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835 results on '"Martin, Darren P."'

1. African army ants at the forefront of virome surveillance in a remote tropical forest

Author

Fritz, Matthieu, Reggiardo, Bérénice, Filloux, Denis, Claude, Lisa, Fernandez, Emmanuel, Mahé, Frédéric, Kraberger, Simona, Custer, Joy M., Becquart, Pierre, Mebaley, Telstar Ndong, Kombila, Linda Bohou, Lenguiya, Léadisaelle H., Boundenga, Larson, Mombo, Illich M., Maganga, Gael D., Niama, Fabien R., Koumba, Jean-Sylvain, Ogliastro, Mylène, Yvon, Michel, Martin, Darren P., Blanc, Stéphane, Varsani, Arvind, Leroy, Eric, and Roumagnac, Philippe

Subjects
Archaeology, CC1-960, Science
Abstract

In this study, we used a predator-enabled metagenomics strategy to sample the virome of a remote and difficult-to-access densely forested African tropical region. Specifically, we focused our study on the use of army ants of the genus Dorylus that are obligate collective foragers and group predators that attack and overwhelm a broad array of animal prey. Using 209 army ant samples collected from 29 colonies and the virion-associated nucleic acid-based metagenomics approach, we showed that a broad diversity of bacterial, plant, invertebrate and vertebrate viral sequences were accumulated by army ants: including sequences from 157 different viral genera in 56 viral families. This suggests that using predators and scavengers such as army ants to sample broad swathes of tropical forest viromes can shed light on the composition and the structure of viral populations of these complex and inaccessible ecosystems.

Published
2023
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3. Detection of SARS-CoV-2 intra-host recombination during superinfection with Alpha and Epsilon variants in New York City

Author

Wertheim, Joel O, Wang, Jade C, Leelawong, Mindy, Martin, Darren P, Havens, Jennifer L, Chowdhury, Moinuddin A, Pekar, Jonathan E, Amin, Helly, Arroyo, Anthony, Awandare, Gordon A, Chow, Hoi Yan, Gonzalez, Edimarlyn, Luoma, Elizabeth, Morang’a, Collins M, Nekrutenko, Anton, Shank, Stephen D, Silver, Stefan, Quashie, Peter K, Rakeman, Jennifer L, Ruiz, Victoria, Torian, Lucia V, Vasylyeva, Tetyana I, Kosakovsky Pond, Sergei L, and Hughes, Scott

Subjects
Microbiology, Biological Sciences, Bioinformatics and Computational Biology, Genetics, Biotechnology, Human Genome, Vaccine Related, Infectious Diseases, Emerging Infectious Diseases, Prevention, Biodefense, Lung, Pneumonia, Aetiology, 2.1 Biological and endogenous factors, Infection, Good Health and Well Being, COVID-19, Genome, Viral, Humans, New York City, Recombination, Genetic, SARS-CoV-2, Spike Glycoprotein, Coronavirus, Superinfection
Abstract

Recombination is an evolutionary process by which many pathogens generate diversity and acquire novel functions. Although a common occurrence during coronavirus replication, detection of recombination is only feasible when genetically distinct viruses contemporaneously infect the same host. Here, we identify an instance of SARS-CoV-2 superinfection, whereby an individual was infected with two distinct viral variants: Alpha (B.1.1.7) and Epsilon (B.1.429). This superinfection was first noted when an Alpha genome sequence failed to exhibit the classic S gene target failure behavior used to track this variant. Full genome sequencing from four independent extracts reveals that Alpha variant alleles comprise around 75% of the genomes, whereas the Epsilon variant alleles comprise around 20% of the sample. Further investigation reveals the presence of numerous recombinant haplotypes spanning the genome, specifically in the spike, nucleocapsid, and ORF 8 coding regions. These findings support the potential for recombination to reshape SARS-CoV-2 genetic diversity.

