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Abstract Pythium sensu lato (s.l.) is a genus of parasitic oomycetes that poses a serious threat to agricultural production worldwide, but their severity is often neglected because little knowledge about them is available. Using an internal transcribed spacer (ITS) amplicon-based-metagenomics approach, we investigate the occurrence, abundance, and diversity of Pythium spp. s.l. in 127 corn fields of 11 European countries from the years 2019 to 2021. We also identify 73 species, with up to 20 species in a single soil sample, and the prevalent species, which show high species diversity, varying disease potential, and are widespread in most countries. Further, we show species-species co-occurrence patterns considering all detected species and link species abundance to soil parameter using the LUCAS topsoil dataset. Infection experiments with recovered isolates show that Pythium s.l. differ in disease potential, and that effective interference with plant hormone networks suppressing JA (jasmonate)-mediated defenses is an essential component of the virulence mechanism of Pythium s.l. species. This study provides a valuable dataset that enables deep insights into the structure and species diversity of Pythium s.l. communities in European corn fields and knowledge for better understanding plant-Pythium interactions, facilitating the development of an effective strategy to cope with this pathogen.

Abstract Background This study aimed to validate slaughterhouse indicators collected during meat inspection as an alternative to on-farm animal welfare indicators. For this purpose, the assessments of twelve on-farm and seven slaughterhouse indicators of 628 pigs from three different farms were combined into three indices, differentiated between on-farm and slaughterhouse: (1) limb health, (2) other organ health, and (3) respiratory health. At first, an assessment at animal-level using agreement parameters was carried out to ascertain whether the same welfare or health issues were identified on-farm and at slaughterhouse, taking the production period (farrowing, rearing and fattening period) and the last weeks before slaughtering into account. Second, the connection of slaughterhouse findings on the individual on-farm health indices was examined using logistic regressions, to determine whether certain welfare issues can be better monitored using slaughterhouse indicators. Results Acceptable agreement was determined using the Prevalence-Adjusted Bias-Adjusted Kappa (PABAK) for the farrowing and fattening period, but not for the rearing period. A more detailed analysis of the weeks before slaughter shows that there is still a poor agreement 8 weeks before slaughter and an acceptable agreement 4 weeks before slaughter. This indicated the slaughterhouse indicators pneumonia, pleuritis and pericarditis as possible estimators of fever and deviant behavior on-farm and the slaughterhouse indicators bursitis and joint inflammations as possible estimators of lameness. In the second part of the analysis, the connection of slaughterhouse findings on the individual on-farm health indices was investigated; a significant influence of the farm on the limb and respiratory indices and no significant influence of the slaughterhouse findings could be determined, provided that all weekly assessments during the lifetime of the pigs have been taken into account. However, an influence of the slaughterhouse findings on the respiratory index and on the other organ index could be determined if only the weekly assessments four and eight weeks before slaughter, respectively, were taken into account. Conclusions In general, the possible suitable indicators detected by the PABAK, could replace some health-related indicators but a complete substitution of on-farm welfare assessment is not possible. In addition, the traceability over time must be investigated further.

Quinoa (Chenopodium quinoa Willd.) can offer an alternative for staple food considering its tolerance to abiotic stresses and high seed quality. However, its cultivation in temperate regions has not been successful due to its photoperiod sensitivity and low seed yield. This study investigated the agronomical performance and quality traits of 48 accessions for cultivation in northern Europe. We conducted two-year field trials and phenotyped traits related to phenological development, plant architecture, yield components, seed quality, and disease resistance. The major determinants of seed yield in this study were days to flowering, days to maturity, thousand-kernel weight, and panicle density, while downy mildew susceptibility and stem lodging showed a negative correlation with seed yield. We developed a selection index to enable simultaneous selection based on different important agronomical traits. We evaluated the stability of different accessions over the two years of the experiment. Finally, we provided a list of 10 selected accessions that can be directly integrated and serve as new crossing parents in quinoa breeding programs for temperate regions.

Besides the well-understood qualitative disease resistance, plants possess a more complex quantitative form of resistance: quantitative disease resistance (QDR). QDR is commonly defined as a partial but more durable form of resistance and, therefore, might display a valuable target for resistance breeding. The characterization of QDR phenotypes, especially of wild crop relatives, displays a bottleneck in deciphering QDR’s genomic and regulatory background. Moreover, the relationship between QDR parameters, such as infection frequency, lag-phase duration, and lesion growth rate, remains elusive. High hurdles for applying modern phenotyping technology, such as the low availability of phenotyping facilities or complex data analysis, further dampen progress in understanding QDR. Here, we applied a low-cost (

Abstract Lower bone mass in older adults may be mediated by the endocrine crosstalk between muscle, adipose tissue and bone. In 150 community-dwelling adults (59–86 years, BMI 17–37 kg/m2; 58.7% female), skeletal muscle mass index, adipose tissue and fat mass index (FMI) were determined. Levels of myokines, adipokines, osteokines, inflammation markers and insulin were measured as potential determinants of bone mineral content (BMC) and density (BMD). FMI was negatively associated with BMC and BMD after adjustment for mechanical loading effects of body weight (r-values between −0.37 and −0.71, all p

