212 results on '"Marinko V Sarunic"'
Search Results
2. Functional Assessment of Cardiac Responses of Adult Zebrafish (Danio rerio) to Acute and Chronic Temperature Change Using High-Resolution Echocardiography.
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Ling Lee, Christine E Genge, Michelle Cua, Xiaoye Sheng, Kaveh Rayani, Mirza F Beg, Marinko V Sarunic, and Glen F Tibbits
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Medicine ,Science - Abstract
The zebrafish (Danio rerio) is an important organism as a model for understanding vertebrate cardiovascular development. However, little is known about adult ZF cardiac function and how contractile function changes to cope with fluctuations in ambient temperature. The goals of this study were to: 1) determine if high resolution echocardiography (HRE) in the presence of reduced cardiodepressant anesthetics could be used to accurately investigate the structural and functional properties of the ZF heart and 2) if the effect of ambient temperature changes both acutely and chronically could be determined non-invasively using HRE in vivo. Heart rate (HR) appears to be the critical factor in modifying cardiac output (CO) with ambient temperature fluctuation as it increases from 78 ± 5.9 bpm at 18°C to 162 ± 9.7 bpm at 28°C regardless of acclimation state (cold acclimated CA- 18°C; warm acclimated WA- 28°C). Stroke volume (SV) is highest when the ambient temperature matches the acclimation temperature, though this difference did not constitute a significant effect (CA 1.17 ± 0.15 μL at 18°C vs 1.06 ± 0.14 μl at 28°C; WA 1.10 ± 0.13 μL at 18°C vs 1.12 ± 0.12 μl at 28°C). The isovolumetric contraction time (IVCT) was significantly shorter in CA fish at 18°C. The CA group showed improved systolic function at 18°C in comparison to the WA group with significant increases in both ejection fraction and fractional shortening and decreases in IVCT. The decreased early peak (E) velocity and early peak velocity / atrial peak velocity (E/A) ratio in the CA group are likely associated with increased reliance on atrial contraction for ventricular filling.
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- 2016
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3. Aortic and Cardiac Structure and Function Using High-Resolution Echocardiography and Optical Coherence Tomography in a Mouse Model of Marfan Syndrome.
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Ling Lee, Jason Z Cui, Michelle Cua, Mitra Esfandiarei, Xiaoye Sheng, Winsey Audrey Chui, Michael Haoying Xu, Marinko V Sarunic, Mirza Faisal Beg, Cornelius van Breemen, George G S Sandor, and Glen F Tibbits
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Medicine ,Science - Abstract
Marfan syndrome (MFS) is an autosomal-dominant disorder of connective tissue caused by mutations in the fibrillin-1 (FBN1) gene. Mortality is often due to aortic dissection and rupture. We investigated the structural and functional properties of the heart and aorta in a [Fbn1C1039G/+] MFS mouse using high-resolution ultrasound (echo) and optical coherence tomography (OCT). Echo was performed on 6- and 12-month old wild type (WT) and MFS mice (n = 8). In vivo pulse wave velocity (PWV), aortic root diameter, ejection fraction, stroke volume, left ventricular (LV) wall thickness, LV mass and mitral valve early and atrial velocities (E/A) ratio were measured by high resolution echocardiography. OCT was performed on 12-month old WT and MFS fixed mouse hearts to measure ventricular volume and mass. The PWV was significantly increased in 6-mo MFS vs. WT (366.6 ± 19.9 vs. 205.2 ± 18.1 cm/s; p = 0.003) and 12-mo MFS vs. WT (459.5 ± 42.3 vs. 205.3 ± 30.3 cm/s; p< 0.0001). PWV increased with age in MFS mice only. We also found a significantly enlarged aortic root and decreased E/A ratio in MFS mice compared with WT for both age groups. The [Fbn1C1039G/+] mouse model of MFS replicates many of the anomalies of Marfan patients including significant aortic dilation, central aortic stiffness, LV systolic and diastolic dysfunction. This is the first demonstration of the direct measurement in vivo of pulse wave velocity non-invasively in the aortic arch of MFS mice, a robust measure of aortic stiffness and a critical clinical parameter for the assessment of pathology in the Marfan syndrome.
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- 2016
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4. Correction: Functional Assessment of Cardiac Responses of Adult Zebrafish (Danio rerio) to Acute and Chronic Temperature Change Using High-Resolution Echocardiography.
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Ling Lee, Christine E Genge, Michelle Cua, Xiaoye Sheng, Kaveh Rayani, Mirza F Beg, Marinko V Sarunic, and Glen F Tibbits
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Medicine ,Science - Published
- 2016
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5. Towards standardising retinal OCT angiography image analysis with open-source toolbox OCTAVA
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Gavrielle R. Untracht, Madeleine S. Durkee, Mei Zhao, Andrew Kwok-Cheung Lam, Bartosz L. Sikorski, Marinko V. Sarunic, Peter E. Andersen, David D. Sampson, Fred K. Chen, and Danuta M. Sampson
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Medicine ,Science - Abstract
Abstract Quantitative assessment of retinal microvasculature in optical coherence tomography angiography (OCTA) images is important for studying, diagnosing, monitoring, and guiding the treatment of ocular and systemic diseases. However, the OCTA user community lacks universal and transparent image analysis tools that can be applied to images from a range of OCTA instruments and provide reliable and consistent microvascular metrics from diverse datasets. We present a retinal extension to the OCTA Vascular Analyser (OCTAVA) that addresses the challenges of providing robust, easy-to-use, and transparent analysis of retinal OCTA images. OCTAVA is a user-friendly, open-source toolbox that can analyse retinal OCTA images from various instruments. The toolbox delivers seven microvascular metrics for the whole image or subregions and six metrics characterising the foveal avascular zone. We validate OCTAVA using images collected by four commercial OCTA instruments demonstrating robust performance across datasets from different instruments acquired at different sites from different study cohorts. We show that OCTAVA delivers values for retinal microvascular metrics comparable to the literature and reduces their variation between studies compared to their commercial equivalents. By making OCTAVA publicly available, we aim to expand standardised research and thereby improve the reproducibility of quantitative analysis of retinal microvascular imaging. Such improvements will help to better identify more reliable and sensitive biomarkers of ocular and systemic diseases.
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- 2024
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6. Label-Free Density Measurements of Radial Peripapillary Capillaries in the Human Retina.
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Paula K Yu, Chandrakumar Balaratnasingam, Jing Xu, William H Morgan, Zaid Mammo, Sherry Han, Paul Mackenzie, Andrew Merkur, Andrew Kirker, David Albiani, Marinko V Sarunic, and Dao-Yi Yu
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Medicine ,Science - Abstract
Radial peripapillary capillaries (RPCs) comprise a unique network of capillary beds within the retinal nerve fibre layer (RNFL) and play a critical role in satisfying the nutritional requirements of retinal ganglion cell (RGC) axons. Understanding the topographical and morphological characteristics of these networks through in vivo techniques may improve our understanding about the role of RPCs in RGC axonal health and disease. This study utilizes a novel, non-invasive and label-free optical imaging technique, speckle variance optical coherence tomography (svOCT), for quantitatively studying RPC networks in the human retina. Six different retinal eccentricities from 16 healthy eyes were imaged using svOCT. The same eccentricities were histologically imaged in 9 healthy donor eyes with a confocal scanning laser microscope. Donor eyes were subject to perfusion-based labeling techniques prior to retinal dissection, flat mounting and visualization with the microscope. Capillary density and diameter measurements from each eccentricity in svOCT and histological images were compared. Data from svOCT images were also analysed to determine if there was a correlation between RNFL thickness and RPC density. The results are as follows: (1) The morphological characteristics of RPC networks on svOCT images are comparable to histological images; (2) With the exception of the nasal peripapillary region, there were no significant differences in RPC density measurements between svOCT and histological images; (3) Capillary diameter measurements were significantly greater in svOCT images compared to histology; (4) There is a positive correlation between RPC density and RNFL thickness. The findings in this study suggest that svOCT is a reliable modality for analyzing RPC networks in the human retina. It may therefore be a valuable tool for aiding our understanding about vasculogenic mechanisms that are involved in RGC axonopathies. Further work is required to explore the reason for some of the quantitative differences between svOCT and histology.
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- 2015
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7. Pilot study of optical coherence tomography angiography-derived microvascular metrics in hands and feet of healthy and diabetic people
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Gavrielle R. Untracht, Nikolaos Dikaios, Abdullah K. Durrani, Mariam Bapir, Marinko V. Sarunic, David D. Sampson, Christian Heiss, and Danuta M. Sampson
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Medicine ,Science - Abstract
Abstract Optical coherence tomography angiography (OCTA) is a non-invasive, high-resolution imaging modality with growing application in dermatology and microvascular assessment. Accepted reference values for OCTA-derived microvascular parameters in skin do not yet exist but need to be established to drive OCTA into the clinic. In this pilot study, we assess a range of OCTA microvascular metrics at rest and after post-occlusive reactive hyperaemia (PORH) in the hands and feet of 52 healthy people and 11 people with well-controlled type 2 diabetes mellitus (T2DM). We calculate each metric, measure test–retest repeatability, and evaluate correlation with demographic risk factors. Our study delivers extremity-specific, age-dependent reference values and coefficients of repeatability of nine microvascular metrics at baseline and at the maximum of PORH. Significant differences are not seen for age-dependent microvascular metrics in hand, but they are present for several metrics in the foot. Significant differences are observed between hand and foot, both at baseline and maximum PORH, for most of the microvascular metrics with generally higher values in the hand. Despite a large variability over a range of individuals, as is expected based on heterogeneous ageing phenotypes of the population, the test–retest repeatability is 3.5% to 18% of the mean value for all metrics, which highlights the opportunities for OCTA-based studies in larger cohorts, for longitudinal monitoring, and for assessing the efficacy of interventions. Additionally, branchpoint density in the hand and foot and changes in vessel diameter in response to PORH stood out as good discriminators between healthy and T2DM groups, which indicates their potential value as biomarkers. This study, building on our previous work, represents a further step towards standardised OCTA in clinical practice and research.
