27 results on '"Maria F. Suarez"'
Search Results
2. Cyclin A triggers Mitosis either via the Greatwall kinase pathway or Cyclin B
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Tony Ly, Adrijana Crncec, Chris Bakal, Maria F. Suarez Peredo Rodriguez, Paul F. Lang, Bela Novak, Oliver Busby, Nadia Hégarat, Fabio Echegaray Iturra, Alexis R. Barr, Helfrid Hochegger, Masato T. Kanemaki, Yan Gu, and Angus I. Lamond
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Cell division ,MASTL ,NUCLEAR-ENVELOPE BREAKDOWN ,Cyclin A ,Cyclin B ,environment and public health ,ACTIVATION ,0302 clinical medicine ,Protein Phosphatase 2 ,PHOSPHORYLATION ,11 Medical and Health Sciences ,Cyclin ,0303 health sciences ,biology ,Kinase ,General Neuroscience ,Cell Cycle ,Articles ,PP2A ,Cell biology ,SUBSTRATE DEPHOSPHORYLATION ,PLK1 ,Life Sciences & Biomedicine ,Biochemistry & Molecular Biology ,Cdk1 ,Mitosis ,Article ,General Biochemistry, Genetics and Molecular Biology ,Cell Line ,03 medical and health sciences ,REVEALS ,CDC2 Protein Kinase ,Humans ,Molecular Biology ,030304 developmental biology ,Cyclin-dependent kinase 1 ,Science & Technology ,General Immunology and Microbiology ,Greatwall ,Cell Biology ,DNA ,Protein phosphatase 2 ,06 Biological Sciences ,SIGNAL ,enzymes and coenzymes (carbohydrates) ,CELLS ,biology.protein ,08 Information and Computing Sciences ,030217 neurology & neurosurgery ,Developmental Biology - Abstract
Two mitotic cyclin types, cyclin A and B, exist in higher eukaryotes, but their specialised functions in mitosis are incompletely understood. Using degron tags for rapid inducible protein removal, we analyse how acute depletion of these proteins affects mitosis. Loss of cyclin A in G2‐phase prevents mitotic entry. Cells lacking cyclin B can enter mitosis and phosphorylate most mitotic proteins, because of parallel PP2A:B55 phosphatase inactivation by Greatwall kinase. The final barrier to mitotic establishment corresponds to nuclear envelope breakdown, which requires a decisive shift in the balance of cyclin‐dependent kinase Cdk1 and PP2A:B55 activity. Beyond this point, cyclin B/Cdk1 is essential for phosphorylation of a distinct subset of mitotic Cdk1 substrates that are essential to complete cell division. Our results identify how cyclin A, cyclin B and Greatwall kinase coordinate mitotic progression by increasing levels of Cdk1‐dependent substrate phosphorylation., Acute degron‐mediated depletion defines the exact roles of mitotic cyclins and related CDK1 substrate phosphorylation during initiation, progression and completion of mammalian cell division.
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- 2020
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3. Classification and nomenclature of metacaspases and paracaspases: no more confusion with caspases
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Christiane Funk, Vanina E. Alvarez, Heinz D. Osiewacz, Juan José Cazzulo, Simon Stael, Boris Zhivotovsky, Chang Jae Choi, Frank Madeo, Jens Staal, Kailash C. Pandey, Lynn A. Megeney, Yigong Shi, Magali Casanova, Andrei Smertenko, Maurício F.M. Machado, Eric Lam, Renier A. L. van der Hoorn, Juergen Ruland, Ilana Berman-Frank, Panagiotis N. Moschou, Peter V. Bozhkov, Jeremy C. Mottram, Kay D. Bidle, Jerry Ståhlberg, Rudi Beyaert, Christopher M. Overall, Frédéric Bornancin, Kris Gevaert, Margot Thome, Assaf Vardi, Núria S. Coll, Patrick Gallois, Frank Van Breusegem, Thomas Nyström, Vishva M. Dixit, Marko Dolinar, Maria F. Suarez, Stephan Hailfinger, Nicolas Fasel, Emilio Gutierrez-Beltran, John A. Berges, Anna Linusson, Hannele Tuominen, Daniel Krappmann, Guy S. Salvesen, Marina Klemenčič, Elena A. Minina, Eugene V. Koonin, Canaan, Stephane, Swedish University of Agricultural Sciences (SLU), Universiteit Gent = Ghent University (UGENT), Universidad Nacional de San Martin (UNSAM), University of Wisconsin - Milwaukee, University of Haifa [Haifa], Rutgers, The State University of New Jersey [New Brunswick] (RU), Rutgers University System (Rutgers), Novartis Institutes for BioMedical Research (NIBR), Laboratoire d'ingénierie des systèmes macromoléculaires (LISM), Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), University of Texas at Austin [Austin], Centre for Research in Agricultural Genomics (CRAG), Genentech, Inc., Genentech, Inc. [San Francisco], University of Ljubljana, Université de Lausanne = University of Lausanne (UNIL), Umeå University, Universidade de Mogi das Cruces = University of Mogi das Cruzes (UMC), Karl-Franzens-Universität Graz, University of Ottawa [Ottawa], Institute of Molecular Biology and Biotechnology (IMBB-FORTH), Foundation for Research and Technology - Hellas (FORTH), University of York [York, UK], University of Gothenburg (GU), Goethe-University Frankfurt am Main, University of British Columbia (UBC), National Institute of Malaria Research [New Dehli, Inde] (NIMR), Indian Council of Medical Research [New Dehli] (ICMR), Technische Universität Munchen - Université Technique de Munich [Munich, Allemagne] (TUM), Sanford Burnham Prebys Medical Discovery Institute, Westlake University [Zhejiang], Washington State University (WSU), Universidad de Málaga [Málaga] = University of Málaga [Málaga], University of Oxford, Weizmann Institute of Science [Rehovot, Israël], Lomonosov Moscow State University (MSU), Knut and Alice Wallenberg Foundation, Swedish University of Agricultural Sciences and Linnean Center for Plant Biology, Universiteit Gent = Ghent University [Belgium] (UGENT), Centre National de la Recherche Scientifique (CNRS)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Aix Marseille Université (AMU), University of Lausanne (UNIL), Karl-Franzens-Universität [Graz, Autriche], University of Oxford [Oxford], University of Graz, and Technical University of Munich (TUM)
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Consensus ,METACASPASES ,Protein Conformation ,[SDV]Life Sciences [q-bio] ,Computational biology ,Article ,purl.org/becyt/ford/1 [https] ,Structure-Activity Relationship ,03 medical and health sciences ,0302 clinical medicine ,Terminology as Topic ,medicine ,Animals ,Humans ,CRYSTAL-STRUCTURE ,purl.org/becyt/ford/1.6 [https] ,SPECIFICITY ,Molecular Biology ,Nomenclature ,Caspase ,PARACASPASES ,ComputingMilieux_MISCELLANEOUS ,Plant Proteins ,030304 developmental biology ,Confusion ,0303 health sciences ,biology ,MALT1 ,Biology and Life Sciences ,Cell Biology ,3. Good health ,PROTEASES ,[SDV] Life Sciences [q-bio] ,KEY ,Mucosa-Associated Lymphoid Tissue Lymphoma Translocation 1 Protein ,Caspases ,biology.protein ,CLAN CD ,medicine.symptom ,030217 neurology & neurosurgery - Abstract
Metacaspases and paracaspases are proteases that were first identified as containing a caspase-like structural fold (Uren et al., 2000). Like caspases, metacaspases and paracaspases are multifunctional proteins regulating diverse biological phenomena, such as aging, immunity, proteostasis, and programmed cell death. The broad phylogenetic distribution of metacaspases and paracaspases across all kingdoms of life and large variation of their biochemical and structural features complicate classification and annotation of the rapidly growing number of identified homologs. Establishment of an adequate classification and unified nomenclature of metacaspases and paracaspases is especially important to avoid frequent confusion of these proteases with caspases—a tenacious misnomer that unfortunately does not appear to decline with time. This Letter represents a consensus opinion of researchers studying different aspects of caspases, metacaspases, and paracaspases in various organisms, ranging from microbes to plants and animals., This work was supported by the Knut and Alice Wallenberg Foundation.
