Hora, Robert Matson, David Polishook, Michael Mommert, Brian Skiff, Nicholas Moskovitz, P. Fatka, Cristina A. Thomas, and Massachusetts Institute of Technology. Department of Earth, Atmospheric, and Planetary Sciences
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Physics ,Earth and Planetary Astrophysics (astro-ph.EP) ,education.field_of_study ,Near-Earth object ,010504 meteorology & atmospheric sciences ,Conjunction (astronomy) ,Population ,Binary number ,FOS: Physical sciences ,Astronomy and Astrophysics ,Class (philosophy) ,Astrophysics ,Space (mathematics) ,01 natural sciences ,Space and Planetary Science ,Asteroid ,0103 physical sciences ,education ,010303 astronomy & astrophysics ,0105 earth and related environmental sciences ,Astrophysics - Earth and Planetary Astrophysics - Abstract
Though pairs of dynamically associated asteroids in the Main Belt have been identified and studied for over a decade, very few pair systems have been identified in the near-Earth asteroid population. We present data and analysis that supports the existence of two genetically related pairs in near-Earth space. The members of the individual systems, 2015 EE7-2015 FP124 and 2017 SN16-2018 RY7, are found to be of the same spectral taxonomic class, and both pairs are interpreted to have volatile-poor compositions. In conjunction with dynamical arguments, this suggests that these two systems formed via YORP spin-up and/or dissociation of a binary precursor. Backwards orbital integrations suggest a separation age of, NASA (Grant no. NNX14AN82G), NASA (Grant no. NNX17AH06G), NASA (Grant no. 80NSSC18K0849)
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- 2019
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17. Visible spectroscopy from the Mission Accessible Near-Earth Object Survey (MANOS): Taxonomic dependence on asteroid size
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Brian Burt, Annika Gustaffson, David Polishook, Mary Hinkle, Cristina A. Thomas, David E. Trilling, Audrey Thirouin, Mark Willman, Brian Skiff, Francesca E. DeMeo, Michael Person, Richard P. Binzel, Maxime Devogele, Mitchell Magnuson, Nicholas Moskovitz, Michael Mommert, and Eric Christensen
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Physics ,Earth and Planetary Astrophysics (astro-ph.EP) ,Near-Earth object ,010504 meteorology & atmospheric sciences ,Astronomy ,FOS: Physical sciences ,ComputingMilieux_LEGALASPECTSOFCOMPUTING ,Astronomy and Astrophysics ,Space (commercial competition) ,01 natural sciences ,Government (linguistics) ,Space and Planetary Science ,Asteroid ,0103 physical sciences ,ComputingMilieux_COMPUTERSANDEDUCATION ,Christian ministry ,010303 astronomy & astrophysics ,Astrophysics - Earth and Planetary Astrophysics ,0105 earth and related environmental sciences - Abstract
The Mission Accessible Near-Earth Object Survey (MANOS) aims to observe and characterize small (mean absolute magnitude H ~ 25 mag) Near-Earth Objects (NEOs) that are accessible by spacecraft (mean $\Delta v$ ~ 5.7 km/s) and that make close approaches with the Earth (mean Minimum Orbital Intersection Distance MOID ~ 0.03 AU). We present here the first results of the MANOS visible spectroscopic survey. The spectra were obtained from August 2013 to March 2018 at Lowell Observatory's Discovery Channel 4.3 meter telescope, and both Gemini North and South facilities. In total, 210 NEOs have been observed and taxonomically classified. Our taxonomic distribution shows significant variations with respect to surveys of larger objects. We suspect these to be due to a dependence of Main Belt source regions on object size. Compared to previous surveys of larger objects (Binzel et al. 2019, 2004; Perna et al. 2018), we report a lower fraction of S+Q-complex asteroids of 43.8 $\pm$ 4.6%. We associate this decrease with a lack of Phocaea family members at very small size. We also report higher fractions of X-complex and A-type asteroids of 23.8 $\pm$ 3.3% and 3.8 $\pm$ 1.3% respectively due to an increase of Hungaria family objects at small size. We find a strong correlation between the Q/S ratio and perihelion distance. We suggest this correlation is due to planetary close encounters with Venus playing a major role in turning asteroids from S to Q-type. This hypothesis is supported by a similar correlation between the Q/S ratio and Venus MOID., Comment: 29 pages, 12 figures
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- 2019
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18. Bacteraemia due to Microbacterium paraoxydans in a patient with chronic kidney disease, refractory hypertension and sarcoidosis
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Nancy C. Smith, Ann C. Ong, Jason Stam, Edwin Kamau, Mary Hinkle, Jack N. Hutter, Matthew S. Chorost, Kurt E. Schaecher, and Patrick McGann
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0301 basic medicine ,Microbiology (medical) ,medicine.medical_specialty ,IV vancomycin ,Microbacterium paraoxydans ,medicine.medical_treatment ,030106 microbiology ,Microbacterium ,Case Report ,Microbiology ,dizzy spells ,03 medical and health sciences ,PO levofloxacin ,Staphylococcus epidermidis ,Levofloxacin ,Internal medicine ,Medicine ,tenderness and discharge ,Catheter insertion ,biology ,business.industry ,Blood/heart and Lymphatics ,Becton dickinson ,biology.organism_classification ,Microbacterium paraoxydans infection ,Vancomycin ,business ,Central venous catheter ,erythema ,medicine.drug - Abstract
Introduction. Microbacterium spp. are yellow-pigmented Gram-positive coryneform rods found in various environmental sources, such as soil and water samples. They rarely cause human infection, mostly infecting immunocompromised patients and catheter insertion sites, making them challenging to identify in clinical settings. Case presentation. We report a case of a 61-year-old female on long-term prednisone therapy for sarcoidosis with minimal exposure to environmental sources, who presented with an overtly infected Hickman catheter site and presyncope. The patient had a central venous catheter (CVC) that had been in place for the previous 6 years for treatment of refractory hypertension and congestive heart failure. Blood cultures obtained from the CVC on initial presentation were positive for a mixed infection, which was subcultured and grew Staphylococcus aureus, Staphylococcus epidermidis, Acinetobacter radioresistens and Leifsonia aquatica based on the Becton Dickinson Phoenix Automated Microbiology System. The L. aquatica, designated as isolate 4120, was further analysed, since infections associated with this organism are uncommon, and it was the only organism to grow from the patient’s catheter tip. Matrix-assisted laser desorption ionization–time of flight MS identified isolate 4120 as Microbacterium paraoxydans. To resolve the conflicting results, additional analyses of isolate 4120 were carried out and compared to several reference strains. Isolate 4120 was found to have intermediate susceptibility to ciprofloxacin and non-susceptibility to vancomycin. Morphology, susceptibility, biochemical characteristics and whole-genome sequencing confirmed the clinical isolate as Microbacterium paraoxydans. Conclusion. In this case, we identified an organism that is rarely seen in clinical settings and characterized it with a comprehensive laboratory analysis. The patient in our case responded to replacement of the CVC, and treatment with levofloxacin by mouth and intravenous vancomycin.
