135 results on '"Marta Prado"'
Search Results
2. Sesame Detection in Food Using DNA-Functionalized Gold Nanoparticles: A Sensitive, Rapid, and Cost-Effective Colorimetric Approach
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Pablo Llano-Suárez, Adrián Sánchez-Visedo, Inmaculada Ortiz-Gómez, María Teresa Fernández-Argüelles, Marta Prado, José Manuel Costa-Fernández, and Ana Soldado
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food safety ,AuNPs ,MNAzymes ,analytical signal amplification ,color analysis ,sesame allergen ,Biotechnology ,TP248.13-248.65 - Abstract
Food safety control is a key issue in the food and agriculture industries. For such purposes, developing miniaturized analytical methods is critical for enabling the rapid and sensitive detection of food supplements, allergens, and pollutants. Here, a novel bioanalytical methodology based on DNA-functionalized gold nanoparticles (AuNPs) and colorimetric detection was developed to detect the presence of sesame (a major allergen) through sesame seed DNA as a target, in food samples. The presence of sesame DNA induces controlled nanoparticle aggregation/desegregation, resulting in a color change (from blue to red) proportional to sesame DNA concentration. The incorporation of multicomponent nucleic acid enzymes (MNAzymes) in this strategy has been carried out to perform an isothermal signal amplification strategy to improve the sensitivity of detection. Also, open-source software for color analysis was used to ensure an unbiased visual color-change detection, enhancing detection accuracy and sensitivity and opening the possibility of performing a simple and decentralized analyte detection. The method successfully detected the presence of sesame DNA in sesame seed, sesame oil, olive oil, and sunflower oil. In brief, the developed approach constitutes a simple and affordable alternative to perform a highly sensitive detection of DNA in food without complex methodologies or the requirement of expensive instrumentation.
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- 2024
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3. Moving towards on-site detection of Shiga toxin-producing Escherichia coli in ready-to-eat leafy greens
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Ana Costa-Ribeiro, Alexandre Lamas, Azucena Mora, Marta Prado, and Alejandro Garrido-Maestu
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STEC ,Shiga toxin-producing E. coli ,stx1 ,stx2 ,Point-of-care ,Loop-mediated isothermal amplification ,Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 - Abstract
Rapid identification of Shiga toxin-producing Escherichia coli, or STEC, is of utmost importance to assure the innocuousness of the foodstuffs. STEC have been implicated in outbreaks associated with different types of foods however, among them, ready-to-eat (RTE) vegetables are particularly problematic as they are consumed raw, and are rich in compounds that inhibit DNA-based detection methods such as qPCR. In the present study a novel method based on Loop-mediated isothermal amplification (LAMP) to overcome the limitations associated with current molecular methods for the detection of STEC in RTE vegetables targeting stx1 and stx2 genes. In this sense, LAMP demonstrated to be more robust against inhibitory substances in food. In this study, a comprehensive enrichment protocol was combined with four inexpensive DNA extraction protocols. The one based on silica purification enhanced the performance of the method, therefore it was selected for its implementation in the final method. Additionally, three different detection chemistries were compared, namely real-time fluorescence detection, and two end-point colorimetric strategies, one based on the addition of SYBR Green, and the other based on a commercial colorimetric master mix. After optimization, all three chemistries demonstrated suitable for the detection of STEC in spiked RTE salad samples, as it was possible to reach a LOD50 of 0.9, 1.4, and 7.0 CFU/25 g for the real-time, SYBR and CC LAMP assays respectively. All the performance parameters reached values higher than 90 %, when compared to a reference method based on multiplex qPCR. More specifically, the analytical sensitivity was 100, 90.0 and 100 % for real-time, SYBR and CC LAMP respectively, the specificity 100 % for all three assays, and accuracy 100, 96 and 100 %. Finally, a high degree of concordance was also obtained (1, 0.92 and 1 respectively). Considering the current technological advances, the method reported, using any of the three detection strategies, demonstrated suitable for their implementation in decentralized settings, with low equipment resources.
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- 2024
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4. Evaluation of the Novel mTA10 Selective Broth, MSB, for the Co-Enrichment and Detection of Salmonella spp., Escherichia coli O157 and Listeria monocytogenes in Ready-to-Eat Salad Samples
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Ana Costa-Ribeiro, Alexandre Lamas, Marta Prado, and Alejandro Garrido-Maestu
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selective enrichment ,multiplex qPCR ,Salmonella spp. ,Escherichia coli O157 ,Listeria monocytogenes ,Chemical technology ,TP1-1185 - Abstract
Multiplex assays implementing DNA-based methods have been demonstrated as suitable alternatives to culture-based microbiological methods; however, in most cases, they still require a suitable enrichment step. Finding suitable enrichment conditions for different bacteria may result in challenges. In the present study, a novel selective broth named MSB (mTA10 selective broth) was formulated for the simultaneous recovery of Salmonella spp., E. coli O157:H7 and L. monocytogenes. Attention was paid to ensure the optimal enrichment of L. monocytogenes as its enrichment is more challenging. To this end, cellobiose was added to increase the growth of L. monocytogenes, and sodium pyruvate was also added to improve the recovery of stressed bacteria. Four selective agents were added, namely nalidixic acid, sodium cholate, lithium chloride and potassium tellurite, to control the growth of interfering microorganisms. It was concluded that the novel broth was suitable for the simultaneous enrichment of the target pathogens, allowing them to reach concentrations higher than 7 log CFU/mL for each bacterium in pure culture. Furthermore, all heavily contaminated ready-to-eat salad samples reached concentrations higher than 5 log CFU/g. Finally, after 24 h of enrichment of spiked salad, it was possible to detect concentrations below 10 CFU/25 g.
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- 2023
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5. Faster monitoring of the invasive alien species (IAS) Dreissena polymorpha in river basins through isothermal amplification
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Joana Carvalho, Alejandro Garrido-Maestu, Sarah Azinheiro, Pablo Fuciños, Jorge Barros-Velázquez, Ramón J. De Miguel, Verónica Gros, and Marta Prado
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Medicine ,Science - Abstract
Abstract Zebra mussel (Dreissena polymorpha) is considered as one of the 100 most harmful IAS in the world. Traditional detection methods have limitations, and PCR based environmental DNA detection has provided interesting results for early warning. However, in the last years, the development of isothermal amplification methods has received increasing attention. Among them, loop-mediated isothermal amplification (LAMP) has several advantages, including its higher tolerance to the presence of inhibitors and the possibility of naked-eye detection, which enables and simplifies its potential use in decentralized settings. In the current study, a real-time LAMP (qLAMP) method for the detection of Dreissena polymorpha was developed and tested with samples from the Guadalquivir River basin, together with two real-time PCR (qPCR) methods using different detection chemistries, targeting a specific region of the mitochondrial gene cytochrome C oxidase subunit I. All three developed approaches were evaluated regarding specificity, sensitivity and time required for detection. Regarding sensitivity, both qPCR approaches were more sensitive than qLAMP by one order of magnitude, however the qLAMP method proved to be as specific and much faster being performed in just 9 min versus 23 and 29 min for the qPCR methods based on hydrolysis probe and intercalating dye respectively.
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- 2021
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6. Application of MinION sequencing as a tool for the rapid detection and characterization of Listeria monocytogenes in smoked salmon
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Sarah Azinheiro, Foteini Roumani, Ana Costa-Ribeiro, Marta Prado, and Alejandro Garrido-Maestu
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long-read sequencing ,MinION ,Listeria monocytogenes ,serotyping ,ready-to-eat ,smoked salmon ,Microbiology ,QR1-502 - Abstract
Microbial pathogens may be present in different types of foods, and hence the development of novel methods to assure consumers' safeness is of great interest. Molecular methods are known to provide sensitive and rapid results; however, they are typically targeted approaches. In recent years, the advent of non-targeted approaches based on next-generation sequencing (NGS) has emerged as a rational way to proceed. This technology allows for the detection of several pathogens simultaneously. Furthermore, with the same set of data, it is possible to characterize the microorganisms in terms of serotype, virulence, and/ or resistance genes, among other molecular features. In the current study, a novel method for the detection of Listeria monocytogenes based on the “quasimetagenomics” approach was developed. Different enrichment media and immunomagnetic separation (IMS) strategies were compared to determine the best approach in terms of L. monocytogenes sequences generated from smoked salmon samples. Finally, the data generated were analyzed with a user-friendly workflow that simultaneously provided the species identification, serotype, and antimicrobial resistance genes. The new method was thoroughly evaluated against a culture-based approach, using smoked salmon inoculated with L. monocytogenes as the matrix of choice. The sequencing method reached a very low limit of detection (LOD50, 1.2 CFU/ 25 g) along with high diagnostic sensitivity and specificity (100%), and a perfect correlation with the culture-based method (Cohen's k = 1.00). Overall, the proposed method overcomes all the major limitations reported for the implementation of NGS as a routine food testing technology and paves the way for future developments taking its advantage into consideration.