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- 2020
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4. Two Interlinked Bistable Switches Govern Mitotic Control in Mammalian Cells
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Scott Rata, Maria F. Suarez Peredo Rodriguez, Stephy Joseph, Nisha Peter, Fabio Echegaray Iturra, Fengwei Yang, Anotida Madzvamuse, Jan G. Ruppert, Kumiko Samejima, Melpomeni Platani, Monica Alvarez-Fernandez, Marcos Malumbres, William C. Earnshaw, Bela Novak, Helfrid Hochegger
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- 2018
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5. Transcriptional stimulation of rate-limiting components of the autophagic pathway improves plant fitness
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Ramesh R. Vetukuri, Sten Stymne, Qinsong Liu, Sofia Marmon, Panagiotis N. Moschou, Sergey Shabala, Kerstin Dalman, Pernilla H. Elander, Karin Ljung, Lana Shabala, Victoria Sanchez-Vera, Daniel Hofius, Ondřej Novák, Mirela Beganovic, Maria F. Suarez, Jenny Lindberg Yilmaz, Elena A. Minina, Catarina Cardoso, and Peter V. Bozhkov
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0301 basic medicine ,Aging ,autophagy ,Physiology ,ATG8 ,ATG5 ,Mutant ,Arabidopsis ,autophagy-related ubiquitin-like conjugation systems ,Stimulation ,Plant Science ,Autophagy-Related Protein 5 ,ATG12 ,03 medical and health sciences ,seed yield ,transcriptional regulation ,stress resistance ,rate-limiting components of autophagic flux ,biology ,biomass ,Chemistry ,Arabidopsis Proteins ,Autophagy ,Autophagy-Related Protein 8 Family ,biology.organism_classification ,Research Papers ,Cell biology ,ATG genes ,030104 developmental biology ,oil content ,Genetic Fitness ,Flux (metabolism) ,Signal Transduction - Abstract
Autophagy-related proteins Atg5 and Atg7 are rate-limiting components of autophagic flux in Arabidopsis. Overexpression of ATG5 or ATG7 genes stimulates Atg8 lipidation, autophagosome formation, and autophagic flux, leading to improved plant fitness., Autophagy is a major catabolic process whereby autophagosomes deliver cytoplasmic content to the lytic compartment for recycling. Autophagosome formation requires two ubiquitin-like systems conjugating Atg12 with Atg5, and Atg8 with lipid phosphatidylethanolamine (PE), respectively. Genetic suppression of these systems causes autophagy-deficient phenotypes with reduced fitness and longevity. We show that Atg5 and the E1-like enzyme, Atg7, are rate-limiting components of Atg8–PE conjugation in Arabidopsis. Overexpression of ATG5 or ATG7 stimulates Atg8 lipidation, autophagosome formation, and autophagic flux. It also induces transcriptional changes opposite to those observed in atg5 and atg7 mutants, favoring stress resistance and growth. As a result, ATG5- or ATG7-overexpressing plants exhibit increased resistance to necrotrophic pathogens and oxidative stress, delayed aging and enhanced growth, seed set, and seed oil content. This work provides an experimental paradigm and mechanistic insight into genetic stimulation of autophagy in planta and shows its efficiency for improving plant productivity.
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- 2017
6. Cyclin A triggers Mitosis either via Greatwall or Cyclin B
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Hégarat, Nadia, primary, Crncec, Adrijana, additional, Peredoa Rodri-guez, Maria F. Suarez, additional, Iturra, Fabio Echegaray, additional, Gu, Yan, additional, Lang, Paul F., additional, Barr, Alexis R., additional, Bakal, Chris, additional, Kanemaki, Masato T., additional, Lamond, Angus I., additional, Novak, Bela, additional, Ly, Tony, additional, and Hochegger, Helfrid, additional
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- 2018
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7. Autophagy and metacaspase determine the mode of cell death in plants
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Elena A. Minina, David E. Clapham, Kazutake Fukada, Maria F. Suarez, Geoffrey Daniel, Eugene I. Savenkov, Lada Filonova, Peter V. Bozhkov, Victoria Sanchez-Vera, Boris Zhivotovsky, Andrei Smertenko, and Vladimir Gogvadze
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Programmed cell death ,Cell Death ,biology ,Autophagy ,Cell ,food and beverages ,Cell Biology ,Vacuole ,Models, Biological ,Metacaspase ,Cell biology ,medicine.anatomical_structure ,Stress, Physiological ,Apoptosis ,Caspases ,Report ,biology.protein ,medicine ,Picea ,Suspensor ,Research Articles ,Caspase ,Plant Proteins - Abstract
Metacaspase-dependent autophagy in plants promotes cell disassembly during vacuolar cell death and inhibits necrosis., Although animals eliminate apoptotic cells using macrophages, plants use cell corpses throughout development and disassemble cells in a cell-autonomous manner by vacuolar cell death. During vacuolar cell death, lytic vacuoles gradually engulf and digest the cytoplasmic content. On the other hand, acute stress triggers an alternative cell death, necrosis, which is characterized by mitochondrial dysfunction, early rupture of the plasma membrane, and disordered cell disassembly. How both types of cell death are regulated remains obscure. In this paper, we show that vacuolar death in the embryo suspensor of Norway spruce requires autophagy. In turn, activation of autophagy lies downstream of metacaspase mcII-Pa, a key protease essential for suspensor cell death. Genetic suppression of the metacaspase–autophagy pathway induced a switch from vacuolar to necrotic death, resulting in failure of suspensor differentiation and embryonic arrest. Our results establish metacaspase-dependent autophagy as a bona fide mechanism that is responsible for cell disassembly during vacuolar cell death and for inhibition of necrosis.
