34 results on '"Marian L. Burr"'
Search Results
2. CRISPR-Cas9 screening identifies an IRF1-SOCS1-mediated negative feedback loop that limits CXCL9 expression and antitumor immunity
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Imran G. House, Emily B. Derrick, Kevin Sek, Amanda X.Y. Chen, Jasmine Li, Junyun Lai, Kirsten L. Todd, Isabelle Munoz, Jessica Michie, Cheok Weng Chan, Yu-Kuan Huang, Jack D. Chan, Emma V. Petley, Junming Tong, DatMinh Nguyen, Sven Engel, Peter Savas, Simon J. Hogg, Stephin J. Vervoort, Conor J. Kearney, Marian L. Burr, Enid Y.N. Lam, Omer Gilan, Sammy Bedoui, Ricky W. Johnstone, Mark A. Dawson, Sherene Loi, Phillip K. Darcy, and Paul A. Beavis
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CP: Cancer ,Biology (General) ,QH301-705.5 - Abstract
Summary: CXCL9 expression is a strong predictor of response to immune checkpoint blockade therapy. Accordingly, we sought to develop therapeutic strategies to enhance the expression of CXCL9 and augment antitumor immunity. To perform whole-genome CRISPR-Cas9 screening for regulators of CXCL9 expression, a CXCL9-GFP reporter line is generated using a CRISPR knockin strategy. This approach finds that IRF1 limits CXCL9 expression in both tumor cells and primary myeloid cells through induction of SOCS1, which subsequently limits STAT1 signaling. Thus, we identify a subset of STAT1-dependent genes that do not require IRF1 for their transcription, including CXCL9. Targeting of either IRF1 or SOCS1 potently enhances CXCL9 expression by intratumoral macrophages, which is further enhanced in the context of immune checkpoint blockade therapy. We hence show a non-canonical role for IRF1 in limiting the expression of a subset of STAT1-dependent genes through induction of SOCS1.
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- 2023
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3. Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia
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Charles C. Bell, Katie A. Fennell, Yih-Chih Chan, Florian Rambow, Miriam M. Yeung, Dane Vassiliadis, Luis Lara, Paul Yeh, Luciano G. Martelotto, Aljosja Rogiers, Brandon E. Kremer, Olena Barbash, Helai P. Mohammad, Timothy M. Johanson, Marian L. Burr, Arindam Dhar, Natalie Karpinich, Luyi Tian, Dean S. Tyler, Laura MacPherson, Junwei Shi, Nathan Pinnawala, Chun Yew Fong, Anthony T. Papenfuss, Sean M. Grimmond, Sarah-Jane Dawson, Rhys S. Allan, Ryan G. Kruger, Christopher R. Vakoc, David L. Goode, Shalin H. Naik, Omer Gilan, Enid Y. N. Lam, Jean-Christophe Marine, Rab K. Prinjha, and Mark A. Dawson
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Science - Abstract
There is increasing evidence that epigenetic mechanisms contribute to therapeutic resistance in cancer. Here the authors study AML patient samples and a mouse model of non-genetic resistance and find that transcriptional plasticity drives stable epigenetic resistance, and identify regulators of enhancer function as important modulators of resistance.
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- 2019
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4. Supplementary table from Pharmacologic Reduction of Mitochondrial Iron Triggers a Noncanonical BAX/BAK-Dependent Cell Death
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Mark A. Dawson, Raphaël Rodriguez, Kate McArthur, Andrew H. Wei, David C.S. Huang, Kristin K. Brown, Andrew G. Cox, Georg Ramm, Sarah-Jane Dawson, Estelle Duprez, Mathilde Poplineau, Giovanna Pomilio, Véronique Litalien, Marian L. Burr, Tatiana Cañeque, Enid Y.N. Lam, Brian Liddicoat, Laura MacPherson, Lorey Smith, Kevin Tran, Kah Lok Chan, James A. Kuzich, Caitlin L. Rowe, Ali Motazedian, Yih-Chih Chan, Fiona C. Brown, Sebastian Müller, Andrew A. Guirguis, and Sylvain Garciaz
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Supplementary table from Pharmacologic Reduction of Mitochondrial Iron Triggers a Noncanonical BAX/BAK-Dependent Cell Death
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- 2023
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5. Data from Pharmacologic Reduction of Mitochondrial Iron Triggers a Noncanonical BAX/BAK-Dependent Cell Death
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Mark A. Dawson, Raphaël Rodriguez, Kate McArthur, Andrew H. Wei, David C.S. Huang, Kristin K. Brown, Andrew G. Cox, Georg Ramm, Sarah-Jane Dawson, Estelle Duprez, Mathilde Poplineau, Giovanna Pomilio, Véronique Litalien, Marian L. Burr, Tatiana Cañeque, Enid Y.N. Lam, Brian Liddicoat, Laura MacPherson, Lorey Smith, Kevin Tran, Kah Lok Chan, James A. Kuzich, Caitlin L. Rowe, Ali Motazedian, Yih-Chih Chan, Fiona C. Brown, Sebastian Müller, Andrew A. Guirguis, and Sylvain Garciaz
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Cancer cell metabolism is increasingly recognized as providing an exciting therapeutic opportunity. However, a drug that directly couples targeting of a metabolic dependency with the induction of cell death in cancer cells has largely remained elusive. Here we report that the drug-like small-molecule ironomycin reduces the mitochondrial iron load, resulting in the potent disruption of mitochondrial metabolism. Ironomycin promotes the recruitment and activation of BAX/BAK, but the resulting mitochondrial outer membrane permeabilization (MOMP) does not lead to potent activation of the apoptotic caspases, nor is the ensuing cell death prevented by inhibiting the previously established pathways of programmed cell death. Consistent with the fact that ironomycin and BH3 mimetics induce MOMP through independent nonredundant pathways, we find that ironomycin exhibits marked in vitro and in vivo synergy with venetoclax and overcomes venetoclax resistance in primary patient samples.Significance:Ironomycin couples targeting of cellular metabolism with cell death by reducing mitochondrial iron, resulting in the alteration of mitochondrial metabolism and the activation of BAX/BAK. Ironomycin induces MOMP through a different mechanism to BH3 mimetics, and consequently combination therapy has marked synergy in cancers such as acute myeloid leukemia.This article is highlighted in the In This Issue feature, p. 587
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- 2023
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6. Supplementary movie from Pharmacologic Reduction of Mitochondrial Iron Triggers a Noncanonical BAX/BAK-Dependent Cell Death
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Mark A. Dawson, Raphaël Rodriguez, Kate McArthur, Andrew H. Wei, David C.S. Huang, Kristin K. Brown, Andrew G. Cox, Georg Ramm, Sarah-Jane Dawson, Estelle Duprez, Mathilde Poplineau, Giovanna Pomilio, Véronique Litalien, Marian L. Burr, Tatiana Cañeque, Enid Y.N. Lam, Brian Liddicoat, Laura MacPherson, Lorey Smith, Kevin Tran, Kah Lok Chan, James A. Kuzich, Caitlin L. Rowe, Ali Motazedian, Yih-Chih Chan, Fiona C. Brown, Sebastian Müller, Andrew A. Guirguis, and Sylvain Garciaz
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Supplementary movie from Pharmacologic Reduction of Mitochondrial Iron Triggers a Noncanonical BAX/BAK-Dependent Cell Death
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- 2023
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7. Supplementary Data from Pharmacologic Reduction of Mitochondrial Iron Triggers a Noncanonical BAX/BAK-Dependent Cell Death
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Mark A. Dawson, Raphaël Rodriguez, Kate McArthur, Andrew H. Wei, David C.S. Huang, Kristin K. Brown, Andrew G. Cox, Georg Ramm, Sarah-Jane Dawson, Estelle Duprez, Mathilde Poplineau, Giovanna Pomilio, Véronique Litalien, Marian L. Burr, Tatiana Cañeque, Enid Y.N. Lam, Brian Liddicoat, Laura MacPherson, Lorey Smith, Kevin Tran, Kah Lok Chan, James A. Kuzich, Caitlin L. Rowe, Ali Motazedian, Yih-Chih Chan, Fiona C. Brown, Sebastian Müller, Andrew A. Guirguis, and Sylvain Garciaz
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Supplementary Data from Pharmacologic Reduction of Mitochondrial Iron Triggers a Noncanonical BAX/BAK-Dependent Cell Death
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- 2023
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8. Supplementary Figure from Pharmacologic Reduction of Mitochondrial Iron Triggers a Noncanonical BAX/BAK-Dependent Cell Death