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- 2022
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7. Evaluation of simple sequence repeats (SSR) and single nucleotide polymorphism (SNP)-based methods in olive varieties from the Northwest of Spain and potential for miniaturization
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Joana Carvalho, Shambhavi Yadav, Alejandro Garrido-Maestu, Sarah Azinheiro, Isabel Trujillo, Jorge Barros-Velázquez, and Marta Prado
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Cultivated olive ,Simple sequence repeats ,Single nucleotide polymorphisms ,HRM ,Allele-specific qPCR ,Miniaturization ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Miniaturization of DNA-based techniques can bring interesting advantages for food analysis, such as portability of complex analytical procedures. In the olive oil industry, miniaturization can be particularly interesting for authenticity and traceability applications, through in situ control of raw materials before production and/or the final products. However, variety identification is challenging, and implementation on miniaturized settings must be carefully evaluated, starting from the selected analytical approach. In this work, SSR- and SNP-based genotyping strategies were investigated for the identification and differentiation of two olive varieties from the Northwest of Spain. For the selected SNPs two genotyping methods were tested: real-time allele-specific PCR and high resolution melting analysis. These methods were compared and evaluated regarding their potential for integration in a microfluidic device. Both SNP-based methods proved to be successful for identification of the selected varieties, however real-time allele-specific PCR was the one that achieved the best results when analyzing mixtures, allowing the identification of both monovarietal samples and mixtures of the varieties tested with up to 25%.
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- 2021
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8. Application of Short Pre-enrichment, and Double Chemistry Real-Time PCR, Combining Fluorescent Probes and an Intercalating Dye, for Same-Day Detection and Confirmation of Salmonella spp. and Escherichia coli O157 in Ground Beef and Chicken Samples
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Alejandro Garrido-Maestu, Sarah Azinheiro, Foteini Roumani, Joana Carvalho, and Marta Prado
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melt curve analysis ,Salmonella spp. ,Escherichia coli O157 ,intercalating dye ,same-day detection ,hydrolysis probe ,Microbiology ,QR1-502 - Abstract
Molecular methods, particularly those based on real-time PCR (qPCR), have become a popular approach to detect pathogens in food samples. This technique may take advantage of hydrolysis fluorescent probes for increased specificity. Even though suitable, this approach loses the capacity of performing result confirmation by melt curve analysis. In the current study, we developed an alternative approach, combining fluorescent probes along with an intercalating dye (SYBR Green) in order to simultaneously detect, and confirm the result, of two foodborne pathogens (Salmonella spp. and Escherichia coli O157). This new approach named double chemistry qPCR was combined with a short pre-enrichment in order to obtain a multiplex “same-day” detection method for the selected pathogens. The evaluation of the novel method in spiked food samples (ground beef and chicken breast) obtained values of relative sensitivity, specificity, and accuracy higher than 95%, and Cohen’s kappa of 0.92, with a Limit of Detection95 below 5 cfu/25 g, demonstrating its reliability. In addition to this, the method was challenged by inoculating heat-stressed bacteria as well as dead ones. It was observed that it was also possible to detect stressed bacteria with an initial inoculation level below 10 cfu/25 g. Also, it was noticed that high initial concentration of either pathogen (higher than 104 cfu/25 g) was needed in order to generate false positive results due to the presence of dead bacteria, thus the method presents potential for its application in the specific detection of live microorganisms.
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- 2020
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9. Data on minute DNA quantification on microvolumetric solutions: comparison of mathematical models and effect of some compounds on the DNA quantification accuracy
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Joana Carvalho, Renato Negrinho, Sarah Azinheiro, Alejandro Garrido-Maestu, Jorge Barros-Velázquez, and Marta Prado
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Science (General) ,Q1-390 - Abstract
This article contains data related to the research article entitled “Novel approach for accurate minute DNA quantification on microvolumetric solutions” (Carvalho et al., 2018). The combination of PicoGreen® with a microvolume fluorospectrometer is a popular DNA quantification method due to its high sensitivity and minimal consumption of sample, being commonly used to evaluate the performance of microfluidic devices designed for DNA purification. In this study, the authors present data related with the effect of DNA fragmentation level. The present data article includes the data used on the precision evaluation, in terms of repeatability, of the mathematical models developed to obtain the standards curve for salmon sperm DNA (low molecular weight). In addition, results related with the effect of some compounds on the DNA quantification accuracy using λDNA are presented.
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- 2018
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10. Microsatellite Markers in Olives (Olea europaea L.): Utility in the Cataloging of Germplasm, Food Authenticity and Traceability Studies
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Shambhavi Yadav, Joana Carvalho, Isabel Trujillo, and Marta Prado
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authentication ,cultivar identification ,Olea europaea ,olive oil ,simple sequence repeats ,traceability ,Chemical technology ,TP1-1185 - Abstract
The olive fruit, a symbol of Mediterranean diets, is a rich source of antioxidants and oleic acid (55–83%). Olive genetic resources, including cultivated olives (cultivars), wild olives as well as related subspecies, are distributed widely across the Mediterranean region and other countries. Certain cultivars have a high commercial demand and economical value due to the differentiating organoleptic characteristics. This might result in economically motivated fraudulent practices and adulteration. Hence, tools to ensure the authenticity of constituent olive cultivars are crucial, and this can be achieved accurately through DNA-based methods. The present review outlines the applications of microsatellite markers, one of the most extensively used types of molecular markers in olive species, particularly referring to the use of these DNA-based markers in cataloging the vast olive germplasm, leading to identification and authentication of the cultivars. Emphasis has been given on the need to adopt a uniform platform where global molecular information pertaining to the details of available markers, cultivar-specific genotyping profiles (their synonyms or homonyms) and the comparative profiles of oil and reference leaf samples is accessible to researchers. The challenges of working with microsatellite markers and efforts underway, mainly advancements in genotyping methods which can be effectively incorporated in olive oil varietal testing, are also provided. Such efforts will pave the way for the development of more robust microsatellite marker-based olive agri-food authentication platforms.
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- 2021
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11. Correction: Azinheiro et al. Multiplex Detection of Salmonella spp., E. coli O157 and L. monocytogenes by qPCR Melt Curve Analysis in Spiked Infant Formula. Microorganisms 2020, 8, 1359
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Sarah Azinheiro, Joana Carvalho, Marta Prado, and Alejandro Garrido-Maestu
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n/a ,Biology (General) ,QH301-705.5 - Abstract
The authors would like to make the following correction to the published paper [...]
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- 2021
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12. Optimization and Clinical Evaluation of a Multi-Target Loop-Mediated Isothermal Amplification Assay for the Detection of SARS-CoV-2 in Nasopharyngeal Samples
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Foteini Roumani, Sarah Azinheiro, Hugo Sousa, Ana Sousa, Mafalda Timóteo, Tatiana Varandas, Daniela Fonseca-Silva, Inês Baldaque, Joana Carvalho, Marta Prado, and Alejandro Garrido-Maestu
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SARS-CoV-2 ,RT-LAMP ,clinical evaluation ,ORF8 ,ORF3a ,Microbiology ,QR1-502 - Abstract
SARS-CoV-2 is the coronavirus responsible for COVID-19, which has spread worldwide, affecting more than 200 countries, infecting over 140 million people in one year. The gold standard to identify infected people is RT-qPCR, which is highly sensitive, but needs specialized equipment and trained personnel. The demand for these reagents has caused shortages in certain countries. Isothermal nucleic acid techniques, such as loop-mediated isothermal amplification (LAMP) have emerged as an alternative or as a complement to RT-qPCR. In this study, we developed and evaluated a multi-target RT-LAMP for the detection of SARS-CoV-2. The method was evaluated against an RT-qPCR in 152 clinical nasopharyngeal swab samples. The results obtained indicated that both assays presented a “good concordance” (Cohen’s k of 0.69), the RT-LAMP was highly specific (99%) but had lower sensitivity compared to the gold standard (63.3%). The calculated low sensitivity was associated with samples with very low viral load (RT-qPCR Cq values higher than 35) which may be associated with non-infectious individuals. If an internal Cq threshold below 35 was set, the sensitivity and Cohen’s k increased to 90.9% and 0.92, respectively. The interpretation of the Cohen’s k for this was “very good concordance”. The RT-LAMP is an attractive approach for frequent individual testing in decentralized setups.
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- 2021
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13. Influence of the Electrolyte Salt Concentration on DNA Detection with Graphene Transistors
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Agnes Purwidyantri, Telma Domingues, Jérôme Borme, Joana Rafaela Guerreiro, Andrey Ipatov, Catarina M. Abreu, Marco Martins, Pedro Alpuim, and Marta Prado
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liquid gate ,graphene ,Debye length ,phosphate buffer (PB) ,phosphate buffer saline (PBS) ,salts ,Biotechnology ,TP248.13-248.65 - Abstract
Liquid-gated Graphene Field-Effect Transistors (GFET) are ultrasensitive bio-detection platforms carrying out the graphene’s exceptional intrinsic functionalities. Buffer and dilution factor are prevalent strategies towards the optimum performance of the GFETs. However, beyond the Debye length (λD), the role of the graphene-electrolytes’ ionic species interactions on the DNA behavior at the nanoscale interface is complicated. We studied the characteristics of the GFETs under different ionic strength, pH, and electrolyte type, e.g., phosphate buffer (PB), and phosphate buffer saline (PBS), in an automatic portable built-in system. The electrostatic gating and charge transfer phenomena were inferred from the field-effect measurements of the Dirac point position in single-layer graphene (SLG) transistors transfer curves. Results denote that λD is not the main factor governing the effective nanoscale screening environment. We observed that the longer λD was not the determining characteristic for sensitivity increment and limit of detection (LoD) as demonstrated by different types and ionic strengths of measuring buffers. In the DNA hybridization study, our findings show the role of the additional salts present in PBS, as compared to PB, in increasing graphene electron mobility, electrostatic shielding, intermolecular forces and DNA adsorption kinetics leading to an improved sensitivity.
