Search

Methane-cycling is becoming more important in high-latitude ecosystems as global warming makes permafrost organic carbon increasingly available. We explored 387 samples from three high-latitudes regions (Siberia, Alaska and Patagonia) focusing on mineral/organic soils (wetlands, peatlands, forest), lake/pond sediment and water. Physicochemical, climatic and geographic variables were integrated with 16S rDNA amplicon sequences to determine the structure of the overall microbial communities and of specific methanogenic and methanotrophic guilds. Physicochemistry (especially pH) explained the largest proportion of variation in guild composition, confirming species sorting (i.e., environmental filtering) as a key mechanism in microbial assembly. Geographic distance impacted more strongly beta diversity for (i) methanogens and methanotrophs than the overall prokaryotes and, (ii) the sediment habitat, suggesting that dispersal limitation contributed to shape the communities of methane-cycling microorganisms. Bioindicator taxa characterising different ecological niches (i.e., specific combinations of geographic, climatic and physicochemical variables) were identified, highlighting the importance of Methanoregula as generalist methanogens. Methylocystis and Methylocapsa were key methanotrophs in low pH niches while Methylobacter and Methylomonadaceae in neutral environments. This work gives insight into the present and projected distribution of methane-cycling microbes at high latitudes under climate change predictions, which is crucial for constraining their impact on greenhouse gas budgets., (© 2023 The Authors. Environmental Microbiology published by Applied Microbiology International and John Wiley & Sons Ltd.)

Peatland pools are freshwater bodies that are highly dynamic aquatic ecosystems because of their small size and their development in organic-rich sediments. However, our ability to understand and predict their contribution to both local and global biogeochemical cycles under rapidly occurring environmental change is limited because the spatiotemporal drivers of their biogeochemical patterns and processes are poorly understood. We used (1) pool biogeochemical data from 20 peatlands in eastern Canada, the United Kingdom, and southern Patagonia and (2) multi-year data from an undisturbed peatland of eastern Canada, to determine how climate and terrain features drive the production, delivering and processing of carbon (C), nitrogen (N), and phosphorus (P) in peatland pools. Across sites, climate (24%) and terrain (13%) explained distinct portions of the variation in pool biogeochemistry, with climate driving spatial differences in pool dissolved organic C (DOC) concentration and aromaticity. Within the multi-year dataset, DOC, carbon dioxide (CO 2 ), total N concentrations, and DOC aromaticity were highest in the shallowest pools and at the end of the growing seasons, and increased gradually from 2016 to 2021 in relation to a combination of increases in summer precipitation, mean air temperature for the previous fall, and number of extreme summer heat days. Given the contrasting effects of terrain and climate, broad-scale terrain characteristics may offer a baseline for the prediction of small-scale pool biogeochemistry, while broad-scale climate gradients and relatively small year-to-year variations in local climate induce a noticeable response in pool biogeochemistry. These findings emphasize the reactivity of peatland pools to both local and global environmental change and highlight their potential to act as widely distributed climate sentinels within historically relatively stable peatland ecosystems., (© 2023 The Authors. Global Change Biology published by John Wiley & Sons Ltd.)

Freshwater ecosystems are important contributors to the global greenhouse gas budget and a comprehensive assessment of their role in the context of global warming is essential. Despite many reports on freshwater ecosystems, relatively little attention has been given so far to those located in the southern hemisphere and our current knowledge is particularly poor regarding the methane cycle in non-perennially glaciated lakes of the maritime Antarctica. We conducted a high-resolution study of the methane and carbon dioxide cycle in a lake of the Fildes Peninsula, King George Island (Lat. 62°S), and a succinct characterization of 10 additional lakes and ponds of the region. The study, done during the ice-free and the ice-seasons, included methane and carbon dioxide exchanges with the atmosphere (both from water and surrounding soils) and the dissolved concentration of these two gases throughout the water column. This characterization was complemented with an ex-situ analysis of the microbial activities involved in the methane cycle, including methanotrophic and methanogenic activities as well as the methane-related marker gene abundance, in water, sediments and surrounding soils. The results showed that, over an annual cycle, the freshwater ecosystems of the region are dominantly autotrophic and that, despite low but omnipresent atmospheric methane emissions, they act as greenhouse gas sinks., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 Elsevier B.V. All rights reserved.)