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- 2013
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8. EXTRA SPINDLE POLES (Separase) controls anisotropic cell expansion in Norway spruce (Picea abies) embryos independently of its role in anaphase progression
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Patrick J. Hussey, Eugene I. Savenkov, Emilio Gutierrez-Beltran, Elena A. Minina, Kazutake Fukada, Peter V. Bozhkov, Panagiotis N. Moschou, Andrei Smertenko, Maria F. Suarez, Salim Hossain Reza, Victoria Sanchez-Vera, Knut and Alice Wallenberg Foundation, Olle Engkvist Foundation, The Erling-Persson Family Foundation, August Teodor Larsson Foundation, Swedish Research Council, Swedish Foundation for Strategic Research, and Ministerio de Ciencia e Innovación (España)
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0301 basic medicine ,Physiology ,Plant Science ,Biology ,Cell cycle ,Phragmoplast ,Microtubules ,Chromosomes, Plant ,03 medical and health sciences ,fluids and secretions ,Gene Expression Regulation, Plant ,Sequence Analysis, Protein ,Amino Acid Sequence ,Cloning, Molecular ,Picea ,Metaphase ,Mitosis ,Phylogeny ,Separase ,Anaphase ,Cell Proliferation ,Cytokinesis ,Plant Proteins ,Genetics ,Kinetochore ,Spindle midzone ,Gene Expression Regulation, Developmental ,Proteases ,biochemical phenomena, metabolism, and nutrition ,Cell biology ,Spruce (Picea abies) ,Protein Transport ,030104 developmental biology ,Gene Knockdown Techniques ,Embryogenesis ,Seeds ,Anisotropy - Abstract
The caspase‐related protease separase (EXTRA SPINDLE POLES, ESP) plays a major role in chromatid disjunction and cell expansion in Arabidopsis thaliana. Whether the expansion phenotypes are linked to defects in cell division in Arabidopsis ESP mutants remains elusive. Here we present the identification, cloning and characterization of the gymnosperm Norway spruce (Picea abies, Pa) ESP. We used the P. abies somatic embryo system and a combination of reverse genetics and microscopy to explore the roles of Pa ESP during embryogenesis. Pa ESP was expressed in the proliferating embryonal mass, while it was absent in the suspensor cells. Pa ESP associated with kinetochore microtubules in metaphase and then with anaphase spindle midzone. During cytokinesis, it localized on the phragmoplast microtubules and on the cell plate. Pa ESP deficiency perturbed anisotropic expansion and reduced mitotic divisions in cotyledonary embryos. Furthermore, whilst Pa ESP can rescue the chromatid nondisjunction phenotype of Arabidopsis ESP mutants, it cannot rescue anisotropic cell expansion. Our data demonstrate that the roles of ESP in daughter chromatid separation and cell expansion are conserved between gymnosperms and angiosperms. However, the mechanisms of ESP‐mediated regulation of cell expansion seem to be lineage‐specific., This work was supported by grants from the VR Swedish Research Council (to P.N.M. and P.V.B.), Pehrssons Fund (to P.V.B.), the Swedish Foundation for Strategic Research (to P.V.B.), the Olle Engkvist Foundation (to P.V.B.), the Knut and Alice Wallenberg Foundation (to P.V.B.), the August T. Larsson Foundation (to A.P.S. and P.V.B.), Hatch Grant WNP00826 (to A.P.S.), and a Spanish Ministry of Science and Innovation grant (AGL2010‐15684 to M.F.S). V.S‐V. was recipient of a FPI fellowship from the Spanish Ministry of Science and Innovation (BES‐2008‐003592).
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- 2016
9. Identification and functional analysis of a prokaryotic‐type aspartate aminotransferase: implications for plant amino acid metabolism
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Francisco M. Cánovas, Remedios Crespillo, Laura De Santis, Fernando de la Torre, and Maria F. Suarez
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congenital, hereditary, and neonatal diseases and abnormalities ,Chloroplasts ,Nitrogen ,Molecular Sequence Data ,Arabidopsis ,Sequence alignment ,Plant Science ,Conserved sequence ,Escherichia coli ,Genetics ,Amino Acid Sequence ,Aspartate Aminotransferases ,Amino Acids ,Photosynthesis ,Gene ,Peptide sequence ,Conserved Sequence ,Phylogeny ,chemistry.chemical_classification ,biology ,fungi ,food and beverages ,Oryza ,Cell Biology ,Plants ,Pinus ,biology.organism_classification ,Amino acid ,Chloroplast ,Kinetics ,Enzyme ,Prokaryotic Cells ,chemistry ,Biochemistry ,Sequence Alignment - Abstract
In this paper, we report the identification of genes from pine (PpAAT), Arabidopsis (AtAAT) and rice (OsAAT) encoding a novel class of aspartate aminotransferase (AAT, EC 2.6.1.1) in plants. The enzyme is unrelated to other eukaryotic AATs from plants and animals but similar to bacterial enzymes. Phylogenetic analysis indicates that this prokaryotic-type AAT is closely related to cyanobacterial enzymes, suggesting it might have an endosymbiotic origin. Interestingly, most of the essential residues involved in the interaction with the substrate and the attachment of pyridoxal phosphate cofactor in the active site of the enzyme were conserved in the deduced polypeptide. The polypeptide is processed in planta to a mature subunit of 45 kDa that is immunologically distinct from the cytosolic, mitochondrial and chloroplastic isoforms of AAT previously characterized in plants. Functional expression of PpAAT sequences in Escherichia coli showed that the processed precursor is assembled into a catalytically active homodimeric holoenzyme that is strictly specific for aspartate. These atypical genes are predominantly expressed in green tissues of pine, Arabidopsis and rice, suggesting a key role of this AAT in nitrogen metabolism associated with photosynthetic activity. Moreover, immunological analyses revealed that the plant prokaryotic-type AAT is a nuclear-encoded chloroplast protein. This implies that two plastidic AAT co-exist in plants: a eukaryotic type previously characterized and the prokaryotic type described here. The respective roles of these two enzymes in plant amino acid metabolism are discussed.