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- 2021
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14. Multiplex Detection of Salmonella spp., E. coli O157 and L. monocytogenes by qPCR Melt Curve Analysis in Spiked Infant Formula
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Sarah Azinheiro, Joana Carvalho, Marta Prado, and Alejandro Garrido-Maestu
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multiplex qPCR ,melting analysis ,food analysis ,Listeria monocytogenes ,Salmonella spp. ,E coli O157 ,Biology (General) ,QH301-705.5 - Abstract
Food poisoning continue to be a threat in the food industry showing a need to improve the detection of the pathogen responsible for the hospitalization cases and death. DNA-based techniques represent a real advantage and allow the detection of several targets at the same time, reducing cost and time of analysis. The development of new methodology using SYBR Green qPCR for the detection of L. monocytogenes, Salmonella spp. and E. coli O157 simultaneously was developed and a non-competitive internal amplification control (NC-IAC) was implemented to detect reaction inhibition. The formulation and supplementation of the enrichment medium was also optimized to allow the growth of all pathogens. The limit of detection (LoD) 95% obtained was E. coli O157, and 2 CFU/25 g for Salmonella spp. and L. monocytogenes and regarding the multiplex detection a LoD 95% of 1.7 CFU/25 g was observed. The specificity, relative sensitivity and accuracy of full methodology were 100% and the use of the NC-IAC allowed the reliability of the results without interfering with the sensitivity of the methodology. The described study proved to obtain results comparable to those of probe-based qPCR, and more economically than classical high resolution melting qPCR, being both important aspects for its implementation in the food industry.
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- 2020
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15. Application of Recombinase Polymerase Amplification with Lateral Flow for a Naked-Eye Detection of Listeria monocytogenes on Food Processing Surfaces
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Sarah Azinheiro, Joana Carvalho, Marta Prado, and Alejandro Garrido-Maestu
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RPA ,lateral flow ,L. monocytogenes ,surface analysis ,food processing ,Chemical technology ,TP1-1185 - Abstract
The continuous contamination of foods with L. monocytogenes, highlights the need for additional controls in the food industry. The verification of food processing plants is key to avoid cross-contaminations, and to assure the safety of the food products. In this study, a new methodology for the detection of L. monocytogenes on food contact surfaces was developed and evaluated. It combines Recombinase Polymerase Amplification (RPA) with the lateral flow (LF) naked-eye detection. Different approaches for the recovery of the bacteria from the surface, the enrichment step and downstream analysis by RPA-LF were tested and optimized. The results were compared with a standard culture-based technique and qPCR analysis. Sampling procedure with sponges was more efficient for the recovery of the bacteria than a regular swab. A 24 h enrichment in ONE broth was needed for the most sensitive detection of the pathogen. By RPA-LF, it was possible to detect 1.1 pg/µL of pure L. monocytogenes DNA, and the complete methodology reached a LoD50 of 4.2 CFU/cm2 and LoD95 of 18.2 CFU/cm2. These results are comparable with the culture-based methodology and qPCR. The developed approach allows for a next-day detection without complex equipment and a naked-eye visualization of the results.
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- 2020
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16. Combination of Microfluidic Loop-Mediated Isothermal Amplification with Gold Nanoparticles for Rapid Detection of Salmonella spp. in Food Samples
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Alejandro Garrido-Maestu, Sarah Azinheiro, Joana Carvalho, Sara Abalde-Cela, Enrique Carbó-Argibay, Lorena Diéguez, Marek Piotrowski, Yury V. Kolen’ko, and Marta Prado
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microfluidics ,gold nanoparticles ,Salmonella spp. ,LAMP ,invA ,Microbiology ,QR1-502 - Abstract
Foodborne diseases are an important cause of morbidity and mortality. According to the World Health Organization, there are 31 main global hazards, which caused in 2010 600 million foodborne illnesses and 420000 deaths. Among them, Salmonella spp. is one of the most important human pathogens, accounting for more than 90000 cases in Europe and even more in the United States per year. In the current study we report the development, and thorough evaluation in food samples, of a microfluidic system combining loop-mediated isothermal amplification with gold nanoparticles (AuNPs). This system is intended for low-cost, in situ, detection of different pathogens, as the proposed methodology can be extrapolated to different microorganisms. A very low limit of detection (10 cfu/25 g) was obtained. Furthermore, the evaluation of spiked food samples (chicken, turkey, egg products), completely matched the expected results, as denoted by the index kappa of concordance (value of 1.00). The results obtained for the relative sensitivity, specificity and accuracy were of 100% as well as the positive and negative predictive values.
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- 2017
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17. Acero de alto silicio producido por inmersión en Al-Si y recocido de difusión
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Tanya Ros-Yáñez, Yvan Houbaert, Oldrich Schneeweiss, Juan Asensio-Lozano, and Marta Prado-García
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aceros eléctricos ,inmersión en caliente ,aceros de alto silicio ,Mining engineering. Metallurgy ,TN1-997 - Abstract
Es difícil procesar aceros eléctricos de alto contenido en silicio (>3,5 % Si). Esto se debe principalmente, a problemas de fragilidad, aparición de grietas durante la laminación y oxidación. Sin embargo, existe un importante mercado para este tipo de acero en aplicaciones eléctricas debido a la favorable influencia que ejerce el Si sobre la magnetoestricción, las pérdidas eléctricas y la resistividad eléctrica. Como proceso alternativo, se sumergieron substratos de acero con 3 % de silicio en una aleación hipereutéctica Al-25 % Si, en un simulador de recubrimiento por inmersión en caliente. En los ensayos se utilizaron diferentes tiempos de precalentamiento y de inmersión. En la segunda fase de la investigación se llevaron a cabo recocidos de difusión en el mismo simulador para difundir una cantidad suficiente de Si en el acero. Las capas obtenidas y el substrato se caracterizaron mediante microscopía electrónica de barrido y análisis EDS observándose que: • en todas las capas aparecen fases intermetálicas de acuerdo al diagrama ternario Fe-Si-Al. • se forma la estructura ordenada DO3 (Fe3Si), si el tiempo de inmersión y/o de difusión es suficiente, evidenciándose la difusión del silicio. • por doble inmersión se obtienen grandes áreas de Si puro en la capa depositada. • todavía no se lograron en los experimentos realizados concentraciones homogéneas de silicio en todo el espesor del substrato. • cálculos teóricos demuestran que gradientes de Si en el acero también mejoran las propiedades magnéticas considerablemente.
