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Marine and freshwater ecosystems differ in persistence, size, population connectivity, and the variance in physical and biotic conditions they experience. These differences may select for differing reproductive modes, life histories, dispersal strategies, and chemically cued recruitment behaviors. In marine systems, adults are commonly less mobile, while larvae spend hours to weeks to months dispersing in the plankton and may move over great distances. It is these immature larval stages that must select appropriate recruitment sites in marine environments. In freshwater systems, the fully developed adults more commonly disperse over greater distances, and it is usually adults that determine juvenile recruitment sites via their placement of larvae or fertilized eggs. Thus, in terms of large-scale habitat choices involving chemical cuing, adult stages should be selected to detect and react to habitat cues among most freshwater species, while juveniles should play this role among most marine species. Few studies assess this hypothesis, but adults of freshwater organisms as different as mosquitoes and frogs do key on chemical cues to select sites for depositing eggs or larvae, while chemical cuing of recruitment in marine systems occurs primarily among the larval stages of the numerous fishes and marine invertebrates investigated to date. Cues to general habitat features, to predators or competitors, and to specific prey or hosts have all been shown to affect recruitment. Here, we review chemically mediated recruitment in marine versus freshwater systems, summarizing what is known and suggesting unknowns that may be productive to investigate.

Interactions among species are likely to change geographically due to climate-driven species range shifts and in intensity due to physiological responses to increasing temperatures. Marine ectotherms experience temperatures closer to their upper thermal limits due to the paucity of temporary thermal refugia compared to those available to terrestrial organisms. Thermal limits of marine ectotherms also vary among species and trophic levels, making their trophic interactions more prone to changes as oceans warm. We assessed how temperature affects reef fish trophic interactions in the Western Atlantic and modeled projections of changes in fish occurrence, biomass, and feeding intensity across latitudes due to climate change. Under ocean warming, tropical reefs will experience diminished trophic interactions, particularly herbivory and invertivory, potentially reinforcing algal dominance in this region. Tropicalization events are more likely to occur in the northern hemisphere, where feeding by tropical herbivores is predicted to expand from the northern Caribbean to extratropical reefs. Conversely, feeding by omnivores is predicted to decrease in this area with minor increases in the Caribbean and southern Brazil. Feeding by invertivores declines across all latitudes in future predictions, jeopardizing a critical trophic link. Most changes are predicted to occur by 2050 and can significantly affect ecosystem functioning, causing dominance shifts and the rise of novel ecosystems., SI

Description, Coral diversity positively affects corals, but these benefits have limits and are threatened by ongoing species loss., Species loss threatens ecosystems worldwide, but the ecological processes and thresholds that underpin positive biodiversity effects among critically important foundation species, such as corals on tropical reefs, remain inadequately understood. In field experiments, we manipulated coral species richness and intraspecific density to test whether, and how, biodiversity affects coral productivity and survival. Corals performed better in mixed species assemblages. Improved performance was unexplained by competition theory alone, suggesting that positive effects exceeded agonistic interactions during our experiments. Peak coral performance occurred at intermediate species richness and declined thereafter. Positive effects of coral diversity suggest that species’ losses on degraded reefs make recovery more difficult and further decline more likely. Harnessing these positive interactions may improve ecosystem conservation and restoration in a changing ocean.

In contrast to expectations of the enemy release hypothesis, but consistent with the notion of biotic resistance, we found that native generalist crayfishes preferred exotic over native freshwater plants by a 3 : 1 ratio when plants were paired by taxonomic relatedness. Native crayfishes also preferred exotic over native plants when tested across 57 native and 15 exotic plants found growing sympatrically at 11 sites throughout the southeastern USA. Exotic grass carp that share little evolutionary history with most of these plants exhibited no preference for native vs. exotic species. Analyses of three terrestrial data sets showed similar patterns, with native herbivores generally preferring exotic plants, while exotic herbivores rarely exhibited a preference. Thus, exotic plants may escape their coevolved herbivores only to be preferentially consumed by the native generalist herbivores in their new ranges, suggesting that native herbivores may provide biotic resistance to plant invasions.

Human-driven threats to coastal marine communities could potentially affect chemically mediated behaviours that have evolved to facilitate crucial ecological processes. Chemical cues and their importance remain inadequately understood in marine systems, but cues from coastal vegetation can provide sensory information guiding aquatic animals to key resources or habitats. In the tropics, mangroves are a ubiquitous component of healthy coastal ecosystems, associated with a range of habitats from river mouths to coral reefs. Because mangrove leaf litter is a predictable cue to coastal habitats, chemical information from mangrove leaves could provide a source of settlement cues for coastal fishes, drawing larvae towards shallow benthic habitats or inducing settlement. In choice assays, juvenile fishes from the Caribbean (Belize) and Indo-Pacific (Fiji) were attracted to cues from mangroves leaves and were more attracted to cues from mangroves distant from human settlement. In the field, experimental reefs supplemented with mangrove leaves grown away from humans attracted more fish recruits from a greater diversity of species than reefs supplemented with leaves grown near humans. Together, this suggests that human use of coastal areas alters natural chemical cues, negatively affecting the behavioural responses of larval fishes and potentially suppressing recruitment. Overall, our findings highlight the critical links that exist between marine and terrestrial habitats, and the importance of considering these in the broader conservation and management of coastal ecosystems.