Abstract Background It remains unknown why adiponectin levels are associated with poor physical functioning, skeletal muscle mass and increased mortality in older populations. Methods In 190 healthy adults (59–86 years, BMI 17–37 kg/m2, 56.8% female), whole body skeletal muscle mass (normalized by height, SMI, kg/m2), muscle and liver fat were determined by magnetic resonance imaging. Bone mineral content (BMC) and density (BMD) were assessed by dual X‐ray absorptiometry (n = 135). Levels of insulin‐like growth factor 1 (IGF‐1), insulin, inflammation markers, leptin and fibroblast growth factor 21 were measured as potential determinants of the relationship between adiponectin and body composition. Results Higher adiponectin levels were associated with a lower SMI (r = −0.23, P

The European corn borer is a major pest of corn that overwinters in corn stubble and stalks. Shredding these residues disrupts the larvae’s habitat or directly harms them. A corn header has been engineered with a new type of cutting tool on its horizontal choppers, featuring sharp edges and dulled flails, to shred corn stubble near the soil surface. This study investigated the effect of the dulled flails on the shredding intensity of corn stover. Field trials compared flail knives with standard knives for particle size distribution of corn stover and structural integrity of corn stalk segments. Additionally, a common two-step method, which involved a standard knives-equipped corn header followed by tractor-driven flail mowers, was tested. The flail knives reduced the mean particle size by 3.6 mm compared to the standard knives. Subsequent processing with tractor-driven flail mowers, following the corn header using standard knives, led to a reduction in mean particle size by 11.8 mm. It also further reduced the number of incompletely destroyed stalk segments. However, completely intact internodes were scarce in all methods. Given that flail knives enhance shredding intensity without a second processing step, this concept is concluded to be effective for corn stover shredding.

Abstract An in vitro Hohenheim gas test was conducted to analyze the fermentation end-products from 17 cultivars of eight polyphenol containing forage species. The polyphenol composition and proanthocyanidin (PA) structural features of all the cultivars were analyzed with UPLC-MS/MS in leaves of vegetative or generative plants. The samples were incubated with and without polyethylene glycol (PEG, a tannin-binding agent) to separate the tannin-effect on methane (CH4, ml/200 mg DM) production from that of forage quality. Sulla and big trefoil, two particularly PA rich species, were found to have the highest CH4 reduction potential of up to 47% when compared to the samples without PEG. However, concomitant reduction in gas production (GP, ml/200 mg DM) of up to 44% was also observed. An increase in both GP and CH4 production under PEG treatments, confirms the role of tannins in CH4 reduction. Moreover, PA structural features and concentration were found to be an important source of variation for CH4 production from PA containing species. Despite having low polyphenol concentrations, chicory and plantain were found to reduce CH4 production without reducing GP. Additionally, interspecies variability was found to be higher than intraspecies variability, and these results were consistent across growth stages, indicating the findings’ representativeness.

The application of fungicides in maize by the commonly used overhead spraying technique is more challenging than in small-grain cereals. Especially in later development stages, when the plant has reached a considerable height, lower plant organs (e.g., ears) may be insufficiently protected, since a large part of the applied fungicide is deposited on the upper leaves. In contrast, lower plant organs can be reached by the dropleg spraying technique, which allows sub-canopy applications. This study investigated the efficacy of fungicide applications during flowering in forage maize using the overhead and dropleg spraying techniques as well as a combination for the control of Kabatiella zeae and mycotoxin-producing Fusarium species, which can affect leaves and ears, respectively. The efficacy was evaluated in field trials under natural K. zeae and artificial Fusarium inoculum conditions in Northern Germany by measuring disease severities of K. zeae on maize leaves, dry matter yields, and concentrations of the Fusarium mycotoxins deoxynivalenol (DON) and zearalenone (ZEN) at harvest. Fusarium inoculations of main ears at full flowering resulted in significantly higher DON and ZEN concentrations compared to natural Fusarium infections, whereas the dry matter yield was not affected. The strongest disease progressions of K. zeae were determined after flowering on the upper leaves and leaves around the main ear. Disease severities were significantly reduced on the upper leaves by the overhead application and the combination of the overhead and dropleg spraying technique, whereby the three spraying techniques were equally able to decrease the infestation on the yield-essential leaves around the main ear. No differences in dry matter yield were found between the application techniques, but they were significantly higher than in the untreated control. The contamination with DON and ZEN was most effectively reduced by sub-canopy applications using the dropleg technique, whether as a solo application or in combination with the overhead technique. The main ears were reached better with the applied fungicide, reducing Fusarium infections, and therefore, contamination with mycotoxins. The dropleg technique offers an opportunity for improved protection of lower plant organs, especially in tall growing crops. In combination with the overhead spraying technique, the protection of various plant organs along the entire plant with the applied fungicide could be advantageous, especially when different parts of the plant are affected by different fungal diseases.