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- 2006
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10. Cysteine protease mcII-Pa executes programmed cell death during plant embryogenesis
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Lada Filonova, Andrey A. Zamyatnin, Boris Zhivotovsky, Maria F. Suarez, Salvador Rodriguez-Nieto, Peter V. Bozhkov, Geoffrey Daniel, and Andrei Smertenko
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Programmed cell death ,Proteases ,Immunoblotting ,Molecular Sequence Data ,Plant embryogenesis ,Apoptosis ,DNA Fragmentation ,Substrate Specificity ,In Situ Nick-End Labeling ,otorhinolaryngologic diseases ,Picea ,Caspase ,Cell Nucleus ,Multidisciplinary ,Base Sequence ,biology ,Sequence Analysis, DNA ,Biological Sciences ,Immunohistochemistry ,Cysteine protease ,Metacaspase ,Chromatin ,Cell biology ,Cysteine Endopeptidases ,Kinetics ,Microscopy, Electron ,Microscopy, Fluorescence ,Biochemistry ,biology.protein - Abstract
Programmed cell death (PCD) is indispensable for eukaryotic development. In animals, PCD is executed by the caspase family of cysteine proteases. Plants do not have close homologues of caspases but possess a phylogenetically distant family of cysteine proteases named metacaspases. The cellular function of metacaspases in PCD is unknown. Here we show that during plant embryogenesis, metacaspase mcII-Pa translocates from the cytoplasm to nuclei in terminally differentiated cells that are destined for elimination, where it colocalizes with the nuclear pore complex and chromatin, causing nuclear envelope disassembly and DNA fragmentation. The cell-death function of mcII-Pa relies on its cysteine-dependent arginine-specific proteolytic activity. Accordingly, mutation of catalytic cysteine abrogates the proteolytic activity of mcII-Pa and blocks nuclear degradation. These results establish metacaspase as an executioner of PCD during embryo patterning and provide a functional link between PCD and embryogenesis in plants. Although mcII-Pa and metazoan caspases have different substrate specificity, they serve a common function during development, demonstrating the evolutionary parallelism of PCD pathways in plants and animals.
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- 2005
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11. Molecular aspects of nitrogen mobilization and recycling in trees
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Francisco R. Cantón, Maria F. Suarez, and Francisco M. Cánovas
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Perennial plant ,Nitrogen ,Biological Transport, Active ,Plant Science ,Biology ,Biochemistry ,Trees ,chemistry.chemical_compound ,Gene Expression Regulation, Plant ,Glutamate-Ammonia Ligase ,Botany ,Ammonium ,Photosynthesis ,Nitrogen cycle ,Plant Proteins ,Glutamate Synthase ,fungi ,food and beverages ,Plant physiology ,Cell Biology ,General Medicine ,Herbaceous plant ,Agronomy ,chemistry ,Seeds ,Photorespiration ,Dormancy ,Signal Transduction ,Woody plant - Abstract
Plants have developed a variety of molecular strategies to use limiting nutrients with a maximum efficiency. N assimilated into biomolecules can be released in the form of ammonium by plant metabolic activities in various physiological processes such as photorespiration, the biosynthesis of phenylpropanoids or the mobilization of stored reserves. Thus, efficient reassimilation mechanisms are required to reincorporate liberated ammonium into metabolism and maintain N plant economy. Although the biochemistry and molecular biology of ammonium recycling in annual herbaceous plants has been previously reported, the recent advances in woody plants need to be reviewed. Moreover, it is important to point out that N recycling is quantitatively massive during some of these metabolic processes in trees, including seed germination, the onset of dormancy and resumption of active growth or the biosynthesis of lignin that takes place during wood formation. Therefore, woody plants constitute an excellent system as a model to study N mobilization and recycling. The aim of this paper is to provide an overview of different physiological processes in woody perennials that challenge the overall plant N economy by releasing important amounts of inorganic N in the form of ammonium.
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- 2005
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12. Autophagy mediates caloric restriction-induced lifespan extension inArabidopsis
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Martin Weih, Elena A. Minina, Maria F. Suarez, Panagiotis N. Moschou, Victoria Sanchez-Vera, Eva Sundberg, and Peter V. Bozhkov
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Aging ,Light ,biology ,Arabidopsis Proteins ,Longevity ,Autophagy ,Arabidopsis ,Heterotroph ,Cell Biology ,Plants, Genetically Modified ,biology.organism_classification ,Photosynthesis ,Phosphoric Monoester Hydrolases ,Autophagy-Related Protein 5 ,Cell biology ,Light intensity ,Glucose ,Botany ,Arabidopsis thaliana ,Autotroph ,Gene ,Caloric Restriction - Abstract
Summary Caloric restriction (CR) extends lifespan in various heterotrophic organisms ranging from yeasts to mammals, but whether a similar phenomenon occurs in plants remains unknown. Plants are autotrophs and use their photosynthetic machinery to convert light energy into the chemical energy of glucose and other organic compounds. As the rate of photosynthesis is proportional to the level of photosynthetically active radiation, the CR in plants can be modeled by lowering light intensity. Here, we report that low light intensity extends the lifespan in Arabidopsis through the mechanisms triggering autophagy, the major catabolic process that recycles damaged and potentially harmful cellular material. Knockout of autophagy-related genes results in the short lifespan and suppression of the lifespan-extending effect of the CR. Our data demonstrate that the autophagy-dependent mechanism of CR-induced lifespan extension is conserved between autotrophs and heterotrophs.
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- 2013
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13. VEIDase is a principal caspase-like activity involved in plant programmed cell death and essential for embryonic pattern formation
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Andrei Smertenko, Boris Zhivotovsky, Maria F. Suarez, Peter V. Bozhkov, S. von Arnold, Andreas Helmersson, and Lada Filonova
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Cell Extracts ,Programmed cell death ,biology ,Somatic embryogenesis ,Temperature ,Plant embryogenesis ,Apoptosis ,Embryo ,Cell Biology ,Hydrogen-Ion Concentration ,Sodium Chloride ,Caspase Inhibitors ,Embryonic stem cell ,Metacaspase ,Cell biology ,Zinc ,Caspases ,Seeds ,biology.protein ,Protease Inhibitors ,Picea ,Molecular Biology ,Caspase ,Body Patterning - Abstract
Plant embryogenesis is intimately associated with programmed cell death. The mechanisms of initiation and control of programmed cell death during plant embryo development are not known. Proteolytic activity associated with caspase-like proteins is paramount for control of programmed cell death in animals and yeasts. Caspase family of proteases has unique strong preference for cleavage of the target proteins next to asparagine residue. In this work, we have used synthetic peptide substrates containing caspase recognition sites and corresponding specific inhibitors to analyse the role of caspase-like activity in the regulation of programmed cell death during plant embryogenesis. We demonstrate that VEIDase is a principal caspase-like activity implicated in plant embryogenesis. This activity increases at the early stages of embryo development that coincide with massive cell death during shape remodeling. The VEIDase activity exhibits high sensitivity to pH, ionic strength and Zn(2+) concentration. Altogether, biochemical assays show that VEIDase plant caspase-like activity resembles that of both mammalian caspase-6 and yeast metacaspase, YCA1. In vivo, VEIDase activity is localised specifically in the embryonic cells during both the commitment and in the beginning of the execution phase of programmed cell death. Inhibition of VEIDase prevents normal embryo development via blocking the embryo-suspensor differentiation. Our data indicate that the VEIDase activity is an integral part in the control of plant developmental cell death programme, and that this activity is essential for the embryo pattern formation.