High latitudes are experiencing intense ecosystem changes with climate warming. The underlying methane (CH 4 ) cycling dynamics remain unresolved, despite its crucial climatic feedback. Atmospheric CH 4 emissions are heterogeneous, resulting from local geochemical drivers, global climatic factors, and microbial production/consumption balance. Holistic studies are mandatory to capture CH 4 cycling complexity. Here, we report a large set of integrated microbial and biogeochemical data from 387 samples, using a concerted sampling strategy and experimental protocols. The study followed international standards to ensure inter-comparisons of data amongst three high-latitude regions: Alaska, Siberia, and Patagonia. The dataset encompasses different representative environmental features (e.g. lake, wetland, tundra, forest soil) of these high-latitude sites and their respective heterogeneity (e.g. characteristic microtopographic patterns). The data included physicochemical parameters, greenhouse gas concentrations and emissions, organic matter characterization, trace elements and nutrients, isotopes, microbial quantification and composition. This dataset addresses the need for a robust physicochemical framework to conduct and contextualize future research on the interactions between climate change, biogeochemical cycles and microbial communities at high-latitudes., (© 2022. The Author(s).)

Freshwater ecosystems are responsible for an important part of the methane (CH 4 ) emissions which are likely to change with global warming. This study aims to evaluate temperature-induced (from 5 to 20 °C) changes on microbial community structure and methanogenic pathways in five sub-Antarctic lake sediments from Magallanes strait to Cape Horn, Chile. We combined in situ CH 4 flux measurements, CH 4 production rates (MPRs), gene abundance quantification and microbial community structure analysis (metabarcoding of the 16S rRNA gene). Under unamended conditions, a temperature increase of 5 °C doubled MPR while microbial community structure was not affected. Stimulation of methanogenesis by methanogenic precursors as acetate and H 2 /CO 2 , resulted in an increase of MPRs up to 127-fold and 19-fold, respectively, as well as an enrichment of mcrA-carriers strikingly stronger under acetate amendment. At low temperatures, H 2 /CO 2 -derived MPRs were considerably lower (down to 160-fold lower) than the acetate-derived MPRs, but the contribution of hydrogenotrophic methanogenesis increased with temperature. Temperature dependence of MPRs was significantly higher in incubations spiked with H 2 /CO 2 (c. 1.9 eV) compared to incubations spiked with acetate or unamended (c. 0.8 eV). Temperature was not found to shape the total microbial community structure, that rather exhibited a site-specific variability among the studied lakes. However, the methanogenic archaeal community structure was driven by amended methanogenic precursors with a dominance of Methanobacterium in H 2 /CO 2 -based incubations and Methanosarcina in acetate-based incubations. We also suggested the importance of acetogenic H 2 -production outcompeting hydrogenotrohic methanogenesis especially at low temperatures, further supported by homoacetogen proportion in the microcosm communities. The combination of in situ-, and laboratory-based measurements and molecular approaches indicates that the hydrogenotrophic pathway may become more important with increasing temperatures than the acetoclastic pathway. In a continuously warming environment driven by climate change, such issues are crucial and may receive more attention., (Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.)

A previously developed surface probe method, which allows for instantaneous methane (CH 4 ) flux measurement, was used to establish CH 4 emission maps of a municipal landfill with a final clay cover and equipped with a gas recollection system. In addition to spatial variations, the method was applied at 7 different times over a total timeframe of 65 h and under similar weather conditions to determine the intrinsic temporal variations of CH 4 emissions; i.e., the temporal variation related to the dynamic of the landfill rather than the one driven by external factors. Furthermore, continuous CH 4 fluxes, with a data acquisition frequency of 1 Hz, were measured during 12 h at a single position, and for one hour at 22 locations of the landfill, spanning a large range of CH 4 emission magnitudes. A simple model for the numerical characterization of spatiotemporal variability of the landfill emission was used and allowed us to separately quantify the temporal and spatial variability. This model showed that, in the landfill tested, the temporal distribution of CH 4 emissions resulted more homogeneous than the spatial distribution. Other attributes of the temporal and spatial distributions of CH 4 emissions were also established including the anisotropic nature of the spatial distribution and, contrastingly, the stochastic temporal variability of such emissions., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier Ltd. All rights reserved.)