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- 2018
19. The Mission Accessible Near-Earth Objects Survey: Four years of photometry
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Mark Willman, Francesca E. DeMeo, Audrey Thirouin, Mary Hinkle, Nicholas Moskovitz, Teznie Pugh, David E. Trilling, Eric Christensen, Brian Burt, Cristina A. Thomas, Richard P. Binzel, and David Polishook
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Physics ,Earth and Planetary Astrophysics (astro-ph.EP) ,Near-Earth object ,010504 meteorology & atmospheric sciences ,FOS: Physical sciences ,Astronomy and Astrophysics ,Astrophysics ,Light curve ,01 natural sciences ,Photometry (astronomy) ,symbols.namesake ,Amplitude ,Space and Planetary Science ,Asteroid ,Radar imaging ,0103 physical sciences ,symbols ,010303 astronomy & astrophysics ,Doppler effect ,0105 earth and related environmental sciences ,Astrophysics - Earth and Planetary Astrophysics - Abstract
Over 4.5 years, the Mission Accessible Near-Earth Object Survey (MANOS) assembled 228 Near-Earth Object (NEO) lightcurves. We report rotational lightcurves for 82 NEOs, constraints on amplitudes and periods for 21 NEOs, lightcurves with no detected variability within the image signal to noise and length of our observing block for 30 NEOs, and 10 tumblers. We uncovered 2 ultra-rapid rotators with periods below 20s; 2016MA with a potential rotational periodicity of 18.4s, and 2017QG$_{18}$ rotating in 11.9s, and estimate the fraction of fast/ultra-rapid rotators undetected in our project plus the percentage of NEOs with a moderate/long periodicity undetectable during our typical observing blocks. We summarize the findings of a simple model of synthetic NEOs to infer the object morphologies distribution using the measured distribution of lightcurve amplitudes. This model suggests a uniform distribution of axis ratio can reproduce the observed sample. This suggests that the quantity of spherical NEOs (e.g., Bennu) is almost equivalent to the quantity of highly elongated objects (e.g., Itokawa), a result that can be directly tested thanks to shape models from Doppler delay radar imaging analysis. Finally, we fully characterized 2 NEOs as appropriate targets for a potential robotic/human mission: 2013YS$_{2}$ and 2014FA$_{7}$ due to their moderate spin periods and low $\Delta v$., Comment: Accepted for Publication, The Astrophysical Journal Supplement Series
- Published
- 2018
20. Chromosomally Encoded mcr-5 in Colistin-Nonsusceptible Pseudomonas aeruginosa
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Rosslyn Maybank, Yoon I. Kwak, Patrick McGann, Mary Hinkle, Anthony Jones, and Erik Snesrud
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0301 basic medicine ,Pharmacology ,Transposable element ,Pseudomonas aeruginosa ,030106 microbiology ,Broth microdilution ,Biology ,medicine.disease_cause ,Genome ,Microbiology ,Colistin resistance ,03 medical and health sciences ,Infectious Diseases ,Colistin ,medicine ,Pharmacology (medical) ,medicine.drug - Abstract
Whole-genome sequencing (WGS) of historical Pseudomonas aeruginosa clinical isolates identified a chromosomal copy of mcr-5 within a Tn 3 -like transposon in P. aeruginosa MRSN 12280. The isolate was nonsusceptible to colistin by broth microdilution, and genome analysis revealed no mutations known to confer colistin resistance. To the best of our knowledge, this is the first report of mcr in colistin-nonsusceptible P. aeruginosa .
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- 2018
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21. Clinical and Genomic Features of the First Cases of Elizabethkingia anophelis Infection in New York, Including the First Case in a Healthy Infant Without Previous Nosocomial Exposure
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Patrick McGann, Erik Snesrud, Rosslyn Maybank, Edward E. Walsh, Yoon I. Kwak, Ana Ong, Kelly Vore, Mary Hinkle, Jean Campbell, Anthony Jones, and Emil Lesho
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Adult ,Male ,Gram-negative bacteria ,food.ingredient ,Elizabethkingia ,New York ,medicine.disease_cause ,Neonatal meningitis ,Microbiology ,Sepsis ,03 medical and health sciences ,0302 clinical medicine ,food ,Flavobacteriaceae Infections ,030225 pediatrics ,medicine ,Humans ,Phylogeny ,Aged ,Whole genome sequencing ,0303 health sciences ,Cross Infection ,biology ,030306 microbiology ,business.industry ,Outbreak ,Infant ,General Medicine ,Genomics ,Sequence Analysis, DNA ,biology.organism_classification ,medicine.disease ,Infectious Diseases ,Case-Control Studies ,Pediatrics, Perinatology and Child Health ,Elizabethkingia anophelis ,Female ,business ,Flavobacteriaceae - Abstract
Elizabethkingia spp are Gram-negative bacteria associated with neonatal meningitis. In 2015–2016, an outbreak of Elizabethkingia anophelis infection that involved 63 patients and 18 deaths occurred in Wisconsin. Despite a multistate investigation, as of September 2016 the source remained undetermined, and experts warned of reemergence. We describe here the first cases of E anophelis infection in New York, including the case of a healthy infant without previous healthcare contact.