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- 2003
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14. Spatial and temporal expression of two cytosolic glutamine synthetase genes in Scots pine: functional implications on nitrogen metabolism during early stages of conifer development
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Concepción Ávila, Maria F. Suarez, Josefa Gómez-Maldonado, and Francisco M. Cánovas
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Transcription, Genetic ,Nitrogen ,Molecular Sequence Data ,Plant Science ,Biology ,Plant Roots ,Isozyme ,Gene Expression Regulation, Enzymologic ,Trees ,Hypocotyl ,chemistry.chemical_compound ,Cytosol ,Biosynthesis ,Gene Expression Regulation, Plant ,Glutamate-Ammonia Ligase ,Glutamine synthetase ,Genetics ,Gene family ,RNA, Messenger ,Gene Expression Regulation, Developmental ,Cell Biology ,Vascular bundle ,biology.organism_classification ,Isoenzymes ,Glutamine ,Cycadopsida ,Biochemistry ,chemistry ,Seedling ,Seeds - Abstract
Ammonium assimilation during the initial stages of Scots pine growth involves two cytosolic glutamine synthetase (GS, EC: 6.3.1.2) isoenzymes encoded by separate genes, GS1a and GS1b. GS1a was most exclusively expressed in photosynthetic tissues of the seedling whereas GS1b was expressed ubiquitously showing higher levels in non-photosynthetic tissues such as root and hypocotyl. Temporal expression analysis has shown that when germination starts GS1b is the predominant form in the embryo, however, its relative abundance in the tissue decreased in the postgerminative stages when green cotyledons are developed. In contrast GS1a was present at a low level in the embryo but its abundance increased markedly during germination and seedling growth. These data suggest that GS1a and GS1b genes display different and non-redundant roles in the nitrogen metabolism of conifers. The precise localization of individual transcripts by in situ hybridization strongly supports this possibility. GS1 gene products are mainly expressed in different cellular types: GS1a in chlorophylic parenchyma and GS1b in the vascular bundles of all tissues examined in the seedling. Our data support that glutamine biosynthesis in pine seedlings follows a different pattern related to angiosperms involving two cytosolic GS proteins: one of them a typical cytosolic GS which may be involved in the generation of glutamine for N transport and a second cytosolic GS generating amino donors for the biosynthesis of major N compounds in photosynthetic tissues, a closer role to angiosperm chloroplastic GS. The results are discussed with regard to recent studies on N mobilization and metabolism during the initial stages of conifer development.
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- 2001
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15. Purification and Characterization of NADP+-Linked Isocitrate Dehydrogenase from Scots Pine
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Francisco M. Cánovas, Maria F. Suarez, Jesús Palomo, and Fernando Gallardo
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chemistry.chemical_classification ,food.ingredient ,biology ,Physiology ,Nitrogen assimilation ,fungi ,food and beverages ,Dehydrogenase ,Plant Science ,chemistry.chemical_compound ,Enzyme ,Isocitrate dehydrogenase ,food ,chemistry ,Biosynthesis ,Biochemistry ,Glutamate synthase ,Glutamine synthetase ,Genetics ,biology.protein ,Cotyledon - Abstract
NADP+-isocitrate dehydrogenase (NADP+-IDH; EC 1.1.1.42) is involved in the supply of 2-oxoglutarate for ammonia assimilation and glutamate synthesis in higher plants through the glutamine synthetase/glutamate synthase (GS/GOGAT) cycle. Only one NADP+-IDH form of cytosolic localization was detected in green cotyledons of pine (Pinus spp.) seedlings. The pine enzyme was purified and exhibited molecular and kinetic properties similar to those described for NADP+-IDH from angiosperm, with a higher catalytic efficiency (105 m −1s−1) than the deduced efficiencies for GS and GOGAT in higher plants. A polyclonal antiserum was raised against pine NADP+-IDH and used to assess protein expression in the seedlings. Steady-state levels of NADP+-IDH were coordinated with GS during seed germination and were associated with GS/GOGAT enzymes during chloroplast biogenesis, suggesting that NADP+-IDH is involved in the provision of carbon skeletons for the synthesis of nitrogen-containing molecules. However, a noncoordinated pattern of NADP+-IDH and GS/GOGAT was observed in advanced stages of cotyledon development and in the hypocotyl. A detailed analysis in hypocotyl sections revealed that NADP+-IDH abundance was inversely correlated with the presence of GS, GOGAT, and ribulose-1,5-bisphosphate carboxylase/oxygenase but was associated with the differentiation of the organ. These results cannot be explained by the accepted role of the enzyme in nitrogen assimilation and strongly suggest that NADP+-IDH may have other, as-yet-unknown, biological functions.
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- 1998
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16. Detection and measurement of necrosis in plants
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Elena A, Minina, Lada H, Filonova, Victoria, Sanchez-Vera, Maria F, Suarez, Geoffrey, Daniel, and Peter V, Bozhkov
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Ions ,Cell Survival ,Protoplasts ,Cytological Techniques ,Arabidopsis ,Intracellular Space ,Mitochondria ,Necrosis ,Adenosine Triphosphate ,Oxygen Consumption ,Suspensions ,Picea ,Reactive Oxygen Species ,Cells, Cultured ,Fluorescent Dyes - Abstract
Necrosis plays a fundamental role in plant physiology and pathology. When plants or plant cell cultures are subjected to abiotic stress they initiate rapid cell death with necrotic morphology. Likewise, when plants are attacked by pathogens, they develop necrotic lesions, the reaction known as hypersensitive response. Great advances in the understanding of signaling pathways that lead to necrosis during plant-pathogen interaction have been made in the last two decades using Arabidopsis thaliana as a model plant. Further understanding of these signaling pathways, as well as those regulating the execution phase of necrotic cell death per se would require a robust set of readout assays to detect and measure necrosis in various plant model systems. Here we provide description of such assays, beginning from electron microscopy, as the "gold standard" to diagnose necrosis. This is followed by two groups of biochemical and cytochemical assays used by our group to detect and quantify mitochondrial dysfunction and the loss of protoplast integrity during necrosis in Arabidopsis plants and cell suspension cultures of both Arabidopsis and Norway spruce.