This study aims to evaluate the efficiency of a new type of corn header equipped with flail knives that shreds corn stubble close to the ground. A field trial was carried out to quantify the influence of the shredding tool design (flail knives, standard knives, horizontal choppers disengaged), harvesting speed (1.5, 3.0, 4.5, 6.0 km/h) and cutting height (approx. 20 cm variation, 4 levels) on the power consumption of the corn header, engine load and fuel consumption of the combine harvester. The regression analyses revealed that modifications of the shredding tool assembly have significant effects on the parameters of the functional relationships. The power consumption of the flail knives configuration was 15 kW/row unit at 6 km/h at the lowest cutting height setting, making it compatible with most current combine harvester models. The additional power demand and fuel consumption that arise when switching to the new shredding tool design (flail knives) show a wide range, depending on the initial situation. Compared to the standard knives at 6 km/h, the additional power consumption was 3.6–5.5 kW/row unit and the additional fuel consumption was 2.6–3.9 L/ha. Compared to the configuration with disengaged horizontal choppers, it was 5.3–6.6 kW/row unit and 3.9–5.1 L/ha, respectively. At 90% engine load the additional power requirement was 1.6–3.1 kW/row unit and the additional fuel consumption was 2.9–5.6 L/ha compared to the standard knives configuration and 2.6–3.6 kW/row unit and 5.6–7.2 L/ha respectively, compared to the configuration with disengaged horizontal choppers.

Septoria tritici blotch (STB), caused by the fungus Zymoseptoria tritici Desm., is the most important disease affecting wheat in Northern Europe. There is a strong correlation between STB and weather variables; therefore, research on climate change and epidemiology is essential. In a long-term survey across 25 years, we evaluated the epidemiological development of STB at a representative location under maritime climatic conditions. The surveys conducted between 1996 and 2021 showed an increase in disease severity of STB with respect to time. At the survey location, the plants were also evaluated for other diseases, but other foliar diseases were only observed with negligible severities. However, a continuous increase in the severity of STB was observed throughout the survey. During the survey period, there was no significant relationship between disease severity and single weather parameters (e.g., temperature and precipitation). However, seasonal changes in the progression of conducive STB conditions within the season were observed during the survey. Therefore, STB infections occurred at increased temperatures due to infections later during the growth season. In general, the distribution of conducive weather conditions, which supports an infection, determines the epidemiological behaviour of STB during the growing season. Due to these enhanced STB epidemics, a decline in wheat production has been observed, especially in agronomic practices of maritime climates. This is particularly the case if temperature and precipitation during the growing season are affected by climate change.

There is an urgent global need for the ecological intensification of agricultural systems to reduce negative impacts on the environment while meeting the rising demand for agricultural products. Enriching grasslands with floral species is a tool to promote diversity and the associated services at higher trophic levels, and ultimately, to enhance the agricultural landscape matrix. Here, we studied an organic pastures-based dairy production system with plant species enhanced grass–clover pastures with respect to the effect on the activity density, functional traits, carabid assemblages, and species richness of carabid beetles. To understand the effect of land management on carabid beetles, we studied two types of grass–clover pastures with low and relatively high plant diversities in an integrated crop–livestock rotational grazing system (ICLS). As a comparison, organic permanent grasslands and conventionally managed maize were studied. We installed pitfall traps for three weeks in early summer, and for two weeks in autumn. In total, 11,347 carabid beetles of 66 species were caught. Grass–clover pastures did not differ in activity density, functional traits, habitat guilds, or species richness, but conventional maize did show a higher activity density in autumn and a higher proportion of eurytopic species and mobile species compared to grass–clover pastures. On grass–clover pastures, we found more endangered species, Carabus beetles, and a distinct carabid assemblage compared to maize. However, we attribute the lack of an effect of increased plant diversity of the grass–clover pastures on carabid species richness and functional traits to the intensive grazing regime, which resulted in the compositional and structural homogeneity of vegetation. Still, the presence of specialized and endangered species indicated the potential for organically managed grass–clover pastures to promote dispersal through an otherwise depleted and fragmented agricultural landscape. By increasing crop diversity in ICLS, more resources for foraging and nesting are created; therefore, organically managed grass–clover pastures add to the multi-functionality of agricultural landscapes.