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Mark A. Dawson, Raphaël Rodriguez, Kate McArthur, Andrew H. Wei, David C.S. Huang, Kristin K. Brown, Andrew G. Cox, Georg Ramm, Sarah-Jane Dawson, Estelle Duprez, Mathilde Poplineau, Giovanna Pomilio, Véronique Litalien, Marian L. Burr, Tatiana Cañeque, Enid Y.N. Lam, Brian Liddicoat, Laura MacPherson, Lorey Smith, Kevin Tran, Kah Lok Chan, James A. Kuzich, Caitlin L. Rowe, Ali Motazedian, Yih-Chih Chan, Fiona C. Brown, Sebastian Müller, Andrew A. Guirguis, and Sylvain Garciaz
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Supplementary Figure from Pharmacologic Reduction of Mitochondrial Iron Triggers a Noncanonical BAX/BAK-Dependent Cell Death
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- 2023
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9. Targeting Menin disrupts the KMT2A/B and polycomb balance to paradoxically activate bivalent genes
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Christina E. Sparbier, Andrea Gillespie, Juliana Gomez, Nishi Kumari, Ali Motazedian, Kah Lok Chan, Charles C. Bell, Omer Gilan, Yih-Chih Chan, Sarah Popp, Daniel J. Gough, Melanie A. Eckersley-Maslin, Sarah-Jane Dawson, Paul J. Lehner, Kate D. Sutherland, Patricia Ernst, Gerard M. McGeehan, Enid Y. N. Lam, Marian L. Burr, and Mark A. Dawson
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Cell Biology - Published
- 2023
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10. Brief report: Reclassifying SCLC-Y as SMARCA4 deficient malignancies - resolving the controversy
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Jin Ng, Ling Cai, Luc Girard, Owen W.J. Prall, Neeha Rajan, Christine Khoo, Ahida Batrouney, Ariena Kersbergen, Michael Christie, John D. Minna, Marian L. Burr, and Kate D. Sutherland
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IntroductionThe classification of small cell lung cancer (SCLC) into distinct molecular subtypes defined by ASCL1, NEUROD1, POU2F3 or YAP1 expression, paves the way for the development of targeted therapeutics. However, the existence of a distinct YAP1-expressing SCLC subtype remains controversial. Here we have undertaken a detailed molecular and histological characterisation of YAP1 expressing SCLC-Y to understand the biology of this proposed subtype.MethodsThe mutational landscape of human SCLC cell lines was interrogated to identify pathogenic genomic alterations unique to SCLC-Y. Xenograft tumours generated from cell lines representing the molecular subtypes of SCLC (SCLC-A, -N, -P and -Y) were evaluated by a panel of pathologists. Diagnoses were validated by transcriptomic analysis of primary tumour and human cell line datasets.ResultsUnexpectedly, pathogenic mutations in SMARCA4 were identified in six of eight SCLC-Y cell lines and correlated with reduced SMARCA4 mRNA and protein expression. Pathologist evaluations revealed that SMARCA4-deficient SCLC-Y tumours exhibited features consistent with thoracic SMARCA4-deficient undifferentiated tumours (SMARCA4-UT). Similarly, the transcriptional profile SMARCA4-mutant SCLC-Y lines more closely resembled primary SMARCA4-UT, or SMARCA4-deficient non-small cell carcinoma, than SCLC. Combining clinical, pathological, transcriptomic, and genetic data we found little evidence to support a diagnosis of SCLC for any of the YAP1-expressing cell lines originally used to define the SCLC-Y subtype.ConclusionsSCLC-Y cell lines harbour inactivatingSMARCA4mutations and exhibit characteristics consistent with SMARCA4-deficient malignancies rather than SCLC. Our findings suggest that, unlike ASCL1, NEUROD1 and POU2F3, YAP1 is not a subtype defining transcription factor in SCLC.
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- 2022
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11. SP142 PD-L1 Scoring Shows High Interobserver and Intraobserver Agreement in Triple-negative Breast Carcinoma But Overall Low Percentage Agreement With Other PD-L1 Clones SP263 and 22C3
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Beena Kumar, David Clouston, Kate Harvey, Jia-Min B Pang, Jane Beith, Jane E. Armes, Sunil R. Lakhani, Shona Hendry, Christina I. Selinger, Stephen B. Fox, Charles Chan, Wendy A. Raymond, Wendy A Cooper, Samuel Roberts-Thomson, Marian L. Burr, Peter Button, David J Byrne, Sandra A O'Toole, Ewan K.A. Millar, Vanathi Sivasubramaniam, and Belinda Castles
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Adult ,PD-L1 ,Oncology ,medicine.medical_specialty ,Concordance ,Triple Negative Breast Neoplasms ,B7-H1 Antigen ,Pathology and Forensic Medicine ,Breast cancer ,Atezolizumab ,Internal medicine ,Biomarkers, Tumor ,Humans ,Medicine ,Triple-negative breast cancer ,Aged ,Aged, 80 and over ,Observer Variation ,business.industry ,BRCA mutation ,Antibodies, Monoclonal ,Original Articles ,Middle Aged ,medicine.disease ,Immunohistochemistry ,SP142 ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,triple-negative breast cancer ,Female ,Surgery ,Triple-Negative Breast Carcinoma ,Anatomy ,business ,Breast carcinoma - Abstract
Supplemental Digital Content is available in the text., SP142 programmed cell death ligand 1 (PD-L1) status predicts response to atezolizumab in triple-negative breast carcinoma (TNBC). Prevalence of VENTANA PD-L1 (SP142) Assay positivity, concordance with the VENTANA PD-L1 (SP263) Assay and Dako PD-L1 IHC 22C3 pharmDx assay, and association with clinicopathologic features were assessed in 447 TNBCs. SP142 PD-L1 intraobserver and interobserver agreement was investigated in a subset of 60 TNBCs, with scores enriched around the 1% cutoff. The effect of a 1-hour training video on pretraining and posttraining scores was ascertained. At a 1% cutoff, 34.2% of tumors were SP142 PD-L1 positive. SP142 PD-L1 positivity was significantly associated with tumor-infiltrating lymphocytes (P
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- 2021
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12. Pharmacologic Reduction of Mitochondrial Iron Triggers a Noncanonical BAX/BAK-Dependent Cell Death
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Andrew H. Wei, Kevin Tran, Kristin K. Brown, Fiona C. Brown, Caitlin L. Rowe, Tatiana Cañeque, Ali Motazedian, Sebastian Müller, Giovanna Pomilio, Raphaël Rodriguez, Andrew G. Cox, Kate McArthur, Mathilde Poplineau, Marian L. Burr, Enid Y.N. Lam, Sylvain Garciaz, Mark A. Dawson, Lorey K. Smith, Brian Liddicoat, Georg Ramm, Estelle Duprez, Kah Lok Chan, Yih-Chih Chan, Sarah-Jane Dawson, Andrew A Guirguis, James Anton Kuzich, Veronique Litalien, David C.S. Huang, Laura MacPherson, University of Melbourne, Centre de Recherche en Cancérologie de Marseille (CRCM), Aix Marseille Université (AMU)-Institut Paoli-Calmettes, Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Fédération nationale des Centres de lutte contre le Cancer (FNCLCC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Institut Paoli-Calmettes, Fédération nationale des Centres de lutte contre le Cancer (FNCLCC), Chimie biologique des membranes et ciblage thérapeutique (CBMCT - UMR 3666 / U1143), Institut Curie [Paris]-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Monash University [Melbourne], The Walter and Eliza Hall Institute of Medical Research (WEHI), and Duprez, Estelle
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Programmed cell death ,Iron ,Apoptosis ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,[SDV.BBM.BM] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,[SDV.CAN] Life Sciences [q-bio]/Cancer ,In vivo ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,Humans ,Caspase ,bcl-2-Associated X Protein ,030304 developmental biology ,0303 health sciences ,Cell Death ,biology ,Chemistry ,Venetoclax ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,Metabolism ,In vitro ,Mitochondria ,3. Good health ,Cell biology ,bcl-2 Homologous Antagonist-Killer Protein ,Oncology ,030220 oncology & carcinogenesis ,Cancer cell ,biology.protein ,[SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] - Abstract