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- 2013
17. Detection and Measurement of Necrosis in Plants
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Elena A. Minina, Geoffrey Daniel, Victoria Sanchez-Vera, Lada Filonova, Maria F. Suarez, and Peter V. Bozhkov
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Hypersensitive response ,Programmed cell death ,Necrosis ,biology ,Abiotic stress ,fungi ,food and beverages ,Protoplast ,biology.organism_classification ,Cell biology ,Arabidopsis ,medicine ,Arabidopsis thaliana ,Signal transduction ,medicine.symptom - Abstract
Necrosis plays a fundamental role in plant physiology and pathology. When plants or plant cell cultures are subjected to abiotic stress they initiate rapid cell death with necrotic morphology. Likewise, when plants are attacked by pathogens, they develop necrotic lesions, the reaction known as hypersensitive response. Great advances in the understanding of signaling pathways that lead to necrosis during plant-pathogen interaction have been made in the last two decades using Arabidopsis thaliana as a model plant. Further understanding of these signaling pathways, as well as those regulating the execution phase of necrotic cell death per se would require a robust set of readout assays to detect and measure necrosis in various plant model systems. Here we provide description of such assays, beginning from electron microscopy, as the "gold standard" to diagnose necrosis. This is followed by two groups of biochemical and cytochemical assays used by our group to detect and quantify mitochondrial dysfunction and the loss of protoplast integrity during necrosis in Arabidopsis plants and cell suspension cultures of both Arabidopsis and Norway spruce.
- Published
- 2013
- Full Text
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18. Tudor staphylococcal nuclease is an evolutionarily conserved component of the programmed cell death degradome
- Author
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Juha Saarikettu, Anna Golovko, Andrey A. Zamyatnin, Peter V. Bozhkov, Tuuli Välineva, Eugene I. Savenkov, Eva Sundberg, Olli Silvennoinen, Budhi Sagar Tiwari, Ulf Stahl, Alena Vaculova, Andrei Smertenko, Elena A. Minina, Maria F. Suarez, Boris Zhivotovsky, Anton V. Zavialov, Salvador Rodriguez-Nieto, Jens F. Sundström, Patrick J. Hussey, and Mikko J. Frilander
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0106 biological sciences ,Models, Molecular ,Proteases ,SND1 ,Programmed cell death ,Apoptosis ,01 natural sciences ,Evolution, Molecular ,03 medical and health sciences ,RNA interference ,Humans ,Caspase ,030304 developmental biology ,0303 health sciences ,Gene knockdown ,biology ,Hydrolysis ,Nuclear Proteins ,Cell Biology ,Endonucleases ,Metacaspase ,Cell biology ,Gene Knockdown Techniques ,biology.protein ,RNA Interference ,010606 plant biology & botany ,HeLa Cells - Abstract
Programmed cell death (PCD) is executed by proteases, which cleave diverse proteins thus modulating their biochemical and cellular functions. Proteases of the caspase family and hundreds of caspase substrates constitute a major part of the PCD degradome in animals. Plants lack close homologues of caspases, but instead possess an ancestral family of cysteine proteases, metacaspases. Although metacaspases are essential for PCD, their natural substrates remain unknown. Here we show that metacaspase mcII-Pa cleaves a phylogenetically conserved protein, TSN (Tudor staphylococcal nuclease), during both developmental and stress-induced PCD. TSN knockdown leads to activation of ectopic cell death during reproduction, impairing plant fertility. Surprisingly, human TSN (also known as p100 or SND1), a multifunctional regulator of gene expression, is cleaved by caspase-3 during apoptosis. This cleavage impairs the ability of TSN to activate mRNA splicing, inhibits its ribonuclease activity and is important for the execution of apoptosis. Our results establish TSN as the first biological substrate of metacaspase and demonstrate that despite the divergence of plants and animals from a common ancestor about one billion years ago and their use of distinct PCD pathways, both have retained a common mechanism to compromise cell viability through the cleavage of the same substrate, TSN.
- Published
- 2009
19. Detection of Programmed Cell Death in Plant Embryos
- Author
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Lada Filonova, Peter V. Bozhkov, and Maria F. Suarez
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Programmed cell death ,animal structures ,TUNEL assay ,embryonic structures ,otorhinolaryngologic diseases ,DNA fragmentation ,Embryo ,Fragmentation (cell biology) ,Biology ,Suspensor ,Embryonic stem cell ,Cell biology ,Nuclear DNA - Abstract
Programmed cell death (PCD) is an integral part of embryogenesis. In plant embryos, PCD functions during terminal differentiation and elimination of the temporary organ, suspensor, as well as during establishment of provascular system. Embryo abortion is another example of embryonic PCD activated at pathological situations and in polyembryonic seeds. Recent studies identified the sequence of cytological events leading to cellular self-destruction in plant embryos. As in most if not all the developmental cell deaths in plants, embryonic PCD is hallmarked by autophagic degradation of the cytoplasm and nuclear disassembly that includes breakdown of the nuclear envelope and DNA fragmentation. The optimized setup of terminal deoxynucleotidyl transferase-mediated dUTP nick end labeling (TUNEL) allows the routine in situ analysis of nuclear DNA fragmentation in plant embryos. This chapter provides step-by-step procedure of how to process embryos for TUNEL and how to combine TUNEL with immunolocalization of the protein of interest.