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- 2023
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8. Spectral Bandwidth Recovery of Optical Coherence Tomography Images using Deep Learning.
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Timothy T. L. Yu, Da Ma, Jayden Cole, MyeongJin Ju, Mirza Faisal Beg, and Marinko V. Sarunic
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- 2021
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9. Reverse translation of artificial intelligence in glaucoma: Connecting basic science with clinical applications
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Da Ma, Louis R. Pasquale, Michaël J. A. Girard, Christopher K. S. Leung, Yali Jia, Marinko V. Sarunic, Rebecca M. Sappington, and Kevin C. Chan
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deep learning ,artificial intelligence ,reverse translation ,transfer learning ,glaucoma ,optical coherence tomography ,Medicine - Abstract
Artificial intelligence (AI) has been approved for biomedical research in diverse areas from bedside clinical studies to benchtop basic scientific research. For ophthalmic research, in particular glaucoma, AI applications are rapidly growing for potential clinical translation given the vast data available and the introduction of federated learning. Conversely, AI for basic science remains limited despite its useful power in providing mechanistic insight. In this perspective, we discuss recent progress, opportunities, and challenges in the application of AI in glaucoma for scientific discoveries. Specifically, we focus on the research paradigm of reverse translation, in which clinical data are first used for patient-centered hypothesis generation followed by transitioning into basic science studies for hypothesis validation. We elaborate on several distinctive areas of research opportunities for reverse translation of AI in glaucoma including disease risk and progression prediction, pathology characterization, and sub-phenotype identification. We conclude with current challenges and future opportunities for AI research in basic science for glaucoma such as inter-species diversity, AI model generalizability and explainability, as well as AI applications using advanced ocular imaging and genomic data.
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- 2023
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10. Cascade Dual-branch Deep Neural Networks for Retinal Layer and fluid Segmentation of Optical Coherence Tomography Incorporating Relative Positional Map.
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Da Ma, Donghuan Lu, Morgan Heisler, Setareh Dabiri, Sieun Lee, Gavin Weiguang Ding, Marinko V. Sarunic, and Mirza Faisal Beg
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- 2020
11. Long-term assessment of internal limiting membrane peeling for full-thickness macular hole using en face adaptive optics and conventional optical coherence tomography
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David Sarraf, Nathan Schuck, Marinko V. Sarunic, Eduardo V. Navajas, and Arman Athwal
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Plexus ,medicine.medical_specialty ,Retina ,genetic structures ,medicine.diagnostic_test ,business.industry ,medicine.medical_treatment ,Vitrectomy ,Retinal ,General Medicine ,medicine.disease ,eye diseases ,Ophthalmology ,chemistry.chemical_compound ,medicine.anatomical_structure ,Optical coherence tomography ,chemistry ,Full-thickness macular hole ,medicine ,sense organs ,Tamponade ,business ,Macular hole - Abstract
Objective To evaluate the long-term structural and microvascular retinal effects of internal limiting membrane peeling for full-thickness macular hole (FTMH) using en face adaptive optics optical coherence tomography (AO-OCT), conventional OCT, and OCT angiography (OCTA). Design Interventional case series. Participants Patients with FTMH treated with vitrectomy, internal limiting membrane peeling, and gas tamponade. Methods Eleven eyes with FTMH that had at least 12 months of postoperative follow-up were enrolled in the study. En face AO-OCT was used to image the superficial retina in the peeled and nonpeeled areas. En face structural OCT was performed to image the inner retinal dimples (IRDs), macular thickness, and retinal nerve fibre layer (RNFL). En face OCTA was used to examine the integrity of the peripapillary nerve fibre layer (NFL) plexus. Results AO-OCT showed RFNL wrapping around the IRDs, and no obvious peripapillary NFL plexus dropout was seen with OCTA. Scattered hyper-reflective dots were observed on the surface of the peeled retina in all patients imaged with AO-OCT. No significant differences were found in IRD number (91.5 ± 24.4 versus 77.2 ± 14.7; P = 2.07), IRD proportionate area (8.36 ± 3.34 versus 7.53 ± 2.60; P = 0.159), or macular thickness between the 6- and 12-month (or greater) postoperative visits. Conclusion IRDs do not to progress beyond 6 months postoperatively, and no obvious damage to RFNL and peripapillary NFL plexus was detected. Hyper-reflective dots on the surface of the retina suggestive of possible Muller cell reactive gliosis were identified with AO-OCT.
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- 2023
12. Multiple instance learning for age-related macular degeneration diagnosis in optical coherence tomography images.
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Donghuan Lu, Gavin Weiguang Ding, Andrew B. Merkur, Marinko V. Sarunic, and Mirza Faisal Beg
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- 2017
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13. Effects of Myopia and Glaucoma on the Neural Canal and Lamina Cribrosa Using Optical Coherence Tomography
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Sieun, Lee, Morgan, Heisler, Dhanashree, Ratra, Vineet, Ratra, Paul J, Mackenzie, Marinko V, Sarunic, and Mirza Faisal, Beg
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Ophthalmology - Abstract
Glaucoma was associated with axial bowing and rotation of Bruchs membrane opening (BMO) and anterior laminar insertion (ALI), skewed neural canal, and deeper anterior lamina cribrosa surface (ALCS). Longer axial length was associated with wider, longer, and more skewed neural canal and flatter ALCS.Investigate the effects of myopia and glaucoma in the prelaminar neural canal and anterior lamina cribrosa using 1060-nm swept-source optical coherence tomography.19 control (38 eyes) and 38 glaucomatous subjects (63 eyes).Participants were imaged with swept-source optical coherence tomography, and the images were analyzed for the BMO and ALI dimensions, prelaminar neural canal dimensions, and ALCS depth.Glaucomatous eyes had more bowed and nasally rotated BMO and ALI, more horizontally skewed prelaminar neural canal, and deeper ALCS than the control eyes. Increased axial length was associated with a wider, longer, and more horizontally skewed neural canal and a decrease in the ALCS depth and curvature.Our findings suggest that glaucomatous posterior bowing or cupping of lamina cribrosa can be significantly confounded by the myopic expansion of the neural canal. This may be related to higher glaucoma risk associated with myopia from decreased compliance and increased susceptibility to IOP-related damage of LC being pulled taut.
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- 2022
14. Sensorless adaptive optics multi-modal functional small animal imaging for age-related macular degeneration mouse model
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Jun Song, Yusi Miao, Destiny Hsu, Joanne A. Matsubara, Marinko V. Sarunic, and Myeong Jin Ju
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- 2023
15. Adaptive optics scanning laser ophthalmoscopy and optical coherence tomography (AO-SLO-OCT) system for in vivo mouse retina imaging
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Pengfei Zhang, Daniel J. Wahl, Jacopo Mocci, Eric B. Miller, Stefano Bonora, Marinko V. Sarunic, and Robert J. Zawadzki
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Neurosciences ,Biomedical Imaging ,Bioengineering ,Optical Physics ,Materials Engineering ,Eye ,Eye Disease and Disorders of Vision ,Atomic and Molecular Physics, and Optics ,Article ,Biotechnology - Abstract
Optical coherence tomography (OCT) and scanning laser ophthalmoscopy (SLO) are imaging technologies invented in the 1980s that have revolutionized the field of in vivo retinal diagnostics and are now commonly used in ophthalmology clinics as well as in vision science research. Adaptive optics (AO) technology enables high-fidelity correction of ocular aberrations, resulting in improved resolution and sensitivity for both SLO and OCT systems. The potential of gathering multi-modal cellular-resolution information in a single instrument is of great interest to the ophthalmic imaging community. Although similar instruments have been developed for imaging the human retina, developing such a system for mice will benefit basic science research and should help with further dissemination of AO technology. Here, we present our work integrating OCT into an existing mouse retinal AO-SLO system, resulting in a multi-modal AO-enhanced imaging system of the living mouse eye. The new system allows either independent or simultaneous data acquisition of AO-SLO and AO-OCT, depending on the requirements of specific scientific experiments. The system allows a data acquisition speed of 200 kHz A-scans/pixel rate for OCT and SLO, respectively. It offers ∼6 µm axial resolution for AO-OCT and a ∼1 µm lateral resolution for AO-SLO-OCT imaging.
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- 2022
16. On identification of sinoatrial node in zebrafish heart based on functional time series from optical mapping.
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Gavin Weiguang Ding, Eric Lin, Amanda Ribeiro, Marinko V. Sarunic, Glen F. Tibbits, and Mirza Faisal Beg
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- 2013
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17. Automatic detection of subretinal fluid and sub-retinal pigment epithelium fluid in optical coherence tomography images.