Background Impacts of biotic stressors, such as consumers, on coral microbiomes have gained attention as corals decline worldwide. Corallivore feeding can alter coral microbiomes in ways that contribute to dysbiosis, but feeding strategies are diverse – complicating generalizations about the nature of consumer impacts on coral microbiomes. Results In field experiments, feeding by Coralliophila violacea, a parasitic snail that suppresses coral growth, altered the microbiome of its host, Porites cylindrica, but these impacts were spatially constrained. Alterations in microbial community composition and variability were largely restricted to snail feeding scars; basal or distal areas ~ 1.5 cm or 6–8 cm away, respectively, were largely unaltered. Feeding scars were enriched in taxa common to stressed corals (e.g. Flavobacteriaceae, Rhodobacteraceae) and depauperate in putative beneficial symbionts (e.g. Endozoicomonadaceae) compared to locations that lacked feeding. Conclusions Previous studies that assessed consumer impacts on coral microbiomes suggested that feeding disrupts microbial communities, potentially leading to dysbiosis, but those studies involved mobile corallivores that move across and among numerous individual hosts. Sedentary parasites like C. violacea that spend long intervals with individual hosts and are dependent on hosts for food and shelter may minimize damage to host microbiomes to assure continued host health and thus exploitation. More mobile consumers that forage across numerous hosts should not experience these constraints. Thus, stability or disruption of microbiomes on attacked corals may vary based on the foraging strategy of coral consumers.

A number of tropical reefs have transitioned from coral to macroalgal dominance, but the role of macroalgal competition in coral decline is debated. There is a need to understand the relative roles of direct coral-algal effects versus indirect, microbially mediated effects shaping these interactions, as well as the relevant scales at which interactions operate under natural field, as opposed to laboratory, conditions. We conducted a manipulative field experiment investigating how direct contact versus close proximity (approx. 1.5 cm) with macroalgae ( Galaxaura rugosa , Sargassum polycystum ) impacted the growth, photosynthetic efficiency, and prokaryotic microbiome of the common Indo-Pacific coral Acropora millepora . Both coral growth and photosynthetic efficiency were suppressed when in direct contact with algae or their inert mimics––but not when in close proximity to corals without direct contact. Coral microbiomes were largely unaltered in composition, variability, or diversity regardless of treatment, although a few uncommon taxa differed in abundance among treatments. Negative impacts of macroalgae were contact dependent, accounted for by physical structure alone and had minimal effects on coral microbiomes. The spatial constraints of these interactions have important implications for understanding and predicting benthic community dynamics as reefs degrade.

As carbon dioxide (CO2) levels increase, coral reefs and other marine systems will be affected by the joint stressors of ocean acidification (OA) and warming. The effects of these two stressors on coral physiology are relatively well studied, but their impact on biotic interactions between corals are poorly understood. While coral-coral interactions are less common on modern reefs, it is important to document the nature of these interactions to better inform restoration strategies in the face of climate change. Using a mesocosm study, we evaluated whether the combined effects of ocean acidification and warming alter the competitive interactions between the common coral Porites astreoides and two other mounding corals (Montastraea cavernosa or Orbicella faveolata) common in the Caribbean. After 7 days of direct contact, P. astreoides suppressed the photosynthetic potential of M. cavernosa by 100% in areas of contact under both present (~28.5°C and ~400 μatm pCO2) and predicted future (~30.0°C and ~1000 μatm pCO2) conditions. In contrast, under present conditions M. cavernosa reduced the photosynthetic potential of P. astreoides by only 38% in areas of contact, while under future conditions reduction was 100%. A similar pattern occurred between P. astreoides and O. faveolata at day 7 post contact, but by day 14, each coral had reduced the photosynthetic potential of the other by 100% at the point of contact, and O. faveolata was generating larger lesions on P. astreoides than the reverse. In the absence of competition, OA and warming did not affect the photosynthetic potential of any coral. These results suggest that OA and warming can alter the severity of initial coral-coral interactions, with potential cascading effects due to corals serving as foundation species on coral reefs.

Loss of larger consumers from stressed ecosystems can lead to trophic release of mid-level consumers that then impact foundation species, suppressing ecosystem function and resilience. For example, in coral reef ecosystems, outbreaks of coral predators like crown-of-thorns sea stars have been associated with fishing pressure and can dramatically impact the composition and persistence of corals. However, the ecological impacts, and consequences for management, of smaller, less obvious corallivores remain inadequately understood. We investigated whether reef state (coral vs. seaweed domination) influenced densities and size frequencies of the corallivorous gastropod Coralliophila violacea on its common host, the coral Porites cylindrica, within three pairs of small Marine Protected Areas (MPAs) and adjacent fished areas in Fiji. C. violacea densities were 5-35 times greater, and their size frequencies more broadly distributed, within seaweed-dominated fished areas than in adjacent MPAs dominated by corals. Tethering snails (4-9 mm in shell height) in place on their coral hosts indicated that suppression of snails in MPAs was due to predation, apparently by fishes. When tethered on the benthos (where they rarely occur), rather than on their host, mortality of larger snails (15.0-25.0 mm in shell height) was high in all areas, primarily due to hermit crabs killing them and occupying their shells. Because C. violacea is a sessile gastropod that feeds affixed to the base of corals and produces minimal visible damage, it has been considered a "prudent feeder" that minimally impacts its host coral. We assessed this over a 24-d feeding period in the field. Feeding by individual C. violacea reduced P. cylindrica growth by ~18-43% depending on snail size. Our findings highlight the considerable, but underappreciated, negative impacts of this common corallivore on degraded reefs. As reefs degrade and corals are lost, remaining corals (often species of Porites) may gain the full attention of elevated densities of coral consumers. This will further damage the remaining foundation species, suppressing the resilience of corals and enhancing the resilience of degraded, seaweed-dominated reefs.