- Published
- 2008
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20. The aspartate aminotransferase family in conifers: biochemical analysis of a prokaryotic-type enzyme from maritime pine
- Author
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Francisco M. Cánovas, Maria F. Suarez, Laura De Santis, and Fernando de la Torre
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Physiology ,Nitrogen assimilation ,Molecular Sequence Data ,Plant Science ,Biology ,medicine.disease_cause ,Cyanobacteria ,Isozyme ,chemistry.chemical_compound ,medicine ,Amino Acid Sequence ,Aspartate Aminotransferases ,Plastids ,Pyridoxal ,Escherichia coli ,Thermostability ,chemistry.chemical_classification ,Protein primary structure ,Pinus ,Molecular biology ,Amino acid ,Isoenzymes ,Enzyme ,chemistry ,Biochemistry ,Prokaryotic Cells ,Multigene Family ,Cotyledon - Abstract
Plant aspartate aminotransferase (AAT, EC 2.6.1.1) plays a key role in primary nitrogen assimilation, the transfer of reducing equivalents and the interchanges of carbon and nitrogen pools between subcellular compartments. We investigated the AAT family in conifers using maritime pine as the experimental model. Genes for cytosolic, mitochondrial and two plastidic isoenzymes (eukaryotic- and prokaryotic-types) were identified and their deduced amino acid sequences compared. The primary structure of the eukaryotic-type enzymes is quite well conserved, whereas the prokaryotic-type AAT is highly divergent (15% of identity). These molecular data were confirmed by the absence of immunological cross-reactivity between the two types of native AATs. The mature prokaryotic-type polypeptide was overexpressed in Escherichia coli, and the native enzyme was purified to apparent homogeneity and its molecular properties determined. The fully active recombinant holoenzyme showed highest catalytic activity at 50-60 degrees C and was moderately thermostable, retaining about 50% of its activity after incubation at 70 degrees C for 5-10 min. The presence of pyridoxal 5'-phosphate significantly increased the thermostability of the enzyme. These molecular characteristics were exploited to develop a rapid protocol for the purification of this prokaryotic-type enzyme from pine cotyledons. The results will be useful for studying aspartate and amino acid metabolism in trees.
- Published
- 2007
21. Expression patterns of two glutamine synthetase genes in zygotic and somatic pine embryos support specific roles in nitrogen metabolism during embryogenesis
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María J Pérez Rodríguez, Raúl Heredia, Jean-François Trontin, Francisco M. Cánovas, Peter V. Bozhkov, Sara von Arnold, David Breton, Lada Filonova, Luc Harvengt, Concepción Ávila, and Maria F. Suarez
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animal structures ,Zygote ,Somatic embryogenesis ,Physiology ,Somatic cell ,Nitrogen ,Embryogenesis ,Gene Expression Regulation, Developmental ,Embryo ,Cell Differentiation ,Plant Science ,Biology ,Pinus ,Plant Roots ,Cell biology ,Cell Line ,Biochemistry ,Gene Expression Regulation, Plant ,Glutamate-Ammonia Ligase ,Glutamine synthetase ,Seeds ,Maternal to zygotic transition ,Gene ,Plant Proteins - Abstract
Summary • Here, embryo-specific patterns of glutamine synthetase (GS) genes were studied for the first time using pine somatic and zygotic embryogenesis as model systems. • GS1a expression was absent in zygotic embryos whereas it was detected in the cotyledons of somatic embryos at late developmental stages along with transcripts for photosynthesis genes and arginase. These findings suggest that germination was initiated in maturing somatic embryos. • GS1b transcripts were found mainly in procambial cells in both zygotic and somatic embryos. Expression of the GS1b in procambial cells before the differentiation of mature vascular elements indicated that this gene could be useful as a molecular marker for early stages of vascular differentiation in pine. Accordingly, a correlation was found between the quality of somatic embryos generated from three different cell lines and the pattern and level of GS1b expression. • Our data suggest that GS1a and GS1b genes play distinct functional roles in the biosynthesis and mobilization of seed nitrogen reserves. Furthermore, the results presented may have potential application for improving conifer somatic embryogenesis.
- Published
- 2006
22. Programmed cell death in plant embryogenesis
- Author
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Peter V, Bozhkov, Lada H, Filonova, and Maria F, Suarez
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Seeds ,Embryonic Development ,Apoptosis ,DNA Fragmentation ,Plants - Abstract
Successful embryonic development in plants, as in animals, requires a strict coordination of cell proliferation, cell differentiation, and cell-death programs. The role of cell death is especially critical for the establishment of polarity at early stages of plant embryogenesis, when the differentiation of the temporary structure, the suspensor, is followed by its programmed elimination. Here, we review the emerging knowledge of this and other functions of programmed cell death during plant embryogenesis, as revealed by developmental analyses of Arabidopsis embryo-specific mutants and gymnosperm (spruce and pine) model embryonic systems. Cell biological studies in these model systems have helped to identify and order the cellular processes occurring during self-destruction of the embryonic cells. While metazoan embryos can recruit both apoptotic and autophagic cell deaths, the ultimate choice depending on the developmental task and conditions, plant embryos use autophagic cell disassembly as a single universal cell-death pathway. Dysregulation of this pathway leads to aberrant or arrested embryo development. We address the role of distinct cellular components in the execution of the autophagic cell death, and outline an overall mechanistic view of how cells are eliminated during plant embryonic pattern formation. Finally, we discuss the possible roles of some of the candidate plant cell-death proteins in the regulation of developmental cell death.
- Published
- 2005
23. Programmed Cell Death in Plant Embryogenesis
- Author
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Lada Filonova, Peter V. Bozhkov, and Maria F. Suarez
- Subjects
Programmed cell death ,Cell growth ,Cellular differentiation ,fungi ,Cell ,Plant embryogenesis ,Developmental cell ,food and beverages ,Embryo ,Biology ,Embryonic stem cell ,Cell biology ,medicine.anatomical_structure ,medicine ,book.journal ,book - Abstract
Successful embryonic development in plants, as in animals, requires a strict coordination of cell proliferation, cell differentiation, and cell-death programs. The role of cell death is especially critical for the establishment of polarity at early stages of plant embryogenesis, when the differentiation of the temporary structure, the suspensor, is followed by its programmed elimination. Here, we review the emerging knowledge of this and other functions of programmed cell death during plant embryogenesis, as revealed by developmental analyses of Arabidopsis embryo-specific mutants and gymnosperm (spruce and pine) model embryonic systems. Cell biological studies in these model systems have helped to identify and order the cellular processes occurring during self-destruction of the embryonic cells. While metazoan embryos can recruit both apoptotic and autophagic cell deaths, the ultimate choice depending on the developmental task and conditions, plant embryos use autophagic cell disassembly as a single universal cell-death pathway. Dysregulation of this pathway leads to aberrant or arrested embryo development. We address the role of distinct cellular components in the execution of the autophagic cell death, and outline an overall mechanistic view of how cells are eliminated during plant embryonic pattern formation. Finally, we discuss the possible roles of some of the candidate plant cell-death proteins in the regulation of developmental cell death.
