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1. Microsatellite diversity of the Nordic type of goats in relation to breed conservation: how relevant is pure ancestry?

Author

Lenstra, J.A., Tigchelaar, J., Biebach, I., Hallsson, J.H., Kantanen, J., Nielsen, V.H., Pompanon, F., Naderi, S., Rezaei, H.R., Sæther, N., Ertugrul, O., Grossen, C., Camenisch, G., VosLoohuis, M., van Straten, M., de Poel, E.A., Windig, J., Oldenbroek, K., AboShehada, Mahamoud, Marsan, Paolo Ajmone, Tarrayrah, Jamil Al, Angiolillo, Antonella, Baret, Philip, Baumung, Roswitha, BejaPereira, Albano, Bertaglia, Marco, Bordonaro, Salvatore, Brandt, Horst, Bruford, Mike, Caloz, Régis, Canali, Gabriele, Canon, Javier, Cappuccio, Irene, Carta, Antonello, Cicogna, Mario, Crepaldi, Paola, Dalamitra, Stella, Dobi, Petrit, Dunner, Susana, DʼUrso, Giuseppe, El Barody, M. A. A., England, Phillip, Erhardt, Georg, Ertuğrul, Okan, Glowatzki, MarieLouise, IbeaghaAwemu, Eveline, Strzelec, Ewa, Fadlaoui, Aziz, Fornarelli, Francesca, Garcia, David, Georgoudis, Andreas, Giovenzana, Stefano, Gutscher, Katja, Hewitt, Godfrey, Hoda, Anila, Istvan, Anton, Jones, Sam, Joost, Stéphane, Juma, Gabriela, Karetsou, Katerina, Kliambas, Georgios, Koban, Evren, Krugmann, Daniela, Kutita, Olga, Lazlo, Fesus, Ligda, Christina, Lipsky, Shirin, Luikart, Gordon, Lühken, Gesine, Marilli, Marta, Marletta, Donata, Milanesi, Elisabetta, Negrini, Riccardo, Nijman, Isaäc J., Niznikowski, Roman, ObexerRuff, Gabriela, Papachristoforou, Christos, Pariset, Lorraine, Peter, Marco Pellecchia, Christina, Perez, Trinidad, Pietrolà, Emilio, Pilla, Fabio, Popielarczyk, Dominik, Prinzenberg, MariaEva, Roosen, Jutta, Scarpa, Riccardo, Sechi, Tiziana, Taberlet, Pierre, Taylor, Martin, Togan, Inci, Trommetter, Michel, Valentini, Alessio, Van Cann, Lisette M., Vlaic, Augustin, Wiskin, Louise, and Zundel, Stéphanie

Published
2017
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2. Microsatellite diversity of the Nordic type of goats in relation to breed conservation: how relevant is pure ancestry?