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- 2000
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18. ESOFAGITE EOSINOFÍLICA: UMA REVISÃO DE LITERATURA
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OLIVEIRA SANTOS, DANIEL, primary, CAROLINE SANTOS ANDRADE, ANA, additional, GABRIEL SANTANA TRINDADE, JOÃO, additional, SANTOS LIMA, VITÓRIA, additional, TEIXEIRA ANDRADE, ÉRIKA, additional, JANÓLIO CARDOSO SILVA, ENZO, additional, LUIZA VIEIRA SANTOS, ANA, additional, LUCAS SILVA CIRINO, DEIVISSON, additional, GONÇALVES DA ROCHA, ISADORA, additional, PEREIRA MOURA, THATIANE, additional, MARTA PRADO LIMA, MARIA, additional, CAROLINE SIQUEIRA ALVES, ANNE, additional, RAMOS DE FARIA SANTANA, VANESSA, additional, LIMA CANUTO, LARA, additional, and DELLE VEDOVE LEVITA, LAURA, additional
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- 2023
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19. Cetoacidose Diabética: do Diagnóstico ao Tratamento
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OLIVEIRA SANTOS, DANIEL, primary, BARROS FERRAZ, TÚLIO, additional, SOARES DE FIGUEIREDOMACÁRIO, EDENIA, additional, ELIZABETH OLIVEIRA DOS SANTOS, ANA, additional, MARTA PRADO LIMA, MARIA, additional, EDUARDA RIBEIRO DE OLIVEIRA, MARIA, additional, MARIA PASSOS FERREIRA, BÁRBARA, additional, SANTOS MELO, BIANCA, additional, LUISE SANTANA, KAREN, additional, BITTENCOURT OLIVEIRA NASCIMENTO, BEATRIZ, additional, TOJAL GUIMARÃES, GABRIELA, additional, CLARA MENDONÇA BARRETO, MARIA, additional, FONSECA CARVALHO SILVEIRA, VANESSA, additional, BEZERRA DE LIMA, VICTORIA, additional, and CANDIL MARIM TOLEDO, KAIQUE, additional
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- 2023
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20. SARCOMA PRIMÁRIO DO CORAÇÃO COM PROVÁVEL METÁSTASE CEREBRAL: RELATO DE CASO
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Barros, Mayra Pereira Souza, primary, Lima, Bruno José Santos, additional, Santos, Yanne Tavares, additional, Prado, Luiz Flávio Andrade, additional, Aragão, Cleverton Canuto, additional, Felix, Wilson Oliveira, additional, Robles, Marco Antonio Silva, additional, Mota, Filipe Matias Batista, additional, Moraes, Matheus Vieira de, additional, Lima, Maria Marta Prado, additional, Reis, Victória Maria Fontes dos, additional, and Macario, Edenia Soares de Figueiredo, additional
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- 2022
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21. CRISE HIPERTENSIVA: UM QUADRO COMUM NA EMERGÊNCIA
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DUARTE, ANA BEATRIZ ARAUJO, primary, OLIVEIRA, ALEXANDRE SALOMÃO DE BRAZ, additional, MACARIO, EDENIA SOARES DE FIGUEIREDO, additional, LIMA, MARIA MARTA PRADO, additional, SILVA, KARINA SANTOS, additional, SANTOS, ADRIELLE CALDAS BATISTA DOS, additional, RESENDE, MAÍSA CRISTINA FERREIRA, additional, AGUIAR, CLARA APARECIDA FIGUEIREDO, additional, SILVA, LHAIS SANTOS DA, additional, PIMENTEL, ANNIE CAROLINE JORGE, additional, GOMES, ANA CLARA OLIVEIRA BRITO, additional, ROSA, DANIEL MACIEL, additional, MENDONÇA, CAROLINA MONTEIRO DE, additional, MACHADO, JOÃO PAULO DE ALMEIDA, additional, and OLIVEIRA, MARIA EDUARDA MARTINS DE, additional
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- 2022
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22. Perfil epidemiológico da insuficiência renal no Brasil de 2012 a 2022
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Duarte, Ana Beatriz Araújo, primary, Santos, Sayron Natanael Lopes Pereira, additional, Araújo, Malanny Santos, additional, Macário, Edenia Soares de Figueirêdo, additional, Farias, Marco Antonio Galvão Martins de, additional, Lima, Maria Marta Prado, additional, and Oliveira, Daniele Martins de Lima, additional
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- 2023
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23. Integrated Approach from Sample-to-Answer for Grapevine Varietal Identification on a Portable Graphene Sensor Chip
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Agnes Purwidyantri, Sarah Azinheiro, Aitor García Roldán, Tereza Jaegerova, Adriana Vilaça, Rofer Machado, M. Fátima Cerqueira, Jérôme Borme, Telma Domingues, Marco Martins, Pedro Alpuim, and Marta Prado
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Fluid Flow and Transfer Processes ,Process Chemistry and Technology ,Bioengineering ,Instrumentation - Published
- 2023
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24. Phage amplification coupled with loop-mediated isothermal amplification (PA-LAMP) for same-day detection of viable Salmonella Enteritidis in raw poultry meat
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Lamas, A., Santos, Sílvio Roberto Branco, Marta Prado, Garrido-Maestu, A., and Universidade do Minho
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Detection ,Poultry meat ,LAMP ,Phage amplification ,Enteritidis ,Visual detection ,Chicken - Abstract
Salmonella Enteritidis is the main serotype responsible for human salmonellosis in the European Union. One of the main sources of Salmonella spp. in the food chain are poultry products, such as eggs or chicken meat. In recent years, molecular methods have become an alternative to culture dependent methods for the rapid screening of Salmonella spp. In this work, the strain S. Enteritidis S1400, and previously isolated and characterized bacteriophage PVP-SE2, were used to develop and evaluate a same-day detection method combining Phage Amplification and Loop-mediated isothermal amplification (PA-LAMP) to specifically detect viable S. Enteritidis in chicken breast. This method is based on the detection of the phage DNA rather than bacterial DNA. The virus is added to the sample during pre-enrichment in buffered peptone water, where it replicates in the presence of viable S. Enteritidis. The detection of phage DNA allows, on the one hand to detect viable bacteria, since viruses only replicate in them, and on the other hand to increase the sensitivity of the method since for each infected S. Enteritidis cell, hundreds of new viruses are produced. Two different PA-LAMP detection strategies were evaluated, a real time fluorescence and a naked-eye detection. The present method could down to 0.2 fg/L of pure phage DNA and a concentration of viral particles of 2.2 log PFU/mL. After a short Salmonella recovery step of 3 h and a co-culture of 4 h of the samples with phage particles, both real-time fluorescence and naked-eye method showed a LoD95 of 6.6 CFU/25 g and a LoD50 of 1.5/25 g in spiked chicken breast samples. The entire detection process, including DNA extraction and LAMP analysis, can be completed in around 8 h. In the current proof-of-concept, the novel PA-LAMP obtained comparable results to those of the reference method ISO 6579, to detect Salmonella Enteritidis in poultry meat., Dr. Alexandre Lamas was funded by a postdoctoral fellowship from Xunta de Galicia (Axudas de apoio a étapa de formación posdoutoral IN606B (Modalidade A)). Dr. Alejandro Garrido-Maestu acknowledges funding from the Fundação para a Ciência e Tecnologia through the Scientific Employment Stimulus Program (2021.02810.CEECIND)., info:eu-repo/semantics/publishedVersion
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- 2023
25. CORRECTION OF PSYCHOACTIVE POISONING IN THE MANAGEMENT OF CARDIORESPIRATORY ARREST
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Caroline Nascimento Menezes, Giovanna Brasil Pinheiro, Beatriz Villar Meneses Santos, João Matheus Góes Zedafo Ramos, Henrique Tetsuya Libânio Kitaoka, Luana Rocha de Souza, Victoria Maria Fontes dos Reis, Edenia Soares de Figueiredo Macario, Maria Marta Prado Lima, Marco Antonio Silva Robles, Mariana Sattler Lima Medina, and Filipe Matias Batista Mota
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- 2022
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26. Rapid Same-Day Detection of Listeria monocytogenes, Salmonella spp., and Escherichia coli O157 by Colorimetric LAMP in Dairy Products
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Sarah Azinheiro, Foteini Roumani, Marta Prado, and Alejandro Garrido-Maestu
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Safety, Risk, Reliability and Quality ,Safety Research ,Applied Microbiology and Biotechnology ,Food Science ,Analytical Chemistry - Published
- 2022
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27. Evaluation of Covalent Organic Frameworks for the low-cost, rapid detection of Shiga Toxin-producing Escherichia coli in ready-to-eat salads
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Ana Costa-Ribeiro, Sarah Azinheiro, Soraia P.S. Fernandes, Alexandre Lamas, Marta Prado, Laura M. Salonen, and Alejandro Garrido-Maestu
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Covalent Organic Frameworks ,Multiplex qPCR ,Environmental Chemistry ,Same-day detection ,Shiga Toxin-producing Escherichia coli ,Rapid methods ,Biochemistry ,Spectroscopy ,Ready-to-eat salad ,Analytical Chemistry - Abstract
Background: Ready-to-eat products, such as leafy greens, must be carefully controlled as they are directly consumed without any treatment to reduce the presence of potential pathogens. Food industries, especially those that process products with short shelf-life, demand rapid detection of foodborne pathogens such as Shiga Toxinproducing Escherichia coli (STEC). In this sense, molecular methods can fulfill both requirements of turnaround time and consumer safety. The most popular rapid methods are those based on real-time PCR (qPCR) however, vegetables contain inhibitory compounds that may inhibit the amplification reaction thus, there is a need for novel sample preparation protocols. Results: In the current study, a low-cost sample treatment based on sequential filtration steps was developed. This protocol was combined with covalent organic frameworks (COFs), and compared against a chelating resin, to evaluate their performance by multiplex qPCR targeting the major virulence genes of STEC, namely stx1, stx2, and eae, along with the rfbE for the specific identification of serogroup O157 due to its particularly high incidence, and an Internal Amplification Control to assess reaction inhibition. The optimized sample treatment effectively removed vegetable qPCR inhibitory compounds, and it was possible to detect STEC in spiked ready-toeat salad samples in one working day, roughly 5 h, with an LOD50 of 8.7 CFU/25 g with high diagnostic sensitivity and specificity. The method was also assessed in samples with cold-stressed bacteria with good results, further demonstrating its applicability. Significance: It was demonstrated for the first time that COFs are suitable for DNA extraction and purification. In addition to this, due to the tunable nature of these materials, it is envisioned that future modifications in terms of pore size or combination with magnetic materials, will allow to further improve their performance. In addition to this, the rapid and low-cost sample treatment protocol developed demonstrated suitable for the rapid screening of STEC vegetable samples. published
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- 2023
28. Correction: Development of a Panfungal Recombinase Polymerase Amplification (RPA) Method Coupled with Lateral Flow Strips for the Detection of Spoilage Fungi
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Foteini Roumani, Cristina Rodrigues, Jorge Barros-Velázquez, Alejandro Garrido-Maestu, and Marta Prado
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Safety, Risk, Reliability and Quality ,Safety Research ,Applied Microbiology and Biotechnology ,Food Science ,Analytical Chemistry - Published
- 2023
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29. Naked‐eye detection strategies coupled with isothermal nucleic acid amplification techniques for the detection of human pathogens
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Alejandro Garrido-Maestu and Marta Prado Rodríguez
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Point-of-Care Testing ,Humans ,Nucleic Acid Amplification Techniques ,Polymerase Chain Reaction ,Food Science - Abstract
Nucleic acid amplification-based techniques have gained acceptance by the scientific, and general, community as reference methodologies for many different applications. Since the development of the gold standard of these techniques, polymerase chain reaction (PCR), back in the 1980s many improvements have been made, and alternative techniques emerged reporting improvements over PCR. Among these, isothermal amplification approaches resulted of particular interest as could overcome the need of specialized equipment to accurately control temperature changes, but it was after year 2000 that these techniques have flourished in a huge number of novel alternatives with many different degrees of complexities and requirements. An added value is their possibility to be combined with many different naked-eye detection strategies, simplifying the resources needed, allowing to reduce cost, and serving as the basis for novel developments of lab-on-chip systems, and miniaturized devices, for point-of-care testing. In this review, we will go over different types of naked-eye detection strategies, combined with isothermal amplification. This will provide the readers up-to-date information for them to select the most appropriate strategies depending on the particular needs and resources for their experimental setup.