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- 2018
22. Genomic and epidemiological evidence of bacterial transmission from probiotic capsule to blood in ICU patients
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Idan, Yelin, Kelly B, Flett, Christina, Merakou, Preeti, Mehrotra, Jason, Stam, Erik, Snesrud, Mary, Hinkle, Emil, Lesho, Patrick, McGann, Alexander J, McAdam, Thomas J, Sandora, Roy, Kishony, and Gregory P, Priebe
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Diarrhea ,Whole Genome Sequencing ,Probiotics ,Genetic Variation ,Bacteremia ,Genomics ,Polymorphism, Single Nucleotide ,Intensive Care Units ,Lactobacillus ,Drug Resistance, Bacterial ,Mutation ,Humans ,Genome, Bacterial ,Phylogeny - Abstract
Probiotics are routinely administered to hospitalized patients for many potential indications
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- 2018
23. Chromosomally Encoded mcr-5 in Colistin Non-susceptible Pseudomonas aeruginosa
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Patrick McGann, Rosslyn Maybank, Anthony Jones, Yoon I. Kwak, Erik Snesrud, and Mary Hinkle
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Transposable element ,Whole genome sequencing ,0303 health sciences ,030306 microbiology ,Pseudomonas aeruginosa ,Broth microdilution ,Biology ,medicine.disease_cause ,equipment and supplies ,Genome ,3. Good health ,Colistin resistance ,Microbiology ,03 medical and health sciences ,medicine ,Colistin ,polycyclic compounds ,bacteria ,lipids (amino acids, peptides, and proteins) ,hormones, hormone substitutes, and hormone antagonists ,030304 developmental biology ,medicine.drug - Abstract
Whole genome sequencing (WGS) of historical Pseudomonas aeruginosa clinical isolates identified a chromosomal copy of mcr-5 within a Tn3-like transposon in P. aeruginosa MRSN 12280. The isolate was non-susceptible to colistin by broth microdilution and genome analysis revealed no mutations known to confer colistin resistance. To the best of our knowledge this is the first report of mcr in colistin non-susceptible P. aeruginosa.
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- 2018
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24. Multidrug resistant pathogens respond differently to the presence of co-pathogen, commensal, probiotic and host cells
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Mary Hinkle, Agnes P. Chan, Emil Lesho, Jessica DePew, Yongwook Choi, Maria Kim, Lauren M. Brinkac, Derrick E. Fouts, and Radha Krishnakumar
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0301 basic medicine ,Virulence ,lcsh:Medicine ,Microbiology ,03 medical and health sciences ,Antibiotic resistance ,Staphylococcus epidermidis ,Corynebacterium jeikeium ,Drug Resistance, Multiple, Bacterial ,Humans ,Microbiome ,lcsh:Science ,Pathogen ,Cells, Cultured ,Multidisciplinary ,biology ,Bacteria ,Whole Genome Sequencing ,Host (biology) ,Gene Expression Profiling ,Probiotics ,lcsh:R ,Molecular Sequence Annotation ,Fibroblasts ,biology.organism_classification ,Coculture Techniques ,Multiple drug resistance ,030104 developmental biology ,Host-Pathogen Interactions ,Microbial Interactions ,lcsh:Q - Abstract
In light of the ongoing antimicrobial resistance crisis, there is a need to understand the role of co-pathogens, commensals, and the local microbiome in modulating virulence and antibiotic resistance. To identify possible interactions that influence the expression of virulence or survival mechanisms in both the multidrug-resistant organisms (MDROs) and human host cells, unique cohorts of clinical isolates were selected for whole genome sequencing with enhanced assembly and full annotation, pairwise co-culturing, and transcriptome profiling. The MDROs were co-cultured in pairwise combinations either with: (1) another MDRO, (2) skin commensals (Staphylococcus epidermidis and Corynebacterium jeikeium), (3) the common probiotic Lactobacillus reuteri, and (4) human fibroblasts. RNA-Seq analysis showed distinct regulation of virulence and antimicrobial resistance gene responses across different combinations of MDROs, commensals, and human cells. Co-culture assays demonstrated that microbial interactions can modulate gene responses of both the target and pathogen/commensal species, and that the responses are specific to the identity of the pathogen/commensal species. In summary, bacteria have mechanisms to distinguish between friends, foe and host cells. These results provide foundational data and insight into the possibility of manipulating the local microbiome when treating complicated polymicrobial wound, intra-abdominal, or respiratory infections.