Tropical reefs are shifting from coral to macroalgal dominance, with macroalgae suppressing coral recovery, potentially via effects on coral microbiomes. Understanding how macroalgae affect corals and their microbiomes requires comparing algae- versus coral-dominated reefs without confounding aspects of time and geography. We compared survival, settlement, and post-settlement survival of larvae, as well as the microbiomes of larvae and adults, of the Pacific coral Pocillopora damicornis between an Marine Protected Area (MPA) dominated by corals versus an adjacent fished area dominated by macroalgae. Microbiome composition in adult coral, larval coral, and seawater did not differ between the MPA and fished area. However, microbiomes of adult coral were more variable in the fished area and Vibrionaceae bacteria, including strains most closely related to the pathogen Vibrio shilonii, were significantly enriched, but rare, in adult and larval coral from the fished area. Larvae from the macroalgae-dominated area exhibited higher pre-settlement mortality and reduced settlement compared to those from the coral-dominated area. Juveniles planted into a coral-dominated area survived better than those placed into a fished area dominated by macroalgae. Differential survival depended on whether macroalgae were immediately adjacent to juvenile coral rather than on traits of the areas per se. Contrary to our expectations, coral microbiomes were relatively uniform at the community level despite dramatic differences in macroalgal cover between the MPA (~2% cover) and fished (~90%) area. Reducing macroalgae may elicit declines in rare but potentially harmful microbes in coral and their larvae, as well as positive intergenerational effects on offspring survival.

Coral reefs are degrading to algae-dominated reefs worldwide, with alterations of coral microbiomes commonly co-occurring with reef demise. The severe thermal anomaly during the 2016 El Nino event in the South Pacific killed many corals and stressed others. We examined the microbiome of turf algae and of the coral Porites sp. in contact with turf during this thermal event to investigate algal turf effects on the coral microbiome during a period of environmental stress. The microbial composition of turf did not differ between coral-contacted and non-contacted turfs. However, microbiomes of corals in direct contact with turf were similar to those of the turf microbiome, but differed significantly from coral portions 5 cm from the point of turf/coral contact and from portions of the coral that looked most healthy, regardless of location. Although the majority of significant differences occurred in coral samples at the point of contact, a small subset of microbial taxa was enriched in coral tissues taken 5 cm from turf contact compared to all other sample types, including samples from areas of the coral that appeared most healthy. These results suggest that the coral microbiome is susceptible to colonization by microbes from turf, but not vice versa. Results also suggest that algal contact elicits a subtle shift in the coral microbiome just beyond the contact site. The combination of turf microbiome stability and coral microbiome vulnerability at areas of contact may contribute to the continued decline in coral cover and increase in algal cover associated with coral–algae phase shifts.

Numerous seaweeds produce secondary metabolites that are allelopathic to corals. To date, most of the compounds identified in this interaction are lipid-soluble instead of water-soluble. Thus, understanding whether these compounds are stored internally where they would not contact corals, or occur on external surfaces where they could be transferred to corals, is critical to understanding seaweed–coral interactions and to informing realistic experiments on chemically mediated interactions. We conducted field experiments assessing the effects of lipid-soluble extracts from macroalgal surfaces alone versus total lipid-soluble extracts from both internal and external tissues on the coral Pocillopora verrucosa. Extracts of the red algae Amansia rhodantha and Asparagopsis taxiformis, the green alga Chlorodesmis fastigiata, and the brown alga Dictyota bartayresiana suppressed coral photochemical efficiency; in these bioactive species, the total lipid-soluble extracts were not more potent than surface-only extracts despite the concentration of total extracts being many times greater than surface-only extracts. This suggests that previous assays with total extracts may be ecologically meaningful, but also that future assays should be conducted with the simpler, less concentrated, and more ecologically relevant surface extracts. Allelopathic effects of As. taxiformis and C. fastigiata were significantly greater than the effect of D. bartayresiana, with effects of Am. rhodantha intermediate between these groups. Neither surface-only nor total lipid-soluble extracts of the seaweed Turbinaria ornata were allelopathic, and its lack of potency differed significantly from all other species. Our results suggest that lipid-soluble, allelopathic compounds are usually deployed on seaweed surfaces where they can be effective in surface-mediated interactions against other species.

Local management enhances a coral’s defense against a thermal-bleaching pathogen., Bleaching and disease are decimating coral reefs especially when warming promotes bleaching pathogens, such as Vibrio coralliilyticus. We demonstrate that sterilized washes from three common corals suppress V. coralliilyticus but that this defense is compromised when assays are run at higher temperatures. For a coral within the ecologically critical genus Acropora, inhibition was 75 to 154% greater among colonies from coral-dominated marine protected areas versus adjacent fished areas that were macroalgae-dominated. Acropora microbiomes were more variable within fished areas, suggesting that reef degradation may also perturb coral microbial communities. Defenses of a robust poritid coral and a weedy pocilloporid coral were not affected by reef degradation, and microbiomes were unaltered for these species. For some ecologically critical, but bleaching-susceptible, corals such as Acropora, local management to improve reef state may bolster coral resistance to global change, such as bacteria-induced coral bleaching during warming events.