Cancer cell metabolism is increasingly recognized as providing an exciting therapeutic opportunity. However, a drug that directly couples targeting of a metabolic dependency with the induction of cell death in cancer cells has largely remained elusive. Here we report that the drug-like small-molecule ironomycin reduces the mitochondrial iron load, resulting in the potent disruption of mitochondrial metabolism. Ironomycin promotes the recruitment and activation of BAX/BAK, but the resulting mitochondrial outer membrane permeabilization (MOMP) does not lead to potent activation of the apoptotic caspases, nor is the ensuing cell death prevented by inhibiting the previously established pathways of programmed cell death. Consistent with the fact that ironomycin and BH3 mimetics induce MOMP through independent nonredundant pathways, we find that ironomycin exhibits marked in vitro and in vivo synergy with venetoclax and overcomes venetoclax resistance in primary patient samples. Significance: Ironomycin couples targeting of cellular metabolism with cell death by reducing mitochondrial iron, resulting in the alteration of mitochondrial metabolism and the activation of BAX/BAK. Ironomycin induces MOMP through a different mechanism to BH3 mimetics, and consequently combination therapy has marked synergy in cancers such as acute myeloid leukemia. This article is highlighted in the In This Issue feature, p. 587
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- 2022
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13. Inhibition of the CtBP complex and FBXO11 enhances MHC class II expression and anti-cancer immune responses
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Kah Lok Chan, Juliana Gomez, Chelisa Cardinez, Nishi Kumari, Christina E. Sparbier, Enid Y.N. Lam, Miriam M. Yeung, Sylvain Garciaz, James A. Kuzich, Doen Ming Ong, Fiona C. Brown, Yih-Chih Chan, Dane Vassiliadis, Elanor N. Wainwright, Ali Motazedian, Andrea Gillespie, Katie A. Fennell, Junyun Lai, Imran G. House, Laura Macpherson, Ching-Seng Ang, Sarah-Jane Dawson, Paul A. Beavis, Andrew H. Wei, Marian L. Burr, and Mark A. Dawson
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Cancer Research ,Protein-Arginine N-Methyltransferases ,F-Box Proteins ,Ubiquitin-Protein Ligases ,Histocompatibility Antigens Class II ,Lymphocyte Activation ,DNA-Binding Proteins ,Alcohol Oxidoreductases ,Leukemia, Myeloid, Acute ,Oncology ,HLA Antigens ,Recurrence ,Humans ,Transcription Factors - Abstract
There is increasing recognition of the prognostic significance of tumor cell major histocompatibility complex (MHC) class II expression in anti-cancer immunity. Relapse of acute myeloid leukemia (AML) following allogeneic stem cell transplantation (alloSCT) has recently been linked to MHC class II silencing in leukemic blasts; however, the regulation of MHC class II expression remains incompletely understood. Utilizing unbiased CRISPR-Cas9 screens, we identify that the C-terminal binding protein (CtBP) complex transcriptionally represses MHC class II pathway genes, while the E3 ubiquitin ligase complex component FBXO11 mediates degradation of CIITA, the principal transcription factor regulating MHC class II expression. Targeting these repressive mechanisms selectively induces MHC class II upregulation across a range of AML cell lines. Functionally, MHC class II
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- 2021
14. Selective targeting of BD1 and BD2 of the BET proteins in cancer and immuno-inflammation
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Peter Ernest Soden, Emma J. Roberts, Danette L. Daniels, Chun-wa Chung, Stephen John Atkinson, Paul Bamborough, Anne Marie Michon, Johanna Vappiani, Andrea C. Haynes, Massimo Petretich, Marcus Bantscheff, Miriam M. Yeung, Matthew J Bell, Sarah-Jane Dawson, Paola Grandi, Dane Vassiliadis, Simon Taylor, James Gray, Omer Gilan, Kathy Knezevic, Marjeta Urh, Matthew J Lindon, Marian L. Burr, Rab K. Prinjha, Alex Preston, Inmaculada Rioja, Mark A. Dawson, Gerard Drewes, Thilo Werner, Christopher Roland Wellaway, Emmanuel Hubert Demont, Anna K. Bassil, Nicola Harker, Thomas Gobbetti, Enid Y.N. Lam, David F. Tough, and Vinod Kumar
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Regulation of gene expression ,Male ,BRD4 ,Multidisciplinary ,Chromatin binding ,HEK 293 cells ,Prostatic Neoplasms ,Proteins ,Biology ,Article ,Chromatin ,Bromodomain ,Protein Domains ,Gene expression ,Cancer research ,Humans ,Transcription factor - Abstract
Bromodomain inhibitors revisited Bromodomain and extraterminal domain (BET) proteins contribute to the pathogenesis of cancer and immune diseases through their effects on transcriptional regulation. BET proteins contain two nearly identical bromodomains, BD1 and BD2, structural modules that have attracted great interest as targets for drug development. First-generation drugs that inhibited both BD1 and BD2 showed promising therapeutic activity in preclinical models but proved to be less efficacious in clinical trials. Gilan et al. took a different approach and designed drugs that selectively inhibited BD1 or BD2 (see the Perspective by Filippakopoulos and Knapp). They found that BD1 and BD2 inhibitors altered gene expression in different ways and that BD2 inhibitors had greater therapeutic activity than BD1 inhibitors in preclinical models of inflammation and autoimmune disease. Science , this issue p. 387 ; see also p. 367
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- 2020
15. HBO1 is required for the maintenance of leukaemia stem cells
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Melanie de Silva, Stewart D. Nuttall, Chen Fang Weng, Bin Ren, Paul Stupple, Mark A. Dawson, Annabelle Hoegl, Tim Thomas, Kathy Knezevic, Ian P. Street, George S. Vassiliou, Catalina Carrasco-Pozo, Yuqing Yang, Marnie E. Blewitt, Tracy A. Willson, Christopher J. Burns, Kah Lok Chan, Juliana Anokye, Linden J. Gearing, Thomas S. Peat, Janet Newman, Olan Dolezal, Oliver M. Dovey, Regina Surjadi, Miriam S. Butler, Laura MacPherson, Paul Yeh, Vicky M. Avery, Jonathan B. Baell, Enid Y.N. Lam, Yuxin Sun, Anne K. Voss, Nghi H. Nguyen, Ming Zhang, Matthew L. Dennis, Hendrik Falk, Rebecca A. Bilardi, Poh Sim Khoo, Marian L. Burr, Brendon J. Monahan, Miriam M. Yeung, Jarny Choi, Yih-Chih Chan, Chunaram Choudhary, Florian Grebien, Sarah-Jane Dawson, Joy Liu, David J. Leaver, Burr, Marian [0000-0002-8995-3398], Vassiliou, George [0000-0003-4337-8022], and Apollo - University of Cambridge Repository
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0301 basic medicine ,Models, Molecular ,BRD4 ,Biology ,03 medical and health sciences ,Histone H3 ,Mice ,0302 clinical medicine ,Cell Line, Tumor ,Animals ,Humans ,KAT7 ,Epigenetics ,Histone Acetyltransferases ,Multidisciplinary ,Histone acetyltransferase ,Chromatin ,Protein Structure, Tertiary ,Mice, Inbred C57BL ,Leukemia, Myeloid, Acute ,030104 developmental biology ,030220 oncology & carcinogenesis ,Acetyltransferase ,Cancer research ,biology.protein ,Neoplastic Stem Cells ,Stem cell - Abstract
Acute myeloid leukaemia (AML) is a heterogeneous disease characterized by transcriptional dysregulation that results in a block in differentiation and increased malignant self-renewal. Various epigenetic therapies aimed at reversing these hallmarks of AML have progressed into clinical trials, but most show only modest efficacy owing to an inability to effectively eradicate leukaemia stem cells (LSCs)1. Here, to specifically identify novel dependencies in LSCs, we screened a bespoke library of small hairpin RNAs that target chromatin regulators in a unique ex vivo mouse model of LSCs. We identify the MYST acetyltransferase HBO1 (also known as KAT7 or MYST2) and several known members of the HBO1 protein complex as critical regulators of LSC maintenance. Using CRISPR domain screening and quantitative mass spectrometry, we identified the histone acetyltransferase domain of HBO1 as being essential in the acetylation of histone H3 at K14. H3 acetylated at K14 (H3K14ac) facilitates the processivity of RNA polymerase II to maintain the high expression of key genes (including Hoxa9 and Hoxa10) that help to sustain the functional properties of LSCs. To leverage this dependency therapeutically, we developed a highly potent small-molecule inhibitor of HBO1 and demonstrate its mode of activity as a competitive analogue of acetyl-CoA. Inhibition of HBO1 phenocopied our genetic data and showed efficacy in a broad range of human cell lines and primary AML cells from patients. These biological, structural and chemical insights into a therapeutic target in AML will enable the clinical translation of these findings.