- Published
- 2018
25. Importation, Mitigation, and Genomic Epidemiology of Candida auris at a Large Teaching Hospital
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Jodi McNamara, Patrick McGann, Mary Hinkle, Edward E. Walsh, Jean Campbell, Yoon I. Kwak, Megan Callahan, Jason Stam, Emil Lesho, Melissa Bronstein, and Rosslyn Maybank
- Subjects
0301 basic medicine ,Microbiology (medical) ,medicine.medical_specialty ,Epidemiology ,030106 microbiology ,New York ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Ultraviolet light ,Infection control ,Humans ,030212 general & internal medicine ,Hospitals, Teaching ,Index case ,Candida ,Cross Infection ,Infection Control ,Molecular epidemiology ,business.industry ,Candidiasis ,Outbreak ,Middle Aged ,Infectious Diseases ,Candida auris ,Equipment Contamination ,Female ,Contact Tracing ,business ,Contact tracing - Abstract
OBJECTIVECandida auris (CA) is an emerging multidrug-resistant pathogen associated with increased mortality. The environment may play a role, but transmission dynamics remain poorly understood. We sought to limit environmental and patient CA contamination following a sustained unsuspected exposure.DESIGNQuasi-experimental observation.SETTINGA 528-bed teaching hospital.PATIENTSThe index case patient and 17 collocated ward mates.INTERVENTIONImmediately after confirmation of CA in the bloodstream and urine of a patient admitted 6 days previously, active surveillance, enhanced transmission-based precautions, environmental cleaning with peracetic acid-hydrogen peroxide and ultraviolet light, and patient relocation were undertaken. Pre-existing agreements and foundational relationships among internal multidisciplinary teams and external partners were leveraged to bolster detection and mitigation efforts and to provide genomic epidemiology.RESULTSCandida auris was isolated from 3 of 132 surface samples on days 8, 9, and 15 of ward occupancy, and from no patient samples (0 of 48). Environmental and patient isolates were genetically identical (4–8 single-nucleotide polymorphisms [SNPs]) and most closely related to the 2013 India CA-6684 strain (~200 SNPs), supporting the epidemiological hypothesis that the source of environmental contamination was the index case patient, who probably acquired the South Asian strain from another New York hospital. All isolates contained a mutation associated with azole resistance (K163R) found in the India 2105 VPCI strain but not in CA-6684. The index patient remained colonized until death. No surfaces were CA-positive 1 month later.CONCLUSIONCompared to previous descriptions, CA dissemination was minimal. Immediate access to rapid CA diagnostics facilitates early containment strategies and outbreak investigations.Infect Control Hosp Epidemiol 2018;39:53–57
- Published
- 2017
26. Complete Genome Sequence of
- Author
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Madeline R, Galac, Jason, Stam, Rosslyn, Maybank, Mary, Hinkle, Dietrich, Mack, Holger, Rohde, Amanda L, Roth, and Paul D, Fey
- Subjects
Prokaryotes - Abstract
Staphylococcus epidermidis 1457 is a frequently utilized strain that is amenable to genetic manipulation and has been widely used for biofilm-related research. We report here the whole-genome sequence of this strain, which encodes 2,277 protein-coding genes and 81 RNAs within its 2.4-Mb genome and plasmid.
- Published
- 2017
27. Complete Genome Sequence of Staphylococcus epidermidis 1457
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Holger Rohde, Madeline R. Galac, Amanda L. Roth, Paul D. Fey, Jason Stam, Rosslyn Maybank, Mary Hinkle, and Dietrich Mack
- Subjects
0301 basic medicine ,Genetics ,Whole genome sequencing ,Strain (biology) ,030106 microbiology ,Biology ,biology.organism_classification ,Genome ,3. Good health ,03 medical and health sciences ,Plasmid ,Staphylococcus epidermidis ,Molecular Biology ,Gene ,Sequence (medicine) - Abstract
Staphylococcus epidermidis 1457 is a frequently utilized strain that is amenable to genetic manipulation and has been widely used for biofilm-related research. We report here the whole-genome sequence of this strain, which encodes 2,277 protein-coding genes and 81 RNAs within its 2.4-Mb genome and plasmid.
- Published
- 2017
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- View/download PDF
28. Analysis of Serial Isolates of mcr-1 -Positive Escherichia coli Reveals a Highly Active IS Apl1 Transposon
- Author
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Brendan W. Corey, Ana C. Ong, Erik Snesrud, Shannon Wood, Robert J. Clifford, Mary Hinkle, Yoon I. Kwak, Todd Gleeson, Patrick McGann, Timothy J. Whitman, and Emil Lesho
- Subjects
0301 basic medicine ,Pharmacology ,Transposable element ,030106 microbiology ,Biology ,medicine.disease_cause ,DNA gyrase ,Microbiology ,03 medical and health sciences ,Infectious Diseases ,Plasmid ,medicine ,Colistin ,Pharmacology (medical) ,MCR-1 ,Insertion sequence ,Gene ,Escherichia coli ,medicine.drug - Abstract
The emergence of a transferable colistin resistance gene ( mcr-1 ) is of global concern. The insertion sequence IS Apl1 is a key component in the mobilization of this gene, but its role remains poorly understood. Six Escherichia coli isolates were cultured from the same patient over the course of 1 month in Germany and the United States after a brief hospitalization in Bahrain for an unconnected illness. Four carried mcr-1 as determined by real-time PCR, but two were negative. Two additional mcr-1 -negative E. coli isolates were collected during follow-up surveillance 9 months later. All isolates were analyzed by whole-genome sequencing (WGS). WGS revealed that the six initial isolates were composed of two distinct strains: an initial ST-617 E. coli strain harboring mcr-1 and a second, unrelated, mcr-1 -negative ST-32 E. coli strain that emerged 2 weeks after hospitalization. Follow-up swabs taken 9 months later were negative for the ST-617 strain, but the mcr-1 -negative ST-32 strain was still present. mcr-1 was associated with a single copy of IS Apl1 , located on a 64.5-kb IncI2 plasmid that shared >95% homology with other mcr-1 IncI2 plasmids. IS Apl1 copy numbers ranged from 2 for the first isolate to 6 for the final isolate, but IS Apl1 movement was independent of mcr-1 . Some movement was accompanied by gene disruption, including the loss of genes encoding proteins involved in stress responses, arginine catabolism, and l -arabinose utilization. These data represent the first comprehensive analysis of IS Apl1 movement in serial clinical isolates and reveal that, under certain conditions, IS Apl1 is a highly active IS element whose movement may be detrimental to the host cell.