Ecosystem Recovery Since 1999, broadcasting more than 70 million seeds of the seagrass Zostera marina into coastal lagoons in Virginia has led to the reestablishment of more than 3600 hectares of previously lost seagrass beds. Orth et al. found that seagrass recovery led to rapid increases in the production and diversity of animals, increases in carbon and nitrogen sequestration, decreases in turbidity, and increases in previously depleted bay scallops. This is one of the larger success stories of ecosystem restoration and demonstrates that reversal of ecological collapse is possible when sustained initial efforts lead to positive feedbacks that support ecosystem recovery. Sci. Adv. 10.1126/sciadv.abc6434 (2020).

Coral reefs are declining dramatically and losing species richness, but the impact of declining biodiversity on coral well-being remains inadequately understood. Here, we demonstrate that lower coral species richness alone can suppress the growth and survivorship of multiple species of corals (Porites cylindrica, Pocillopora damicornis and Acropora millepora) under field conditions on a degraded, macroalgae-dominated reef. Our findings highlight the positive role of biodiversity in the function of coral reefs, and suggest that the loss of coral species richness may trigger negative feedback that causes further ecosystem decline. Sixteen-month manipulation experiments in a degraded macroalgae-dominated tropical reef setting show that lower coral species richness suppresses growth and survivorship of multiple species.

Tropical reefs are commonly transitioning from coral- to macroalgal-dominance, producing abrupt, and often lasting, shifts in community composition and ecosystem function. Although negative effects of macroalgae on corals are well documented, whether such effects vary with spatial scale or the density of macroalgae remains inadequately understood, as does the legacy of their impact on coral growth. Using closely adjacent coral- versus macroalgal-dominated areas, we tested effects of macroalgal competition on the Indo-Pacific corals Acropora millepora and Porites cylindrica. When corals were transplanted to areas of: i) macroalgal-dominance, ii) macroalgal-dominance but with nearby macroalgae removed, or iii) coral-dominance lacking macroalgae, coral growth was equivalently high in plots without macroalgae and low (62-90% less) in plots with macroalgae, regardless of location. In a separate experiment, we raised corals above the benthos in each area and exposed them to differing densities of the dominant macroalga Sargassum polycystum. Coral survivorship was high (≥ 93% after 3 months) and did not differ among treatments, whereas the growth of both coral species decreased as a function of Sargassum density. When Sargassum was removed after two months, there was no legacy effect of macroalgal density on coral growth over the next seven months; however, there was no compensation for previously depressed growth. In sum, macroalgal impacts were density dependent, occurred only if macroalgae were in close contact, and coral growth was resilient to prior macroalgal contact. The temporal and spatial constraints of these interactions suggest that corals may be surprisingly resilient to periodic macroalgal competition, which could have important implications for ecosystem trajectories that lead to reef decline or recovery.

Marine Protected Areas (MPAs) are often established to mitigate the effects of overfishing and other human disturbances. In Fiji these are locally managed and, where enforced, have significantly higher coral cover, higher fish biomass, and lower seaweed cover than in the adjacent, unprotected reefs (non-MPAs). We investigated how the isotopic signatures of a common, mid-level consumer, Epinephelus merra, differed among three small (0.5- 0.8km2) MPAs versus adjacent, unprotected reefs. Isotopic ratios suggested that the fish in the MPAs fed higher in the food chain than those in the adjacent non-MPAs, despite being slightly smaller in size. Calculations using a brown alga as representative of the basal level of the food chain estimate this difference to be about half a trophic level. Thus, the isotopic ratio of a mid-level consumer can be noticeably altered over scales of only a few hundred meters. This may result from more complete food webs and hence greater prey choice and availability in the MPAs and implies that MPAs affect not only species’ abundance and diversity, but also diet composition and trophic biology of member individuals. Our findings suggest E. merra exhibits considerable site fidelity in its feeding biology and thus provides a localized isotopic signal of its reef of residence. If the isotopic signal of this mid-level carnivore is reflective of the composition of the food web beneath it, the signal might provide an easily obtained indication of reef conditions in that area.

There are many examples of macroalgae inducing defence in response to small invertebrate herbivores like amphipods, isopods, and gastropods but few cases of induction in response to vertebrate macrograzers like herbivorous fishes. This may be because larger grazers rapidly consume large quantities of seaweed before induction can occur, thus selecting for constitutive rather than induced defences. Alternatively, the pattern could occur because induction due to feeding by macrograzers is less commonly investigated. In Fiji, field assays with the brown macroalga Sargassum polycystum demonstrated that thalli growing in marine protected areas (MPAs) with abundant herbivorous fishes were significantly less palatable than those growing in adjacent fished areas (non-MPAs) with few herbivorous fishes. This significant preference occurred in 11 of 13 trials over 5 time periods and across 3 pairs of MPAs and spatially associated non-MPAs. This preference was not positively associated with algal nitrogen content or with the toughness of algal fronds. When S. polycystum ramets were taken from the non-MPA and half were partially grazed by fishes while the other half were protected from grazing, new growth from the controls was strongly preferred to new growth from the previously grazed ramets although these fronds originated from the same holdfast. This suggests that S. polycystum upregulates defences (probably chemical) in response to grazing by herbivorous fishes. This is one of the few published examples of induction of macroalgal defence in response to feeding by large, mobile grazers. It is unclear whether induced defences against fishes are rare or just under-investigated.