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- 2020
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16. Pharmacological Reduction of Mitochondrial Iron in AML Triggers a BAX/BAK Dependent Non-Canonical Cell Death Synergistic with Venetoclax
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Kevin Tran, Tatiana Cañeque, Giovanna Pomilio, Kristin K. Brown, Yih-Chih Chan, Andrew G. Cox, Kate McArthur, Veronique Litalien, Sebastian Müller, Estelle Duprez, Mark A. Dawson, Sylvain Garciaz, Brian Liddicoat, Georg Ramm, Kah-Lok Chan, Raphaël Rodriguez, Marian L. Burr, Enid Y.N. Lam, Laura MacPherson, Fiona C. Brown, Sarah-Jane Dawson, Andrew A Guirguis, David C.S. Huang, Mathilde Poplineau, and Andrew H. Wei
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Reduction (complexity) ,Programmed cell death ,chemistry.chemical_compound ,Non canonical ,Chemistry ,Venetoclax ,Immunology ,Cancer research ,Cell Biology ,Hematology ,Biochemistry - Abstract
Although the BCL2 inhibitor venetoclax have been transformative in the management of AML, therapeutic resistance and relapse are frequently observed. In light of the urgent need to uncover novel therapeutic options in AML, we sought to study the potential role of ironomycin (AM5), a recently described small molecule that induces cell death through the sequestration of lysosomal iron. To evaluate the effects of ironomycin in AML, we chose a diverse panel of AML cell lines. These data showed a potent and dose-dependent effect, on proliferation, cell cycle progression and survival at a nanomolar range. In contrast to venetoclax, the cell death induced by ironomycin did not result in potent caspase activation or PARP1 cleavage. Neither the caspase inhibitor Z-VAD-fmk nor the necroptosis inhibitor necrostatin-1 did prevent cell death. Consistent with previous observations, we found that ironomycin accumulates in the lysosomes of AML cells leading to a sequestration of iron in this organelle but inhibitors of canonical ferroptosis, including ferrostatin-1 and liproxstatin-1 failed to prevent the activity of ironomycin. To gain greater insight into the molecular mechanism of ironomycin in AML cells, we performed a genome-wide positive-selection resistance screen under ironomycin selection pressure and collected several samples for sequencing. We found nine genes whose knock out conferred resistance to the drug. Interestingly, these data implicated key components of mitochondrial metabolic pathways, including phosphoglycolate phosphatase (PGP), a central phosphatase involved in glycolysis and pentose phosphate pathway (PPP) regulation and Hexokinase 2 (HK2), the first enzyme of glycolysis. Mass-spectrometry metabolomics analyses highlighted that ironomycin treatment significantly reduced key components of the TCA cycle and consequently the reducing agent nicotinamide adenine dinucleotide (NADH) and increased the intracellular concentration of amino acids. These data were corroborated with RNAseq showing a mitochondrial stress response mediated through the Activating Transcription Factor 4 (ATF4) and its paralog Activating Transcription Factor 5 (ATF5). As mitochondria are major hubs of iron utilization for oxidative respiration, we used Mass-spectrometry to measure mitochondrial iron load. We observed a rapid and dose-dependent decrease in mitochondrial iron after treatment mirroring the iron sequestration into the lysosomes and inducing the mitochondrial dysfunction. We next examined the ultrastructural appearance of mitochondria after ironomycin using transmission electron microscopy and observed a dramatic alteration of the structural integrity of mitochondria resulting in abnormal cristae, matrix density changes and mitochondrial membrane blebbing. In cells lacking BAX and BAK, the two main effectors of mitochondrial membrane permeabilization, structural changes and cell death were almost completely rescued but cell proliferation was still markedly affected, consistent with a BAX/BAK dependent cell death following mitochondrial iron deprivation. In vivo imaging confirmed that BAX activation occurred after 30 hours of treatment and preceded cell death, but we observed some major differences with canonical apoptosis induced by venetoclax. First, the structural alterations were clearly distinct. Next, delay between MOMP and cell death was significantly longer and caspase inhibitors weakly delayed cell death. Finally, BCL2 overexpression and P53 deletion did not rescue ironomycin cell death. These non-canonical features prompted us to assess the efficacy of the combination between ironomycin and venetoclax. In vitro experiment on AML cell lines found a high synergy between the two drugs. In vivo experiments on xenotransplanted mice confirmed the efficacy of the combination, which was associated with a significant increase in mice survival in comparison with the controls (Figure). Finally, primary AML samples from patients clinically resistant or refractory to venetoclax were sensitive to ironomycin in monotherapy and even more in combination with venetoclax. These results demonstrate that the novel mechanism of ironomycin action can be leveraged to resensitize AML cells to venetoclax and substitute for cytotoxic drugs as a more effective therapeutic combination in the salvage setting. Figure 1 Figure 1. Disclosures Huang: The Walter and Eliza Hall Institute of Medical Research: Patents & Royalties: Employee of the Walter and Eliza Hall Institute and eligilble for payments in relation to venetoclax. Wei: Novartis, Celgene, AbbVie, Servier, AstraZeneca, and Amgen: Research Funding; Novartis, Janssen, Amgen, Roche, Pfizer, Abbvie, Servier, BMS, Macrogenics, Agios, Gilead: Membership on an entity's Board of Directors or advisory committees; Astellas: Honoraria.
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- 2021
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17. CMTM6 maintains the expression of PD-L1 and regulates anti-tumour immunity
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Phillip K. Darcy, Katherine Woods, Paul J. Lehner, Stuart Bloor, Andreas Behren, Marian L. Burr, Yih-Chih Chan, Michael C. Bassik, Paul A. Beavis, Melissa A. Henderson, Christina E. Sparbier, Sabine Stolzenburg, Mark A. Dawson, Joseph A. Trapani, Sarah-Jane Dawson, Omer Gilan, Jonathan Cebon, Ilia Voskoboinik, James C Williamson, Tahereh Noori, Charles C. Bell, David W. Morgens, Enid Y.N. Lam, and Paul J Neeson
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0301 basic medicine ,Multidisciplinary ,Endosome ,T cell ,Regulator ,Biology ,Article ,Immune checkpoint ,Cell biology ,Immunosurveillance ,03 medical and health sciences ,030104 developmental biology ,medicine.anatomical_structure ,Cancer cell ,MHC class I ,biology.protein ,medicine ,B7-H1 Antigen - Abstract
Cancer cells exploit the expression of the programmed death-1 (PD-1) ligand 1 (PD-L1) to subvert T-cell mediated immunosurveillance1,2. The success of therapies that disrupt PD-L1 mediated tumour tolerance has highlighted the need to understand the molecular regulation of PD-L1 expression1. Using a genome-wide CRISPR/Cas9 screen we identified the uncharacterized protein CMTM6 to be a critical regulator of PD-L1 in a broad range of cancer cells. CMTM6 is a ubiquitously expressed, protein that binds PD-L1 and maintains its cell surface expression. CMTM6 is not required for PD-L1 maturation but co-localizes with PD-L1 at the plasma membrane and in recycling endosomes where it prevents PD-L1 from being targeted for lysosome-mediated degradation. Using a quantitative approach to profile the entire plasma membrane proteome we find that CMTM6 displays remarkable specificity for PD-L1. Importantly, CMTM6 depletion decreases PD-L1 without compromising cell surface expression of MHC Class I. CMTM6 depletion, via the reduction of PD-L1, significantly alleviates the suppression of tumour specific T-cell activity in vitro and in vivo. These findings provide novel insights into the biology of PD-L1 regulation, identify a previously unrecognised master regulator of this critical immune checkpoint and highlight a new potential therapeutic target to overcome immune evasion by tumour cells.