Socioeconomic status (SES) is strongly associated with childhood overweight. The underlying mechanism and the role of family and lifestyle factors as potential mediators of this relationship remain, however, unclear. Cross-sectional data of 4,772 girls and boys aged 5–16 years from the Kiel Obesity Prevention Study were considered in mediation analyses. Fat mass (FM) was assessed by bioelectrical impedance analysis and converted into a percent FM SD score (FM%-SDS). SES was defined by the parental educational level, classified as low, middle, or high. Characteristics of family and lifestyle factors were obtained via validated questionnaires and considered as mediators. In 3 different age groups, the product-of-coefficients method was used to examine age-specific mediator effects on the relationship between SES and FM%-SDS (c = total effects) and their ratio to total effects, adjusted for age, sex, puberty, and nationality. The prevalence of overweight was 6.9%. In all age groups, SES was inversely associated with FM%-SDS as follows: 5–7 years, c1 = –0.11 (95% CI –0.19 to –0.03); 9–11 years, c2 = –0.21 (95% CI –0.27 to –0.14); and 13–16 years, c3 = –0.23 (95% CI –0.28 to –0.17). The relationship between SES and FM%-SDS was fully (5–7 and 9–11 years) and partly (13–16 years) mediated by similar and age-specific mediators, including parental BMI, parental smoking habits, media consumption, physical activity, and shared meals. Overall, these variables resulted in a total mediating effect of 77.8% (5–7 years), 82.4% (9–11 years), and 70.6% (13–16 years). Consistent for both sexes, the relationship between SES and FM%-SDS was therefore mediated by parental weight status, risk-related behavior within families, and children’s and adolescents’ lifestyle factors. Strategies for obesity prevention, which are predominantly targeted at socially disadvantaged groups, should therefore address the family environment and lifestyle factors.

Background: Programming of body composition during intrauterine growth may contribute to the higher risk for cardio-metabolic disease in individuals born small or large for gestational age (SGA, LGA). Compensations of intrauterine growth by catch-up or catch-down postnatal growth may lead to adverse consequences like a thin-fat phenotype. Methods: The impact of (i) birth weight as well as (ii) the interaction between birth weight and catch-up or catch-down growth during the first two years of life on fat free mass index (FFMI) and fat mass index (FMI) in 3204 5-7-year-old children was investigated using Hattori`s body composition chart. Body composition results were compared to appropriate for gestational age birth weight (AGA) with the same BMI. Results: 299 children at age 5-7 years were categorized as SGA, 2583 as AGA and 322 as LGA. When compared to AGA-children, BMI at 5-7-years of age was higher in LGA-children (15.5 kg/m² vs. 16.2 kg/m²; p

Feeding a high-fat diet (HFD) has been shown to alter phenotypic and metabolic parameters in Drosophila melanogaster. However, the impact of fat quantity and quality remains uncertain. We first used butterfat (BF) as an example to investigate the effects of increasing dietary fat content (3–12%) on male and female fruit flies. Although body weight and body composition were not altered by any BF concentration, health parameters, such as lifespan, fecundity and larval development, were negatively affected in a dose-dependent manner. When fruit flies were fed various 12% HFDs (BF, sunflower oil, olive oil, linseed oil, fish oil), their fatty acid profiles shifted according to the dietary fat qualities. Moreover, fat quality was found to determine the effect size of the response to an HFD for traits, such as lifespan, climbing activity, or fertility. Consistently, we also found a highly fat quality-specific transcriptional response to three exemplary HFD qualities with a small overlap of only 30 differentially expressed genes associated with the immune/stress response and fatty acid metabolism. In conclusion, our data indicate that not only the fat content but also the fat quality is a crucial factor in terms of life-history traits when applying an HFD in D. melanogaster.

Foliar diseases are a major threat to worldwide wheat production, especially during the vegetative period in maritime climates. Despite advancements in agronomic practices, infestations by foliar diseases are possible under favourable weather conditions, thus, fungicides are essential for maintaining control. Stage-oriented applications are therefore common in farm practices. The optimization of fungicide use according to biological–epidemiological thresholds reduces the total amount of fungicides used, which is of political interest, especially in the European Union. Therefore, the efficiency and effectivity of the fungicides used to control the six major foliar diseases (Septoria tritici blotch, glume blotch, tans spot, powdery mildew, stripe rust, and leaf rust) were analysed in a long-term study of 26 years in northern Germany under favourable maritime conditions. Of those diseases, Septoria tritici blotch was the most dominant recurring disease, with high severity noted in every year of the study. The threshold-based disease management system was compared to a fungicide untreated control and a healthy-standard fungicide treatment (according to growth stages). The usage of the threshold-based system reduced the disease severities significantly compared to the fungicide untreated control, without any loss of yield compared to the healthy-standard fungicide treatment. Thereby, the use of fungicides was reduced by two thirds compared to the stage-oriented healthy-standard treatment. Thus, the advantages of the threshold-based system were obvious, and this approach will be an important tool for future evaluations of current farm practices.