Coral reefs are among Earth’s best-studied ecosystems, yet the degree to which large predators influence the ecology of coral reefs remains an open and contentious question. Recent studies indicate the consumptive effects of large reef predators are too diffuse to elicit trophic cascades. Here, we provide evidence that such predators can produce non-consumptive (fear) effects that flow through herbivores to shape the distribution of seaweed on a coral reef. This trophic cascade emerged because reef topography, tidal oscillations, and shark hunting behaviour interact to create predictable “hot spots” of fear on the reef where herbivores withhold feeding and seaweeds gain a spatial refuge. Thus, in risky habitats, sharks can exert strong ecological impacts even though they are trophic generalists that rarely feed. These findings contextualize the debate over whether predators influence coral reef structure and function and move us to ask not if, but under what specific conditions, they generate trophic cascades.

Herbivory occurs when animals consume plants; but the term hides two fundamentally different processes. One relates to the animal's nutrition, the other to the plant's survival and abundance. Both are central to the ecological process called herbivory. Evolutionary innovations in herbivore function have shaped shallow marine ecosystems from kelp forests to coral reefs.

On Caribbean coral reefs, high rates of grazing by herbivorous fishes are thought to benefit corals because fishes consume competing seaweeds. We conducted field experiments in the Florida Keys, USA, to examine the effects of grazing fishes on coral/seaweed competition. Initially, fragments of Porites divaracata from an inshore habitat were transplanted into full-cage, half-cage, and no-cage treatments on a fore-reef. Within 48 h, 56% of the unprotected corals in half-cage and no-cage treatments (62 of 111) were completely consumed. Stoplight parrotfish (Sparisoma viride) were the major coral predators, with redband parrotfish (S. aurofrenatum) also commonly attacking this coral. Next, we transplanted fragments of P. porites collected from the fore-reef habitat where our caging experiments were being conducted into the three cage treatments, half in the presence of transplanted seaweeds, and half onto initially clean substrates. The corals were allowed to grow in these conditions, with concurrent development of competing seaweeds, for 14 weeks. Although seaweed cover and biomass were both significantly greater in the full-cage treatment, coral growth did not differ significantly between cage treatments even though corals placed with pre-planted seaweeds grew significantly less than corals placed on initially clean substrate. This surprising result occurred because parrotfishes not only grazed algae from accessible treatments, but also fed directly on our coral transplants. Parrotfish feeding scars were significantly more abundant on P. porites from the half and no-cage treatments than on corals in the full cages. On this Florida reef, direct fish predation on some coral species (P. divaracata) can exclude them from fore-reef areas, as has previously been shown for certain seaweeds and sponges. For other corals that live on the fore-reef (P. porites), the benefits of fishes removing seaweeds can be counterbalanced by the detrimental effects of fishes directly consuming corals.

Many coral reefs have phase shifted from coral to macroalgal dominance. Ocean acidification (OA) due to elevated CO2 is hypothesised to advantage macroalgae over corals, contributing to these shifts, but the mechanisms affecting coral-macroalgal interactions under OA are unknown. Here, we show that (i) three common macroalgae are more damaging to a common coral when they compete under CO2 concentrations predicted to occur in 2050 and 2100 than under present-day conditions, (ii) that two macroalgae damage corals via allelopathy, and (iii) that one macroalga is allelopathic under conditions of elevated CO2, but not at ambient levels. Lipid-soluble, surface extracts from the macroalga Canistrocarpus (=Dictyota) cervicornis were significantly more damaging to the coral Acropora intermedia growing in the field if these extracts were from thalli grown under elevated vs ambient concentrations of CO2. Extracts from the macroalgae Chlorodesmis fastigiata and Amansia glomerata were not more potent when grown under elevated CO2. Our results demonstrate increasing OA advantages seaweeds over corals, that algal allelopathy can mediate coral-algal interactions, and that OA may enhance the allelopathy of some macroalgae. Other mechanisms also affect coral-macroalgal interactions under OA, and OA further suppresses the resilience of coral reefs suffering blooms of macroalgae.

Seaweed–coral interactions are increasingly common on modern coral reefs, but the dynamics, processes, and mechanisms affecting these interactions are inadequately understood. We investigated the frequency and effect of seaweed–coral contacts for common seaweeds and corals in Belize. Effects on corals were evaluated by measuring the frequency and extent of bleaching when contacted by various seaweeds, and effects on a common seaweed were evaluated by assessing whether contact with coral made the seaweed more palatable to the sea urchin Diadema antillarum. Coral–seaweed contacts were particularly frequent between Agaricia corals and the seaweed Halimeda opuntia, with this interaction being associated with coral bleaching in 95 % of contacts. Pooling across all coral species, H. opuntia was the seaweed most commonly contacting corals and most frequently associated with localized bleaching at the point of contact. Articulated coralline algae, Halimeda tuna and Lobophora variegata also frequently contacted corals and were commonly associated with bleaching. The common corals Agaricia and Porites bleached with similar frequency when contacted by H. opuntia (95 and 90 %, respectively), but Agaricia experienced more damage than Porites when contacted by articulated coralline algae or H. tuna. When spatially paired individuals of H. opuntia that had been in contact with Agaricia and not in contact with any coral were collected from the reefs and offered to D. antillarum, urchins consumed about 150 % more of thalli that had been competing with Agaricia. Contact and non-contact thalli did not differ in nutritional traits (ash-free-dry-mass, C or N concentrations), suggesting that Halimeda chemical defenses may have been compromised by coral–algal contact. If competition with corals commonly enhances seaweed palatability, then the dynamics and nuances of small-scale seaweed–coral–herbivore interactions at coral edges are deserving of greater attention in that such interactions could scale-up to have important consequences for coral resilience and the persistence of reef structure and function.