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Gavin Weiguang Ding, Mei Young, Serge Bourgault, Sieun Lee, David A. Albiani, Andrew W. Kirker, Farzin Forooghian, Marinko V. Sarunic, Andrew B. Merkur, and Mirza Faisal Beg
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- 2013
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18. INVESTIGATING MICROANGIOPATHY USING SWEPT-SOURCE OPTICAL COHERENCE TOMOGRAPHY ANGIOGRAPHY IN PATIENTS WITH SUSAC SYNDROME
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Jillian Chan, Robert Carruthers, Claire A. Sheldon, Eduardo V. Navajas, Marinko V. Sarunic, Magdalena A. Wirth, Julian Lo, and Haaris M. Khan
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Adult ,Male ,Noninvasive imaging ,Susac Syndrome ,genetic structures ,Retinal Artery Occlusion ,Computed Tomography Angiography ,chemistry.chemical_compound ,Retinal Diseases ,medicine ,Humans ,In patient ,Fluorescein Angiography ,Aged ,business.industry ,Microangiopathy ,Retinal Vessels ,Retinal ,General Medicine ,Optical coherence tomography angiography ,Middle Aged ,medicine.disease ,Skeleton (computer programming) ,Ophthalmology ,chemistry ,Female ,sense organs ,business ,Nuclear medicine ,Tomography, Optical Coherence - Abstract
PURPOSE To determine whether optical coherence tomography angiography is of diagnostic utility for Susac syndrome (SuS) by quantifying microvascular retinal changes. METHODS We enrolled 18 eyes of 9 healthy controls and 18 eyes of 9 patients with chronic SuS (12 had previous branch retinal artery occlusions and 6 were clinically unaffected). Images of the fovea were taken using an optical coherence tomography angiography system. Analysis included vessel density, fractal dimension, vessel diameter, and measurements of the foveal avascular zone (area, eccentricity, acircularity index, and axis ratio) in deep and superficial retinal layers. RESULTS Skeleton density and inner ring vessel density were significantly lower in patients with SuS (skeleton density: Susac 0.11 ± 0.01 vs. controls 0.12 ± 0.01, P = 0.027. VD: SuS 0.39 ± 0.04 vs. controls 0.42 ± 0.02, P = 0.041). Eccentricity and axis ratio were significantly higher in patients with SuS (EC: Susac 0.61 ± 0.11, controls 0.51 ± 0.10, P = 0.003; axis ratio: Susac 1.57 ± 0.28, controls 1.39 ± 0.11, P = 0.005). SuS eyes (affected and unaffected) had poorer outcomes of the remaining vascular parameters compared with controls (P > 0.05). CONCLUSION Optical coherence tomography angiography identified chronic microvascular changes in the eyes of patients with chronic SuS. Even clinically unaffected SuS eyes showed poorer vascular parameters. Although further research is needed, this noninvasive imaging modality seems to have the potential to serve as a valuable additive diagnostic tool.
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- 2021
19. Segmentation-guided domain adaptation and data harmonization of multi-device retinal optical coherence tomography using cycle-consistent generative adversarial networks
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Shuo Chen, Da Ma, Sieun Lee, Timothy T.L. Yu, Gavin Xu, Donghuan Lu, Karteek Popuri, Myeong Jin Ju, Marinko V. Sarunic, and Mirza Faisal Beg
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FOS: Computer and information sciences ,Computer Science - Machine Learning ,Computer Vision and Pattern Recognition (cs.CV) ,Image and Video Processing (eess.IV) ,FOS: Electrical engineering, electronic engineering, information engineering ,Computer Science - Computer Vision and Pattern Recognition ,Health Informatics ,Electrical Engineering and Systems Science - Image and Video Processing ,Machine Learning (cs.LG) ,Computer Science Applications - Abstract
Optical Coherence Tomography(OCT) is a non-invasive technique capturing cross-sectional area of the retina in micro-meter resolutions. It has been widely used as a auxiliary imaging reference to detect eye-related pathology and predict longitudinal progression of the disease characteristics. Retina layer segmentation is one of the crucial feature extraction techniques, where the variations of retinal layer thicknesses and the retinal layer deformation due to the presence of the fluid are highly correlated with multiple epidemic eye diseases like Diabetic Retinopathy(DR) and Age-related Macular Degeneration (AMD). However, these images are acquired from different devices, which have different intensity distribution, or in other words, belong to different imaging domains. This paper proposes a segmentation-guided domain-adaptation method to adapt images from multiple devices into single image domain, where the state-of-art pre-trained segmentation model is available. It avoids the time consumption of manual labelling for the upcoming new dataset and the re-training of the existing network. The semantic consistency and global feature consistency of the network will minimize the hallucination effect that many researchers reported regarding Cycle-Consistent Generative Adversarial Networks(CycleGAN) architecture., 16 pages, 10 figures
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- 2023
20. Therapeutic Neuroprotection by an Engineered Neurotrophin that Selectively Activates Tropomyosin Receptor Kinase (Trk) Family Neurotrophin Receptors but Not the p75 Neurotrophin Receptor
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Sairey Siegel, Stephanie Szobota, Alan C. Foster, Alba Galan, Marinko V. Sarunic, Fouad Brahimi, and H. Uri Saragovi
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Male ,animal structures ,Nerve Tissue Proteins ,Neurotrophin-3 ,Tropomyosin receptor kinase B ,Tropomyosin receptor kinase A ,Protein Engineering ,Tropomyosin receptor kinase C ,Mice ,Diabetic Neuropathies ,Neurotrophic factors ,Animals ,Humans ,Low-affinity nerve growth factor receptor ,Receptors, Growth Factor ,Nerve Growth Factors ,Receptor, trkA ,Pharmacology ,Dose-Response Relationship, Drug ,biology ,Chemistry ,Axotomy ,Optic Nerve ,Neuroprotection ,Cell biology ,Mice, Inbred C57BL ,HEK293 Cells ,nervous system ,Trk receptor ,embryonic structures ,NIH 3T3 Cells ,biology.protein ,Molecular Medicine ,Neurotrophin - Abstract
The neurotrophin growth factors bind and activate two types of cell surface receptors: the tropomyosin receptor kinase (Trk) family and p75. TrkA, TrkB, and TrkC are bound preferentially by nerve growth factor, brain-derived neurotrophic factor, and neurotrophin 3 (NT3), respectively, to activate neuroprotective signals. The p75 receptors are activated by all neurotrophins, and paradoxically in neurodegenerative disease p75 is upregulated and mediates neurotoxic signals. To test neuroprotection strategies, we engineered NT3 to broadly activate Trk receptors (mutant D) or to reduce p75 binding (mutant RK). We also combined these features in a molecule that activates TrkA, TrkB, and TrkC but has reduced p75 binding (mutant DRK). In neurodegenerative disease mouse models in vivo, the DRK protein is a superior therapeutic agent compared with mutant D, mutant RK, and wild-type neurotrophins and protects a broader range of stressed neurons. This work rationalizes a therapeutic strategy based on the biology of each type of receptor, avoiding activation of p75 toxicity while broadly activating neuroprotection in stressed neuronal populations expressing different Trk receptors. SIGNIFICANCE STATEMENT The neurotrophins nerve growth factor, brain-derived neurotrophic factor, and neurotrophin 3 each can activate a tropomyosin receptor kinase (Trk) A, TrkB, or TrkC receptor, respectively, and all can activate a p75 receptor. Trks and p75 mediate opposite signals. We report the engineering of a protein that activates all Trks, combined with low p75 binding, as an effective therapeutic agent in vivo.
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- 2021
21. Progress on multimodal retinal Imaging via OCT multi-volume averaging and two photon excited fluorescence
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William Newberry, Laura Vargas, and Marinko V. Sarunic
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- 2022
22. Robust multi-volume 3D registration of optical coherence tomography (OCT) volumes
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Seyedeh Mahsa Siadatifini, Yusi Miao, Arman Athwal, Da Ma, Mirza Faisal Beg, Marinko V. Sarunic, and Myeong Jin Ju
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- 2022
23. Image enhancement for optical coherence tomography with super-resolution generative adversarial networks (SRGAN)
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Timothy T. Yu, Da Ma, Jayden Cole, Myeong Jin Ju, Mirza Faisal Beg, and Marinko V. Sarunic
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- 2022
24. EN FACE OPTICAL COHERENCE TOMOGRAPHY AND OPTICAL COHERENCE TOMOGRAPHY ANGIOGRAPHY OF INNER RETINAL DIMPLES AFTER INTERNAL LIMITING MEMBRANE PEELING FOR FULL-THICKNESS MACULAR HOLES
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Handan Akil, Nathan Schuck, Gavin Docherty, Marinko V. Sarunic, Andrea Govetto, David Sarraf, Morgan Heisler, and Eduardo V. Navajas
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Male ,Retinal Ganglion Cells ,0301 basic medicine ,Pars plana ,medicine.medical_specialty ,Visual acuity ,genetic structures ,Fundus Oculi ,medicine.medical_treatment ,Visual Acuity ,Nerve fiber layer ,Vitrectomy ,Basement Membrane ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Optical coherence tomography ,Ophthalmology ,medicine ,Humans ,Macula Lutea ,Fluorescein Angiography ,Aged ,Retrospective Studies ,medicine.diagnostic_test ,business.industry ,Retinal ,General Medicine ,Retinal Perforations ,eye diseases ,030104 developmental biology ,medicine.anatomical_structure ,chemistry ,030221 ophthalmology & optometry ,Female ,sense organs ,Tomography ,Tamponade ,medicine.symptom ,business ,Tomography, Optical Coherence ,Follow-Up Studies - Abstract
Purpose To quantitatively and qualitatively evaluate the microvascular and structural abnormalities associated with inner retinal dimpling after internal limiting membrane peeling for full-thickness macular holes using sequential en face optical coherence tomography (OCT) and OCT angiography. Methods Thirteen eyes of 13 patients with idiopathic full-thickness macular holes were enrolled in the study. Patients were treated with pars plana vitrectomy, internal limiting membrane peeling, and gas tamponade. Subjects were evaluated preoperatively and at postoperative Months 1, 3, and 6. At each visit, patients underwent a comprehensive ophthalmologic examination, en face OCT and OCT angiography. The morphology and number and proportionate area of inner retinal dimples were analyzed. Vessel density of the superficial vascular complex at all visits was also measured. Results Inner retinal dimples were identified 1 month after surgery in all cases. The number and proportionate area of inner retinal dimples significantly increased over the follow-up period (P = 0.05). Preoperative vessel density of the superficial vascular complex was 17.9 ± 1.9 and did not change significantly over the follow-up period (P = 0.15). Conclusion Inner retinal dimples are identified with en face OCT as early as the first month after internal limiting membrane peeling for idiopathic full-thickness macular holes and progressively increase in number and proportionate area in the subsequent 3 to 6 months after surgery. This may be the result of progressive deturgescence of the nerve fiber layer in the postoperative period.