Published
2022

4. The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages

Author

Martin, Darren P, Weaver, Steven, Tegally, Houriiyah, San, James Emmanuel, Shank, Stephen D, Wilkinson, Eduan, Lucaci, Alexander G, Giandhari, Jennifer, Naidoo, Sureshnee, Pillay, Yeshnee, Singh, Lavanya, Lessells, Richard J, NGS-SA, UK, COVID-19 Genomics, Gupta, Ravindra K, Wertheim, Joel O, Nekturenko, Anton, Murrell, Ben, Harkins, Gordon W, Lemey, Philippe, MacLean, Oscar A, Robertson, David L, de Oliveira, Tulio, and Pond, Sergei L Kosakovsky

Subjects
Biological Sciences, Evolutionary Biology, Prevention, Vaccine Related, Emerging Infectious Diseases, Infectious Diseases, Pneumonia, Biodefense, Lung, Infection, Good Health and Well Being, Amino Acid Sequence, COVID-19, Codon, Evolution, Molecular, Genes, Viral, Genetic Drift, Host Adaptation, Humans, Immune Evasion, Mutation, Pandemics, Phylogeny, Public Health, SARS-CoV-2, NGS-SA, COVID-19 Genomics UK, COVID 19, convergent mutations, directional selection, diversifying selection, evolutionary adaptation, immune evasion, lineage-defining mutations, positive selection, recurrent mutations, transmission advantage, Medical and Health Sciences, Developmental Biology, Biological sciences, Biomedical and clinical sciences
Abstract

The independent emergence late in 2020 of the B.1.1.7, B.1.351, and P.1 lineages of SARS-CoV-2 prompted renewed concerns about the evolutionary capacity of this virus to overcome public health interventions and rising population immunity. Here, by examining patterns of synonymous and non-synonymous mutations that have accumulated in SARS-CoV-2 genomes since the pandemic began, we find that the emergence of these three "501Y lineages" coincided with a major global shift in the selective forces acting on various SARS-CoV-2 genes. Following their emergence, the adaptive evolution of 501Y lineage viruses has involved repeated selectively favored convergent mutations at 35 genome sites, mutations we refer to as the 501Y meta-signature. The ongoing convergence of viruses in many other lineages on this meta-signature suggests that it includes multiple mutation combinations capable of promoting the persistence of diverse SARS-CoV-2 lineages in the face of mounting host immune recognition.

Published
2021

7. HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens

Author

Fischer, Will, Giorgi, Elena E, Chakraborty, Srirupa, Nguyen, Kien, Bhattacharya, Tanmoy, Theiler, James, Goloboff, Pablo A, Yoon, Hyejin, Abfalterer, Werner, Foley, Brian T, Tegally, Houriiyah, San, James Emmanuel, de Oliveira, Tulio, Africa, Network for Genomic Surveillance in South, Wilkinson, Eduan, Msomi, Nokukhanya, Iranzadeh, Arash, Fonseca, Vagner, Doolabh, Deelan, Mlisana, Koleka, von Gottberg, Anne, Walaza, Sibongile, Allam, Mushal, Ismail, Arshad, Mohale, Thabo, Glass, Allison J, Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolfgang, Petruccione, Francesco, Sigal, Alex, Hardie, Diana, Marais, Gert, Hsiao, Marvin, Korsman, Stephen, Davies, Mary-Ann, Tyers, Lynn, Mudau, Innocent, York, Denis, Maslo, Caroline, Goedhals, Dominique, Abrahams, Shareef, Laguda-Akingba, Oluwakemi, Alisoltani-Dehkordi, Arghavan, Godzik, Adam, Wibmer, Constantinos Kurt, Sewell, Bryan Trevor, Lourenço, José, Pond, Sergei L Kosakovsky, Weaver, Steven, Giovanetti, Marta, Alcantara, Luiz Carlos Junior, Martin, Darren, Bhiman, Jinal N, Williamson, Carolyn, Gnanakaran, Sandrasegaram, and Korber, Bette

Subjects
Medical Microbiology, Biomedical and Clinical Sciences, Biological Sciences, Pneumonia, Vaccine Related, Emerging Infectious Diseases, Prevention, Genetics, Lung, HIV/AIDS, Infectious Diseases, Infection, Good Health and Well Being, COVID-19, Evolution, Molecular, Genome, Viral, HIV-1, Humans, Immune Evasion, Mutation, Pandemics, Receptors, Virus, Recombination, Genetic, SARS-CoV-2, Selection, Genetic, Spike Glycoprotein, Coronavirus, Viral Proteins, Network for Genomic Surveillance in South Africa, evolution, glycosylation, immune escape, insertions and deletions, recombination, Microbiology, Immunology, Biochemistry and cell biology, Medical microbiology
Abstract