Attached is the complete raw data from Dixson et al. 2014 "Chemically mediated behavior of recruiting corals and fishes: A tipping point that may limit reef recovery." Data has been inputted into Excel with different tabs that are color coded. All data corresponding to fish behavioral choice data collected using a 2 chamber Atema flume can be found in red. Data for the fish species have been further broken into 15 separate tabs, each corresponding to a different fish species tested. All data corresponding to the coral behavioral choice data collected using a 2 chamber Atema flume can be found in yellow. Laboratory settlement data for coral preferences can be found in green. Field recruitment data for both fish and corals are labeled in blue, using 2 separate tabs. Chemical choice flume data for fishes recorded the individual position in either water stream taken every 5 seconds for 2 minutes. The water sources were then switched and an additional 2 minute test period occurred with the position of the individuals recorded again every 5 seconds. Resulting in a total of 48 position points recorded. Data is set up so that an individual is recorded per row. The first part of the trial for each individual is found in the first two columns, after the water is switched the data for the second part of the trial is found in columns three and four. For example, on the first tab, for Chromis viridis, water from the MPA and Non-MPA taken from Votua Village were tested against each other. Column L and M have data from the first part of the trial, column N and O have data after the water sources were switched. The score in column P is the total times an individual was in one of the columns, in this example the MPA water from Votua village. The individual average, column Q, is the score data, column P, divided by 48 and multiplied by 100, resulting in the percent time spent in one water source. Below the individual average column for each set of chemical data is the mean average, standard deviation and standard error. Coral choice data is set up identical to the fish data however instead of recordings taken every 5 seconds for 2 minutes, coral behavioral data was taken for 3 minutes, therefore a total position recorded is 72.

Many reefs have shifted from coral and fish dominated habitats to less productive macroalgal dominated habitats, and current research is investigating means of reversing this phase shift. In the tropical Pacific, overfished reefs with inadequate herbivory can become dominated by the brown alga Sargassum polycystum. This alga suppresses recruitment and survival of corals and fishes, thus limiting the potential for reef recovery. Here we investigate the mechanisms that reinforce S. polycystum dominance and show that in addition to negatively affecting other species, this species acts in a self-reinforcing manner, positively promoting survival and growth of conspecifics. We found that survival and growth of both recruit-sized and mature S. polycystum fronds were higher within Sargassum beds than outside the beds and these results were found in both protected and fished reefs. Much of this benefit resulted from reduced herbivory within the Sargassum beds, but adult fronds also grew ~50% more within the beds even when herbivory did not appear to be occurring, suggesting some physiological advantage despite the intraspecific crowding. Thus via positive feedbacks, S. polycystum enhances its own growth and resistance to herbivores, facilitating its dominance (perhaps also expansion) and thus its resilience on degraded reefs. This may be a key feedback mechanism suppressing the recovery of coral communities in reefs dominated by macroalgal beds.

Coral reefs are in global decline, with seaweeds increasing as corals decrease. Although seaweeds inhibit coral growth, recruitment, and survivorship, the mechanism of these interactions is poorly understood. Here, we used field experiments to show that contact with four common seaweeds induces bleaching on natural colonies of Porites rus. Controls in contact with inert, plastic mimics of seaweeds did not bleach, suggesting seaweed effects resulted from allelopathy rather than shading, abrasion, or physical contact. Bioassay-guided fractionation of the hydrophobic extract from the red alga Phacelocarpus neurymenioides revealed a previously characterized antibacterial metabolite, neurymenolide A, as the main allelopathic agent. For allelopathy of lipid-soluble metabolites to be effective, the compounds would need to be deployed on algal surfaces where they could transfer to corals on contact. We used desorption electrospray ionization mass spectrometry (DESI-MS) to visualize and quantify neurymenolide A on the surface of P. neurymenioides, and we found the molecule on all surfaces analyzed, with highest concentrations on basal portions of blades.

Bioassay-guided fractionation of extracts from a Fijian red alga in the genus Callophycus resulted in the isolation of five new compounds of the diterpene-benzoate class. Bromophycoic acids A-E (1-5) were characterized by NMR and mass spectroscopic analyses and represent two novel carbon skeletons, one with an unusual proposed biosynthesis. These compounds display a range of activities against human tumor cell lines, malarial parasites, and bacterial pathogens including low micromolar suppression of MRSA and VREF.