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- 2022
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30. Dual-Mode Gold Nanoparticle-Based Method for Early Detection of
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Cristina, Pastrana, J Rafaela L, Guerreiro, Monisha, Elumalai, Carlos, Carpena-Torres, Almudena, Crooke, Gonzalo, Carracedo, Marta, Prado, and Fernando, Huete-Toral
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Early Diagnosis ,Acanthamoeba Keratitis ,Humans ,Metal Nanoparticles ,Acanthamoeba ,Gold - Published
- 2022
31. A base da Medicina: anatomia como parte fundamental para a formação acadêmica e segurança profissional
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Laura Elisa Volz, Elina Marta Prado Silva, Kamila Rose Alves Sudré Lima, Jéssica Gabriela Mariano Campos Martins, Letícia Maria Santos Brito, and Marcos Vinícios Ferreira dos Santos
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Cadaver ,General Earth and Planetary Sciences ,Enseñanza ,Anatomia ,Anatomy ,Anatomía ,Teaching ,Cadáver ,Ensino ,General Environmental Science - Abstract
Introdução: Anatomia é a ciência que estuda a estrutura do corpo humano e a integração dos sistemas orgânicos, sendo então necessário um conhecimento anatômico detalhado para atuar de forma clínica e cirúrgica. Entretanto, na medicina atual, há uma redução da carga horária dedicada à anatomia, bem como a mudança de metodologia de ensino, o que ocasionou em um déficit no ensino e aprendizado da anatomia nas instituições de ensino. Objetivo: Avaliar o ensino e aprendizagem da anatomia no curso de medicina. Metodologia: Revisão bibliográfica descritiva em caráter exploratório de abordagem qualitativa, a partir de publicações científicas encontradas nas bases de dados da PUBMED, SCIELO e Biblioteca Virtual em Saúde. Resultados: O estudo contou com a amostra de 8 artigos, dos quais a necessidade de estudo a partir de cadáver foi citada em todos os artigos, a capacitação de profissionais foi explanada em 5 trabalhos, sobre metodologias de estudos nas instituições superiores foram citados em 5 revisões científicas. Discussão: É observado que a anatomia nas instituições de medicina tem tido mudanças ao longo do tempo, com a diminuição da carga horária, informatização do conteúdo e introdução tecnológica. Porém, é evidente que para estudar e compreender outras disciplinas do currículo acadêmico, é necessário um profundo conhecimento anatômico. Conclusão: É necessário que haja integração das matérias para que tenha um melhor raciocínio clínico, o que não é uma realidade nas maiorias das faculdades, uma vez que são abordadas separadamente entre os semestres. Além da falta de cadáver e profissionais capacitados em algumas instituições. Introduction: Anatomy is the science that studies the structure of the human body and the integration of organic systems, requiring detailed anatomical knowledge to act in a clinical and surgical manner. However, in current medicine, there is a reduction in the workload dedicated to anatomy, as well as a change in teaching methodology, which caused a deficit in the teaching and learning of anatomy in educational institutions. Objective: To evaluate the teaching and learning of anatomy in the medical course. Methodology: Descriptive bibliographic review in an exploratory qualitative approach, based on scientific publications found in the PUBMED, SCIELO and Virtual Health Library databases. Results: The study had a sample of 8 articles, of which the need for study from cadavers was mentioned in all articles, the training of professionals was explained in 5 works, on methodologies of studies in higher institutions were mentioned in 5 scientific reviews. Discussion: It is observed that the anatomy in medical institutions has changed over time, with the reduction of workload, computerization of content and technological introduction. However, it is evident that in order to study and understand other disciplines in the academic curriculum, a deep anatomical knowledge is necessary. Conclusion: It is necessary to integrate the subjects so that there is a better clinical reasoning, which is not a reality in most faculties, since they are addressed separately between the semesters. In addition to the lack of corpses and trained professionals in some institutions. Introducción: La anatomía es la ciencia que estudia la estructura del cuerpo humano y la integración de los sistemas orgánicos, requiriendo conocimientos anatómicos detallados para actuar de manera clínica y quirúrgica. Sin embargo, en la medicina actual existe una reducción de la carga horaria dedicada a la anatomía, así como un cambio en la metodología de enseñanza, lo que provocó un déficit en la enseñanza y aprendizaje de la anatomía en las instituciones educativas. Objetivo: Evaluar la enseñanza y el aprendizaje de la anatomía en la carrera de medicina. Metodología: Revisión bibliográfica descriptiva con enfoque cualitativo exploratorio, a partir de publicaciones científicas encontradas en las bases de datos PUBMED, SCIELO y Biblioteca Virtual en Salud. Resultados: El estudio tuvo una muestra de 8 artículos, de los cuales se mencionó en todos los artículos la necesidad de estudio a partir de cadáveres, en 5 trabajos se explicó la formación de profesionales, en 5 revisiones científicas se mencionó sobre metodologías de estudios en instituciones superiores. Discusión: Se observa que la anatomía en las instituciones médicas ha cambiado con el tiempo, con la reducción de la carga de trabajo, informatización de contenidos e introducción tecnológica. Sin embargo, es evidente que para estudiar y comprender otras disciplinas del currículo académico es necesario un profundo conocimiento anatómico. Conclusión: Es necesario integrar las asignaturas para que exista un mejor razonamiento clínico, lo cual no es una realidad en la mayoría de las facultades, ya que se abordan por separado entre los semestres. Además de la falta de cadáveres y profesionales capacitados en algunas instituciones.
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- 2022
32. Programmable graphene-based microfluidic sensor for DNA detection
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Agnes Purwidyantri, Andrey Ipatov, Telma Domingues, Jérôme Borme, Marco Martins, Pedro Alpuim, Marta Prado, and Universidade do Minho
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Programmable microfluidic ,Science & Technology ,Lab-on-a-chip (LoC) ,Engenharia e Tecnologia::Nanotecnologia ,Materials Chemistry ,Metals and Alloys ,DNA sensor ,Electrical and Electronic Engineering ,Condensed Matter Physics ,Instrumentation ,Graphene field-effect transistor (FET) ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials - Abstract
This study presents the development of a lab-on-a-chip (LoC) by integrating a graphene field-effect transistor (FET) chip with a programmable microfluidic device for DNA detection. The real-time biochemical events on the graphene FET chip were monitored through Dirac voltage shift data from the portable graphene curve reader with changes dependent on the fluidic flow into the sensing interface by a fully automated programmable microfluidic system. High sensitivity with high reliability can be obtained with a nine-graphene sensor layout on a single chip. The portable graphene curve reader also provides a tunable electrical parameter setup and straightforward data acquisition. Fluidic control was performed through a multi-position valve, allowing sequential commands for liquid injection into the polydimethylsiloxane (PDMS) flow cell mounted on the sensing chip. The flow cell design with impinging jet geometry and the microfluidic system packaging offer high precision and portability as a less laborious and low-cost sensing setup. The merged system allows for various functionalities, including probe DNA (pDNA) immobilization, a blocking step, and DNA hybridization with stable signal output autonomously, even in a long-run experimental setup. As a DNA sensor, the proposed prototype has demonstrated a high sensitivity of ~44 mV/decade of target DNA concentration, with an outstanding limit of detection (LoD) of ~0.642 aM, making it one of the most sensitive sensors reported up to date. The programmable device has demonstrated essential versatilities for biomolecular detection in a fully portable and automated platform., This research is supported by PORTGRAPHE-Control of Port and Douro Wines authenticity using graphene DNA sensors project co-funded by Fundação para a Ciência e a Tecnologia (FCT) Portugal (PTDC/BIA-MOL/31069/2017) and the ERDF through COMPETE2020 (POCI-01–0145-FEDER-031069). One of the authors (Telma Domingues) acknowledges a Ph.D. grant from Fundação para a Ciência e a Tecnologia (FCT) Portugal (SFRH/BD/08181/2020). FCT partially supported University of Minho´s research in the Strategic Funding UIDB/04650/2020.