Author

Lenstra, J. A, Tigchelaar, J., Biebach, I., Hallsson, J. H., Kantanen, J., Nielsen, V. H., Pompanon, F., Naderi, S., Rezaei, H. R., Sæther, N., Ertugrul, O., Grossen, C., Camenisch, G., Vos Loohuis, M., van Straten, M., de Poel, E. A., Windig, J., Oldenbroek, K., Abo Shehada, Mahamoud, Ajmone Marsan, Paolo, Tarrayrah, Jamil Al, Angiolillo, Antonella, Baret, Philip, Baumung, Roswitha, Beja Pereira, Albano, Bertaglia, Marco, Bordonaro, Salvatore, Brandt, Horst, Bruford, Mike, Caloz, Régi, Canali, Gabriele, Canon, Javier, Cappuccio, Irene, Carta, Antonello, Cicogna, Mario, Crepaldi, Paola, Dalamitra, Stella, Dobi, Petrit, Dunner, Susana, D'Urso, Giuseppe, El Barody, M. A. A., England, Phillip, Erhardt, Georg, Ertuğrul, Okan, Glowatzki, Marie Louise, Ibeagha Awemu, Eveline, Strzelec, Ewa, Fadlaoui, Aziz, Fornarelli, Francesca, Garcia, David, Georgoudis, Andrea, Giovenzana, Stefano, Gutscher, Katja, Hewitt, Godfrey, Hoda, Anila, Istvan, Anton, Jones, Sam, Joost, Stephane, Juma, Gabriela, Karetsou, Katerina, Kliambas, Georgio, Koban, Evren, Krugmann, Daniela, Kutita, Olga, Lazlo, Fesu, Ligda, Christina, Lipsky, Shirin, Luikart, Gordon, Lühken, Gesine, Marilli, Marta, Marletta, Donata, Milanesi, Elisabetta, Negrini, Riccardo, Nijman, Isaäc J., Niznikowski, Roman, Obexer Ruff, Gabriela, Papachristoforou, Christo, Pariset, Lorraine, Peter, Marco Pellecchia, Christina, Null, Perez, Trinidad, Pietrolà, Emilio, Pilla, Fabio, Popielarczyk, Dominik, Prinzenberg, Maria Eva, Roosen, Jutta, Scarpa, Riccardo, Sechi, Tiziana, Taberlet, Pierre, Taylor, Martin, Togan, Inci, Trommetter, Michel, Valentini, Alessio, Van Cann, Lisette M., Vlaic, Augustin, Wiskin, Louise, Zundel, Stéphanie, Ajmone Marsan, Paolo (ORCID:0000-0003-3165-4579), Canali, Gabriele (ORCID:0000-0001-9244-8184), Negrini, Riccardo (ORCID:0000-0002-8735-0286), Lenstra, J. A, Tigchelaar, J., Biebach, I., Hallsson, J. H., Kantanen, J., Nielsen, V. H., Pompanon, F., Naderi, S., Rezaei, H. R., Sæther, N., Ertugrul, O., Grossen, C., Camenisch, G., Vos Loohuis, M., van Straten, M., de Poel, E. A., Windig, J., Oldenbroek, K., Abo Shehada, Mahamoud, Ajmone Marsan, Paolo, Tarrayrah, Jamil Al, Angiolillo, Antonella, Baret, Philip, Baumung, Roswitha, Beja Pereira, Albano, Bertaglia, Marco, Bordonaro, Salvatore, Brandt, Horst, Bruford, Mike, Caloz, Régi, Canali, Gabriele, Canon, Javier, Cappuccio, Irene, Carta, Antonello, Cicogna, Mario, Crepaldi, Paola, Dalamitra, Stella, Dobi, Petrit, Dunner, Susana, D'Urso, Giuseppe, El Barody, M. A. A., England, Phillip, Erhardt, Georg, Ertuğrul, Okan, Glowatzki, Marie Louise, Ibeagha Awemu, Eveline, Strzelec, Ewa, Fadlaoui, Aziz, Fornarelli, Francesca, Garcia, David, Georgoudis, Andrea, Giovenzana, Stefano, Gutscher, Katja, Hewitt, Godfrey, Hoda, Anila, Istvan, Anton, Jones, Sam, Joost, Stephane, Juma, Gabriela, Karetsou, Katerina, Kliambas, Georgio, Koban, Evren, Krugmann, Daniela, Kutita, Olga, Lazlo, Fesu, Ligda, Christina, Lipsky, Shirin, Luikart, Gordon, Lühken, Gesine, Marilli, Marta, Marletta, Donata, Milanesi, Elisabetta, Negrini, Riccardo, Nijman, Isaäc J., Niznikowski, Roman, Obexer Ruff, Gabriela, Papachristoforou, Christo, Pariset, Lorraine, Peter, Marco Pellecchia, Christina, Null, Perez, Trinidad, Pietrolà, Emilio, Pilla, Fabio, Popielarczyk, Dominik, Prinzenberg, Maria Eva, Roosen, Jutta, Scarpa, Riccardo, Sechi, Tiziana, Taberlet, Pierre, Taylor, Martin, Togan, Inci, Trommetter, Michel, Valentini, Alessio, Van Cann, Lisette M., Vlaic, Augustin, Wiskin, Louise, Zundel, Stéphanie, Ajmone Marsan, Paolo (ORCID:0000-0003-3165-4579), Canali, Gabriele (ORCID:0000-0001-9244-8184), and Negrini, Riccardo (ORCID:0000-0002-8735-0286)

Abstract

In the last decades, several endangered breeds of livestock species have been re-established effectively. However, the successful revival of the Dutch and Danish Landrace goats involved crossing with exotic breeds and the ancestry of the current populations is therefore not clear. We have generated genotypes for 27 FAO-recommended microsatellites of these landraces and three phenotypically similar Nordic-type landraces and compared these breeds with central European, Mediterranean and south-west Asian goats. We found decreasing levels of genetic diversity with increasing distance from the south-west Asian domestication site with a south-east-to-north-west cline that is clearly steeper than the Mediterranean east-to-west cline. In terms of genetic diversity, the Dutch Landrace comes next to the isolated Icelandic breed, which has an extremely low diversity. The Norwegian coastal goat and the Finnish and Icelandic landraces are clearly related. It appears that by a combination of mixed origin and a population bottleneck, the Dutch and Danish Land-races are separated from the other breeds. However, the current Dutch and Danish populations with the multicoloured and long-horned appearance effectively substitute for the original breed, illustrating that for conservation of cultural heritage, the phenotype of a breed is more relevant than pure ancestry and the genetic diversity of the original breed. More in general, we propose that for conservation, the retention of genetic diversity of an original breed and of the visual phenotype by which the breed is recognized and defined needs to be considered separately.