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- 2020
25. Progress on multimodal retinal imaging via OCT and two photon excited fluorescence
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William B. Newberry and Marinko V. Sarunic
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- 2021
26. Effect of Optical Coherence Tomography Acquisition Sampling Rate Towards Diabetic Retinopathy Severity Classification
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Mirza Faisal Beg, Julian Lo, Marinko V. Sarunic, Da Ma, Tl. Yu Timothy, and Myeong Jin Ju
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medicine.medical_specialty ,genetic structures ,medicine.diagnostic_test ,business.industry ,Diabetic retinopathy ,Optical coherence tomography angiography ,medicine.disease ,eye diseases ,Acquisition rate ,Optical coherence tomography ,Sampling (signal processing) ,Ophthalmology ,Angiography ,Medicine ,sense organs ,business ,Retinopathy - Abstract
Optical coherence tomography angiography (OCT-A) may help in the diagnosis of diabetic retinopathy (DR). The OCT-A field-of-view and the volume acquisition rate are limited by the number of samples. We explore the effect of reduced lateral sampling on DR classification with Deep Learning. © 2021 The Authors.
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- 2021
27. Progress on Bimodal Adaptive Optics OCT and Two-Photon Imaging
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William Newberry, Laura Vargas, and Marinko V. Sarunic
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Physics ,Retina ,genetic structures ,medicine.diagnostic_test ,business.industry ,Fluorescence ,eye diseases ,medicine.anatomical_structure ,Optics ,Optical coherence tomography ,Two-photon excitation microscopy ,medicine ,Retinal imaging ,sense organs ,Imaging technique ,Photonics ,Adaptive optics ,business - Abstract
We are investigating Two Photon Excited Fluorescence (TPEF) as a non-invasive imaging technique for retinal imaging due to its axial sectioning ability. We combined TPEF with Optical Coherence Tomography (OCT) and Sensorless Adaptive Optics (SAO) to obtain co-registered multi-volume averaged images. © 2021 The Authors.
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- 2021
28. Effects of myopia and glaucoma in the prelaminar neural canal and anterior lamina cribrosa using 1060-nm swept-source optical coherence tomography
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Dhanashree Ratra, Marinko V. Sarunic, Mirza Faisal Beg, Morgan Heisler, Sieun Lee, Vineet Ratra, and Paul J. Mackenzie
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medicine.medical_specialty ,Intraocular pressure ,genetic structures ,medicine.diagnostic_test ,business.industry ,Glaucoma ,medicine.disease ,eye diseases ,Visual field ,Optic neuropathy ,medicine.anatomical_structure ,Optical coherence tomography ,Ophthalmology ,Optic nerve ,Medicine ,sense organs ,Neural Canal ,business ,Optic disc - Abstract
PurposeInvestigate the effects of myopia and glaucoma in the prelaminar neural canal and anterior lamina cribrosa using 1060-nm swept-source optical coherence tomographyDesignRetrospective, cross-sectional studyMethodsSettingClinical practicePatient or study population19 controls (38 eyes); 38 glaucomatous subjects (63 eyes). Inclusion criteria for glaucomatous subjects: i) optic disc neural rim loss; ii) peripapillary nerve fibre layer (NFL) loss on spectral domain optical coherence tomography (SD-OCT); iii) glaucomatous visual field defect with an abnormal pattern standard deviation (PIntervention or observation proceduresSwept-source optical coherence tomographyMain Outcome Measure(s)Bruchs membrane opening (BMO) and anterior laminar insertion (ALI) dimension, prelaminar neural canal dimension, anterior lamina cribrosa surface (ALCS) depthResultsGlaucomatous eyes had more bowed and nasally rotated BMO and ALI, more horizontally skewed prelaminar neural canal, and deeper ALCS than the control eyes. Increased axial length was associated with a wider, longer, and more horizontally skewed neural canal, and decrease in the ALCS depth and curvature.ConclusionOur findings suggest that glaucomatous posterior bowing or cupping of lamina cribrosa can be significantly confounded by the myopic expansion of the neural canal. This may be related to higher glaucoma risk associated with myopia from decreased compliance and increased susceptibility to IOP-related damage of LC being pulled taut.
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- 2021
29. Phase-corrected buffer averaging for enhanced OCT angiography using FDML laser
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Da Ma, Jun Song, Yifan Jian, Marinko V. Sarunic, Mirza Faisal Beg, Yusi Miao, Mahsa Siadati, and Myeong Jin Ju
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Materials science ,Image quality ,media_common.quotation_subject ,Phase (waves) ,Image registration ,01 natural sciences ,Retina ,law.invention ,010309 optics ,03 medical and health sciences ,0302 clinical medicine ,Optics ,Optical coherence tomography ,law ,0103 physical sciences ,medicine ,Contrast (vision) ,Adaptive optics ,media_common ,medicine.diagnostic_test ,business.industry ,Lasers ,Angiography ,Laser ,Atomic and Molecular Physics, and Optics ,030221 ophthalmology & optometry ,business ,Ultrashort pulse ,Tomography, Optical Coherence - Abstract
Megahertz-rate optical coherence tomography angiography (OCTA) is highly anticipated as an ultrafast imaging tool in clinical settings. However, shot-noise-limited sensitivity is inevitably reduced in high-speed imaging systems. In this Letter, we present a coherent buffer averaging technique for use with a Fourier-domain mode-locked (FDML) laser to improve OCTA contrast at 1060 nm MHz-rate retinal imaging. Full characterization of spectral variations among the FDML buffers and a numerical correction method are also presented, with the results demonstrating a 10-fold increase in the phase alignment among buffers. Coherent buffer averaging provided better OCTA contrast than the conventional multi-frame averaging approach with a faster acquisition time.
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- 2021
30. Quantitative Optical Coherence Tomography Angiography in Patients with Moyamoya Vasculopathy: A Pilot Study
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Haaris M. Khan, Julian Lo, Samuel Yip, Peter Gooderham, Marinko V. Sarunic, Claire A. Sheldon, and Magdalena A. Wirth
- Subjects
medicine.medical_specialty ,Retina ,business.industry ,Retinal ,Optical coherence tomography angiography ,Original Articles ,medicine.disease ,Neuro-ophthalmology ,Ophthalmology ,Stenosis ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,medicine ,In patient ,sense organs ,Neurology (clinical) ,Radiology ,Retinal pathology ,business ,Subclinical infection - Abstract
Moyamoya (MM) disease is a chronic cerebrovascular disease that can lead to progressive stenosis of the terminal portions of the internal carotid arteries and their proximal branches. We sought to investigate and quantify retinal vascular changes in patients with MM vasculopathy (MMV) using optical coherence tomography angiography (OCTA) compared to healthy controls. Our findings reveal retinal microvascular changes in patients with MMV and highlights the potential of OCTA imaging for the detection of subclinical retinal pathology.
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- 2021
31. Effect of optical coherence tomography and angiography sampling rate towards diabetic retinopathy severity classification
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Marinko V. Sarunic, Da Ma, Myeong Jin Ju, Julian Lo, Timothy T. Yu, and Mirza Faisal Beg
- Subjects
medicine.medical_specialty ,genetic structures ,Image quality ,01 natural sciences ,010309 optics ,03 medical and health sciences ,0302 clinical medicine ,Oct angiography ,Optical coherence tomography ,Ophthalmology ,0103 physical sciences ,medicine ,medicine.diagnostic_test ,business.industry ,Significant difference ,Diabetic retinopathy ,medicine.disease ,eye diseases ,Atomic and Molecular Physics, and Optics ,Angiography ,030221 ophthalmology & optometry ,Deep neural networks ,Acquisition time ,sense organs ,business ,Biotechnology - Abstract
Optical coherence tomography (OCT) and OCT angiography (OCT-A) may benefit the screening of diabetic retinopathy (DR). This study investigated the effect of laterally subsampling OCT/OCT-A en face scans by up to a factor of 8 when using deep neural networks for automated referable DR classification. There was no significant difference in the classification performance across all evaluation metrics when subsampling up to a factor of 3, and only minimal differences up to a factor of 8. Our findings suggest that OCT/OCT-A can reduce the number of samples (and hence the acquisition time) for a volume for a given field of view on the retina that is acquired for rDR classification.