Arctic lakes emit methane (CH 4 ) to the atmosphere. The magnitude of this flux could increase with permafrost thaw but might also be mitigated by microbial CH 4 oxidation. Methane oxidation in oxic water has been extensively studied, while the contribution of anaerobic oxidation of methane (AOM) to CH 4 mitigation is not fully understood. We have investigated four Northern Siberian stratified lakes in an area of discontinuous permafrost nearby Igarka, Russia. Analyses of CH 4 concentrations in the water column demonstrated that 60 to 100% of upward diffusing CH 4 was oxidized in the anoxic layers of the four lakes. A combination of pmoA and mcrA gene qPCR and 16S rRNA gene metabarcoding showed that the same taxa, all within Methylomonadaceae and including the predominant genus Methylobacter as well as Crenothrix, could be the major methane-oxidizing bacteria (MOB) in the anoxic water of the four lakes. Correlation between Methylomonadaceae and OTUs within Methylotenera, Geothrix and Geobacter genera indicated that AOM might occur in an interaction between MOB, denitrifiers and iron-cycling partners. We conclude that MOB within Methylomonadaceae could have a crucial impact on CH 4 cycling in these Siberian Arctic lakes by mitigating the majority of produced CH 4 before it leaves the anoxic zone. This finding emphasizes the importance of AOM by Methylomonadaceae and extends our knowledge about CH 4 cycle in lakes, a crucial component of the global CH 4 cycle., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 The Authors. Published by Elsevier B.V. All rights reserved.)

It is commonly assumed that methane (CH 4 ) released by lakes into the atmosphere is mainly produced in anoxic sediment and transported by diffusion or ebullition through the water column to the surface of the lake. In contrast to that prevailing idea, it has been gradually established that the epilimnetic CH 4 does not originate exclusively from sediments but is also locally produced or laterally transported from the littoral zone. Therefore, CH 4 cycling in the epilimnion and the hypolimnion might not be as closely linked as previously thought. We utilized a high-resolution method used to determine dissolved CH 4 concentration to analyze a Siberian lake in which epilimnetic and hypolimnetic CH 4 cycles were fully segregated by a section of the water column where CH 4 was not detected. This layer, with no detected CH 4 , was well below the oxycline and the photic zone and thus assumed to be anaerobic. However, on the basis of a diffusion-reaction model, molecular biology, and stable isotope analyses, we determined that this layer takes up all the CH 4 produced in the sediments and the deepest section of the hypolimnion. We concluded that there was no CH 4 exchange between the hypolimnion (dominated by methanotrophy and methanogenesis) and the epilimnion (dominated by methane lateral transport and/or oxic production), resulting in a vertically segregated lake internal CH 4 cycle.

Anaerobic oxidation of methane (AOM) is a microbial process that consumes dissolved methane (CH 4 ) in anoxic sediments and soils and mitigates CH 4 release to the atmosphere. The degree to which AOM limits global biospheric CH 4 emissions is not fully understood. In marine sediments, where the process was first described, AOM is responsible for oxidizing >90% of the CH 4 produced. More recently, AOM has been observed in soils, peatlands, and freshwater ecosystems. In lakes, where sediment anoxia, organic carbon turnover, and CH 4 production are common, AOM is not well studied but could represent a significant CH 4 sink and constraint on emissions. Here, we present evidence for the occurrence of AOM in the sediment of thirteen lakes that span a global climatic and trophic gradient. We further quantified and modeled AOM patterns and studied potential microbial controls of AOM using laboratory incubations of sediment and stable isotope measurements in three of the thirteen lakes. We demonstrate that AOM is widespread in freshwater lake sediments and accounts for 29%-34% (95% confidence interval) of the mean total CH 4 produced in surface and near-surface lake sediments., (Copyright © 2018 Elsevier Ltd. All rights reserved.)

Net methane (CH 4 ) emission from lakes depends on two antagonistic processes: CH 4 production (methanogenesis) and CH 4 oxidation (methanotrophy). It is unclear how climate warming will affect the balance between these processes, particularly among lakes of different trophic status. Here we show that methanogenesis is more sensitive to temperature than methanotrophy, and that eutrophication magnifies this temperature sensitivity. Using laboratory incubations of water and sediment from ten tropical, temperate and subarctic lakes with contrasting trophic states, ranging from oligotrophic to hypereutrophic, we explored the temperature sensitivity of methanogenesis and methanotrophy. We found that both processes presented a higher temperature sensitivity in tropical lakes, followed by temperate, and subarctic lakes; but more importantly, we found that eutrophication triggered a higher temperature sensitivity. A model fed by our empirical data revealed that increasing lake water temperature by 2 °C leads to a net increase in CH 4 emissions by 101-183% in hypereutrophic lakes and 47-56% in oligotrophic lakes. We conclude that climate warming will tilt the CH 4 balance towards higher lake emission and that this impact will be exacerbated by the eutrophication of the lakes., (Copyright © 2018 Elsevier B.V. All rights reserved.)