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- 2017
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29. Analysis of Serial Isolates of
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Erik, Snesrud, Ana C, Ong, Brendan, Corey, Yoon I, Kwak, Robert, Clifford, Todd, Gleeson, Shannon, Wood, Timothy J, Whitman, Emil P, Lesho, Mary, Hinkle, and Patrick, McGann
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DNA Topoisomerase IV ,Male ,plasmids ,Base Sequence ,Colistin ,Escherichia coli Proteins ,Microbial Sensitivity Tests ,Sequence Analysis, DNA ,Middle Aged ,mcr-1 ,Real-Time Polymerase Chain Reaction ,beta-Lactamases ,Anti-Bacterial Agents ,DNA Gyrase ,Mechanisms of Resistance ,Drug Resistance, Bacterial ,DNA Transposable Elements ,Escherichia coli ,Humans ,hormones, hormone substitutes, and hormone antagonists ,Genome, Bacterial - Abstract
The emergence of a transferable colistin resistance gene (mcr-1) is of global concern. The insertion sequence ISApl1 is a key component in the mobilization of this gene, but its role remains poorly understood. Six Escherichia coli isolates were cultured from the same patient over the course of 1 month in Germany and the United States after a brief hospitalization in Bahrain for an unconnected illness. Four carried mcr-1 as determined by real-time PCR, but two were negative. Two additional mcr-1-negative E. coli isolates were collected during follow-up surveillance 9 months later. All isolates were analyzed by whole-genome sequencing (WGS). WGS revealed that the six initial isolates were composed of two distinct strains: an initial ST-617 E. coli strain harboring mcr-1 and a second, unrelated, mcr-1-negative ST-32 E. coli strain that emerged 2 weeks after hospitalization. Follow-up swabs taken 9 months later were negative for the ST-617 strain, but the mcr-1-negative ST-32 strain was still present. mcr-1 was associated with a single copy of ISApl1, located on a 64.5-kb IncI2 plasmid that shared >95% homology with other mcr-1 IncI2 plasmids. ISApl1 copy numbers ranged from 2 for the first isolate to 6 for the final isolate, but ISApl1 movement was independent of mcr-1. Some movement was accompanied by gene disruption, including the loss of genes encoding proteins involved in stress responses, arginine catabolism, and l-arabinose utilization. These data represent the first comprehensive analysis of ISApl1 movement in serial clinical isolates and reveal that, under certain conditions, ISApl1 is a highly active IS element whose movement may be detrimental to the host cell.
- Published
- 2017
30. Erratum for McGann et al., Escherichia coli Harboring mcr-1 and blaCTX-M on a Novel IncF Plasmid: First Report of mcr-1 in the United States
- Author
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Timothy J. Whitman, Patrick McGann, Mary Hinkle, Kurt E. Schaecher, Robert J. Clifford, Brendan W. Corey, Ana C. Ong, Emil Lesho, Erik Snesrud, and Rosslyn Maybank
- Subjects
0301 basic medicine ,Pharmacology ,Errata ,030106 microbiology ,Biology ,medicine.disease_cause ,Molecular biology ,Microbiology ,Colistin resistance ,03 medical and health sciences ,Infectious Diseases ,Plasmid ,medicine ,Pharmacology (medical) ,MCR-1 ,Letters to the Editor ,Escherichia coli - Abstract
Volume 60, no. 7, p. [4420–4421][1], 2016. Page 4420, right column, line 15: the correct reference for the sequence and description of plasmid pHNSHP45-2 is not reference 1 but is as follows. Zhi C, Lv L, Yu L-F, Doi Y, Liu J-H. 2016. Dissemination of the mcr-1 colistin resistance gene. Lancet
- Published
- 2016
31. From the Battlefield to the Bedside: Supporting Warfighter and Civilian Health With the 'ART' of Whole Genome Sequencing for Antibiotic Resistance and Outbreak Investigations
- Author
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Sally Hooks, John Turco, Emil Lesho, Ana Ong, Lakshmi Appalla, Xiaoxu Lin, Fatma Onmus-Leone, Mary Hinkle, Juan A. Marin, Jered Little, Erik Snesrud, Rosslyn Maybank, Stacy Matthews, Lindsey Nielsen, Robert J. Clifford, Stephen Hyland, Paige E. Waterman, Yoon I. Kwak, and Patrick McGann
- Subjects
0301 basic medicine ,Whole genome sequencing ,medicine.medical_specialty ,Warfare ,Biomedical Research ,Whole Genome Sequencing ,business.industry ,Public health ,030106 microbiology ,Public Health, Environmental and Occupational Health ,Outbreak ,Drug Resistance, Microbial ,General Medicine ,Data science ,Genome ,Disease Outbreaks ,03 medical and health sciences ,Antibiotic resistance ,Battlefield ,Environmental health ,medicine ,Humans ,business ,Healthcare system - Abstract
Awareness, responsiveness, and throughput characterize an approach for enhancing the clinical impact of whole genome sequencing for austere environments and for large geographically dispersed health systems. This Department of Defense approach is informing interagency efforts linking antibiograms of multidrug-resistant organisms to their genome sequences in a public database.