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- 2017
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18. Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia
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Luciano G. Martelotto, Mark A. Dawson, Paul Yeh, Jean-Christophe Marine, David L Goode, Charles C. Bell, Christopher R. Vakoc, Brandon E. Kremer, Rab K. Prinjha, Sean M. Grimmond, Enid Y.N. Lam, Olena Barbash, Laura MacPherson, Helai P. Mohammad, Chun Yew Fong, Nathan Pinnawala, Timothy M. Johanson, Katie A Fennell, Aljosja Rogiers, Marian L. Burr, Sarah-Jane Dawson, Florian Rambow, Ryan G. Kruger, Shalin H. Naik, Yih-Chih Chan, Anthony T. Papenfuss, Dane Vassiliadis, Rhys S. Allan, Luis Lara, Junwei Shi, Omer Gilan, Arindam Dhar, Luyi Tian, Natalie Karpinich, Miriam M. Yeung, Dean Tyler, Bell, Charles C [0000-0003-2194-8311], Chan, Yih-Chih [0000-0003-2177-5406], Yeung, Miriam M [0000-0002-9455-1887], Vassiliadis, Dane [0000-0002-7814-4851], Burr, Marian L [0000-0002-8995-3398], Tian, Luyi [0000-0003-3420-3685], Shi, Junwei [0000-0002-8427-6316], Grimmond, Sean M [0000-0002-8102-7998], Dawson, Sarah-Jane [0000-0002-8276-0374], Allan, Rhys S [0000-0003-0906-2980], Naik, Shalin H [0000-0003-0299-3301], Lam, Enid YN [0000-0001-5843-7836], Prinjha, Rab K [0000-0002-2666-3326], Dawson, Mark A [0000-0002-5464-5029], and Apollo - University of Cambridge Repository
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0301 basic medicine ,CHROMATIN ,Transcription, Genetic ,TRANSCRIPTIONAL PROGRAM ,General Physics and Astronomy ,02 engineering and technology ,Drug resistance ,Kaplan-Meier Estimate ,Epigenesis, Genetic ,Mice ,Single-cell analysis ,Bone Marrow ,PLASTICITY ,lcsh:Science ,Regulation of gene expression ,Multidisciplinary ,Gene Expression Regulation, Leukemic ,021001 nanoscience & nanotechnology ,CLONAL EVOLUTION ,CANCER ,Chromatin ,3. Good health ,Multidisciplinary Sciences ,Leukemia, Myeloid, Acute ,Treatment Outcome ,Mechanisms of disease ,Science & Technology - Other Topics ,Female ,Epigenetics ,Single-Cell Analysis ,0210 nano-technology ,STEM-CELLS ,BRD4 ,Science ,Antineoplastic Agents ,Computational biology ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,Cell Line, Tumor ,Animals ,Humans ,Enhancer ,Haematological cancer ,Science & Technology ,Sequence Analysis, RNA ,MUTATIONS ,Pioneer factor ,PU.1 ,General Chemistry ,DNA ,Xenograft Model Antitumor Assays ,Gene regulation ,Mice, Inbred C57BL ,030104 developmental biology ,HEK293 Cells ,MAINTENANCE ,Drug Resistance, Neoplasm ,Trans-Activators ,lcsh:Q ,IRF8 ,CRISPR-Cas Systems - Abstract
Non-genetic drug resistance is increasingly recognised in various cancers. Molecular insights into this process are lacking and it is unknown whether stable non-genetic resistance can be overcome. Using single cell RNA-sequencing of paired drug naïve and resistant AML patient samples and cellular barcoding in a unique mouse model of non-genetic resistance, here we demonstrate that transcriptional plasticity drives stable epigenetic resistance. With a CRISPR-Cas9 screen we identify regulators of enhancer function as important modulators of the resistant cell state. We show that inhibition of Lsd1 (Kdm1a) is able to overcome stable epigenetic resistance by facilitating the binding of the pioneer factor, Pu.1 and cofactor, Irf8, to nucleate new enhancers that regulate the expression of key survival genes. This enhancer switching results in the re-distribution of transcriptional co-activators, including Brd4, and provides the opportunity to disable their activity and overcome epigenetic resistance. Together these findings highlight key principles to help counteract non-genetic drug resistance., There is increasing evidence that epigenetic mechanisms contribute to therapeutic resistance in cancer. Here the authors study AML patient samples and a mouse model of non-genetic resistance and find that transcriptional plasticity drives stable epigenetic resistance, and identify regulators of enhancer function as important modulators of resistance.
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- 2019
19. The roles of DNA, RNA and histone methylation in ageing and cancer
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Mark A. Dawson, Andrew J. Bannister, Marian L. Burr, and Ewa M. Michalak
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Regulation of gene expression ,0303 health sciences ,DNA repair ,Cell Biology ,Computational biology ,Methylation ,DNA, Neoplasm ,Biology ,DNA Methylation ,Chromatin ,Neoplasm Proteins ,Histones ,03 medical and health sciences ,0302 clinical medicine ,Histone ,Neoplasms ,Histone methylation ,DNA methylation ,biology.protein ,Epigenetics ,RNA, Neoplasm ,RNA Processing, Post-Transcriptional ,Molecular Biology ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
Chromatin is a macromolecular complex predominantly comprising DNA, histone proteins and RNA. The methylation of chromatin components is highly conserved as it helps coordinate the regulation of gene expression, DNA repair and DNA replication. Dynamic changes in chromatin methylation are essential for cell-fate determination and development. Consequently, inherited or acquired mutations in the major factors that regulate the methylation of DNA, RNA and/or histones are commonly observed in developmental disorders, ageing and cancer. This has provided the impetus for the clinical development of epigenetic therapies aimed at resetting the methylation imbalance observed in these disorders. In this Review, we discuss the cellular functions of chromatin methylation and focus on how this fundamental biological process is corrupted in cancer. We discuss methylation-based cancer therapies and provide a perspective on the emerging data from early-phase clinical trial therapies that target regulators of DNA and histone methylation. We also highlight promising therapeutic strategies, including monitoring chromatin methylation for diagnostic purposes and combination epigenetic therapy strategies that may improve immune surveillance in cancer and increase the efficacy of conventional and targeted anticancer drugs.
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- 2019
20. 297P SP142 immunohistochemistry (IHC) PD-L1 inter- and intra-pathologist agreement in triple negative breast carcinoma (TNBC)
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Sandra A O'Toole, J-M. Pang, Ewan K.A. Millar, Beena Kumar, Vanathi Sivasubramaniam, Marian L. Burr, Kate Harvey, Jane Beith, Wendy A. Raymond, Charles Chan, Belinda Castles, P. Button, Stephen B. Fox, Wendy A Cooper, Sunil R. Lakhani, Samuel Roberts-Thomson, Christina I. Selinger, David J Byrne, and J. Armes
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Pathology ,medicine.medical_specialty ,Oncology ,biology ,business.industry ,PD-L1 ,biology.protein ,Immunohistochemistry ,Medicine ,Triple-Negative Breast Carcinoma ,Hematology ,business - Published
- 2020
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21. MHC class I molecules are preferentially ubiquitinated on endoplasmic reticulum luminal residues during HRD1 ubiquitin E3 ligase-mediated dislocation
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Robin Antrobus, Helen Bye, Paul J. Lehner, Emmanuel J. H. J. Wiertz, Dick J. H. van den Boomen, and Marian L. Burr
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Adenosine Triphosphatases ,Multidisciplinary ,Base Sequence ,biology ,Ubiquitin ,Ubiquitin-Protein Ligases ,Endoplasmic reticulum ,Histocompatibility Antigens Class I ,Ubiquitination ,Nuclear Proteins ,Transporter associated with antigen processing ,Biological Sciences ,Endoplasmic-reticulum-associated protein degradation ,Ubiquitin-conjugating enzyme ,Endoplasmic Reticulum ,Ubiquitin ligase ,Cell biology ,Biochemistry ,MHC class I ,biology.protein ,Humans ,Integral membrane protein ,HeLa Cells - Abstract
Misfolded MHC class I heavy chains (MHC I HCs) are targeted for endoplasmic reticulum (ER)-associated degradation (ERAD) by the ubiquitin E3 ligase HRD1, and E2 ubiquitin conjugating enzyme UBE2J1, and represent one of the few known endogenous ERAD substrates. The mechanism by which misfolded proteins are dislocated across the ER membrane into the cytosol is unclear. Here, we investigate the requirements for MHC I ubiquitination and degradation and show that endogenous misfolded MHC I HCs are recognized in the ER lumen by EDEM1 in a glycan-dependent manner and targeted to the core SEL1L/HRD1/UBE2J1 complex. A soluble MHC I HC lacking its transmembrane domain and cytosolic tail uses the same ERAD components and is degraded as efficiently as wild-type MHC I. Unexpectedly, HRD1-dependent polyubiquitination is preferentially targeted to the ER luminal domain of full-length MHC I HCs, despite the presence of an exposed cytosolic C-terminal tail. MHC I luminal domain ubiquitination occurs before p97 ATPase-mediated extraction from the ER membrane and can be targeted to nonlysine, as well as lysine, residues. A subset of integral membrane proteins, therefore, requires an early dislocation event to expose part of their luminal domain to the cytosol, before HRD1-mediated polyubiquitination and dislocation.