During recent decades, many tropical reefs have transitioned from coral to macroalgal dominance. These community shifts increase the frequency of algal–coral interactions and may suppress coral recovery following both anthropogenic and natural disturbance. However, the extent to which macroalgae damage corals directly, the mechanisms involved, and the species specificity of algal–coral interactions remain uncertain. Here, we conducted field experiments demonstrating that numerous macroalgae directly damage corals by transfer of hydrophobic allelochemicals present on algal surfaces. These hydrophobic compounds caused bleaching, decreased photosynthesis, and occasionally death of corals in 79% of the 24 interactions assayed (three corals and eight algae). Coral damage generally was limited to sites of algal contact, but algae were unaffected by contact with corals. Artificial mimics for shading and abrasion produced no impact on corals, and effects of hydrophobic surface extracts from macroalgae paralleled effects of whole algae; both findings suggest that local effects are generated by allelochemical rather than physical mechanisms. Rankings of macroalgae from most to least allelopathic were similar across the three coral genera tested. However, corals varied markedly in susceptibility to allelopathic algae, with globally declining corals such as Acropora more strongly affected. Bioassay-guided fractionation of extracts from two allelopathic algae led to identification of two loliolide derivatives from the red alga Galaxaura filamentosa and two acetylated diterpenes from the green alga Chlorodesmis fastigiata as potent allelochemicals. Our results highlight a newly demonstrated but potentially widespread competitive mechanism to help explain the lack of coral recovery on many present-day reefs.

Tydemania expeditionis Weber-van Bosse (Udoteaceae) is a weakly calcified green alga. In the present paper, liquid chromatography coupled with photodiode array detection and electrospray mass spectrometry was developed to identify the fingerprint components. A total of four triterpenoid sulfates and three hydroxy fatty acids in the ethyl acetate fraction of the crude extract were structurally characterized on the basis of retention time, online UV spectrum, and mass fragmentation pattern. Furthermore, a detailed liquid chromatography-mass spectrometry analysis revealed two new hydroxy fatty acids, which were then prepared and characterized by extensive nuclear magnetic resonance (NMR) analyses. The proposed method provides a scientific and technical platform for the rapid identification of triterpenoid sulfates and hydroxy fatty acids in similar marine algae and terrestrial plants.

For small sedentary herbivores that inhabit seaweeds, choosing a host that provides adequate nutrition and refuge should be favored by natural selection. Yet, the relative importance of seaweed nutritional value versus habitat quality in driving mesograzer host choice remains poorly understood for most herbivores. Previous work in coastal North Carolina, USA, and 2 tropical locations suggests that amphipods often utilize host seaweeds that offer superior refuge from both omni vorous and carnivorous consumers. Our study was conducted in New Zealand, where carnivores alone are the major consumers of seaweed-dwelling amphipods. We show that the herbivorous amphipod Aora typica preferentially utilizes the dictyotalean seaweed Dictyota kunthii over a dominant canopy-forming kelp, Ecklonia radiata, and that this preferred seaweed host provides a superior refuge from predators in both laboratory and field experiments. There was no difference in A. typica feeding preference between D. kunthii and E. radiata, but A. typica grew faster when reared on E. radiata. These results suggest that seaweed refuge quality, not nutritional quality, drives A. typica host preference and distribution in this system.

Herbivory is an important driver of community structure on coral reefs. Adequate understanding of herbivory will mandate better knowledge of how specific herbivores impact reef communities and the redundancy versus complementarity of their ecological roles. We used algal communities generated by herbivore manipulations to assess such roles among Caribbean herbivorous fishes. We created large enclosures on a 16- to 18-m-deep reef to create treatments grazed for 10 months by: (1) only Sparisoma aurofrenatum, (2) only Acanthurus bahianus, (3) no large herbivorous fishes, or (4) natural densities of all reef fishes. After 10 months, we removed cages and filmed how free-ranging reef fishes fed among these treatments that differed in algal community structure. In general, Acanthurus spp. and Scarus spp. rapidly grazed exclosure and Sparisoma-only treatments, while Sparisoma spp. preferentially grazed exclosure and Acanthurus-only treatments. These patterns suggest complementarity between Sparisoma spp. and both Acanthurus spp. and Scarus spp. but redundancy between Acanthurus spp. and Scarus spp. Despite these generalities, there was also within-genera variance in response to the different treatments. For example, large Scarus spp., such as Scarus guacamaia, fed more similarly to Sparisoma spp., particularly Sparisoma viride, than to other Scarus spp. Moreover, the three common Sparisoma species differed considerably in the macroalgae to which they exhibited positive or negative relationships. Thus, herbivorous reef fishes vary considerably in their response to different algal communities and exhibit complex patterns of compensatory feeding and functional redundancy that are poorly predicted by taxonomy alone.

Three antimalarial meroditerpenes have been isolated from two Fijian red macroalgae. The absolute stereochemistry of callophycolide A (1), a unique macrolide from Callophycus serratus, was determined using a combination of Mosher's ester analysis, circular dichroism analysis with a dimolybdenum tetraacetate complex, and conformational analysis using NOEs. In addition, two known tocopherols, β-tocopherylhydroquinone (4) and δ-tocopherylhydroquinone (5), were isolated from Amphiroa crassa. By oxidizing 5 to the corresponding δ-tocopherylquinone (6), antimalarial activity against the human malaria parasite Plasmodium falciparum was increased by more than 20-fold.