Humanity is currently facing the challenge of two devastating pandemics caused by two very different RNA viruses: HIV-1, which has been with us for decades, and SARS-CoV-2, which has swept the world in the course of a single year. The same evolutionary strategies that drive HIV-1 evolution are at play in SARS-CoV-2. Single nucleotide mutations, multi-base insertions and deletions, recombination, and variation in surface glycans all generate the variability that, guided by natural selection, enables both HIV-1's extraordinary diversity and SARS-CoV-2's slower pace of mutation accumulation. Even though SARS-CoV-2 diversity is more limited, recently emergent SARS-CoV-2 variants carry Spike mutations that have important phenotypic consequences in terms of both antibody resistance and enhanced infectivity. We review and compare how these mutational patterns manifest in these two distinct viruses to provide the variability that fuels their evolution by natural selection.

Published
2021

9. Symptom evolution following the emergence of maize streak virus.

Author

Monjane, Adérito L, Dellicour, Simon, Hartnady, Penelope, Oyeniran, Kehinde A, Owor, Betty E, Bezuidenhout, Marion, Linderme, Daphné, Syed, Rizwan A, Donaldson, Lara, Murray, Shane, Rybicki, Edward P, Kvarnheden, Anders, Yazdkhasti, Elham, Lefeuvre, Pierre, Froissart, Rémy, Roumagnac, Philippe, Shepherd, Dionne N, Harkins, Gordon W, Suchard, Marc A, Lemey, Philippe, Varsani, Arvind, and Martin, Darren P

Subjects
chlorosis, evolutionary biology, evolutionary trade-off, maize, pathogenicity, virulence, virus, Biochemistry and Cell Biology
Abstract

For pathogens infecting single host species evolutionary trade-offs have previously been demonstrated between pathogen-induced mortality rates and transmission rates. It remains unclear, however, how such trade-offs impact sub-lethal pathogen-inflicted damage, and whether these trade-offs even occur in broad host-range pathogens. Here, we examine changes over the past 110 years in symptoms induced in maize by the broad host-range pathogen, maize streak virus (MSV). Specifically, we use the quantified symptom intensities of cloned MSV isolates in differentially resistant maize genotypes to phylogenetically infer ancestral symptom intensities and check for phylogenetic signal associated with these symptom intensities. We show that whereas symptoms reflecting harm to the host have remained constant or decreased, there has been an increase in how extensively MSV colonizes the cells upon which transmission vectors feed. This demonstrates an evolutionary trade-off between amounts of pathogen-inflicted harm and how effectively viruses position themselves within plants to enable onward transmission.

Published
2020

10. Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa

Author

Tegally, Houriiyah, Moir, Monika, Everatt, Josie, Giovanetti, Marta, Scheepers, Cathrine, Wilkinson, Eduan, Subramoney, Kathleen, Makatini, Zinhle, Moyo, Sikhulile, Amoako, Daniel G., Baxter, Cheryl, Althaus, Christian L., Anyaneji, Ugochukwu J., Kekana, Dikeledi, Viana, Raquel, Giandhari, Jennifer, Lessells, Richard J., Maponga, Tongai, Maruapula, Dorcas, Choga, Wonderful, Matshaba, Mogomotsi, Mbulawa, Mpaphi B., Msomi, Nokukhanya, Naidoo, Yeshnee, Pillay, Sureshnee, Sanko, Tomasz Janusz, San, James E., Scott, Lesley, Singh, Lavanya, Magini, Nonkululeko A., Smith-Lawrence, Pamela, Stevens, Wendy, Dor, Graeme, Tshiabuila, Derek, Wolter, Nicole, Preiser, Wolfgang, Treurnicht, Florette K., Venter, Marietjie, Chiloane, Georginah, McIntyre, Caitlyn, O’Toole, Aine, Ruis, Christopher, Peacock, Thomas P., Roemer, Cornelius, Kosakovsky Pond, Sergei L., Williamson, Carolyn, Pybus, Oliver G., Bhiman, Jinal N., Glass, Allison, Martin, Darren P., Jackson, Ben, Rambaut, Andrew, Laguda-Akingba, Oluwakemi, Gaseitsiwe, Simani, von Gottberg, Anne, and de Oliveira, Tulio