- Published
- 2016
32. Consumption of Chlorhexidine and Mupirocin Across the Health System of the US Department of Defense (DOD) and the Incidence of the qacA/B and mupA Genes in the DOD Facilities of the National Capital Region
- Author
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Patrick McGann, Mackenzie Morgan, Uzo Chukwuma, Mary Hinkle, Sarah Gierhart, Douglas Richesson, and Emil Lesho
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Adult ,Male ,Methicillin-Resistant Staphylococcus aureus ,0301 basic medicine ,Microbiology (medical) ,Adolescent ,Hospitals, Veterans ,030106 microbiology ,National capital region ,Mupirocin ,030501 epidemiology ,Young Adult ,03 medical and health sciences ,chemistry.chemical_compound ,Environmental health ,Drug Resistance, Bacterial ,Correspondence ,Humans ,Medicine ,Child ,Aged ,Aged, 80 and over ,Consumption (economics) ,business.industry ,Incidence ,Incidence (epidemiology) ,Chlorhexidine ,Infant, Newborn ,Infant ,Middle Aged ,Staphylococcal Infections ,Drug Utilization ,United States ,Infectious Diseases ,chemistry ,Genes, Bacterial ,Child, Preschool ,Anti-Infective Agents, Local ,Female ,0305 other medical science ,business ,Multiplex Polymerase Chain Reaction ,medicine.drug - Published
- 2017
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33. Anatomic, Geographic, and Taxon-Specific Relative Risks of Carbapenem Resistance in the Health Care System of the U.S. Department of Defense
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Sarah Gierhart, Paige E. Waterman, Robert J. Clifford, Michael Sparks, Douglas Richesson, Mary Hinkle, Charlotte G. Neumann, Emil Lesho, and Uzo Chukwuma
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0301 basic medicine ,Microbiology (medical) ,Adult ,Male ,Risk ,medicine.medical_specialty ,Isolation (health care) ,Adolescent ,030106 microbiology ,medicine.disease_cause ,beta-Lactam Resistance ,Microbiology ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Enterobacteriaceae ,Environmental health ,Health care ,Military Facilities ,medicine ,Humans ,030212 general & internal medicine ,Child ,Aged ,Aged, 80 and over ,biology ,Acinetobacter ,Geography ,business.industry ,Pseudomonas aeruginosa ,Public health ,Infant, Newborn ,Infant ,Bacteriology ,Middle Aged ,biology.organism_classification ,Antimicrobial ,United States ,Anti-Bacterial Agents ,Carbapenems ,Relative risk ,Child, Preschool ,Female ,Health Facilities ,business ,Gram-Negative Bacterial Infections - Abstract
Carbapenem-resistant Pseudomonas aeruginosa, Acinetobacter spp., and Enterobacteriaceae pose urgent public health threats. The differential burden, relative risks, associations with antimicrobial consumption, and temporal trends of those taxa in large, geographically diverse U.S. health systems remain under reported. Electronic records of all patients in a geographically dispersed 280-hospital managed-care system from 2005 to 2014 were reviewed. Carbapenem-resistant strains were identified based on Clinical and Laboratory Standards Institute guidelines and breakpoints. A total of 360,000 potentially carbapenem-resistant strains were identified from 14.7 million cultures (80% infecting and 20% surveillance). Isolation of bacteria overseas or isolation from the bloodstream was associated with a higher relative risks of carbapenem resistance (CR; P < 0.0001). Enterobacteriaceae were isolated 11 times more frequently than P. aeruginosa and Acinetobacter spp. However, compared to Enterobacteriaceae , the CR levels were 73-fold and 210-fold higher in P. aeruginosa and Acinetobacter spp., respectively. Significant differences in the relative risk of CR between taxa, anatomic, and geographic locations persisted after adjustment for other variables, the biggest differences occurring between taxa. Overall, CR rates increased for Enterobacteriaceae ( P = 0.03) and decreased for Acinetobacter spp. and P. aeruginosa ( P < 0.0001). These data provide a useful baseline for resistance trending and have implications for surveillance. Infections acquired overseas and bloodstream infections are particularly important areas for continued monitoring.
- Published
- 2016
34. Prevalence of mup and qac Genes in Clinical and Surveillance Methicillin-Resistant Staphylococcus aureus (MRSA) Isolates at Two Military Treatment Facilities
- Author
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Douglas Richesson, Ana Ong, Patrick McGann, Michael Julius, Rossalyn Maybank, Mackenzie Morgan, Emil Lesho, Mary Hinkle, and Yoon I. Kwak
- Subjects
Infectious Diseases ,Oncology ,business.industry ,medicine ,medicine.disease_cause ,business ,Methicillin-resistant Staphylococcus aureus ,Microbiology - Published
- 2016
- Full Text
- View/download PDF
35. Detecting 16S rRNA Methyltransferases in Enterobacteriaceae by Use of Arbekacin
- Author
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Kerry Wilson, Patrick McGann, Rosslyn Maybank, Ana C. Ong, Michael Zapor, Yoon I. Kwak, Mary Hinkle, Sarah Chahine, Darius Okafor, and Emil Lesho
- Subjects
0301 basic medicine ,Microbiology (medical) ,Methyltransferase ,Dibekacin ,Genotype ,030106 microbiology ,Biology ,Microbiology ,03 medical and health sciences ,Anti-Infective Agents ,Enterobacteriaceae ,Disk Diffusion Antimicrobial Tests ,RNA, Ribosomal, 16S ,Drug Resistance, Bacterial ,medicine ,Humans ,Arbekacin ,Genetics ,tRNA Methyltransferases ,Aminoglycoside ,Bacteriology ,Ribosomal RNA ,16S ribosomal RNA ,biology.organism_classification ,TRNA Methyltransferases ,Phenotype ,medicine.drug - Abstract
16S rRNA methyltransferases confer resistance to most aminoglycosides, but discriminating their activity from that of aminoglycoside-modifying enzymes (AMEs) is challenging using phenotypic methods. We demonstrate that arbekacin, an aminoglycoside refractory to most AMEs, can rapidly detect 16S methyltransferase activity in Enterobacteriaceae with high specificity using the standard disk susceptibility test.
- Published
- 2015
36. Too Deep for Words : Devotions for Lent 2014
- Author
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Miller, David L., Shore, Mary Hinkle, Colville-Hanson, Joelle, Miller, David L., Shore, Mary Hinkle, and Colville-Hanson, Joelle
- Subjects
- Lent--Prayers and devotions
- Abstract
'Offers an evocative image, a reading from Paul's letter to the Romans, a quotation to ponder, a reflection, and a prayer for each day's use'--p. 3.