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- 2022
33. A base da Medicina: anatomia como parte fundamental para a formação acadêmica e segurança profissional
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Volz, Laura Elisa, primary, Silva, Elina Marta Prado, additional, Lima, Kamila Rose Alves Sudré, additional, Martins, Jéssica Gabriela Mariano Campos, additional, Brito, Letícia Maria Santos, additional, and Santos, Marcos Vinícios Ferreira dos, additional
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- 2022
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34. Interlaboratory validation of a multiplex qPCR method for the detection of Listeria monocytogenes in a ready-to-eat seafood product
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Sarah Azinheiro, Pedro Rodríguez-López, Antonio Lozano-León, Hugo Guedes, Patricia Regal, Carlos M. Franco, Alberto Cepeda, Pilar Teixeira, Luís D.R. Melo, Daniela Silva, Ana Fernández, Márcia Faria, Foteini Roumani, Juan Herrera, Marta Prado, Marta López-Cabo, Alejandro Garrido-Maestu, Universidade do Minho, INTERREG Atlantic Area, Fundação para a Ciência e a Tecnologia (Portugal), and European Commission
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Interlaboratory validation ,qPCR ,Science & Technology ,Ready-to-eat ,Fish products ,Alternative methods ,Listeria monocytogenes ,Food Science ,Biotechnology - Abstract
6 pages, 4 tables, 1 figure.-- Under a Creative Commons license, Listeria monocytogenes is a major foodborne pathogen which mainly infects susceptible individuals through the consumption of contaminated foods. To this end, ready-to-eat (RTE) food products are of particular concern as this microorganism is widely distributed, can survive, and even grow, under adverse conditions, and thus must be carefully controlled. In the present study, an interlaboratory ring trial was organized to evaluate an open formula qPCR-based method for the detection of L. monocytogenes. The molecular method was evaluated on a novel RTE seafood product, developed in the framework of a European project, the SEAFOODAGE (EAPA_758/2018). Six laboratories located in Spain and Portugal participated in the study, and the results obtained indicated that this new method presented high diagnostic sensitivity (100%) reaching a low limit of detection (, This work was financially supported by the Seafood Age project, which was co-financed by the Interreg Atlantic Area Program (EAPA_758/2018) though the European Development Fund (ERDF). Mrs. Sarah Azinheiro was financed by a Ph.D. grant from the Fundação para a Ciência e a Tecnologia (SFRH/BD/140396/2018). Dr. Alejandro Garrido-Maestu and Luís D. R. Melo acknowledge funding from the Fundação para a Ciência e Tecnologia through the Scientific Employment Stimulus Program (2021.02810. CEECIND and 2021.00221. CEECIND, respectively). This study was supported by the Fundação para a Ciência e a Tecnologia (FCT) under the scope of the strategic funding of UIDB/04469/2020 unit
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- 2023
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35. SARCOMA PRIMÁRIO DO CORAÇÃO COM PROVÁVEL METÁSTASE CEREBRAL: RELATO DE CASO
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Mayra Pereira Souza Barros, Bruno José Santos Lima, Yanne Tavares Santos, Luiz Flávio Andrade Prado, Cleverton Canuto Aragão, Wilson Oliveira Felix, Marco Antonio Silva Robles, Filipe Matias Batista Mota, Matheus Vieira de Moraes, Maria Marta Prado Lima, Victória Maria Fontes dos Reis, and Edenia Soares de Figueiredo Macario
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- 2022
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36. CORRECTION OF PSYCHOACTIVE POISONING IN THE MANAGEMENT OF CARDIORESPIRATORY ARREST
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Menezes, Caroline Nascimento, primary, Pinheiro, Giovanna Brasil, additional, Santos, Beatriz Villar Meneses, additional, Ramos, João Matheus Góes Zedafo, additional, Kitaoka, Henrique Tetsuya Libânio, additional, Souza, Luana Rocha de, additional, Reis, Victoria Maria Fontes dos, additional, Macario, Edenia Soares de Figueiredo, additional, Lima, Maria Marta Prado, additional, Robles, Marco Antonio Silva, additional, Medina, Mariana Sattler Lima, additional, and Mota, Filipe Matias Batista, additional
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- 2022
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37. Development of a Panfungal Recombinase Polymerase Amplification (RPA) Method Coupled with Lateral Flow Strips for the Detection of Spoilage Fungi
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Foteini Roumani, Cristina Rodrigues, Jorge Barros-Velázquez, Alejandro Garrido-Maestu, and Marta Prado
- Subjects
Safety, Risk, Reliability and Quality ,Safety Research ,Applied Microbiology and Biotechnology ,Food Science ,Analytical Chemistry - Published
- 2022
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38. CRISE HIPERTENSIVA: UM QUADRO COMUM NA EMERGÊNCIA
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ANA BEATRIZ ARAUJO DUARTE, ALEXANDRE SALOMÃO DE BRAZ OLIVEIRA, EDENIA SOARES DE FIGUEIREDO MACARIO, MARIA MARTA PRADO LIMA, KARINA SANTOS SILVA, ADRIELLE CALDAS BATISTA DOS SANTOS, MAÍSA CRISTINA FERREIRA RESENDE, CLARA APARECIDA FIGUEIREDO AGUIAR, LHAIS SANTOS DA SILVA, ANNIE CAROLINE JORGE PIMENTEL, ANA CLARA OLIVEIRA BRITO GOMES, DANIEL MACIEL ROSA, CAROLINA MONTEIRO DE MENDONÇA, JOÃO PAULO DE ALMEIDA MACHADO, and MARIA EDUARDA MARTINS DE OLIVEIRA
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- 2022
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39. Real-time PCR, and Recombinase Polymerase Amplification combined with SYBR Green I for naked-eye detection, along with Propidium Monoazide (PMA) for the detection of viable patulin-producing fungi in apples and by-products
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Foteini Roumani, Jorge Barros-Velázquez, Alejandro Garrido-Maestu, and Marta Prado
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Food Science ,Biotechnology - Published
- 2023
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40. Towards on-site detection of gluten-containing cereals with a portable and miniaturized prototype combining isothermal DNA amplification and naked eye detection
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Joana Carvalho, Andrey Ipatov, Laura Rodriguez-Lorenzo, Alejandro Garrido-Maestu, Sarah Azinheiro, Begoña Espiña, Jorge Barros-Velázquez, and Marta Prado
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Spectroscopy ,Analytical Chemistry - Published
- 2022
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41. Amplified plasmonic and microfluidic setup for DNA monitoring
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Anna Toldrà, J. Rafaela L. Guerreiro, Andrey Ipatov, Joana Carvalho, Marta Prado, Producció Animal, and Aigües Marines i Continentals
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Materials science ,Microfluidics ,Immobilized Nucleic Acids ,Signal ,Dreissena ,DNA sequencing ,Analytical Chemistry ,Nanosensor ,Lab-On-A-Chip Devices ,Animals ,Surface plasmon resonance ,Plasmon ,Detection limit ,chemistry.chemical_classification ,Nanotubes ,business.industry ,Biomolecule ,Nucleic Acid Hybridization ,DNA ,Microfluidic Analytical Techniques ,Surface Plasmon Resonance ,Seafood ,chemistry ,Optoelectronics ,Gold ,DNA Probes ,business ,Nanospheres - Abstract
Plasmonic nanosensors for label-free detection of DNA require excellent sensing resolution, which is crucial when monitoring short DNA sequences, as these induce tiny peak shifts, compared to large biomolecules. We report a versatile and simple strategy for plasmonic sensor signal enhancement by assembling multiple (four) plasmonic sensors in series. This approach provided a fourfold signal enhancement, increased signal-to-noise ratio, and improved sensitivity for DNA detection. The response of multiple sensors based on AuNSpheres was also compared with AuNRods, the latter showing better sensing resolution. The amplification system based on AuNR was integrated into a microfluidic sequential injection platform and applied to the monitoring of DNA, specifically from environmental invasive species—zebra mussels. DNA from zebra mussels was log concentration-dependent from 1 to 1 × 106 pM, reaching a detection limit of 2.0 pM. In situ tests were also successfully applied to real samples, within less than 45 min, using DNA extracted from zebra mussel meat. The plasmonic nanosensors’ signal can be used as a binary output (yes/no) to assess the presence of those invasive species. Even though these genosensors were applied to the monitoring of DNA in environmental samples, they potentially offer advantage in a wide range of fields, such as disease diagnostics. info:eu-repo/semantics/acceptedVersion
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- 2021
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42. Suitability of the MinION long read sequencer for semi-targeted detection of foodborne pathogens
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Sarah Azinheiro, Joana Carvalho, Marta Prado, Alejandro Garrido-Maestu, and Foteini Roumani
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Chemistry ,Library preparation ,Computational biology ,medicine.disease_cause ,Escherichia coli O157 ,Biochemistry ,DNA extraction ,Listeria monocytogenes ,Sensitivity and Specificity ,DNA sequencing ,Analytical Chemistry ,Salmonella enteritidis ,Minion ,medicine ,Food Microbiology ,Environmental Chemistry ,Lower cost ,Targeted detection ,Spectroscopy - Abstract
Foodborne pathogens are still a significant source of morbidity and mortality worldwide. In addition to this the current methodologies to track these microorganisms cannot cope with the current intensive production systems, thus novel methods are of outmost importance. DNA-based methods have already demonstrated suitable to address this issue, but most of them are targeted methods such as real-time PCR (qPCR), meaning that one will only find what is looking for, thus taking the risk of missing relevant pathogens in a given sample. To overcome this limitation we have developed an easy-to-implement methodology which enables the detection of several pathogens simultaneously by using long-read Next Generation Sequencing (NGS) with MinION. The method was named “semi-targeted” due to the combination of a non-targeted detection method, NGS, with the usage of selective media in order to partially eliminate non-pathogenic interfering bacteria. To this end, we included an enrichment step for the recovery of different pathogens, namely Salmonella Enteritidis and Typhimurium, Listeria monocytogenes and Escherichia coli O157:H7, after DNA extraction and library preparation, the samples were analyzed with MinION implementing the low-cost Flongle Flow Cells. The methodology was successfully evaluated in spiked milk samples with an excellent agreement with the results obtained by qPCR and culture-based methods. The method can provide accurate results after only 2 h of sequencing. Sample multiplexing, along with the lower cost of the Flongle Flow Cells and the reduced price of the MinION platform, make the assay cost-effective that is of importance for the food industry. Starting the method with a classical microbiological approach, the enrichment, the method is easy to implement in testing laboratories, it provides flexibility in terms of potential pathogens to be detected, and the positive results can be easily confirmed following culture-based, or other type, of confirmation procedures.