Anaerobic oxidation of methane (AOM) is a biological process that plays an important role in reducing the CH 4 emissions from a wide range of ecosystems. Arctic and sub-Arctic lakes are recognized as significant contributors to global methane (CH 4 ) emission, since CH 4 production is increasing as permafrost thaws and provides fuels for methanogenesis. Methanotrophy, including AOM, is critical to reducing CH 4 emissions. The identity, activity, and metabolic processes of anaerobic methane oxidizers are poorly understood, yet this information is critical to understanding CH 4 cycling and ultimately to predicting future CH 4 emissions. This study sought to identify the microorganisms involved in AOM in sub-Arctic lake sediments using DNA- and phospholipid-fatty acid (PLFA)- based stable isotope probing. Results indicated that aerobic methanotrophs belonging to the genus Methylobacter assimilate carbon from CH 4 , either directly or indirectly. Other organisms that were found, in minor proportions, to assimilate CH 4 -derived carbon were methylotrophs and iron reducers, which might indicate the flow of CH 4 -derived carbon from anaerobic methanotrophs into the broader microbial community. While various other taxa have been reported in the literature to anaerobically oxidize methane in various environments (e.g. ANME-type archaea and Methylomirabilis Oxyfera), this report directly suggest that Methylobacter can perform this function, expanding our understanding of CH 4 oxidation in anaerobic lake sediments., (Copyright © 2017. Published by Elsevier B.V.)

A novel low-cost method for the combined, real-time, and in situ determination of dissolved methane and carbon dioxide concentrations in freshwater ecosystems was designed and developed. This method is based on the continuous sampling of water from a freshwater ecosystem to a gas/liquid exchange membrane. Dissolved gas is transferred through the membrane to a continuous flow of high purity nitrogen, which is then measured by an off-axis integrated cavity output spectrometer (OA-ICOS). This method, called M-ICOS, was carefully tested in a laboratory and was subsequently applied to four lakes in Mexico and Alaska with contrasting climates, ecologies, and morphologies. The M-ICOS method allowed for the determination of dissolved methane and carbon dioxide concentrations with a frequency of 1 Hz and with a method detection limit of 2.76 × 10(-10) mol L(-1) for methane and 1.5 × 10(-7) mol L(-1) for carbon dioxide. These detection limits are below saturated concentrations with respect to the atmosphere and significantly lower than the minimum concentrations previously reported in lakes. The method is easily operable by a single person from a small boat, and the small size of the suction probe allows the determination of dissolved gases with a minimized impact on shallow freshwater ecosystems.

Methanogenic activity (MA) tests are commonly carried out to estimate the capability of anaerobic biomass to treat effluents, to evaluate anaerobic activity in bioreactors or natural ecosystems, or to quantify inhibitory effects on methanogenic activity. These activity tests are usually based on the measurement of the volume of biogas produced by volumetric, pressure increase or gas chromatography (GC) methods. In this study, we present an alternative method for non-invasive measurement of methane produced during activity tests in closed vials, based on Infrared Tunable Diode Laser Absorption Spectroscopy (MA-TDLAS). This new method was tested during model acetoclastic and hydrogenotrophic methanogenic activity tests and was compared to a more traditional method based on gas chromatography. From the results obtained, the CH(4) detection limit of the method was estimated to 60 ppm and the minimum measurable methane production rate was estimated to 1.09(.)10(-3) mg l(-1) h(-1), which is below CH(4) production rate usually reported in both anaerobic reactors and natural ecosystems. Additionally to sensitivity, the method has several potential interests compared to more traditional methods among which short measurements time allowing the measurement of a large number of MA test vials, non-invasive measurements avoiding leakage or external interferences and similar cost to GC based methods. It is concluded that MA-TDLAS is a promising method that could be of interest not only in the field of anaerobic digestion but also, in the field of environmental ecology where CH(4) production rates are usually very low., (Copyright © 2012 Elsevier B.V. All rights reserved.)