- Published
- 2013
37. Escherichia coli Harboring mcr-1 and bla CTX-M on a Novel IncF Plasmid: First Report of mcr-1 in the United States
- Author
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Timothy J. Whitman, Kurt E. Schaecher, Ana C. Ong, Patrick McGann, Robert J. Clifford, Rosslyn Maybank, Mary Hinkle, Brendan W. Corey, Erik Snesrud, and Emil Lesho
- Subjects
0301 basic medicine ,Pharmacology ,biology ,Escherichia coli Proteins ,education ,030106 microbiology ,medicine.disease_cause ,biology.organism_classification ,Enterobacteriaceae ,humanities ,Colistin resistance ,Microbiology ,03 medical and health sciences ,030104 developmental biology ,Infectious Diseases ,Plasmid ,medicine ,Pharmacology (medical) ,MCR-1 ,Gene ,Escherichia coli ,Bacteria - Abstract
The recent discovery of a plasmid-borne colistin resistance gene, mcr-1 , in China heralds the emergence of truly pan-drug-resistant bacteria ([1][1]). The gene has been found primarily in Escherichia coli but has also been identified in other members of the Enterobacteriaceae in human, animal, food
- Published
- 2016
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38. Assessment of Antibiotic Resistance Genes, Phenotypic Expression and Association With Antibiotic Exposure in Serial E. coli Isolates Recovered From Combat-Injured United States Military Service Members
- Author
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Lakshmi Appalla, Fatma Onmus-Leone, Clinton K. Murray, Emil Lesho, Ping Li, Erik Snesrud, Katrin Mende, Mary Hinkle, and David R. Tribble
- Subjects
Infectious Diseases ,Oncology ,business.industry ,Military service ,Antibiotic exposure ,Medicine ,business ,Phenotype ,Microbiology ,Antibiotic resistance genes ,Biotechnology - Published
- 2015
- Full Text
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39. An 11,000 Isolate Same Plate/Same Day Comparison Reveals Notable Differences Among the Three Most Widely Used Platforms for Analyzing Multidrug-Resistant Clinical Pathogens
- Author
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Lan Preston, Yoon I. Kwak, Ronald P. Rabinowitz, Mary Hinkle, Robert J. Clifford, Emil Lesho, Paige E. Waterman, and Lindsey Nielsen
- Subjects
Multiple drug resistance ,Genetics ,Infectious Diseases ,Oncology ,business.industry ,Medicine ,business - Published
- 2015
- Full Text
- View/download PDF
40. Molecular and Phenotypic Properties of Multidrug-Resistant Extraintestinal Pathogenic Escherichia coli (ExPEC) From Clinical Samples
- Author
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Paige E. Waterman, Neil Woodford, Mackenzie Morgan, Yoon I. Kwak, Patrick McGann, Fatma Onmus-Leone, Mary Hinkle, Emil Lesho, Rossalyn Maybank, Ana Ong, Lakshmi Appalla, Michel Doumith, and Erik Snesrud
- Subjects
Extraintestinal Pathogenic Escherichia coli ,Veterinary medicine ,Infectious Diseases ,Oncology ,Multi drug resistant ,Biology ,Phenotype ,Microbiology - Published
- 2015
- Full Text
- View/download PDF
41. The Burden and Relative Risk of Carbapenem-Resistant Pathogens and Correlations With Antibiotic Usage in a National Managed Care System
- Author
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Robert J. Clifford, Patrick Mc Gann, Michael Sparks, Emil Lesho, Paige E. Waterman, Mary Hinkle, Charlotte G. Neumann, and Uzo Chukwuma
- Subjects
Gerontology ,medicine.medical_specialty ,Infectious Diseases ,Oncology ,Carbapenem resistant ,medicine.drug_class ,business.industry ,Relative risk ,Antibiotics ,medicine ,Managed care ,Intensive care medicine ,business - Published
- 2015
- Full Text
- View/download PDF
42. Relations of β-Lactam Consumption, Methicillin Susceptibility and Geographical Origin With Therapeutically Problematic, Vancomycin-Susceptible Staphylococcus aureus Isolates in the Military Health System
- Author
-
Charlotte G. Neumann, Emma Milburn, Paige E. Waterman, Robert J. Clifford, Mary Hinkle, Michael Julius, Emil Lesho, Michael Sparks, and Uzo Chukwuma
- Subjects
business.industry ,medicine.disease_cause ,Microbiology ,Vancomycin susceptible Staphylococcus aureus ,chemistry.chemical_compound ,Infectious Diseases ,Oncology ,chemistry ,Staphylococcus aureus ,Military health ,medicine ,Lactam ,Vancomycin ,business ,medicine.drug - Published
- 2015
- Full Text
- View/download PDF
43. An Overview of the Molecular Epidemiology of Carbapenemase-Producing Bacteria in the US Military Health System
- Author
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Erik Snesrud, Lakshmi Appalla, Eric Steele, Uzo Chukwuma, Rosslyn Maybank, Michael Julius, Charlotte G. Neumann, Patrick Mc Gann, Fatma Onmus-Leone, Katherine Mcauliffe, Emil Lesho, Mary Hinkle, Ana Ong, Yoon I. Kwak, Paige E. Waterman, and Robert J. Clifford
- Subjects
Military personnel ,Infectious Diseases ,Oncology ,Molecular epidemiology ,business.industry ,Military health ,medicine ,Carbapenemase producing ,Medical emergency ,medicine.disease ,business - Published
- 2015
- Full Text
- View/download PDF
44. Mitigating Candida auris at a Busy Community Hospital: A Quasi-Experimental Near Real-Time Approach
- Author
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Emil Lesho, Megan Callahan, Edward E. Walsh, Mary Hinkle, Melissa Bronstein, Yoon I. Kwak, Jean Campbell, Roberto L Vargas, and Jodi McNamara
- Subjects
Operations research ,business.industry ,Poster Abstract ,medicine.disease ,Hospitals community ,Pathogenicity ,Community hospital ,Pathogenic organism ,Abstracts ,Patient referral ,Patient room ,Infectious Diseases ,Oncology ,Candida auris ,Medicine ,Medical emergency ,Work teams ,business - Abstract