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- 2021
43. Supervivencia y perfil de víctimas de trauma abdominal con o sin politrauma evaluadas por los métodos TRISS y TRISS-like atendidos en un hospital de urgencia y emergencia
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Aragão, Davi Anchieta de, Dias, Edna Santos, Galdino , Lorena Pina, Lima, Maria Marta Prado, Queiroz, Álvaro Andrade Góis, Lima, Ricardo Gois de, Andrade, Evlyn Karolayne Bispo, Andrade, Renata Lima Batalha, Menezes, José Walmir Bezerra de, Paixão, Nathália Brandi, Jesus, Carla Viviane Freitas de, and Lima, Sonia Oliveira
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Análise de sobrevida ,Índices de gravidade do trauma ,Análisis de supervivencia ,Trauma abdominal ,Abdominal trauma ,Índices de gravedad del trauma ,Survival analysis ,Trauma severity indices - Abstract
Introduction: Abdominal trauma has high morbidity and mortality, and it is essential for its diagnosis would be made faster to minimize injuries. In order to achieve the quality of support protocols for the traumatized victim, programs are used, using the severity indices. Objective: To assess the profile of victims of abdominal trauma, with or whithout politrauma, using the severity indices TRISS and TRISS-like, attended in a critical axis of an urgency and emergency hospital in the state of Sergipe. Methods: Cross-sectional, prospective observational study, with a quantitative approach to victims of abdominal trauma. It was used an instrument of its own elaboration, having as a base or instrument of Domingues (2013), that provides objective questions with physiological and sociodemographic data on the topography and clinical information of the study. Results: Sample of 42 patients, obtained a mean of 33.1 years, with 81% being male and 19% female, whereas 61.9% were affected by transport with a difference between mechanisms. blunt 66.7% and penetrating mechanism 33.3%. All the accidents 100% received pre-hospital care, being that 28.6% died and 50% required ICU care. The TRISS-like group has a lower probability of survival than the TRISS (7.1% vs 97.2%). Conclusion: Due to the predominant cause of abdominal trauma, there was an accident of transport as a contusive mechanism prevailing, mostly homens, adults, with an average age of 33.1 years. All the victims receive pre-hospital support and a considerable death tax. Introducción: El traumatismo abdominal tiene una alta morbimortalidad, por lo que es fundamental que su diagnóstico se realice lo antes posible para minimizar las lesiones. Para mejorar la calidad de los protocolos de apoyo a la víctima traumatizada, se utilizan programas, utilizando los índices de gravedad. Objetivo: Evaluar el perfil de víctimas de traumatismo abdominal, con o sin politraumatismo, utilizando los índices de gravedad TRISS y TRISS-like, atendidos en el eje crítico de un hospital de referencia en urgencia y emergencia en el estado de Sergipe. Métodos: Estudio transversal, observacional, prospectivo, con abordaje cuantitativo a víctimas de traumatismo abdominal. Se utilizó un instrumento de elaboración propia, basado en el instrumento Domingues (2013), el cual tiene preguntas objetivas con datos fisiológicos y sociodemográficos sobre la topografía e información clínica del estudio. Resultados: De la muestra de 42 pacientes se obtuvo una edad promedio de 33,1 años, siendo 81% varones y 19% mujeres, de los cuales 61,9% sufrió un accidente de transporte con diferencia entre mecanismo romo 66,7% y mecanismo penetrante 33,3%. Todos los accidentes tuvieron un 100% de atención prehospitalaria, un 28,6% murieron y un 50% necesitaron atención en UCI. El grupo similar a TRISS tuvo una menor probabilidad de supervivencia que el grupo TRISS (7,1% frente a 97,2%). Conclusión: La causa predominante de traumatismo abdominal fue un accidente de transporte con mecanismo contundente, mayoritariamente hombres, adultos, con una edad media de 33,1 años. Todas las víctimas tenían apoyo prehospitalario y una tasa de mortalidad considerable. Introdução: O trauma abdominal tem uma alta morbidade e mortalidade, e é fundamental que o seu diagnóstico seja feito o mais rápido possível para minimizar as lesões. Com o objetivo de melhorar a qualidade dos protocolos de suporte à vítima traumatizada, são utilizados programas, usando os índices de gravidade. Objetivo: Avaliar o perfil das vítimas de trauma abdominal, com ou sem politrauma, utilizando os índices de gravidade TRISS e TRISS-like, atendidas no eixo crítico de um hospital referência em urgência e emergência do estado de Sergipe. Métodos: Estudo transversal, observacional do tipo prospectivo, com abordagem quantitativa das vítimas de trauma abdominal. Utilizou-se um instrumento de elaboração própria, tendo como base o instrumento de Domingues (2013), que possui questões objetivas com dados fisiológicos e sociodemográficos sobre a topografia e informações clínicas do estudo. Resultados: Da amostra de 42 pacientes, obteve-se uma média de idade de 33,1 anos, com 81% sendo do sexo masculino e 19% sendo do sexo feminino, em que 61,9% sofreu acidente de transporte com diferença entre mecanismo contuso 66,7% e mecanismo penetrante 33,3%. Todos os acidentes 100% tiveram atendimento pré-hospitalar, sendo que 28,6% foram a óbito e 50% precisaram de cuidados em UTI. O grupo TRISS-like teve menor probabilidade de sobrevida que o TRISS (7,1% vs 97,2%). Conclusão: A causa predominante de trauma abdominal foi acidente de transporte com o mecanismo contuso prevalecendo, maior parte homens, adultos, idade média de 33,1 anos. Todas as vítimas tiveram suporte pré-hospitalar e a taxa de óbito considerável.
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- 2021
44. Dual colorimetric strategy for specific DNA detection by nicking endonuclease-assisted gold nanoparticle signal amplification
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Andrey Ipatov, Monisha Elumalai, Joana Carvalho, Marta Prado, and Joana Rafaela Lara Guerreiro
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Metal Nanoparticles ,Biosensing Techniques ,Biochemistry ,DNA sequencing ,Analytical Chemistry ,Endonuclease ,chemistry.chemical_compound ,Limit of Detection ,Environmental DNA ,Detection limit ,biology ,Chemistry ,Water ,DNA ,biology.organism_classification ,Endonucleases ,DNA, Environmental ,Colloidal gold ,biology.protein ,Zebra mussel ,Colorimetry ,Naked eye ,Gold ,Nucleic Acid Amplification Techniques - Abstract
The continuous spread of invasive alien species, as zebra mussel (Dreissena polymorpha), is a major global concern and it is urgent to stop it. Early stages of an invasion are crucial and challenging; however, detection tools based on environmental DNA analysis are promising alternatives. We present an alternative DNA target amplification strategy for signal enhancement followed by dual-mode colorimetric naked eye and optical smartphone analysis for the early detection of zebra mussel environmental DNA. Target amplification was designed based on the nicking endonuclease probe cleavage upon probe and complementary target hybridization. The cleaved/intact probe interacts with DNA-modified nanoparticles for colorimetric detection. We have demonstrated that enzyme amplification strategy enhanced 12-fold the sensitivity by naked eye detection, achieving a detection limit of ~8 nM (4.48×1010 copies) in controlled conditions, whereas target in complex environmental samples allowed the detection of 22.5 nM (1.26×1011 copies). Competitive assays also showed that the system can discriminate specific zebra mussel DNA sequences from other DNA sequences. Additionally, smartphone analysis for DNA quantification further improved the sensitivity of its detection by 130-fold, more than 2 orders of magnitude, when applied to environmental samples. The limit of detection to 0.17 nM (9.52×108 copies) is based on RGB coordinates, which is especially relevant to monitor early aggregation stages, being more accurate and reducing naked eye detection subjectivity. DNA extracted from zebra mussel meat, zebra mussel contaminated river water, and non-contaminated river water samples were successfully tested. Dual-mode colorimetric detection is useful in field analysis without the need for expensive laboratory equipment.