Published
2022
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12. Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

Author

Viana, Raquel, Moyo, Sikhulile, Amoako, Daniel G., Tegally, Houriiyah, Scheepers, Cathrine, Althaus, Christian L., Anyaneji, Ugochukwu J., Bester, Phillip A., Boni, Maciej F., Chand, Mohammed, Choga, Wonderful T., Colquhoun, Rachel, Davids, Michaela, Deforche, Koen, Doolabh, Deelan, du Plessis, Louis, Engelbrecht, Susan, Everatt, Josie, Giandhari, Jennifer, Giovanetti, Marta, Hardie, Diana, Hill, Verity, Hsiao, Nei-Yuan, Iranzadeh, Arash, Ismail, Arshad, Joseph, Charity, Joseph, Rageema, Koopile, Legodile, Kosakovsky Pond, Sergei L., Kraemer, Moritz U. G., Kuate-Lere, Lesego, Laguda-Akingba, Oluwakemi, Lesetedi-Mafoko, Onalethatha, Lessells, Richard J., Lockman, Shahin, Lucaci, Alexander G., Maharaj, Arisha, Mahlangu, Boitshoko, Maponga, Tongai, Mahlakwane, Kamela, Makatini, Zinhle, Marais, Gert, Maruapula, Dorcas, Masupu, Kereng, Matshaba, Mogomotsi, Mayaphi, Simnikiwe, Mbhele, Nokuzola, Mbulawa, Mpaphi B., Mendes, Adriano, Mlisana, Koleka, Mnguni, Anele, Mohale, Thabo, Moir, Monika, Moruisi, Kgomotso, Mosepele, Mosepele, Motsatsi, Gerald, Motswaledi, Modisa S., Mphoyakgosi, Thongbotho, Msomi, Nokukhanya, Mwangi, Peter N., Naidoo, Yeshnee, Ntuli, Noxolo, Nyaga, Martin, Olubayo, Lucier, Pillay, Sureshnee, Radibe, Botshelo, Ramphal, Yajna, Ramphal, Upasana, San, James E., Scott, Lesley, Shapiro, Roger, Singh, Lavanya, Smith-Lawrence, Pamela, Stevens, Wendy, Strydom, Amy, Subramoney, Kathleen, Tebeila, Naume, Tshiabuila, Derek, Tsui, Joseph, van Wyk, Stephanie, Weaver, Steven, Wibmer, Constantinos K., Wilkinson, Eduan, Wolter, Nicole, Zarebski, Alexander E., Zuze, Boitumelo, Goedhals, Dominique, Preiser, Wolfgang, Treurnicht, Florette, Venter, Marietje, Williamson, Carolyn, Pybus, Oliver G., Bhiman, Jinal, Glass, Allison, Martin, Darren P., Rambaut, Andrew, Gaseitsiwe, Simani, von Gottberg, Anne, and de Oliveira, Tulio

Published
2022
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13. Altered TMPRSS2 usage by SARS-CoV-2 Omicron impacts infectivity and fusogenicity

Author

Meng, Bo, Abdullahi, Adam, Ferreira, Isabella A. T. M., Goonawardane, Niluka, Saito, Akatsuki, Kimura, Izumi, Yamasoba, Daichi, Gerber, Pehuén Pereyra, Fatihi, Saman, Rathore, Surabhi, Zepeda, Samantha K., Papa, Guido, Kemp, Steven A., Ikeda, Terumasa, Toyoda, Mako, Tan, Toong Seng, Kuramochi, Jin, Mitsunaga, Shigeki, Ueno, Takamasa, Shirakawa, Kotaro, Takaori-Kondo, Akifumi, Brevini, Teresa, Mallery, Donna L., Charles, Oscar J., Bowen, John E., Joshi, Anshu, Walls, Alexandra C., Jackson, Laurelle, Martin, Darren, Smith, Kenneth G. C., Bradley, John, Briggs, John A. G., Choi, Jinwook, Madissoon, Elo, Meyer, Kerstin B., Mlcochova, Petra, Ceron-Gutierrez, Lourdes, Doffinger, Rainer, Teichmann, Sarah A., Fisher, Andrew J., Pizzuto, Matteo S., de Marco, Anna, Corti, Davide, Hosmillo, Myra, Lee, Joo Hyeon, James, Leo C., Thukral, Lipi, Veesler, David, Sigal, Alex, Sampaziotis, Fotios, Goodfellow, Ian G., Matheson, Nicholas J., Sato, Kei, and Gupta, Ravindra K.