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- 2021
32. Longitudinal Analysis of Bruch Membrane Opening Morphometry in Myopic Glaucoma
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Marinko V. Sarunic, Paul J. Mackenzie, Mahadev Bhalla, Morgan Heisler, Sieun Lee, Mirza Faisal Beg, and Sherry X. Han
- Subjects
Adult ,Male ,Intraocular pressure ,medicine.medical_specialty ,genetic structures ,Glaucoma ,Pilot Projects ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Optical coherence tomography ,Ophthalmology ,Myopia ,Humans ,Medicine ,Intraocular Pressure ,Aged ,medicine.diagnostic_test ,business.industry ,Follow up studies ,Axial length ,Middle Aged ,medicine.disease ,eye diseases ,Axial Length, Eye ,030221 ophthalmology & optometry ,Visual Field Tests ,Female ,Ocular Hypertension ,Bruch Membrane ,sense organs ,Visual Fields ,business ,Tomography, Optical Coherence ,030217 neurology & neurosurgery ,Follow-Up Studies - Abstract
PReCIS:: The Bruch membrane opening (BMO) was posteriorly bowed and the degree of nonplanarity increased in stable and progressive glaucoma subjects. BMO became more posterior relative to the Bruch membrane (BM) in control and both stable and progressive glaucoma subjects. Purpose To investigate longitudinal changes in morphologic characteristics of the BMO in control and glaucomatous subjects. Materials and methods A total of 53 myopic eyes (17 control, 6 suspect, 20 stable glaucoma, and 10 progressing glaucoma) were followed for an average of 4.2±1.4 years and imaged at the baseline and 2 follow-up appointments using a 1060 nm swept-source optical coherence tomography system. BM and BMO were segmented, and 4 morphometric BMO parameters (area, ellipse ratio, nonplanarity, and depth) were measured. Results There were no significant changes in BMO area or ellipse ratio for all groups. BMO nonplanarity was shown to increase in the glaucoma groups. BMO depth relative to BM increased in all groups except the suspects (control: 8.1 µm/y, P=0.0001; stable glaucoma: 3.5 µm/y, P=0.0001; progressing glaucoma: 14.0 µm/y, P=0.0026). In linear mixed-model analysis, axial length was positively associated with BMO area in all groups except for progressing glaucoma, and with BMO nonplanarity in stable glaucoma. It was not a significant factor to the slopes of the BMO parameters in the ANCOVA analysis of slopes. Conclusions Longitudinally, BMO increased in nonplanarity in the glaucoma eyes, and its axial position relative to BM became more posterior in both control and glaucoma eyes.
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- 2019
33. RETOUCH: The Retinal OCT Fluid Detection and Segmentation Benchmark and Challenge
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Karthik Gopinath, Kiwan Jeon, Donghuan Lu, Dara D. Koozekanani, Clara I. Sánchez, Ulas Bagci, Alireza Bab-Hadiashar, Qiang Chen, Bianca S. Gerendas, Stefanos Apostolopoulos, Carlos Ciller, Abdolreza Rashno, Saad Shaikh, Ursula Schmidt-Erfurth, Mirza Faisal Beg, Hrvoje Bogunovic, Sophie Klimscha, Hyoung Suk Park, Keshab K. Parhi, Sung Ho Kang, Amirali K. Gostar, Zexuan Ji, Freerk G. Venhuizen, Jayanthi Sivaswamy, Caroline C W Klaver, Loza Bekalo, Ruwan Tennakoon, Shivin Yadav, Sebastian M Waldstein, Sandro De Zanet, Marinko V. Sarunic, Dustin Morley, and Epidemiology
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Databases, Factual ,Computer science ,Retina ,030218 nuclear medicine & medical imaging ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Retinal Diseases ,Optical coherence tomography ,Image Interpretation, Computer-Assisted ,Medical imaging ,medicine ,Humans ,Computer vision ,Segmentation ,Electrical and Electronic Engineering ,Radiological and Ultrasound Technology ,Contextual image classification ,medicine.diagnostic_test ,business.industry ,Retinal ,Image segmentation ,Computer Science Applications ,medicine.anatomical_structure ,chemistry ,Artificial intelligence ,Tomography ,business ,Algorithms ,Tomography, Optical Coherence ,Software - Abstract
Retinal swelling due to the accumulation of fluid is associated with the most vision-threatening retinal diseases. Optical coherence tomography (OCT) is the current standard of care in assessing the presence and quantity of retinal fluid and image-guided treatment management. Deep learning methods have made their impact across medical imaging, and many retinal OCT analysis methods have been proposed. However, it is currently not clear how successful they are in interpreting the retinal fluid on OCT, which is due to the lack of standardized benchmarks. To address this, we organized a challenge RETOUCH in conjunction with MICCAI 2017, with eight teams participating. The challenge consisted of two tasks: fluid detection and fluid segmentation. It featured for the first time: all three retinal fluid types, with annotated images provided by two clinical centers, which were acquired with the three most common OCT device vendors from patients with two different retinal diseases. The analysis revealed that in the detection task, the performance on the automated fluid detection was within the inter-grader variability. However, in the segmentation task, fusing the automated methods produced segmentations that were superior to all individual methods, indicating the need for further improvements in the segmentation performance.
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- 2019
34. Retinal capillary perfusion: Spatial and temporal heterogeneity
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Chandrakumar Balaratnasingam, Stephen J. Cringle, Dong An, Er-Ning Su, Marinko V. Sarunic, Dao-Yi Yu, Andrew Mehnert, and Paula K. Yu
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0301 basic medicine ,Vasomotion ,Biology ,Retina ,Microcirculation ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Retinal Diseases ,medicine ,Humans ,Distribution (pharmacology) ,Microvessel ,Retinal Vessels ,Retinal ,Blood flow ,Sensory Systems ,Capillaries ,Oxygen ,Ophthalmology ,030104 developmental biology ,medicine.anatomical_structure ,chemistry ,Regional Blood Flow ,030221 ophthalmology & optometry ,Perfusion ,Neuroscience ,Tomography, Optical Coherence - Abstract
The central role of the cardiovascular system is to maintain adequate capillary perfusion. The spatially and temporally heterogeneous nature of capillary perfusion has been reported in some organs. However, such heterogeneous perfusion properties have not been sufficiently explored in the retina. Arguably, spatial and temporal heterogeneity of capillary perfusion could be more predominant in the retina than that in other organs. This is because the retina is one of the highest metabolic demand neural tissues yet it has a limited blood supply due to optical requirements. In addition, the unique heterogeneous distribution of retinal neural cells within different layers and regions, and the significant heterogeneity of intraretinal oxygen distribution and consumption add to the complexity. Retinal blood flow distribution must match consumption of nutrients such as oxygen and glucose within the retina at the cellular level in order to effectively maintain cell survival and function. Sophisticated local blood flow control in the microcirculation is likely required to control the retinal capillary perfusion to supply local retinal tissue and accommodate temporal and spatial variations in metabolic supply and demand. The authors would like to update the knowledge of the retinal microvessel and capillary network and retinal oxidative metabolism from their own studies and the work of others. The coupling between blood supply and energy demands in the retina is particularly interesting. We will mostly describe information regarding the retinal microvessel network and retinal oxidative metabolism relevant to the spatial and temporal heterogeneity of capillary perfusion. We believe that there is significant and necessary spatial and temporal heterogeneity and active regulation of retinal blood flow in the retina, particularly in the macular region. Recently, retinal optical coherence tomography angiography (OCTA) has been widely used in ophthalmology, both experimentally and clinically. OCTA could be a valuable tool for examining retinal microvessel and capillary network structurally and has potential for determining retinal capillary perfusion and its control. We have demonstrated spatial and temporal heterogeneity of capillary perfusion in the retina both experimentally and clinically. We have also found close relationships between the smallest arterioles and capillaries within paired arterioles and venules and determined the distribution of smooth muscle cell contraction proteins in these vessels. Spatial and temporal heterogeneity of retinal capillary perfusion could be a useful parameter to determine retinal microvessel regulatory capability as an early assay for retinal vascular diseases. This topic will be of great interest, not only for the eye but also other organs. The retina could be the best model for such investigations. Unlike cerebral vessels, retinal vessels can be seen even at the capillary level. The purpose of this manuscript is to share our current understanding with the readers and encourage more researchers and clinicians to investigate this field. We begin by reviewing the general principles of microcirculation properties and the spatial and temporal heterogeneity of the capillary perfusion in other organs, before considering the special requirements of the retina. The local heterogeneity of oxygen supply and demand in the retina and the need to have a limited and well-regulated retinal circulation to preserve the transparency of the retina is discussed. We then consider how such a delicate balance of metabolic supply and consumption is achieved. Finally we discuss how new imaging methodologies such as optical coherence tomography angiography may be able to detect the presence of spatial and temporal heterogeneity of capillary perfusion in a clinical setting. We also provide some new information of the control role of very small arterioles in the modulation of retinal capillary perfusion which could be an interesting topic for further investigation.
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- 2019
35. Wavefront sensor-less adaptive optics using deep reinforcement learning
- Author
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William Newberry, Eduard Durech, Jonas Franke, and Marinko V. Sarunic
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Wavefront ,Image quality ,Computer science ,Zernike polynomials ,business.industry ,Wavefront sensor ,Atomic and Molecular Physics, and Optics ,Deformable mirror ,Article ,symbols.namesake ,Optics ,symbols ,Reinforcement learning ,Adaptive optics ,business ,Hill climbing ,Biotechnology - Abstract
Image degradation due to wavefront aberrations can be corrected with adaptive optics (AO). In a typical AO configuration, the aberrations are measured directly using a Shack-Hartmann wavefront sensor and corrected with a deformable mirror in order to attain diffraction limited performance for the main imaging system. Wavefront sensor-less adaptive optics (SAO) uses the image information directly to determine the aberrations and provide guidance for shaping the deformable mirror, often iteratively. In this report, we present a Deep Reinforcement Learning (DRL) approach for SAO correction using a custom-built fluorescence confocal scanning laser microscope. The experimental results demonstrate the improved performance of the DRL approach relative to a Zernike Mode Hill Climbing algorithm for SAO.