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- 2013
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22. Tapasin-related protein TAPBPR is an additional component of the MHC class I presentation pathway
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Jessica M. Boname, Clemens Hermann, Keith M. Porter, Paul J. Lehner, John Trowsdale, Marian L. Burr, Karsten Skjødt, Michael E. Harbour, Peysh A. Patel, Louise H. Boyle, David Rhodes, and Lidia M. Duncan
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Calnexin ,Antigen presentation ,Protein Disulfide-Isomerases ,Golgi Apparatus ,Immunoglobulins ,chemical and pharmacologic phenomena ,Endoplasmic Reticulum ,Interferon-gamma ,Tapasin ,MHC class I ,Humans ,Secretory pathway ,Antigen Presentation ,Multidisciplinary ,HLA-A Antigens ,biology ,Beta-2 microglobulin ,Histocompatibility Antigens Class I ,Membrane Proteins ,Membrane Transport Proteins ,Transporter associated with antigen processing ,Biological Sciences ,Cell biology ,Kinetics ,Protein Transport ,HEK293 Cells ,biology.protein ,Protein Multimerization ,Calreticulin ,Peptides ,beta 2-Microglobulin ,HeLa Cells ,Protein Binding - Abstract
Tapasin is an integral component of the peptide-loading complex (PLC) important for efficient peptide loading onto MHC class I molecules. We investigated the function of the tapasin-related protein, TAPBPR. Like tapasin, TAPBPR is widely expressed, IFN-γ–inducible, and binds to MHC class I coupled with β2-microglobulin in the endoplasmic reticulum. In contrast to tapasin, TAPBPR does not bind ERp57 or calreticulin and is not an integral component of the PLC. β2-microglobulin is essential for the association between TAPBPR and MHC class I. However, the association between TAPBPR and MHC class I occurs in the absence of a functional PLC, suggesting peptide is not required. Expression of TAPBPR decreases the rate of MHC class I maturation through the secretory pathway and prolongs the association of MHC class I on the PLC. The TAPBPR:MHC class I complex trafficks through the Golgi apparatus, demonstrating a function of TAPBPR beyond the endoplasmic reticulum/cis-Golgi. The identification of TAPBPR as an additional component of the MHC class I antigen-presentation pathway demonstrates that mechanisms controlling MHC class I expression remain incompletely understood.
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- 2013
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23. PADI4 genotype is not associated with rheumatoid arthritis in a large UK Caucasian population
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John Bowes, Haris Naseem, David M. Reid, Ann W. Morgan, James R Maxwell, Steve Eyre, Marian L. Burr, Pille Harrison, Sophia Steer, Anne Hinks, Paul Emery, Wendy Thomson, Anthony G. Wilson, Lynne J. Hocking, Paul Wordsworth, Anne Barton, Jane Worthington, and Laura J. Gibbons
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Male ,musculoskeletal diseases ,Oncology ,medicine.medical_specialty ,Genotype ,Hydrolases ,Immunology ,Population ,Single-nucleotide polymorphism ,Genome-wide association study ,Polymorphism, Single Nucleotide ,White People ,General Biochemistry, Genetics and Molecular Biology ,Arthritis, Rheumatoid ,PTPN22 ,03 medical and health sciences ,0302 clinical medicine ,Gene Frequency ,Protein-Arginine Deiminase Type 4 ,Rheumatology ,Internal medicine ,Humans ,Immunology and Allergy ,Medicine ,Genetic Predisposition to Disease ,education ,Allele frequency ,Autoantibodies ,030304 developmental biology ,030203 arthritis & rheumatology ,0303 health sciences ,education.field_of_study ,business.industry ,Haplotype ,Clinical and Epidemiological Research ,3. Good health ,PADI4 ,Protein-Arginine Deiminases ,Female ,Epidemiologic Methods ,business - Abstract
Background Polymorphisms of the peptidylarginine deiminase type 4 ( PADI4 ) gene confer susceptibility to rheumatoid arthritis (RA) in East Asian people. However, studies in European populations have produced conflicting results. This study explored the association of the PADI4 genotype with RA in a large UK Caucasian population. Methods The PADI4_94 (rs2240340) single nucleotide polymorphism (SNP) was directly genotyped in a cohort of unrelated UK Caucasian patients with RA (n=3732) and population controls (n=3039). Imputed data from the Wellcome Trust Case Control Consortium (WTCCC) was used to investigate the association of PADI4_94 with RA in an independent group of RA cases (n=1859) and controls (n=10 599). A further 56 SNPs spanning the PADI4 gene were investigated for association with RA using data from the WTCCC study. Results The PADI4_94 genotype was not associated with RA in either the present cohort or the WTCCC cohort. Combined analysis of all the cases of RA (n=5591) and controls (n=13 638) gave an overall OR of 1.01 (95% CI 0.96 to 1.05, p=0.72). No association with anti-CCP antibodies and no interaction with either shared epitope or PTPN22 was detected. No evidence for association with RA was identified for any of the PADI4 SNPs investigated. Meta-analysis of previously published studies and our data confirmed no significant association between the PADI4_94 genotype and RA in people of European descent (OR 1.06, 95% CI 0.99 to 1.13, p=0.12). Conclusion In the largest study performed to date, the PADI4 genotype was not a significant risk factor for RA in people of European ancestry, in contrast to Asian populations.