Published
2022
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15. Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage

Author

Scheepers, Cathrine, Everatt, Josie, Amoako, Daniel G., Tegally, Houriiyah, Wibmer, Constantinos Kurt, Mnguni, Anele, Ismail, Arshad, Mahlangu, Boitshoko, Lambson, Bronwen E., Martin, Darren P., Wilkinson, Eduan, San, James Emmanuel, Giandhari, Jennifer, Manamela, Nelia, Ntuli, Noxolo, Kgagudi, Prudence, Cele, Sandile, Richardson, Simone I., Pillay, Sureshnee, Mohale, Thabo, Ramphal, Upasana, Naidoo, Yeshnee, Khumalo, Zamantungwa T., Kwatra, Gaurav, Gray, Glenda, Bekker, Linda-Gail, Madhi, Shabir A., Baillie, Vicky, Van Voorhis, Wesley C., Treurnicht, Florette K., Venter, Marietjie, Mlisana, Koleka, Wolter, Nicole, Sigal, Alex, Williamson, Carolyn, Hsiao, Nei-yuan, Msomi, Nokukhanya, Maponga, Tongai, Preiser, Wolfgang, Makatini, Zinhle, Lessells, Richard, Moore, Penny L., de Oliveira, Tulio, von Gottberg, Anne, and Bhiman, Jinal N.

Published
2022
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16. An Oxford Nanopore Technology-Based Hepatitis B Virus Sequencing Protocol Suitable for Genomic Surveillance Within Clinical Diagnostic Settings.

Author

Tshiabuila, Derek, Choga, Wonderful, San, James E., Maponga, Tongai, Van Zyl, Gert, Giandhari, Jennifer, Pillay, Sureshnee, Preiser, Wolfgang, Naidoo, Yeshnee, Baxter, Cheryl, Martin, Darren P., and de Oliveira, Tulio

Abstract

Chronic Hepatitis B Virus (HBV) infection remains a significant public health concern, particularly in Africa, where the burden is substantial. HBV is an enveloped virus, classified into ten phylogenetically distinct genotypes (A–J). Tests to determine HBV genotypes are based on full-genome sequencing or reverse hybridization. In practice, both approaches have limitations. Whereas diagnostic sequencing, generally using the Sanger approach, tends to focus only on the S-gene and yields little or no information on intra-patient HBV genetic diversity, reverse hybridization detects only known genotype-specific mutations. To resolve these limitations, we developed an Oxford Nanopore Technology (ONT)-based HBV diagnostic sequencing protocol suitable for clinical virology that yields both complete genome sequences and extensive intra-patient HBV diversity data. Specifically, the protocol involves tiling-based PCR amplification of HBV sequences, library preparation using the ONT Rapid Barcoding Kit (Oxford nanopore Technologies, Oxford, OX4 4DQ, UK), ONT GridION sequencing, genotyping using genome detective software v1.132/1.133, a recombination analysis using jpHMM (26 October 2011 version) and RDP5.61 software, and drug resistance profiling using Geno2pheno v2.0 software. We prove the utility of our protocol by efficiently generating and characterizing high-quality near full-length HBV genomes from 148 residual diagnostic samples from HBV-infected patients in the Western Cape province of South Africa, providing valuable insights into the genetic diversity and epidemiology of HBV in this region of the world. [ABSTRACT FROM AUTHOR]

Published
2024
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20. Detection of a SARS-CoV-2 variant of concern in South Africa