- Published
- 2021
36. Progress on combining OCT-A with deep learning for diabetic retinopathy diagnosis
- Author
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Da Ma, Julian Lo, Mirza Faisal Beg, Michael Chambers, Marinko V. Sarunic, Timothy T. Yu, and Cyrus WaChong
- Subjects
genetic structures ,Artificial neural network ,Computer science ,business.industry ,Deep learning ,Pattern recognition ,macromolecular substances ,Optical coherence tomography angiography ,Diabetic retinopathy ,Lateral resolution ,medicine.disease ,medicine ,sense organs ,Artificial intelligence ,business ,Generative adversarial network - Abstract
We present novel approaches of implementing state-of-the-art deep learning techniques for the processing of optical coherence tomography angiography (OCT-A) images for the classification of diabetic retinopathy (DR) severity. The effects of feature-engineering on a deep neural network’s classification performance is compared against unprocessed OCT-A images. We investigate the effects of lower axial resolution (simulated by using a narrower spectral bandwidth) on the classification of DR severity, and the recovery of lost features using a generative adversarial network. We also explore the relationship between DR severity classification and lateral resolution.
- Published
- 2021
37. Effective scanning protocol for optical coherence tomography and angiography using a 1.6 MHz Fourier domain mode-locked laser source
- Author
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Arman Athwal, Yifan Jian, Ji Hoon Kwon, Marinko V. Sarunic, Destiny Hsu, Yusi Miao, and Myeong Jin Ju
- Subjects
Scanner ,Materials science ,medicine.diagnostic_test ,business.industry ,Flyback transformer ,Image processing ,Galvanometer ,Laser ,law.invention ,symbols.namesake ,Optics ,Optical coherence tomography ,law ,Angiography ,symbols ,medicine ,Raster scan ,business - Abstract
Fourier-domain mode-locked (FDML) laser sources allow OCT imaging systems with sweep rates reaching 1.6 MHz. However, physical limitations of conventional scanning systems require consideration. Resonant scanners fix imaging frequency, whereas galvanometer scanner (GS) systems require either raster scanning with large flyback that reduce usable data, or bi-directional scans that require many repeated scans. To overcome these limitations, we employed an effective 1.6 MHz stepped bi-directional scanning protocol, allowing 2 BM-scan OCT-angiography (OCTA) imaging using high-speed FDML. We present the ideal acquisition protocol and processing algorithm for optimum OCTA quality, with results demonstrating high vasculature contrast at 1.6 MHz scan rates.
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- 2021
38. Effective Scanning Protocol for Optical Coherence Tomography and Angiography using a 1.6 MHz Fourier Domain Mode-Locked Laser Source
- Author
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Yusi Miao, Jihoon Kwon, Destiny Hsu, Myeong Jin Ju, Yifan Jian, Marinko V. Sarunic, Yang Yu, and Arman Athwal
- Subjects
Optics ,Materials science ,Optical coherence tomography ,medicine.diagnostic_test ,business.industry ,Laser source ,Angiography ,Mode (statistics) ,medicine ,business ,Protocol (object-oriented programming) ,Fourier domain - Abstract
We present an ideal acquisition protocol and processing algorithm for optimum OCT angiography quality using Fourier-domain mode-locked (FDML) laser, with results demonstrating high vasculature contrast at 1.6 MHz scan rates in the human retina.
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- 2021
39. Investigation of the Peripapillary Choriocapillaris in Normal Tension Glaucoma, Primary Open-angle Glaucoma, and Control Eyes
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Zaid Mammo, Eduardo V. Navajas, Mahadev Bhalla, Kulbir S Gill, Myeong Jin Ju, Marinko V. Sarunic, Morgan Heisler, Steven Schendel, and Simon Warner
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medicine.medical_specialty ,genetic structures ,Open angle glaucoma ,business.industry ,Choroid ,Glaucoma ,Optical coherence tomography angiography ,medicine.disease ,eye diseases ,Visual field ,Absolute deviation ,Ophthalmology ,medicine.anatomical_structure ,Normal tension glaucoma ,medicine ,Humans ,sense organs ,Low Tension Glaucoma ,Visual Fields ,business ,Glaucoma, Open-Angle ,Intraocular Pressure ,Tomography, Optical Coherence ,Optic disc - Abstract
PRECIS The peripapillary choriocapillaris (CC) was observed to be significantly impaired in normal tension glaucoma (NTG) subjects compared with normal controls using optical coherence tomography angiography (OCTA). PURPOSE The aim was to quantitatively evaluate the peripapillary CC in NTG, primary open-angle glaucoma (POAG), and control eyes using OCTA. MATERIALS AND METHODS Ninety eyes (30 controls, 30 NTG, and 30 POAG) from 73 patients were imaged using the Zeiss Plex Elite 9000. Five repeat 3×3 mm OCTA scans were acquired both nasally and temporally to the optic disc and subsequently averaged. Four CC flow deficit (FD) measures were calculated using the fuzzy C-means approach: FD density (FDD), mean FD size (MFDS), FD number (FDN), and FD area (FDA). RESULTS Temporal NTG CC parameters were associated with visual field index and mean deviation (P
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- 2020
40. Real-time retinal layer segmentation of adaptive optics optical coherence tomography angiography with deep learning
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Acner Camino, Marinko V. Sarunic, Worawee Japongsori, Svetlana Borkovkina, and Yifan Jian
- Subjects
genetic structures ,Artificial neural network ,medicine.diagnostic_test ,business.industry ,Computer science ,Deep learning ,Computation ,Retinal ,eye diseases ,Real-time rendering ,chemistry.chemical_compound ,Optical coherence tomography ,chemistry ,medicine ,Segmentation ,Computer vision ,sense organs ,Artificial intelligence ,business ,Adaptive optics - Abstract
Real time rendering of en face optical coherence tomography (OCT) and OCT-angiography (OCTA) of arbitrary retinal layers in ophthalmic imaging sessions can be used to increase the yield rate of high-quality acquisitions, provide real-time feedback during image-guided surgeries and compensate aberrations in sensorless adaptive optics (AO) OCT and OCTA. However, real-time en face visualizations rely critically on the accurate segmentation of retinal layers in the three-dimensional OCT volumes. Here, we demonstrate a compact deep-learning architecture that segmented batches of OCT B-scans and produced the corresponding OCT and OCTA projections within only 41 ms. The short latency was possible due to a low complexity neural network structure, CNN compression using TensorRT, and the use of Tensor Cores on GPU hardware to accelerate the computation of convolutions. Inferencing of the original U-net was accelerated by 21 times without reducing the accuracy. To the best our knowledge, our work is the first demonstration of an ophthalmic imager with embedded artificial intelligence (AI) providing real-time feedback.
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- 2020
41. Multi-Contrast OCTA for Small Animal Imaging
- Author
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Destiny Hsu, Marinko V. Sarunic, Ji Hoon Kwon, and Myeong Jin Ju
- Subjects
Retinal pigment epithelium ,genetic structures ,020205 medical informatics ,Chemistry ,02 engineering and technology ,eye diseases ,medicine.anatomical_structure ,Multi contrast ,Small animal ,0202 electrical engineering, electronic engineering, information engineering ,Biophysics ,medicine ,sense organs ,Polarization diversity - Abstract
Vision-robbing disorders are frequently characterized by their effects on vasculature and the retinal pigment epithelium (RPE). Polarization diversity detection (PDD) selectively visualizes the RPE to evaluate its structure and integrity. We present multi-contrast OCTA on small animal models for simultaneous RPE and vasculature display.
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- 2020
42. Progress on Multimodal Adaptive Optics OCT and Multiphoton Imaging
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William Newberry, Daniel Wahl, Myeong Jin Ju, Marinko V. Sarunic, and Yifan Jian
- Subjects
Physics ,Retina ,genetic structures ,medicine.diagnostic_test ,business.industry ,eye diseases ,Optics ,medicine.anatomical_structure ,Two-photon excitation microscopy ,Optical coherence tomography ,parasitic diseases ,medicine ,Retinal imaging ,sense organs ,business ,Adaptive optics ,human activities ,Multiphoton imaging - Abstract
Two Photon Excited Fluorescence (TPEF) allows for high-resolution non-invasive retinal imaging, and benefits from guidance of Optical Coherence Tomography (OCT) and Sensorless Adaptive Optics (SAO). We present our progress on the use of SAO with OCT and TPEF for imaging the retina in mice.