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- 2021
45. Influence of the Electrolyte Salt Concentration on DNA Detection with Graphene Transistors
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Marta Prado, Joana Rafaela Lara Guerreiro, Andrey Ipatov, Pedro Alpuim, Jérôme Borme, Marco Martins, Catarina M. Abreu, Telma Domingues, Agnes Purwidyantri, and Universidade do Minho
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Electron mobility ,Materials science ,Transistors, Electronic ,Ciências Naturais::Ciências Físicas ,salts ,lcsh:Biotechnology ,Clinical Biochemistry ,Kinetics ,Ciências Físicas [Ciências Naturais] ,phosphate buffer (PB) ,Ionic bonding ,02 engineering and technology ,Electrolyte ,Biosensing Techniques ,010402 general chemistry ,01 natural sciences ,Article ,law.invention ,symbols.namesake ,Electrolytes ,law ,lcsh:TP248.13-248.65 ,Debye length ,Science & Technology ,Graphene ,Intermolecular force ,graphene ,General Medicine ,DNA ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,liquid gate ,Chemical physics ,Ionic strength ,symbols ,Graphite ,0210 nano-technology ,phosphate buffer saline (PBS) - Abstract
Liquid-gated Graphene Field-Effect Transistors (GFET) are ultrasensitive bio-detection platforms carrying out the graphene&rsquo, s exceptional intrinsic functionalities. Buffer and dilution factor are prevalent strategies towards the optimum performance of the GFETs. However, beyond the Debye length (&lambda, D), the role of the graphene-electrolytes&rsquo, ionic species interactions on the DNA behavior at the nanoscale interface is complicated. We studied the characteristics of the GFETs under different ionic strength, pH, and electrolyte type, e.g., phosphate buffer (PB), and phosphate buffer saline (PBS), in an automatic portable built-in system. The electrostatic gating and charge transfer phenomena were inferred from the field-effect measurements of the Dirac point position in single-layer graphene (SLG) transistors transfer curves. Results denote that &lambda, D is not the main factor governing the effective nanoscale screening environment. We observed that the longer &lambda, D was not the determining characteristic for sensitivity increment and limit of detection (LoD) as demonstrated by different types and ionic strengths of measuring buffers. In the DNA hybridization study, our findings show the role of the additional salts present in PBS, as compared to PB, in increasing graphene electron mobility, electrostatic shielding, intermolecular forces and DNA adsorption kinetics leading to an improved sensitivity.
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- 2021
46. A multivalent aptamer-based electrochemical biosensor for biomarker detection in urinary tract infection
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Mohsen Mohammadniaei, Maryam Naseri, Arnab Halder, Yi Sun, Jon Ashley, and Marta Prado
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Aptamer ,General Chemical Engineering ,02 engineering and technology ,010402 general chemistry ,01 natural sciences ,chemistry.chemical_compound ,SDG 3 - Good Health and Well-being ,Electrochemistry ,Screen-printed gold electrode ,Urinary tract infection ,Chromatography ,biology ,Chemistry ,Lactoferrin ,Buffer solution ,Electrochemical biosensor ,021001 nanoscience & nanotechnology ,0104 chemical sciences ,Dielectric spectroscopy ,Biomarker ,Linear range ,biology.protein ,Differential pulse voltammetry ,0210 nano-technology ,Biosensor - Abstract
Lactoferrin is a multifunctional protein of the transferrin family and is known as a biomarker for various clinical diseases including urinary tract infection (UTI). However, wide concentration range of lactoferrin in urine samples due to the high interpatient variations, requires a more practical biosensor. In this article, we used a novel multivalent aptamer immobilized on the surface of screen-printed gold electrode (aptamer/SPGE) to develop the first electrochemical aptasensor for label-free detection of lactoferrin with wide dynamic detection range and high sensitivity. The performance of the fabricated biosensor was tested using electrochemical impedance spectroscopy and differential pulse voltammetry. The multivalent aptamer as the bioreceptor with high affinity and good specificity against human lactoferrin, acts to enhance the electrochemical signals and widen the working window. The aptamer/SPGE demonstrates superior sensing performances for lactoferrin in buffer solution, with a wide linear range of 10 to 1300 ng/mL with LOD of 0.9 ng/mL, as well as high selectivity, and excellent reproducibility. Besides, the constructed aptasensor was successfully applied to quantify lactoferrin concentrations in spiked urine solutions. Owing to excellent sensitivity, ease of miniaturization, simple sensing procedure, low-cost, and fast response, the proposed electrochemical aptasensor indicates a great potential towards the development of lactoferrin analysis systems, which would be helpful in the early diagnosis of UTI.
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- 2021
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- View/download PDF
47. Sobrevida e perfil de vítimas de trauma abdominal com ou sem politrauma avaliadas pelos métodos TRISS e TRISS-like atendidas em um hospital de urgência e emergência
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Aragão, Davi Anchieta de, primary, Dias, Edna Santos, additional, Galdino, Lorena Pina, additional, Lima, Maria Marta Prado, additional, Queiroz, Álvaro Andrade Góis, additional, Lima, Ricardo Gois de, additional, Andrade, Evlyn Karolayne Bispo, additional, Andrade, Renata Lima Batalha, additional, Menezes, José Walmir Bezerra de, additional, Paixão, Nathália Brandi, additional, Jesus, Carla Viviane Freitas de, additional, and Lima, Sonia Oliveira, additional
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- 2021
- Full Text
- View/download PDF
48. Evaluation of simple sequence repeats (SSR) and single nucleotide polymorphism (SNP)-based methods in olive varieties from the Northwest of Spain and potential for miniaturization
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Shambhavi Yadav, Sarah Azinheiro, Alejandro Garrido-Maestu, Jorge Barros-Velázquez, Isabel Trujillo, Joana Carvalho, and Marta Prado
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Miniaturization ,Traceability ,Nutrition. Foods and food supply ,Computer science ,Allele-specific qPCR ,Single-nucleotide polymorphism ,Single nucleotide polymorphisms ,Computational biology ,High Resolution Melt ,Simple sequence repeats ,Microsatellite ,SNP ,TX341-641 ,Cultivated olive ,Genotyping ,HRM ,Olive oil - Abstract
Miniaturization of DNA-based techniques can bring interesting advantages for food analysis, such as portability of complex analytical procedures. In the olive oil industry, miniaturization can be particularly interesting for authenticity and traceability applications, through in situ control of raw materials before production and/or the final products. However, variety identification is challenging, and implementation on miniaturized settings must be carefully evaluated, starting from the selected analytical approach. In this work, SSR- and SNP-based genotyping strategies were investigated for the identification and differentiation of two olive varieties from the Northwest of Spain. For the selected SNPs two genotyping methods were tested: real-time allele-specific PCR and high resolution melting analysis. These methods were compared and evaluated regarding their potential for integration in a microfluidic device. Both SNP-based methods proved to be successful for identification of the selected varieties, however real-time allele-specific PCR was the one that achieved the best results when analyzing mixtures, allowing the identification of both monovarietal samples and mixtures of the varieties tested with up to 25%.
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- 2020
49. 2 New techniques in environment monitoring
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Begoña Espiña, Marta Prado, Marilia B. dos Santos, Laura M. Salonen, Raquel B. Queirós, Soraia P.S. Fernandes, Stephanie Vial, and Verónica C. Martins
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- 2020
- Full Text
- View/download PDF
50. Single-use microfluidic device for purification and concentration of environmental DNA from river water
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Joana Carvalho, Marta Prado, Joana Rafaela Lara Guerreiro, Andrey Ipatov, Lorena Diéguez, Sarah Azinheiro, and Alejandro Garrido-Maestu
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Analyte ,Chromatography ,Chemistry ,Elution ,010401 analytical chemistry ,Microfluidics ,Water ,Fresh Water ,02 engineering and technology ,DNA ,Contamination ,Microfluidic Analytical Techniques ,021001 nanoscience & nanotechnology ,01 natural sciences ,DNA extraction ,DNA, Environmental ,0104 chemical sciences ,Analytical Chemistry ,chemistry.chemical_compound ,Lab-On-A-Chip Devices ,DNA fragmentation ,Environmental DNA ,0210 nano-technology - Abstract
Purification and concentration of DNA is a critical step on DNA-based analysis, which should ensure efficient DNA isolation and effective removal of contaminants that may interfere with downstream DNA amplification. Complexity of samples, minute content of target analyte, or high DNA fragmentation greatly entangles the success of this step. To overcome this issue, we designed and fabricated a novel miniaturized disposable device for a highly efficient DNA purification. The microfluidic device showed binding efficiency and elution yield of 90.1% and 86.7%, respectively. Moreover, the effect of DNA fragmentation, a parameter that has not been previously addressed, showed a great impact in the recovery step. The microfluidic system integrated micropillars with chitosan being used as the solid-phase for a pH-dependent DNA capture and release. We have showed the potential of the device in the successful purification of environmental DNA (eDNA) from river water samples contaminated with Dreissena polymorpha, an invasive alien species responsible for unquestionable economic and environmental consequences in river water basins. Additionally, the device was also able to concentrate the DNA extract from highly diluted samples, showing promising results for the early detection of such invasive species, which may allow prompt measures for a more efficient control in affected areas. Suitability for integration with downstream DNA analysis was also demonstrated through qPCR analysis of the samples purified with the microfluidic device, allowing detection of the target species even if highly diluted.
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- 2020
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