(1) Land use intensification has led to serious declines in biodiversity, including in forage production systems for dairy cows. Agri-environmental schemes, such as enriching grasslands in floral species, were shown to be an effective tool to promote biodiversity in higher trophic levels. Here, we studied an innovative pasture-based dairy production system with floral-species-enhanced temporary grasslands, with respect to the effect on wild bee abundance and species richness. (2) We studied three grass-clover mixtures with perennial ryegrass and clover species with different levels of plant diversity for flower cover and wild bees. The grass-clover pastures were rotationally stocked with cattle and parts of the pastures were excluded from grazing. Intensively managed conventional permanent grasslands were studied as the common land use type. Wild bees were caught by sweep netting. Wild bee diversity was analysed with a general linear mixed model. For species richness, an incidence-based coverage estimator was calculated. (3) In total, 541 wild bees from 10 species were found. No wild bees were caught on the conventional grasslands. Wild bee abundance and species richness did not differ among the three grass-clover mixtures, but with increasing flower cover of white clover (Trifolium repens), wild bee abundance increased. Except for one solitary wild bee individual, the recorded community exclusively consisted of bumblebees. While generalist species that are commonly found on farmland dominated, rare long-tongued bumblebees made up 10% on the grazed sites of the multispecies mixture and made up 20% on the ungrazed strips of the binary mixture and multispecies mixture. (4) We conclude that multispecies mixtures can provide resources for generalist bumblebee species, especially when compared with conventional grasslands that offer no resources. Considering that the multispecies mixture has been also shown to reduce greenhouse gas emissions and nitrate leaching, while maintaining high forage yields, our findings add to the potential to promote a wide range of ecosystem services. Yet, should their full potential be enfolded, grazing should partially be excluded, and the mixture should be extended by plant species with more open flowers, suitable for solitary wild bees.

Yield increases in forage maize (Zea mays L.) in NW Europe over time are well documented. The driving causes for these, however, remain unclear as there is little information available regarding the role of plant traits triggering this yield progress. Ten different hybrids from the same maturity group, which have typically been cultivated in Northwest Germany from 1970 to recent and are thus representing breeding progress over four decades, were selected for a 2-year field study in northern Germany. Traits that were investigated included leaf area index, leaf architecture, photosynthesis, radiation use efficiency, root mass, root length density, and turnover. Based on a mixed model analysis with these traits as co-variates, parameters related to leaf characteristics, in particular the number and length of leaves, the radiation use efficiency, and the leaf orientation, were identified as most influential on the yield progress (0.13 tons ha-1 year-1). In contrast to our hypothesis, root biomass only increased negligibly in newer hybrids compared to older ones, confirming the ‘functional equilibrium’ theory for high input production systems. Due to an abundance of nutrients and water in such high input systems, there is no incentive for breeders to select for carbon partitioning toward the rooting system. Breeding evidence to increase forage quality were also negligible, with no change in cob starch concentration, forage digestibility, nor NDF content and NDF digestibility. The observed increase in yield over the last four decades is due to a combination of increased temperature sums (~240 GDD within 40 years), and a higher radiation interception and radiation use efficiency. This higher radiation interception was driven by an increased leaf area index, with a higher number of leaves (16 instead of 14 leaves within 40 years) and longer leaves of newer compared to older hybrids. Future selection and adaptation of maize hybrids to changing environmental conditions are likely to be the key for high productivity and quality and for the economic viability of maize growing and expansion in Northern Europe.

Septoria tritici blotch (STB), caused by Zymoseptoria tritici, is one of the most important foliar wheat diseases worldwide. Current control strategies of STB rely mainly on fungicides, whereby triazoles (demethylation inhibitors; DMIs) have been the backbone in the control of Z. tritici in the last decades. However, in recent years a gradual loss of sensitivity of Z. tritici to several active ingredients of the triazole group has been reported in several European wheat-growing areas. Nevertheless, a new triazole fungicide, namely, mefentrifluconazole, has recently become available in disease management of STB, which belongs to a completely new triazole subclass, the so-called isopropanol triazoles. In this study, the trend in sensitivity development of Z. tritici towards older triazoles (tebuconazole, prothioconazole, and propiconazole) and the new isopropanol triazole mefentrifluconazole was determined in microtiter assays using Z. tritici field populations isolated in 1999, 2009, 2014, and 2020 in a high-disease-pressure and high-fungicide-input area in northern Germany in order to investigate whether the loss of sensitivity of Z. tritici to older triazoles also applies to mefentrifluconazole. For the three triazole fungicides tebuconazole, prothioconazole and propiconazole, a significant shift towards decreasing sensitivity of Z. tritici field populations was observed from 1999 to 2020, whereas the efficacy of mefentrifluconazole in reducing the in vitro fungal growth by 50% (EC50) remained unchanged over the investigated period, demonstrating a stable sensitivity of Z. tritici towards mefentrifluconazole. Although older triazoles are suffering from a loss of sensitivity of Z. tritici field populations due to the selection and spread of less triazole sensitive strains within the Z. tritici population, the efficacy of the new triazole mefentrifluconazole with its unique isopropanol unit was not affected by these changes within the Z. tritici population. Thus, the introduction of such new molecular units could also represent an important contribution for older groups of active ingredients, which previously suffered from a loss of sensitivity.