Author

Tegally, Houriiyah, Wilkinson, Eduan, Giovanetti, Marta, Iranzadeh, Arash, Fonseca, Vagner, Giandhari, Jennifer, Doolabh, Deelan, Pillay, Sureshnee, San, Emmanuel James, Msomi, Nokukhanya, Mlisana, Koleka, von Gottberg, Anne, Walaza, Sibongile, Allam, Mushal, Ismail, Arshad, Mohale, Thabo, Glass, Allison J., Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolfgang, Petruccione, Francesco, Sigal, Alex, Hardie, Diana, Marais, Gert, Hsiao, Nei-yuan, Korsman, Stephen, Davies, Mary-Ann, Tyers, Lynn, Mudau, Innocent, York, Denis, Maslo, Caroline, Goedhals, Dominique, Abrahams, Shareef, Laguda-Akingba, Oluwakemi, Alisoltani-Dehkordi, Arghavan, Godzik, Adam, Wibmer, Constantinos Kurt, Sewell, Bryan Trevor, Lourenço, José, Alcantara, Luiz Carlos Junior, Kosakovsky Pond, Sergei L., Weaver, Steven, Martin, Darren, Lessells, Richard J., Bhiman, Jinal N., Williamson, Carolyn, and de Oliveira, Tulio

Published
2021
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22. Sixteen novel lineages of SARS-CoV-2 in South Africa

Author

Tegally, Houriiyah, Wilkinson, Eduan, Lessells, Richard J., Giandhari, Jennifer, Pillay, Sureshnee, Msomi, Nokukhanya, Mlisana, Koleka, Bhiman, Jinal N., von Gottberg, Anne, Walaza, Sibongile, Fonseca, Vagner, Allam, Mushal, Ismail, Arshad, Glass, Allison J., Engelbrecht, Susan, Van Zyl, Gert, Preiser, Wolfgang, Williamson, Carolyn, Petruccione, Francesco, Sigal, Alex, Gazy, Inbal, Hardie, Diana, Hsiao, Nei-yuan, Martin, Darren, York, Denis, Goedhals, Dominique, San, Emmanuel James, Giovanetti, Marta, Lourenço, José, Alcantara, Luiz Carlos Junior, and de Oliveira, Tulio

Published
2021
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24. Diverse genomoviruses representing twenty-nine species identified associated with plants

Author

Fontenele, Rafaela S., Roumagnac, Philippe, Richet, Cécile, Kraberger, Simona, Stainton, Daisy, Aleamotu‘a, Maketalena, Filloux, Denis, Bernardo, Pauline, Harkins, Gordon W., McCarthy, James, Charles, Lachlan S., Lamas, Natalia S., Abreu, Emanuel F. M., Abreu, Rayane A., Batista, Graciete B., Lacerda, Ana L. M., Salywon, Andrew, Wojciechowski, Martin F., Majure, Lucas C., Martin, Darren P., Ribeiro, Simone G., Lefeuvre, Pierre, and Varsani, Arvind

Published
2020
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28. Gene-Wide Identification of Episodic Selection

Author

Murrell, Ben, Weaver, Steven, Smith, Martin D., Wertheim, Joel O., Murrell, Sasha, Aylward, Anthony, Eren, Kemal, Pollner, Tristan, Martin, Darren P., Smith, Davey M., Scheffler, Konrad, and Kosakovsky Pond, Sergei L.

Subjects
episodic selection, random effects model, evolutionary model, branch-site model
Abstract

We present BUSTED, a new approach to identifying gene-wide evidence of episodic positive selection, where the non-synonymous substitution rate is transiently greater than the synonymous rate. BUSTED can be used either on an entire phylogeny (without requiring an a priori hypothesis regarding which branches are under positive selection) or on a pre-specified subset of foreground lineages (if a suitable a priori hypothesis is available). Selection is modeled as varying stochastically over branches and sites, and we propose a computationally inexpensive evidence metric for identifying sites subject to episodic positive selection on any foreground branches. We compare BUSTED with existing models on simulated and empirical data. An implementation is available on www.datamonkey.org/busted, with a widget allowing the interactive specification of foreground branches.

Published
2015

29. Playing the Game: Recruiting Black Males in Teaching

Author

Green, Satasha L. and Martin, Darren

Abstract

The purpose of this comparative study is to ascertain the experiences and perceptions of four Black males enrolled in teacher preparation programs, one at a Predominantly Black Institution (PBI) and three at a Predominantly White Institution (PWI). Findings provide insight for Colleges of Teacher Education to understand the barriers that prevent Black males from successfully matriculating and entering the teaching profession.