- Published
- 2020
43. Substantially thinner internal granular layer and reduced molecular layer surface in the cerebellum of the Tc1 mouse model of Down Syndrome - a comprehensive morphometric analysis with active staining contrast-enhanced MRI
- Author
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Sieun Lee, Joanne A Matsubara, Marinko V. Sarunic, Karteek Popuri, Victor L. J. Tybulewicz, Jon O. Cleary, Elizabeth M. C. Fisher, Bernard Siow, Maria A. Zuluaga, Frances K. Wiseman, Nick M. Powell, Benjamin Sinclair, Manuel Jorge Cardoso, Ian F. Harrison, Sebastien Ourselin, Da Ma, Marc Modat, Mirza Faisal Beg, and Mark F. Lythgoe
- Subjects
Male ,Cerebellum ,Internal granular layer ,Cognitive Neuroscience ,Contrast Media ,Gadolinium ,Cortical surface area ,050105 experimental psychology ,Article ,lcsh:RC321-571 ,Cortical thickness ,03 medical and health sciences ,Cerebellar Cortex ,0302 clinical medicine ,medicine ,Animals ,0501 psychology and cognitive sciences ,Active staining ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,11 Medical and Health Sciences ,Neurons ,Neurology & Neurosurgery ,medicine.diagnostic_test ,Staining and Labeling ,Chemistry ,05 social sciences ,Neurogenesis ,Magnetic resonance imaging ,Granule cell ,Image Enhancement ,Cortical volume ,Magnetic Resonance Imaging ,Cortical morphometric analysis ,17 Psychology and Cognitive Sciences ,Mice, Inbred C57BL ,Disease Models, Animal ,medicine.anatomical_structure ,Neurology ,nervous system ,Cerebral cortex ,Cerebellar cortex ,Cerebellar cortical laminar structure ,Biophysics ,Down Syndrome ,Contrast-enhanced MRI ,Layer (electronics) ,Tc1 ,030217 neurology & neurosurgery - Abstract
Down Syndrome is a chromosomal disorder that affects the development of cerebellar cortical lobules. Impaired neurogenesis in the cerebellum varies among different types of neuronal cells and neuronal layers. In this study, we developed an imaging analysis framework that utilizes gadolinium-enhanced ex vivo mouse brain MRI. We extracted the middle Purkinje layer of the mouse cerebellar cortex, enabling the estimation of the volume, thickness, and surface area of the entire cerebellar cortex, the internal granular layer, and the molecular layer in the Tc1 mouse model of Down Syndrome. The morphometric analysis of our method revealed that a larger proportion of the cerebellar thinning in this model of Down Syndrome resided in the inner granule cell layer, while a larger proportion of the surface area shrinkage was in the molecular layer., Graphical abstract Image, graphical abstract
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- 2020
44. Quantitative multi-contrast
- Author
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Destiny, Hsu, Ji Hoon, Kwon, Ringo, Ng, Shuichi, Makita, Yoshiaki, Yasuno, Marinko V, Sarunic, and Myeong Jin, Ju
- Subjects
genetic structures ,sense organs ,eye diseases ,Article - Abstract
Retinal microvasculature and the retinal pigment epithelium (RPE) play vital roles in maintaining the health and metabolic activity of the eye. Visualization of these retina structures is essential for pre-clinical studies of vision-robbing diseases, such as age-related macular degeneration (AMD). We have developed a quantitative multi-contrast polarization diversity OCT and angiography (QMC-PD-OCTA) system for imaging and visualizing pigment in the RPE using degree of polarization uniformity (DOPU), along with flow in the retinal capillaries using OCT angiography (OCTA). An adaptive DOPU averaging kernel was developed to increase quantifiable values from visual data, and QMC en face images permit simultaneous visualization of vessel location, depth, melanin region thickness, and mean DOPU values, allowing rapid identification and differentiation of disease symptoms. The retina of five different mice strains were measured in vivo, with results demonstrating potential for pre-clinical studies of retinal disorders.
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- 2020
45. In vivo Retinal Fluorescence Imaging With Curcumin in an Alzheimer Mouse Model
- Author
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Daniel Wahl, Da Ma, Joanne A Matsubara, Eleanor To, Jing Z Cui, Ahmad Sidiqi, Marinko V. Sarunic, Mirza Faisal Beg, Elliott To, and Sieun Lee
- Subjects
Pathology ,medicine.medical_specialty ,Amyloid beta ,scanning laser ophthalmoscopy ,Retinal ganglion ,lcsh:RC321-571 ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,In vivo ,medicine ,Alzheimer’s Disease ,retinal ganglion cell ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,030304 developmental biology ,Original Research ,APP/PS1 ,0303 health sciences ,Retina ,biology ,General Neuroscience ,Retinal ,plaques ,Scanning laser ophthalmoscopy ,amyloid beta ,medicine.anatomical_structure ,chemistry ,Retinal ganglion cell ,Curcumin ,biology.protein ,fluorescence ,030217 neurology & neurosurgery ,Neuroscience - Abstract
Alzheimer's disease (AD) is characterized by amyloid beta (Aβ) plaques in the brain detectable by highly invasive in vivo brain imaging or in post-mortem tissues. A non-invasive and inexpensive screening method is needed for early diagnosis of asymptomatic AD patients. The shared developmental origin and similarities with the brain make the retina a suitable surrogate tissue to assess Aβ load in AD. Using curcumin, a FluoroProbe that binds to Aβ, we labeled and measured the retinal fluorescence in vivo and compared with the immunohistochemical measurements of the brain and retinal Aβ load in the APP/PS1 mouse model. In vivo retinal images were acquired every 2 months using custom fluorescence scanning laser ophthalmoscopy (fSLO) after tail vein injections of curcumin in individual mice followed longitudinally from ages 5 to 19 months. At the same time points, 1-2 mice from the same cohort were sacrificed and immunohistochemistry was performed on their brain and retinal tissues. Results demonstrated cortical and retinal Aβ immunoreactivity were significantly greater in Tg than WT groups. Age-related increase in retinal Aβ immunoreactivity was greater in Tg than WT groups. Retinal Aβ immunoreactivity was present in the inner retinal layers and consisted of small speck-like extracellular deposits and intracellular labeling in the cytoplasm of a subset of retinal ganglion cells. In vivo retinal fluorescence with curcumin injection was significantly greater in older mice (11-19 months) than younger mice (5-9 months) in both Tg and WT groups. In vivo retinal fluorescence with curcumin injection was significantly greater in Tg than WT in older mice (ages 11-19 months). Finally, and most importantly, the correlation between in vivo retinal fluorescence with curcumin injection and Aβ immunoreactivity in the cortex was stronger in Tg compared to WT groups. Our data reveal that retina and brain of APP/PS1 Tg mice increasingly express Aβ with age. In vivo retinal fluorescence with curcumin correlated strongly with cortical Aβ immunohistochemistry in Tg mice. These findings suggest that using in vivo fSLO imaging of AD-susceptible retina may be a useful, non-invasive method of detecting Aβ in the retina as a surrogate indicator of Aβ load in the brain.
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- 2020
46. Amyloid Beta Immunoreactivity in the Retinal Ganglion Cell Layer of the Alzheimer's Eye
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Eleanor To, Mirza Faisal Beg, Veronica Hirsch-Reinshagen, Ian R. A. Mackenzie, Joanne A Matsubara, Sieun Lee, Brandon Mcilmoyle, Marinko V. Sarunic, Kailun Jiang, Jing Z Cui, Qinyuan Alis Xu, Ging-Yuek Robin Hsiung, and Brennan D. Eadie
- Subjects
0301 basic medicine ,Neuritic plaques ,Pathology ,medicine.medical_specialty ,retina ,Temporal retina ,Amyloid beta ,mid-peripheral retina ,Central nervous system ,lcsh:RC321-571 ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,medicine ,Dementia ,Senile plaques ,retinal ganglion cell ,lcsh:Neurosciences. Biological psychiatry. Neuropsychiatry ,Original Research ,Retina ,biology ,business.industry ,General Neuroscience ,Retinal ,medicine.disease ,amyloid-beta ,3. Good health ,030104 developmental biology ,medicine.anatomical_structure ,chemistry ,Retinal ganglion cell ,biology.protein ,Cerebral amyloid angiopathy ,business ,ophthalmic imaging ,Alzheimer’s disease ,030217 neurology & neurosurgery ,Neuroscience - Abstract
Alzheimer's disease (AD) is the most prevalent form of dementia, accounting for 60-70% of all dementias. AD is often under-diagnosed and recognized only at a later, more advanced stage, and this delay in diagnosis has been suggested as a contributing factor in the numerous unsuccessful AD treatment trials. Although there is no known cure for AD, early diagnosis is important for disease management and care. A hallmark of AD is the deposition of amyloid-β (Aβ)-containing senile neuritic plaques and neurofibrillary tangles composed of hyperphosporylated tau in the brain. However, current in vivo methods to quantify Aβ in the brain are invasive, requiring radioactive tracers and positron emission tomography. Toward development of alternative methods to assess AD progression, we focus on the retinal manifestation of AD pathology. The retina is an extension of the central nervous system uniquely accessible to light-based, non-invasive ophthalmic imaging. However, earlier studies in human retina indicate that the literature is divided on the presence of Aβ in the AD retina. To help resolve this disparity, this study assessed retinal tissues from neuropathologically confirmed AD cases to determine the regional distribution of Aβ in retinal wholemounts and to inform on future retinal image studies targeting Aβ. Concurrent post-mortem brain tissues were also collected. Neuropathological cortical assessments including neuritic plaque (NP) scores and cerebral amyloid angiopathy (CAA) were correlated with retinal Aβ using immunohistochemistry, confocal microscopy, and quantitative image analysis. Aβ load was compared between AD and control (non-AD) eyes. Our results indicate that levels of intracellular and extracellular Aβ retinal deposits were significantly higher in AD than controls. Mid-peripheral Aβ levels were greater than central retina in both AD and control eyes. In AD retina, higher intracellular Aβ was associated with lower NP score, while higher extracellular Aβ was associated with higher CAA score. Our data support the feasibility of using the retinal tissue to assess ocular Aβ as a surrogate measure of Aβ in the brain of individuals with AD. Specifically, mid-peripheral retina possesses more Aβ deposition than central retina, and thus may be the optimal location for future in vivo ocular imaging.