Methane emissions from ruminants are a major contributor to agricultural greenhouse gas emissions. Thus, eight different forage species were combined in binary mixtures with Lolium perenne in increasing proportions, in vitro, to determine their methane reduction potential in ruminants. Species were sampled in two consecutive years where possible. The aims were: a) to determine if mixtures with specific forages, particularly those rich in plant specialized metabolites (PSM), can reduce methane emissions compared to ryegrass monocultures, b) to identify whether there is a linear-dose effect relationship in methane emissions from the legume or herb addition, and c) whether these effects are maintained across sampling years. Results showed that all dicot species studied, including the non-tannin-containing species, reduced methane production. The tannin-rich species, Sanguisorba minor and Lotus pedunculatus, showed the greatest methane reduction potential of up to 33%. Due to concomitant reductions in the forage digestibility, Cichorium intybus yielded the lowest methane emissions per digestible forage unit. Contrary to total gas production, methane production was less predictable, with a tendency for the lowest methane production being obtained with a 67.5% share of the legume or herb partner species. Thus, linear increments in the partner species share did not result in linear changes in methane concentration. The methane reduction potential differed across sampling years, but the species ranking in methane concentration was stable.

Septoria tritici blotch (STB; Zymoseptoria tritici), one of the most important foliar diseases in wheat, is mainly controlled by the intensive use of fungicides during crop growth. Unfortunately, Z. tritici field populations have developed various extents of resistance to different groups of fungicides. Due to the complete resistance to quinone outside inhibitors (QoIs), fungicidal control of STB relies mainly on demethylation inhibitors (DMIs) and succinate dehydrogenase inhibitors (SDHIs) as well as multi-site inhibitors. In this study, temporal changes in the sensitivity of Z. tritici to selected DMIs (tebuconazole, propiconazole, prothioconazole, prochloraz), SDHIs (boscalid, bixafen), and multi-site inhibitors (chlorothalonil, folpet) were determined in microtiter assays using Z. tritici field populations isolated in 1999, 2009, 2014, and 2020 in a high-disease-pressure and high-fungicide-input area in Northern Germany. For the four tested DMI fungicides, a significant shift towards decreasing sensitivity of Z. tritici field populations was observed between 1999 and 2009, whereby concentrations inhibiting fungal growth by 50% (EC50) increased differentially between the four DMIs. Since 2009, EC50 values of tebuconazole, propiconazole, and prochloraz remain stable, whereas for prothioconazole a slightly increased sensitivity shift was found. A shift in sensitivity of Z. tritici was also determined for both tested SDHI fungicides. In contrast to DMIs, EC50 values of boscalid and bixafen increased continuously between 1999 and 2020, but the increasing EC50 values were much smaller compared to those of the four tested DMIs. No changes in sensitivity of Z. tritici were observed for the multi-site inhibitors chlorothalonil and folpet over the last 21 years. The sensitivity adaptation of Z. tritici to both groups of single-site inhibitors (DMIs, SDHIs) mainly used for STB control represents a major challenge for future wheat cultivation.

Methane is a major constituent of greenhouse gas (GHG) emissions from ruminants, and mitigation strategies are needed to alleviate this negative environmental impact while maintaining the environmental and other benefits of grazing systems. Forages containing plant-specialized metabolites (PSM), particularly condensed tannins, may help reduce enteric methane (CH4) emissions. However, information on in vivo CH4 emissions from cows grazing mixtures that contain bioactive herbs is scarce. Accordingly, this study compared a binary mixture of perennial ryegrass (Lolium perenne) and white clover (Trifolium repens) against a diverse mixture of six additional species, including tannin-rich species like birdsfoot trefoil (Lotus corniculatus) and salad burnet (Sanguisorba minor), in a full-grazing dairy system. Enteric CH4 emissions were measured using the SF6 tracer technique. Cows grazing diverse mixtures increased their energy-corrected milk (ECM) yield by 4% (p < 0.001) compared with binary mixtures. However, CH4 emissions per kg ECM were also 11% greater for the diverse mixtures (p < 0.05). The very high feed quality and milk yield from both mixtures explained the low CH4 emissions recorded relative to the milk output. The addition of forbs did not provide additional benefits at these intensities, as they were maintained in low yield shares throughout.