Published
2018
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31. Complete genome reconstruction of the global and European regional dispersal history of the lumpy skin disease virus

Author

Van Borm, Steven, primary, Dellicour, Simon, additional, Martin, Darren P., additional, Lemey, Philippe, additional, Agianniotaki, Eirini I., additional, Chondrokouki, Eleni D., additional, Vidanovic, Dejan, additional, Vaskovic, Nikola, additional, Petroviċ, Tamaš, additional, Laziċ, Sava, additional, Koleci, Xhelil, additional, Vodica, Ani, additional, Djadjovski, Igor, additional, Krstevski, Kiril, additional, Vandenbussche, Frank, additional, Haegeman, Andy, additional, De Clercq, Kris, additional, and Mathijs, Elisabeth, additional

Published
2023
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32. Rapid dynamic changes of FL.2 variant: a case report of COVID-19 breakthrough infection.

Author

Choga, Wonderful T., primary, Kurusa (Gasenna), Gobuiwang Khilly, additional, San, James Emmanuel, additional, Ookame, Tidimalo, additional, Gobe, Irene, additional, Chand, Mohammed, additional, Phafane, Badisa, additional, Seru, Kedumetse, additional, Matshosi, Patience, additional, Zuze, Boitumelo, additional, Ndlovu, Nokuthula, additional, Matsuru, Teko, additional, Maruapula, Dorcas, additional, Bareng, Ontlametse T., additional, Macheke, Kutlo, additional, Kuate-Lere, Lesego, additional, Tlale, Labapotswe, additional, Lesetedi, Onalethata, additional, Tau, Modiri, additional, Mbulawa, Mpaphi B., additional, Smith-Lawrence, Pamela, additional, Matshaba, Mogomotsi, additional, Shapiro, Roger, additional, Makhema, Joseph, additional, Martin, Darren P., additional, de Oliveira, Tulio, additional, Lessells, Richard J., additional, Lockman, Shahin, additional, Gaseitsiwe, Simani, additional, and Moyo, Sikhulile, additional

Published
2023
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34. Pervasive tertiary structure in the dengue virus RNA genome

Author

Dethoff, Elizabeth A., Boerneke, Mark A., Gokhale, Nandan S., Muhire, Brejnev M., Martin, Darren P., Sacco, Matthew T., McFadden, Michael J., Weinstein, Jules B., Messer, William B., Horner, Stacy M., and Weeks, Kevin M.

Published
2018

35. Ready-to-use public infrastructure for global SARS-CoV-2 monitoring

Author

Maier, Wolfgang, Bray, Simon, van den Beek, Marius, Bouvier, Dave, Coraor, Nathan, Miladi, Milad, Singh, Babita, De Argila, Jordi Rambla, Baker, Dannon, Roach, Nathan, Gladman, Simon, Coppens, Frederik, Martin, Darren P., Lonie, Andrew, Grüning, Björn, Kosakovsky Pond, Sergei L., and Nekrutenko, Anton

Published
2021
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42. Molecular diversity, geographic distribution and host range of monocot-infecting mastreviruses in Africa and surrounding islands

Author

Kraberger, Simona, Saumtally, Salem, Pande, Daniel, Khoodoo, Michel H.R., Dhayan, Sonalall, Dookun-Saumtally, Asha, Shepherd, Dionne N., Hartnady, Penelope, Atkinson, Richard, Lakay, Francisco M., Hanson, Britt, Redhi, Devasha, Monjane, Adérito L., Windram, Oliver P., Walters, Matthew, Oluwafemi, Sunday, Michel-Lett, Jean, Lefeuvre, Pierre, Martin, Darren P., and Varsani, Arvind

Published
2017
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50. Evolution of anelloviruses from a circovirus-like ancestor through gradual augmentation of the jelly-roll capsid protein

Author

Butkovic, Anamarija, primary, Kraberger, Simona, additional, Smeele, Zoe, additional, Martin, Darren P, additional, Schmidlin, Kara, additional, Fontenele, Rafaela S, additional, Shero, Michelle R, additional, Beltran, Roxanne S, additional, Kirkham, Amy L, additional, Aleamotu’a, Maketalena, additional, Burns, Jennifer M, additional, Koonin, Eugene V, additional, Varsani, Arvind, additional, and Krupovic, Mart, additional

Published
2023
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