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- 2016
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24. An Evolutionarily Conserved Function of Polycomb Silences the MHC Class I Antigen Presentation Pathway and Enables Immune Evasion in Cancer
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Kate D. Sutherland, Carleen Cullinane, Hannah V. Siddle, Ewa M. Michalak, Rab K. Prinjha, Ariena Kersbergen, Sarah-Jane Dawson, Omer Gilan, Lavinia Tan, Sebastian Hollizeck, Paul J. Lehner, Christina E. Sparbier, Benjamin Solomon, Elizabeth Azidis-Yates, Susan Jackson, Kah Lok Chan, Marian L. Burr, Yih-Chih Chan, Richard W. Tothill, Mark A. Dawson, Shahneen Sandhu, Dane Vassiliadis, Stephen Q. Wong, Charles C. Bell, Enid Y.N. Lam, Glen R. Guerra, Paul A. Beavis, Michael T. McCabe, Burr, Marian [0000-0002-8995-3398], Lehner, Paul [0000-0001-9383-1054], and Apollo - University of Cambridge Repository
- Subjects
0301 basic medicine ,Cancer Research ,T-Lymphocytes ,CD8-Positive T-Lymphocytes ,Mice ,0302 clinical medicine ,Antineoplastic Agents, Immunological ,Neoplasms ,Antineoplastic Combined Chemotherapy Protocols ,health care economics and organizations ,Antigen Presentation ,Antigen processing ,histone methyltransferase ,Polycomb Repressive Complex 2 ,Middle Aged ,3. Good health ,Cell biology ,Gene Expression Regulation, Neoplastic ,Histone Code ,Oncology ,030220 oncology & carcinogenesis ,MHC class I ,bivalency ,Female ,immunotherapy ,PRC2 ,Bivalent chromatin ,epigenetic repression ,Antigen presentation ,education ,Down-Regulation ,chemical and pharmacologic phenomena ,Biology ,Major histocompatibility complex ,Article ,03 medical and health sciences ,Cell Line, Tumor ,Gene silencing ,Animals ,cancer ,Humans ,EZH2 ,Immune Evasion ,MHC class I antigen ,Histocompatibility Antigens Class I ,Cell Biology ,DNA Methylation ,Xenograft Model Antitumor Assays ,030104 developmental biology ,Drug Resistance, Neoplasm ,biology.protein ,Tumor Escape ,polycomb ,T-Lymphocytes, Cytotoxic - Abstract
Summary Loss of MHC class I (MHC-I) antigen presentation in cancer cells can elicit immunotherapy resistance. A genome-wide CRISPR/Cas9 screen identified an evolutionarily conserved function of polycomb repressive complex 2 (PRC2) that mediates coordinated transcriptional silencing of the MHC-I antigen processing pathway (MHC-I APP), promoting evasion of T cell-mediated immunity. MHC-I APP gene promoters in MHC-I low cancers harbor bivalent activating H3K4me3 and repressive H3K27me3 histone modifications, silencing basal MHC-I expression and restricting cytokine-induced upregulation. Bivalent chromatin at MHC-I APP genes is a normal developmental process active in embryonic stem cells and maintained during neural progenitor differentiation. This physiological MHC-I silencing highlights a conserved mechanism by which cancers arising from these primitive tissues exploit PRC2 activity to enable immune evasion., Graphical Abstract, Highlights • PRC2 maintains bivalency at MHC-I antigen-processing genes silencing MHC-I expression • Cancer cells co-opt this conserved, lineage-specific PRC2 function to evade T cells • Pharmacological inhibition of PRC2 in MHC-I low cancers restores anti-tumor immunity • Immunotherapy resistance may arise via non-genomic routes that exploit PRC2 activity, Burr et al. show that cancer cells co-opt PRC2 to evade immune surveillance. PRC2 maintains bivalency at the promoters of MHC-I antigen-processing pathway (MHC-I APP) genes to repress their basal and cytokine-activated expression. Inhibition of PRC2 restores the MHC-I APP and T cell-mediated anti-tumor immunity.
- Published
- 2019
25. Studying ubiquitination of MHC class I molecules
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Marian L, Burr, Jessica M, Boname, and Paul J, Lehner
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Protein Denaturation ,Viral Proteins ,Histocompatibility Antigens Class I ,Immunoblotting ,Ubiquitination ,Humans ,Immunoprecipitation ,Electrophoresis, Polyacrylamide Gel ,Membranes, Artificial ,Cell Separation ,HeLa Cells - Abstract
The covalent attachment of ubiquitin to a protein is one of the most common post-translational modifications and regulates diverse eukaryotic cellular processes. Ubiquitination of MHC class I was first described in the context of viral proteins which target MHC class I for degradation in the endoplasmic reticulum and at the cell surface. Study of viral-induced MHC class I degradation has been extremely instructive in elucidating cellular pathways for degradation of membrane and secretory proteins. More recently, ubiquitination of endogenous MHC class I heavy chains which fail to achieve their native conformation and undergo endoplasmic-reticulum associated degradation has been demonstrated.In this chapter we describe methods for identification of endogenous ubiquitinated MHC class I heavy chains by MHC class I-immunoprecipitation and ubiquitin-specific immunoblot or by metabolic labeling and immunoprecipitation.
- Published
- 2013
26. Studying Ubiquitination of MHC Class I Molecules
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Jessica M. Boname, Paul J. Lehner, and Marian L. Burr
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biology ,Immunoprecipitation ,Chemistry ,Endoplasmic reticulum ,Cell ,chemical and pharmacologic phenomena ,Context (language use) ,Cell biology ,medicine.anatomical_structure ,Secretory protein ,Ubiquitin ,MHC class I ,biology.protein ,medicine ,Native state - Abstract
The covalent attachment of ubiquitin to a protein is one of the most common post-translational modifications and regulates diverse eukaryotic cellular processes. Ubiquitination of MHC class I was first described in the context of viral proteins which target MHC class I for degradation in the endoplasmic reticulum and at the cell surface. Study of viral-induced MHC class I degradation has been extremely instructive in elucidating cellular pathways for degradation of membrane and secretory proteins. More recently, ubiquitination of endogenous MHC class I heavy chains which fail to achieve their native conformation and undergo endoplasmic-reticulum associated degradation has been demonstrated.In this chapter we describe methods for identification of endogenous ubiquitinated MHC class I heavy chains by MHC class I-immunoprecipitation and ubiquitin-specific immunoblot or by metabolic labeling and immunoprecipitation.
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- 2012
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27. Long-term stability of anti-cyclic citrullinated peptide antibody status in patients with early inflammatory polyarthritis
- Author
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Darren Plant, Deborah P M Symmons, Marian L. Burr, Marwan Bukhari, Wendy Thomson, Sebastien Viatte, Anne Barton, Burr, Marian [0000-0002-8995-3398], and Apollo - University of Cambridge Repository
- Subjects
musculoskeletal diseases ,Male ,medicine.medical_specialty ,Immunology ,Arthritis ,Disease ,Gastroenterology ,Peptides, Cyclic ,Arthritis, Rheumatoid ,03 medical and health sciences ,0302 clinical medicine ,Rheumatology ,immune system diseases ,Internal medicine ,Rheumatoid factor ,Medicine ,Immunology and Allergy ,Humans ,skin and connective tissue diseases ,030304 developmental biology ,Autoantibodies ,030203 arthritis & rheumatology ,0303 health sciences ,biology ,business.industry ,Autoantibody ,Odds ratio ,Middle Aged ,medicine.disease ,Prognosis ,3. Good health ,Titer ,biology.protein ,Female ,Antibody ,business ,Research Article - Abstract
INTRODUCTION: The utility of reassessing anti-cyclic citrullinated peptide (anti-CCP) antibody status later in disease in patients presenting with early undifferentiated inflammatory polyarthritis, particularly in those who test negative for both anti-CCP and rheumatoid factor (RF) at baseline, remains unclear. We aimed therefore to determine the stability of CCP antibody status over time and the prognostic utility of repeated testing in subjects with early inflammatory polyarthritis (IP). METHODS: Anti-CCP and RF were measured at baseline and 5 years in 640 IP patients from the Norfolk Arthritis Register, a primary care-based inception cohort. The relation between change in anti-CCP status/titer and the presence of radiologic erosions, the extent of the Larsen score, and Health Assessment Questionnaire (HAQ) score by 5 years was investigated. RESULTS: With a cut-off of 5 U/ml, 28% subjects tested positive for anti-CCP antibodies, 29% for RF, and 21% for both at baseline. Nine (2%) anti-CCP-negative patients seroconverted to positive, and nine (4.6%) anti-CCP-positive individuals became negative between baseline and 5 years. In contrast, RF status changed in 17% of subjects. However, change in RF status was strongly linked to baseline anti-CCP status and was not independently associated with outcome. Ever positivity for anti-CCP antibodies by 5 years did not improve prediction of radiographic damage compared with baseline status alone (accuracy, 75% versus 74%). A higher baseline anti-CCP titer (but not change in anti-CCP titer) predicted worse radiologic damage at 5 years (P < 0.0001), even at levels below the cut-off for anti-CCP positivity. Thus, a titer of 2 to 5 U/ml was strongly associated with erosions by 5 years (odds ratio, 3.6 (1.5 to 8.3); P = 0.003). CONCLUSIONS: Repeated testing of anti-CCP antibodies or RF in patients with IP does not improve prognostic value and should not be recommended in routine clinical practice.