Background Candida auris, an emerging multidrug-resistant pathogen associated with increased mortality, can disseminate on hospital surfaces and resist disinfection. Transmission dynamics remain poorly understood at community hospitals. Immediately following identification of a C. auris infection in an unsuspected patient admitted to a semi-private room 6 days previously, we sought to limit and determine the extent of C. auris contamination at Rochester General (RG), a 528-bed hospital in New York, using available resources. Methods The index and roommate were placed on enhanced contact precautions and moved to private rooms. Their former room was terminally cleaned with peracetic acid/hydrogen peroxide (PAHP) and UV light. Ten high-touch environmental surfaces in the new rooms of the index and roommate, the nursing stations, and throughout the ward were sampled immediately before and after, and between daily cleaning. The nares, axillae, and groin of the index, the roommate, and all concurrent ward patients were also sampled. All patients on the involved ward were sequentially moved from their initial rooms into vacated rooms that were terminally cleaned with PAHP and UV light. Prior to the index event, RG laboratory began sending all possible C. auris isolates to the state public health laboratory for confirmation, and using PAHP for all cleaning. RG also leverages preexisting agreements with other referral laboratories to support outbreak investigations. Hand-hygiene compliance averaged 80–90% on the ward. Hospital leaders, laboratory, nursing, environmental services, and local public health personnel regularly participate in infection prevention efforts. Results C. auris was isolated from 3 of 132 surface samples on the eighth, nineth, and 15th day of ward occupancy, and 0 of 48 patient samples from 18 co-located patients. The index remained colonized until death on hospital Day 21. No surfaces were C. auris-positive 1 month later. Conclusion Compared with prior reports, dissemination at RG was limited. This, the first such quantitative assessment, illustrates how community hospitals can enhance surveillance and patient safety when formal agreements, vigilance, and multi-disciplinary and interagency teamwork exist before outbreaks occur. Disclosures All authors: No reported disclosures.
- Published
- 2017
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45. THE MISSION ACCESSIBLE NEAR-EARTH OBJECTS SURVEY (MANOS): FIRST PHOTOMETRIC RESULTS
- Author
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Mary Hinkle, Francesca E. DeMeo, Mark Willman, F. J. Aceituno, David Polishook, Richard P. Binzel, Brian Burt, Eric Christensen, Nicholas Moskovitz, D. Avner, Audrey Thirouin, David E. Trilling, and Cristina A. Thomas
- Subjects
Earth and Planetary Astrophysics (astro-ph.EP) ,education.field_of_study ,Near-Earth object ,010504 meteorology & atmospheric sciences ,Population ,FOS: Physical sciences ,Astronomy ,Astronomy and Astrophysics ,01 natural sciences ,Weak correlation ,Space and Planetary Science ,0103 physical sciences ,education ,010303 astronomy & astrophysics ,Geology ,Astrophysics - Earth and Planetary Astrophysics ,0105 earth and related environmental sciences - Abstract
The Mission Accessible Near-Earth Objects Survey (MANOS) aims to physically characterize sub-km Near-Earth Objects (NEOs). We report first photometric results from the survey which began in August, 2013. Photometric observations were performed using 1 m to 4 m class telescopes around the world. We present rotational periods and lightcurve amplitudes for 86 sub-km NEOs, though in some cases, only lower limits are provided. Our main goal is to obtain lightcurves for small NEOs (typically, sub-km objects) and estimate their rotational periods, lightcurve amplitudes, and shapes. These properties are used for statistical study to constrain overall properties of the NEO population. A weak correlation seems to indicate that smaller objects are more spherical than the larger ones. We also report 7 NEOs that are fully characterized (lightcurve and visible spectra) as the most suitable candidates for a future human or robotic mission. Viable mission targets are objects fully characterized, with a Delta_v(NHATS) 1h. Assuming a similar rate of object characterization as reported in this paper, approximately 1,230 NEOs need to be characterized in order to find 100 viable mission targets., Accepted for publication in The Astronomical Journal
- Published
- 2016
- Full Text
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46. Living by the word: up and out
- Author
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Shore, Mary Hinkle
- Subjects
Philosophy and religion ,Analysis - Abstract
Sunday, May 20 Luke 24:44-53 A WORSHIP PROFESSOR voices frustration at students who conclude a Gospel reading with 'Here ends the Gospel.' 'The gospel doesn't end,' my colleague insists. 'The [...]
- Published
- 2007
47. Living by the word: poolside healing
- Author
-
Shore, Mary Hinkle
- Subjects
Spiritual healing -- Analysis ,Philosophy and religion ,Analysis - Abstract
Sunday, May 13 John 5:1-9 IN JOHN 5, festival scenes in the holy city are juxtaposed with the view of five porticoes full of invalids. Imagine dropping by the nursing [...]
- Published
- 2007
48. Visible Spectroscopy from the Mission Accessible Near-Earth Object Survey (MANOS): Taxonomic Dependence on Asteroid Size.
- Author
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Maxime Devogèle, Nicholas Moskovitz, Audrey Thirouin, Annika Gustaffson, Mitchell Magnuson, Cristina Thomas, Mark Willman, Eric Christensen, Michael Person, Richard Binzel, David Polishook, Francesca DeMeo, Mary Hinkle, David Trilling, Michael Mommert, Brian Burt, and Brian Skiff
- Published
- 2019
- Full Text
- View/download PDF
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