Published
2017

3. Large-Scale Mitochondrial DNA Analysis of the Domestic Goat Reveals Six Haplogroups with High Diversity

Author

Naderi, Saeid, Rezaei, Hamid-Reza, Taberlet, Pierre, Zundel, Stéphanie, Rafat, Seyed-Abbas, Naghash, Hamid-Reza, El- Barody, Mohamed A. A., Ertugrul, Okan, Pompanon, François, Abo-Shehada, Mahamoud, Ajmone-Marsan, Paolo, Al Tarrayrah, Jamil, Baret, Philippe, Baumung, Roswitha, Beja-Pereira, Albano, Bertaglia, Marco, Bordonaro, Salvatore, Bruford, Mike, Caloz, Régis, Canali, Gabriele, Canon, Javier, Cappuccio, Irene, Carta, Antonello, Cicogna, Mario, Cortes, Oscar, Crepaldi, Paola, Dalamitra, Stella, Daniela, Krugmann, Dobi, Petrit, Dominik, Popielarczyk, Dunner, Susana, D'Urso, Giuseppe, England, Phillip, Erhardt, Georg, Prinzenberg, Eva-Maria, Ibeagha-Awemu, Eveline, Strzelec, Ewa, Fadlaoui, Aziz, Fornarelli, Francesca, Garcia, David, Georgoudis, Andreas, Lühken, Gesine, Giovenzana, Stefano, Gutscher, Katja, Hewitt, Godfrey, Hoda, Anila, Brandt, Horst, Istvan, Anton, Juma, Gabriela, Joost, Stéphane, Jones, Sam, Karetsou, Katerina, Kliambas, Georgios, Koban, Evren, Kutita, Olga, Fesus, Lazlo, Lenstra, Johannes A., Ligda, Christina, Lipsky, Shirin, Luikart, Gordon, Glowatzki, Marie-Louise, Marilli, Marta, Marletta, Donata, Milanesi, Elisabetta, Negrini, Riccardo, Nijman, Isaäc J., Obexer-Ruff, Gabriela, Papachristoforou, Christos, Pariset, Lorraine, Pellecchia, Marco, Peter, Christina, Perez, Trinidad, Pilla, Fabio, D'Andrea, Mariasilvia, Niznikowski, Roman, Roosen, Jutta, Scarpa, Riccardo, Sechi, Tiziana, Taylor, Martin, Togan, Inci, Trommetter, Michel, Valentini, Alessio, Van Cann, Lisette M., Vlaic, Augustin, and Wiskin, Louise

Subjects
Domestic Goat, DNA mitocondriale, Mitochondrial DNA, Capra domestica
Abstract

From the beginning of domestication, the transportation of domestic animals resulted in genetic and demographic processes that explain their present distribution and genetic structure. Thus studying the present genetic diversity helps to better understand the history of domestic species. Methodology/Principal Findings. The genetic diversity of domestic goats has been characterized with 2430 individuals from all over the old world, including 946 new individuals from regions poorly studied until now (mainly the Fertile Crescent). These individuals represented 1540 haplotypes for the HV segment of the mitochondrial DNA (mtDNA) control region. This large-scale study allowed the establishment of a clear nomenclature of the goat maternal haplogroups. Only five of the six previously defined groups of haplotypes were divergent enough to be considered as different haplogroups. Moreover a new mitochondrial group has been localized around the Fertile Crescent. All groups showed very high haplotype diversity. Most of this diversity was distributed among groups and within geographic regions. The weak geographic structure may result from the worldwide distribution of the dominant A haplogroup (more than 90% of the individuals). The large-scale distribution of other haplogroups (except one), may be related to human migration. The recent fragmentation of local goat populations into discrete breeds is not detectable with mitochondrial markers. The estimation of demographic parameters from mismatch analyses showed that all groups had a recent demographic expansion corresponding roughly to the period when domestication took place. But even with a large data set it remains difficult to give relative dates of expansion for different haplogroups because of large confidence intervals Conclusions/Significance. We propose standard criteria for the definition of the different haplogroups based on the result of mismatch analysis and on the use of sequences of reference. Such a method could be also applied for clarifying the nomenclature of mitochondrial haplogroups in other domestic species.

Published
2011

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