Forage maize is often infected by mycotoxin-producing Fusarium fungi during plant growth, which represent a serious health risk to exposed animals. Deoxynivalenol (DON) and zearalenone (ZEN) are among the most important Fusarium mycotoxins, but little is known about the occurrence of their modified forms in forage maize. To assess the mycotoxin contamination in Northern Germany, 120 natural contaminated forage maize samples of four cultivars from several locations were analysed by liquid chromatography-high resolution mass spectrometry (LC-HRMS) for DON and ZEN and their modified forms deoxynivalenol-3-glucoside (DON3G), the sum of 3- and 15-acetyl-deoxynivalenol (3+15-AcDON), α- and β-zearalenol (α-ZEL, β-ZEL). DON and ZEN occurred with high incidences (100 and 96%) and a wide range of concentrations, reaching levels up to 10,972 and 3910 µg/kg, respectively. Almost half of the samples (46%) exceeded the guidance value in complementary and complete feeding stuffs for ZEN (500 µg/kg), and 9% for DON (5000 µg/kg). The DON related mycotoxins DON3G and 3+15-AcDON were also present in almost all samples (100 and 97%) with amounts of up to 3038 and 2237 µg/kg and a wide range of concentrations. For the ZEN metabolites α- and β-ZEL lower incidences were detected (59 and 32%) with concentrations of up to 423 and 203 µg/kg, respectively. Forage maize samples were contaminated with at least three co-occurring mycotoxins, whereby 95% of all samples contained four or more mycotoxins with DON, DON3G, 3+15-AcDON, and ZEN co-occurring in 93%, together with α-ZEL in 57% of all samples. Positive correlations were established between concentrations of the co-occurring mycotoxins, especially between DON and its modified forms. Averaged over all samples, ratios of DON3G/DON and 3+15-AcDON/DON were similar, 20.2 and 20.5 mol%; cultivar-specific mean ratios ranged from 14.6 to 24.3 mol% and 15.8 to 24.0 mol%, respectively. In total, 40.7 mol% of the measured DON concentration was present in the modified forms DON3G and 3+15-AcDON. The α-ZEL/ZEN ratio was 6.2 mol%, ranging from 5.2 to 8.6 mol% between cultivars. These results demonstrate that modified mycotoxins contribute substantially to the overall mycotoxin contamination in forage maize. To avoid a considerable underestimation, it is necessary to analyse modified mycotoxins in future mycotoxin monitoring programs together with their parent forms.

Documented lesions of slaughtered pigs provide a high-density data-pool that could be valuable for the purpose of animal health monitoring and breeding. However, data quality and structure hamper the application of statistical methods. The present study provides an approach that enables statistical analysis and evaluates the comparability of lesion prevalence among abattoirs. The German Quality and Safety database provided data of recorded lung, pleura, liver, and heart lesions. Filter criteria were used to improve the data structure. Data of n = 8,004,769 animals, recorded in nine abattoirs over a period of 18 months, were analyzed. Lesion prevalences were successfully modeled by applying a generalized linear mixed model. To examine prevalence differences, the coefficient of variation (CV) on a six-monthly basis was calculated, and a grand mean test (GMT) of significance was applied. High variations in estimated prevalence occurred on abattoir, six-monthly and organ basis. The highest variation occurred in the lung (CV = 64.7%), whereas liver lesions showed the lowest variation (CV = 21.8%). The GMT enabled the visualization of these variations between abattoirs, organs and over time. Concerning the assessment of the comparability of prevalences, it provides a promising tool to monitor changes in lesion examination and to address divergent abattoirs.

Fusarium head blight (FHB) is one of the most important diseases of wheat, causing yield losses and mycotoxin contamination of harvested grain. A complex of different toxigenic Fusarium species is responsible for FHB and the composition and predominance of species within the FHB complex are determined by meteorological and agronomic factors. In this study, grain of three different susceptible winter wheat cultivars from seven locations in northern Germany were analysed within a five-year survey from 2013 to 2017 by quantifying DNA amounts of different species within the Fusarium community as well as deoxynivalenol (DON) and zearalenone (ZEA) concentrations. Several Fusarium species co-occur in wheat grain samples in all years and cultivars. F. graminearum was the most prevalent species, followed by F. culmorum, F. avenaceum and F. poae, while F. tricinctum and F. langsethiae played only a subordinate role in the FHB complex in terms of DNA amounts. In all cultivars, a comparable year-specific quantitative occurrence of the six detected species and mycotoxin concentrations were found, but with decreased DNA amounts and mycotoxin concentrations in the more tolerant cultivars, especially in years with higher disease pressure. In all years, similar percentages of DNA amounts of the six species to the total Fusarium DNA amount of all detected species were found between the three cultivars for each species, with F. graminearum being the most dominant species. Differences in DNA amounts and DON and ZEA concentrations between growing seasons depended mainly on moisture factors during flowering of wheat, while high precipitation and relative humidity were the crucial meteorological factors for infection of wheat grain by Fusarium. Highly positive correlations were found between the meteorological variables precipitation and relative humidity and DNA amounts of F. graminearum, DON and ZEA concentrations during flowering, whereas the corresponding correlations were much weaker several days before (heading) and after flowering (early and late milk stage).