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- 2012
28. HRD1 and UBE2J1 target misfolded MHC class I heavy chains for endoplasmic reticulum-associated degradation
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Jessica M. Boname, Stanislava Svobodova, Louise H. Boyle, Marian L. Burr, Paul J. Lehner, and Florencia Cano
- Subjects
Protein Folding ,Multidisciplinary ,biology ,CD74 ,Antigen processing ,Endoplasmic reticulum ,Hydrolysis ,Ubiquitin-Protein Ligases ,Histocompatibility Antigens Class I ,Ubiquitination ,Transporter associated with antigen processing ,Endoplasmic-reticulum-associated protein degradation ,Ubiquitin-conjugating enzyme ,Biological Sciences ,Major histocompatibility complex ,Endoplasmic Reticulum ,Cell biology ,Biochemistry ,MHC class I ,Ubiquitin-Conjugating Enzymes ,biology.protein ,Humans ,RNA, Small Interfering ,HeLa Cells - Abstract
The assembly of MHC class I molecules is governed by stringent endoplasmic reticulum (ER) quality control mechanisms. MHC class I heavy chains that fail to achieve their native conformation in complex with β2-microglobulin (β2m) and peptide are targeted for ER-associated degradation. This requires ubiquitination of the MHC class I heavy chain and its dislocation from the ER to the cytosol for proteasome-mediated degradation, although the cellular machinery involved in this process is unknown. Using an siRNA functional screen in β2m-depleted cells, we identify an essential role for the E3 ligase HRD1 (Synoviolin) together with the E2 ubiquitin-conjugating enzyme UBE2J1 in the ubiquitination and dislocation of misfolded MHC class I heavy chains. HRD1 is also required for the ubiquitination and degradation of the naturally occurring hemochromatosis-associated HFE-C282Y mutant, which is unable to bind β2m. In the absence of HRD1, misfolded HLA-B27 accumulated in cells with a normal MHC class I assembly pathway, and HRD1 depletion prevented the appearance of low levels of cytosolic unfolded MHC I heavy chains. HRD1 and UBE2J1 associate in a complex together with non-β2m bound MHC class I heavy chains, Derlin 1, and p97 and discriminate misfolded MHC class I from conformational MHC I-β2m-peptide heterotrimers. Together these data support a physiological role for HRD1 and UBE2J1 in the homeostatic regulation of MHC class I assembly and expression.
- Published
- 2011
29. Metabolic myopathies: a guide and update for clinicians
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Andrew J. K. Östör, Jonathan C. P. Roos, and Marian L. Burr
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medicine.medical_specialty ,Pathology ,Purine-Pyrimidine Metabolism, Inborn Errors ,Genetic counseling ,media_common.quotation_subject ,Significant group ,MEDLINE ,Disease ,Metabolic myopathy ,Lipid Metabolism, Inborn Errors ,Diagnosis, Differential ,Presentation ,Rheumatology ,Muscular Diseases ,medicine ,Humans ,Intensive care medicine ,media_common ,Confusion ,business.industry ,Muscles ,Purine/pyrimidine metabolism ,medicine.disease ,Glycogen Storage Disease ,medicine.symptom ,business ,Energy Metabolism ,Metabolism, Inborn Errors - Abstract
PURPOSE OF REVIEW: The present review will focus on the clinical features, and recent advances in the investigation and treatment, of metabolic muscle disease. The aim is to present a summary of this vast and complex topic emphasizing key points of relevance to nonspecialists in the field. Salient examples from each category will be highlighted to illustrate characteristic features and potential sources of diagnostic confusion. The general approach to management will then be outlined. RECENT FINDINGS: Awareness of these diseases has grown over recent years, as has appreciation of their variable clinical presentation. Many of the precise genetic and biochemical abnormalities underlying these conditions have been elucidated and novel enzyme defects continue to be discovered. Perhaps the greatest progress, however, has been made in the management of disease. Advances in tandem mass spectrometry techniques have facilitated the introduction of nationwide neonatal screening programmes for a large number of metabolic disorders. Enzyme replacement in Pompe disease has proved successful, improving outcome in a hitherto untreatable condition. Progress towards gene therapy, perhaps the ultimate goal, has been made in animal models. SUMMARY: Although individually rare, the metabolic myopathies together constitute a significant group of disabling and potentially life-threatening disorders. Appropriate investigations, timely treatment and genetic counselling are paramount to ameliorate the short and long-term consequences of disease.
- Published
- 2008
30. The value of ambulatory blood pressure in older adults: the Dublin outcome study
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Eoin W O'Brien, Marian L. Burr, Eoin O'Brien, P. M. E. McCormack, and Eamon Dolan
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Male ,Aging ,medicine.medical_specialty ,Pediatrics ,Ambulatory blood pressure ,Urban Population ,Risk Assessment ,Sensitivity and Specificity ,Severity of Illness Index ,Cohort Studies ,Sex Factors ,Predictive Value of Tests ,Internal medicine ,Cause of Death ,medicine ,Confidence Intervals ,Humans ,Geriatric Assessment ,Aged ,Proportional Hazards Models ,Retrospective Studies ,Aged, 80 and over ,Proportional hazards model ,business.industry ,Hazard ratio ,Age Factors ,Reproducibility of Results ,Blood Pressure Determination ,General Medicine ,Blood Pressure Monitoring, Ambulatory ,Prognosis ,Survival Analysis ,Confidence interval ,Blood pressure ,Cardiovascular Diseases ,Predictive value of tests ,Ambulatory ,Hypertension ,Cardiology ,Female ,Geriatrics and Gerontology ,business ,Ireland ,Cohort study - Abstract
Background: ambulatory blood pressure (ABPM) appears to be a more accurate predictor of cardiovascular outcome than blood pressure (BP) measured in the clinic setting in younger adults. Objectives: the purpose of this study was to determine if ABPM predicted total and cardiovascular mortality independently of clinic BP and other cardiovascular risk factors in those aged 65 years and over. Methods: one thousand one hundred and forty-four individuals aged 65 and over referred to a single BP clinic had 24-h ABP measurement and clinic measurement at baseline off treatment. There were 385 deaths (of which 246 were cardiovascular) during a mean follow-up period of 6.7 years. Results: with adjustment for gender, age, risk indices and also for clinic BP, a higher mean value of ABPM was an independent predictor of cardiovascular mortality. The relative hazard ratio for each 10-mmHg rise in systolic blood pressure (SBP) was 1.10 (1.06‐1.18, P
- Published
- 2008
31. Rituximab in rheumatoid arthritis following anti-TNF-associated tuberculosis
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A P Malaviya, A J Carmichael, Marian L. Burr, Andrew J. K. Östör, and J. S. H. Gaston
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Tuberculosis ,biology ,business.industry ,Arthritis ,medicine.disease ,biology.organism_classification ,Mycobacterium tuberculosis ,Rheumatology ,Rheumatoid arthritis ,Monoclonal ,Immunology ,medicine ,biology.protein ,Pharmacology (medical) ,Tumor necrosis factor alpha ,Rituximab ,Antibody ,business ,medicine.drug - Published
- 2008
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32. Identifying novel ubiquitin E3 ligases in the MHC class I antigen presentation pathway
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Paul J. Lehner, Richard T. Timms, Jessica M. Boname, Lidia M. Duncan, Marian L. Burr, Felix Randow, and Florencia Cano
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Presentation ,biology ,Ubiquitin ,Antigen processing ,MHC class I antigen ,media_common.quotation_subject ,Immunology ,MHC class I ,biology.protein ,Molecular Biology ,media_common - Published
- 2012
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33. Targeting of misfolded MHC class I heavy chains for endoplasmic reticulum-associated degradation by the HRD1 ubiquitin E3 ligase complex
- Author
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Paul J. Lehner, Emmanuel J. H. J. Wiertz, Marian L. Burr, Jessica M. Boname, Stanislava Svobodova, Louise H. Boyle, and Florencia Cano
- Subjects
JUNQ and IPOD ,Ubiquitin ,biology ,Chemistry ,Immunology ,MHC class I ,biology.protein ,Endoplasmic-reticulum-associated protein degradation ,Molecular Biology ,Cell biology ,Ubiquitin ligase - Published
- 2012
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34. The tapasin-related protein TAPBPR modulates the ER export rate of MHC class I
- Author
-
David A. Rhodes, Peysh A. Patel, Louise H. Boyle, Jessica M. Boname, Paul J. Lehner, Marian L. Burr, Keith M. Porter, and John Trowsdale
- Subjects
biology ,Chemistry ,Immunology ,MHC class I ,biology.protein ,Molecular Biology ,TAPASIN-RELATED PROTEIN ,Cell biology - Published
- 2012
- Full Text
- View/download PDF
Catalog
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