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- 2020
47. Evaluating Signs of Microangiopathy Secondary to Diabetes in Different Areas of the Retina with Swept Source OCTA
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Eduardo V. Navajas, Sonja Karst, David Maberley, Julian Lo, Nathan Schuck, Morgan Heisler, Marinko V. Sarunic, and Abdollah Safari
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Male ,medicine.medical_specialty ,Fovea Centralis ,030209 endocrinology & metabolism ,Retina ,03 medical and health sciences ,0302 clinical medicine ,Ophthalmology ,Diabetes mellitus ,medicine ,Humans ,Prospective Studies ,Fluorescein Angiography ,Nose ,Diabetic Retinopathy ,business.industry ,Microangiopathy ,Parafovea ,Retinal Vessels ,OCT angiography ,Diabetic retinopathy ,Middle Aged ,medicine.disease ,Capillaries ,medicine.anatomical_structure ,Cross-Sectional Studies ,030221 ophthalmology & optometry ,Female ,business ,Perfusion ,retinal blood flow ,Tomography, Optical Coherence ,Optic disc - Abstract
Purpose The purpose of this study was to compare perfusion parameters of the parafovea with scans outside the parafovea to find an area most susceptible to changes secondary to diabetic retinopathy (DR). Methods Patients with different DR severity levels as well as controls were included in this cross-sectional clinical trial. Seven standardized 3 × 3 mm areas were recorded with Swept Source Optical Coherence Tomography Angiography: one centered on the fovea, three were temporal to the fovea, and three nasally to the optic disc. The capillary perfusion density (PD) of the superficial capillary complex (SCC) and deep capillary complex (DCC) as well as the fractal dimension (FD) were generated. Statistical analyses were done with R software. Results One hundred ninety-two eyes (33 controls, 51 no-DR, 41 mild DR, 37 moderate/severe DR, and 30 proliferative DR), of which 105 patients with diabetes and 25 healthy controls were included (59 ± 15 years; 62 women). Mean PD of the DCC was significantly less in patients without DR (parafovea = 0.48 ± 0.03; temporal = 0.48 ± 0.02; and nasal = 0.48 ± 0.03) compared to controls (parafovea = 0.49 ± 0.02; temporal = 0.50 ± 0.02; and nasal = 0.50 ± 0.03). With increasing DR severity, PD and FD of the SCC and DCC further decreased. Conclusions Capillary perfusion of the retina is affected early by diabetes. PD of the DCC was significantly reduced in patients with diabetes who did not have any clinical signs of DR. The capillary network outside the parafovea was more susceptible to capillary perfusion deficits compared to the capillaries close to the fovea. Trial registration clinicaltrial.gov, NCT03765112, https://clinicaltrials.gov/ct2/show/NCT03765112?term=NCT03765112&rank=1.
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- 2020
48. Real-time retinal layer segmentation of OCT volumes with GPU accelerated inferencing using a compressed, low-latency neural network
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Worawee Janpongsri, Acner Camino, Svetlana Borkovkina, Yifan Jian, and Marinko V. Sarunic
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genetic structures ,Image quality ,Computer science ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Image processing ,01 natural sciences ,Article ,Rendering (computer graphics) ,010309 optics ,03 medical and health sciences ,Data acquisition ,Optical coherence tomography ,0103 physical sciences ,medicine ,Computer vision ,Segmentation ,Adaptive optics ,030304 developmental biology ,0303 health sciences ,Artificial neural network ,medicine.diagnostic_test ,business.industry ,Atomic and Molecular Physics, and Optics ,eye diseases ,Artificial intelligence ,sense organs ,business ,Biotechnology - Abstract
Segmentation of retinal layers in optical coherence tomography (OCT) is an essential step in OCT image analysis for screening, diagnosis, and assessment of retinal disease progression. Real-time segmentation together with high-speed OCT volume acquisition allows rendering of en face OCT of arbitrary retinal layers, which can be used to increase the yield rate of high-quality scans, provide real-time feedback during image-guided surgeries, and compensate aberrations in adaptive optics (AO) OCT without using wavefront sensors. We demonstrate here unprecedented real-time OCT segmentation of eight retinal layer boundaries achieved by 3 levels of optimization: 1) a modified, low complexity, neural network structure, 2) an innovative scheme of neural network compression with TensorRT, and 3) specialized GPU hardware to accelerate computation. Inferencing with the compressed network U-NetRT took 3.5 ms, improving by 21 times the speed of conventional U-Net inference without reducing the accuracy. The latency of the entire pipeline from data acquisition to inferencing was only 41 ms, enabled by parallelized batch processing. The system and method allow real-time updating of en face OCT and OCTA visualizations of arbitrary retinal layers and plexuses in continuous mode scanning. To the best our knowledge, our work is the first demonstration of an ophthalmic imager with embedded artificial intelligence (AI) providing real-time feedback.
- Published
- 2020
49. ADAPTIVE OPTICS OPTICAL COHERENCE TOMOGRAPHY IN A CASE OF ACUTE ZONAL OCCULT OUTER RETINOPATHY
- Author
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Vinicius Vanzan, Arman Athwal, Qinyuan Alis Xu, Morgan Heisler, Myeong Jin Ju, Daniela Ferrara, Marinko V. Sarunic, and Eduardo V. Navajas
- Subjects
medicine.medical_specialty ,genetic structures ,Visual Acuity ,Optical coherence tomography ,Ophthalmology ,medicine ,Humans ,Fluorescein Angiography ,Adaptive optics ,Scotoma ,Acute zonal occult outer retinopathy ,Multimodal imaging ,Retina ,medicine.diagnostic_test ,White Dot Syndromes ,business.industry ,Blind spot ,General Medicine ,Normal retina ,Middle Aged ,Fluorescein angiography ,eye diseases ,medicine.anatomical_structure ,Cross-Sectional Studies ,Female ,sense organs ,business ,Tomography, Optical Coherence - Abstract
PURPOSE To report a case of acute zonal occult outer retinopathy in which adaptive optics (AO) facilitated visualization of abnormal photoreceptors previously thought to be in an area of normal retina on conventional optical coherence tomography (OCT). METHODS Case report. RESULTS A 51-year-old woman presents with 11-month history of photopsias and scotoma in the temporal visual field of her left eye. Ocular imaging including fluorescein angiography, fundus autofluorescence and OCT suggested the diagnosis of acute zonal occult outer retinopathy in the left eye. Adaptive optics optical coherence tomography (AO-OCT) revealed photoreceptor abnormalities not previously identified in conventional OCT, in areas apparently normal on multimodal imaging. On enface and cross-sectional AO-OCT, round and evenly spaced hyperreflectivity corresponding to normal cone mosaic (Pattern 1) was adjacent to unevenly and disrupted cone hyperreflectivity (Pattern 2) and areas with hyporeflectivity or no cone reflectivity (Pattern 3). Cross-sectional AO-OCT of Patterns 2 and 3 also revealed attenuation of ellipsoid zone with loss of interdigitation zone. CONCLUSION Adaptive optics OCT documented cone photoreceptors in finer details than conventional OCT and revealed early changes in a patient with acute zonal occult outer retinopathy, in an area of the retina thought to be normal on conventional multimodal imaging. These findings may provide important insight into pathogenesis and progression of the disease.
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- 2020
50. Semi-supervised deep learning based 3D analysis of the peripapillary region
- Author
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Zaid Mammo, Mahadev Bhalla, Mirza Faisal Beg, Julian Lo, Myeong Jin Ju, Morgan Heisler, Marinko V. Sarunic, and Sieun Lee
- Subjects
genetic structures ,Computer science ,Nerve fiber layer ,Glaucoma ,01 natural sciences ,Article ,010309 optics ,03 medical and health sciences ,chemistry.chemical_compound ,Optical coherence tomography ,0103 physical sciences ,medicine ,Medical imaging ,Segmentation ,030304 developmental biology ,0303 health sciences ,medicine.diagnostic_test ,business.industry ,Deep learning ,Pattern recognition ,Retinal ,medicine.disease ,Atomic and Molecular Physics, and Optics ,eye diseases ,medicine.anatomical_structure ,chemistry ,Optic nerve ,Artificial intelligence ,sense organs ,business ,Biotechnology - Abstract
Optical coherence tomography (OCT) has become an essential tool in the evaluation of glaucoma, typically through analyzing retinal nerve fiber layer changes in circumpapillary scans. Three-dimensional OCT volumes enable a much more thorough analysis of the optic nerve head (ONH) region, which may be the site of initial glaucomatous optic nerve damage. Automated analysis of this region is of great interest, though large anatomical variations and the termination of layers make the requisite peripapillary layer and Bruch’s membrane opening (BMO) segmentation a challenging task. Several machine learning-based segmentation methods have been proposed for retinal layer segmentation, and a few for the ONH region, but they typically depend on either heavily averaged or pre-processed B-scans or a large amount of annotated data, which is a tedious task and resource-intensive. We evaluated a semi-supervised adversarial deep learning method for segmenting peripapillary retinal layers in OCT B-scans to take advantage of unlabeled data. We show that the use of a generative adversarial network and unlabeled data can improve the performance of segmentation. Additionally, we use a Faster R-CNN architecture to automatically segment the BMO. The proposed methods are then used for the 3D morphometric analysis of both control and glaucomatous ONH volumes to demonstrate the potential for clinical utility.
- Published
- 2020
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