The aim of this study was to evaluate the relationship of milk odd- and branched-chain fatty acids (OBCFA) with urinary purine derivates and estimated ruminal microbial crude protein (MCP) synthesis. Forty-four lactating Holstein cows were used in a 4 × 4 Latin square design with 21-day periods comprised of a 13-day adaptation phase to diet followed by an 8-day sampling phase. Differences in estimated MCP yield and milk OBCFA composition were found by feeding total mixed rations containing forage (maize silage, MS; red clover silage, RCS) and concentrates (0.75:0.25) with targeted proportions of RCS to MS of 0.15:0.60, 0.30:0.45, 0.45:0.30, and 0.60:0.15 on a dry matter basis. The MCP was estimated from the total urinary purine derivate (PD) excretion (MCPPD) and intakes of metabolizable energy (MCPME) or digestible organic matter (MCPdOM). The Pearson correlations of individual OBCFA with urinary parameters (uric acid, allantoin, PD and nitrogen) were generally weak (r = −0.37 to 0.55). Yields of individual OBCFA correlated positively with MCPME and MCPdOM (r = 0.21 to 0.55). The prediction of urinary PD concentration was moderate (R2 = 0.64) when including the proportion of iso-C17:0. The prediction of total PD excretion was low (R2 = 0.21) with yields of iso-C15:0, anteiso-C17:0, and iso-C16:0. The prediction of MCPPD was high (R2 = 0.99) when including the iso-C16:0 and cis-9 C17:1 concentrations, while those of MCPME and MCPdOM were low (R2 = 0.37 and 0.36, respectively) when including yields of iso-C15:0, cis-9 C17:1, and iso-C18:0. The correlations and regression analyses demonstrate that the estimated MCP synthesis and urinary PD excretion can be only moderately predicted by yields and concentrations of individual or total OBCFA in cow’s milk. However, milk OBCFA can still be seen as a promising, non-invasive method for predicting rumen function and microbial protein supply in dairy cows because MCP flow was not directly measured in this study but instead indirectly estimated probably comprising considerable deviations of the assumed values from the true ones.

The species Beta vulgaris encompasses wild and cultivated members with a broad range of phenological development. The annual life cycle is commonly found in sea beets (ssp. maritima) from Mediterranean environments which germinate, bolt, and flower within one season under long day conditions. Biennials such as the cultivated sugar beet (B. vulgaris ssp. vulgaris) as well as sea beets from northern latitudes require prolonged exposure to cold temperature over winter to acquire floral competence. Sugar beet is mainly cultivated for sugar production in Europe and is likely to have originated from sea beet. Flowering time strongly affects seed yield and yield potential and is thus a trait of high agronomic relevance. Besides environmental cues, there are complex genetic networks known to impact life cycle switch in flowering plants. In sugar beet, BTC1, BvBBX19, BvFT1, and BvFT2 are major flowering time regulators. In this study, we phenotyped plants from a diversity Beta panel encompassing cultivated and wild species from different geographical origin. Plants were grown under different day length regimes with and without vernalization. Haplotype analysis of BTC1, BvBBX19, BvFT1, and BvFT2 was performed to identify natural diversity of these genes and their impact on flowering. We found that accessions from northern latitudes flowered significantly later than those from southern latitudes. Some plants did not flower at all, indicating a strong impact of latitude of origin on life cycle. Haplotype analysis revealed a high conservation of the CCT-, REC-, BBX-, and PEBP-domains with regard to SNP occurrence. We identified sequence variation which may impact life cycle adaptation in beet. Our data endorse the importance of BTC1 in the domestication process of cultivated beets and contribute to the understanding of distribution and adaption of Beta species to different life cycle regimes in response to different environments. Moreover, our data provide a resource for haplotypes identified for the major floral regulators in beet.

Plant-derived protein sources are the most relevant substitutes for fishmeal in aquafeeds. Nevertheless, the effects of plant based diets on the intestinal microbiome especially of juvenile Rainbow trout (Oncorhynchus mykiss) are yet to be fully investigated. The present study demonstrates, based on 16S rDNA bacterial community profiling, that the intestinal microbiome of juvenile Rainbow trout is strongly affected by dietary plant protein inclusion levels. After first feeding of juveniles with either 0%, 50% or 97% of total dietary protein content derived from plants, statistically significant differences of the bacterial gut community for the three diet-types were detected, both at phylum and order level. The microbiome of juvenile fish consisted mainly of the phyla Proteobacteria, Firmicutes, Bacteroidetes, Fusobacteria and Actinobacteria, and thus fits the salmonid core microbiome suggested in previous studies. Dietary plant proteins significantly enhanced the relative abundance of the orders Lactobacillales, Bacillales and Pseudomonadales. Animal proteins in contrast significantly promoted Bacteroidales, Clostridiales, Vibrionales, Fusobacteriales and Alteromonadales. The overall alpha diversity significantly decreased with increasing plant protein inclusion levels and with age of experimental animals. In order to investigate permanent effects of the first feeding diet-type on the early development of the microbiome, a diet change was included in the study after 54 days, but no such effects could be detected. Instead, the microbiome of juvenile trout fry was highly dependent on the actual diet fed at the time of sampling.