The United States hosts one native and five non-native species of aquatic apple snails (Ampullariidae). All are currently found in or around the Everglades in Florida. Two of these introduced species have devastated wetlands in Southeast Asia, but little is known about how they may impact the Everglades. To evaluate potential impacts of introduced apple snails relative to the native species, we investigated plant species preference, consumption rates, growth rates, and growth efficiencies in five introduced and the single native species across eight native macrophytes common in the Everglades. Three of the non-native snails are invasive, one has shown no tendency to expand, and one appears to have minimal direct impact on macrophytes due to its diet. All snails exhibited similar feeding preferences, with Utricularia sp. being the most preferred, Bacopa caroliniana, Sagittaria latifolia, and Nymphaea odorata being of intermediate preference, and Eleocharis cellulosa, Pontederia cordata, Panicum hemitomon and Typha sp. being least preferred (avoided as foods). Consumption and growth was minimal for P. diffusa on all macrophytes. On Utricularia sp. and Bacopa caroliniana, the invasive species Pomacea insularum and P. canaliculata tended to eat more, grow more, and have higher conversion efficiencies than the native P. paludosa or the non-invasive P. haustrum. These contrasts were more often significant for P. insularum than for P. canaliculata. The greater rates of expansion by the invasive species may derive from their enhanced feeding and growth rates.

Four new bromophycolides, R–U (1–4), were isolated from the Fijian red alga Callophycus serratus and were identified by 1D and 2D NMR and mass spectroscopic analyses. These compounds expand the known structural variety of diterpene-benzoate macrolides and exhibited modest cytotoxicity toward selected human cancer cell lines. Bromophycolide S (2) also showed submicromolar activity against the human malaria parasite Plasmodium falciparum.

Coral reefs are in global decline, with seaweeds replacing corals as spatial dominants. Overfishing of herbivores, anthropogenic eutrophication, and interactions between these factors have been postulated as causes, but long-term tests of these factors are uncommon. We factorially manipulated herbivorous fishes and nutrients at a depth of 16 to 18 m for 7 to 10 mo in 2 experiments over 2 yr. Herbivore exclusion increased algal cover by about 4 to 10 ×, algal biomass by 4 to 6 ×, and suppressed cover of crustose coralline algae by 80 to 100%. Nutrient enrichment had no effect on the cover or mass of upright algae, but altered species composition by suppressing cyanobacteria and facilitating red macroalgae in the absence of herbivores. Nutrient addition increased macroalgal spe- cies richness in the absence, but not the presence of herbivores. Feeding by herbivorous fishes increased by 3 to 13 × on nutrient-enriched vs. control plots. This herbivory facilitated cover of crus- tose coralline algae, demonstrated that herbivores selectively target more nutritional prey, and sug- gested that herbivores could suppress macrophyte accumulation at sites with increased nutrient availability. Effects of fishes and nutrients on corals varied as a function of coral species. For the branching coral Porites porites, 56% of individuals exposed to fishes were completely consumed; however, individuals that survived grew 60 to 80% more in the presence of fishes. For Porites astreoides, exposure to fishes did not affect mortality, but increased net growth by 3 to 4 times. For this coral, nutrient addition decreased growth when exposed to fishes but not when protected from fishes, suggesting that fishes may have fed more on nutrient-enriched corals.

We conducted a 20-week manipulative field experiment on shallow forereefs of the Florida Keys to assess the separate and interactive effects of herbivory and nutrient enrichment on the development of macroalgal communities and the fitness of the corals Porites porites and Siderastrea siderea. Excluding large herbivorous fishes produced macrophyte blooms both with and without nutrient enrichment. In contrast, there were no direct effects of nutrient enrichment. There were, however, small, but significant, interactive effects of herbivory and enrichment on macroalgal cover. Following nutrient enrichment, total macroalgae and the common seaweeds Dictyota spp. were suppressed in the presence, but not in the absence, of large herbivorous fishes—suggesting that fishes were selectively feeding on nutrient-enriched macrophytes. Access by large herbivores prevented algal overgrowth of corals, but these large fishes also directly grazed both corals. Excluding fishes did not alter survivorship of either coral species, but did decrease parrotfish grazing scars on both corals and increased the net growth of P. porites. Nutrient additions had no direct effects on the survivorship of corals, but there was a trend (P = 0.097) for nutrients to stimulate the growth of P. porites. The preponderance of experiments available to date indicates that loss of key herbivores is a major factor driving macroalgal blooms on coral reefs; anthropogenic nutrient pollution generally plays a more minor role.

Bromophycolides J-Q (1-8) were isolated from extracts of the Fijian red alga Callophycus serratus and identified with 1D and 2D NMR spectroscopy and mass spectral analyses. These diterpene-benzoate macrolides represent two novel carbon skeletons and add to the ten previously reported bromophycolides (9-18) from this alga. Among these 18 bromophycolides, several exhibited activities in the low micromolar range against the human malaria parasite Plasmodium falciparum.

Chemical cues constitute much of the language of life in the sea. Our understanding of biotic interactions and their effects on marine ecosystems will advance more rapidly if this language is studied and understood. Here, I review how chemical cues regulate critical aspects of the behavior of marine organisms from bacteria to phytoplankton to benthic invertebrates and water column fishes. These chemically mediated interactions strongly affect population structure, community organization, and ecosystem function. Chemical cues determine foraging strategies, feeding choices, commensal associations, selection of mates and habitats, competitive interactions, and transfer of energy and nutrients within and among ecosystems. In numerous cases, the indirect effects of chemical signals on behavior have as much or more effect on community structure and function as the direct effects of consumers and pathogens. Chemical cues are critical for understanding marine systems, but their omnipresence and impact are inadequately recognized.