- Published
- 2005
- Full Text
- View/download PDF
24. Variation in transcript abundance during somatic embryogenesis in gymnosperms
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Maria F. Suarez, Tzu-Ming Chu, Leonel van Zyl, Deborah Craig, Peter V. Bozhkov, Russell D. Wolfinger, Ulrika Egertsdotter, Ronald R. Sederoff, Sara von Arnold, and Claudio Stasolla
- Subjects
Genetics ,Expressed sequence tag ,Somatic embryogenesis ,Microarray ,Transcription, Genetic ,Physiology ,Embryogenesis ,Genetic Variation ,Embryo ,Plant Science ,Biology ,Embryomics ,Cell biology ,Trees ,Cycadopsida ,Gene Expression Regulation, Plant ,Gene expression ,Seeds ,Picea ,Gene ,Oligonucleotide Array Sequence Analysis - Abstract
Somatic embryogenesis of Norway spruce (Picea abies L.) is a versatile model system to study molecular mechanisms regulating embryo development because it proceeds through defined developmental stages corresponding to specific culture treatments. Normal embryonic development involves early differentiation of proembryogenic masses (PEMs) into somatic embryos, followed by early and late embryogeny leading to the formation of mature cotyledonary embryos. In some cell lines there is a developmental arrest at the PEM-somatic embryo transition. To learn more about the molecular mechanisms regulating embryogenesis, we compared the transcript profiles of two normal lines and one developmentally arrested line. Ribonucleic acid, extracted from these cell lines at successive developmental stages, was analyzed on DNA microarrays containing 2178 expressed sequence tags (ESTs) (corresponding to 2110 unique cDNAs) from loblolly pine (Pinus taeda L.). Hybridization between spruce and pine species on microarrays has been shown to be effective (van Zyl et al. 2002, Stasolla et al. 2003). In contrast to the developmentally arrested line, the early phases of normal embryo development are characterized by a precise pattern of gene expression, i.e., repression followed by induction. Comparison of transcript levels between successive stages of embryogenesis allowed us to identify several genes that showed unique expression responses during normal development. Several of these genes encode proteins involved in detoxification processes, methionine synthesis and utilization, and carbohydrate metabolism. The potential role of these genes in embryo development is discussed.
- Published
- 2004
25. Comparing nutrient intake from food to the estimated average requirements shows middle- to upper-income pregnant women lack iron and possibly magnesium
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Maria F. Suarez, Bobbi Langkamp-Henken, Michael J. Lukowski, R. Elaine Turner, and Ramon C. Littell
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Vitamin ,Adult ,medicine.medical_specialty ,Population ,Diet Records ,Diet Surveys ,chemistry.chemical_compound ,Animal science ,Nutrient ,Pregnancy ,Internal medicine ,medicine ,Humans ,Magnesium ,education ,education.field_of_study ,Analysis of Variance ,Minerals ,Nutrition and Dietetics ,business.industry ,Nutritional Requirements ,Iron Deficiencies ,Vitamins ,medicine.disease ,Ascorbic acid ,Food Analysis ,Diet ,Endocrinology ,Nutrition Assessment ,chemistry ,Dietary Reference Intake ,Dietary Supplements ,Female ,Safety ,business ,Energy Intake ,Magnesium Deficiency ,Iron, Dietary ,Food Science - Abstract
Objective To determine whether nutrient intake from food alone was adequate across trimesters for middle- to upper-income pregnant women when compared with estimated average requirements (EAR), and to determine whether food intake exceeded the tolerable upper intake level (UL) for any nutrient. Design Observational study in which pregnant women completed 3-day diet records each month during their pregnancy. Records were analyzed for nutrient content, and usual intake distributions were determined. Subjects/setting Subjects were low-risk women in their first trimester of pregnancy (living in middle- to upper-income households). Ninety-four women were recruited, and sixty-three participated. Statistical analyses performed Nutrient intake data were adjusted to achieve normality by using a power transformation. A mixed model method was used to assess trends in intake over time, and to estimate mean intake and within-subjects and between-subjects variance. The usual intake distribution for each nutrient was determined and compared with the EAR and UL. Results The probabilities of usual nutrient intake from food being less than the EAR were highest for iron (.91), magnesium (.53), zinc (.31), vitamin B6 (.21), selenium (.20), and vitamin C (.12). Women were not at risk of exceeding the UL from food intake for any nutrient studied. Applications/conclusions Study participants did not consume adequate amounts of iron from food to meet the needs of pregnancy, and therefore iron supplementation is warranted in this population. Intake of magnesium was suboptimal using the EAR as a cut-point for adequacy. J Am Diet Assoc. 2003;103:461-466 .
- Published
- 2003
26. Molecular and enzymatic analysis of ammonium assimilation in woody plants
- Author
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Francisco M. Cánovas, Maria F. Suarez, Concepción Ávila, Francisco R. Cantón, M. Gonzalo Claros, Angel García-Gutiérrez, and Fernando Gallardo
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Physiology ,Nitrogen ,Plant Science ,Trees ,chemistry.chemical_compound ,Magnoliopsida ,Gene Expression Regulation, Plant ,Glutamate-Ammonia Ligase ,Glutamine synthetase ,Glutamate synthase ,Botany ,Ammonium ,Phylogeny ,chemistry.chemical_classification ,biology ,Assimilation (biology) ,Metabolism ,Plants, Genetically Modified ,Carbon ,Isocitrate Dehydrogenase ,Enzymes ,Mitochondria ,Quaternary Ammonium Compounds ,Metabolic pathway ,Enzyme ,Cycadopsida ,chemistry ,Biochemistry ,biology.protein ,Amino Acid Oxidoreductases ,Woody plant - Abstract
Ammonium is assimilated into amino acids through the sequential action of glutamine synthetase (GS) and glutamate synthase (GOGAT) enzymes. This metabolic pathway is driven by energy, reducing power and requires the net supply of 2-oxoglutarate that can be provided by the reaction catalysed by isocitrate dehydrogenase (IDH). Most studies on the biochemistry and molecular biology of N-assimilating enzymes have been carried out on annual plant species and the available information on woody models is far more limited. This is in spite of their economic and ecological importance and the fact that nitrogen is a common limiting factor for tree growth. GS, GOGAT and IDH enzymes have been purified from several woody species and their kinetic and molecular properties determined. A number of cDNA clones have also been isolated and characterized. Although the enzymes are remarkably well conserved along the evolutionary scale, major differences have been found in their compartmentation within the cell between angiosperms and conifers, suggesting possible adaptations to specific functional roles. The analysis of the gene expression patterns in a variety of biological situations such as changes in N nutrition, development, biotic or abiotic stresses and senescence, suggest that cytosolic GS plays a central and pivotal role in ammonium assimilation and metabolism in woody plants. The modification of N assimilation efficiency has been recently approached in trees by overexpression of a cytosolic pine GS in poplar. The results obtained, suggest that an increase in cytosolic GS might lead to a global effect on the synthesis of nitrogenous compounds in the leaves, with enhanced vegetative growth of transgenic trees. All these data suggest that manipulation of cytosolic GS may have consequences for plant growth and biomass production.
- Published
- 2002
27. Metacaspase-dependent programmed cell death is essential for plant embryogenesis
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Andrei Smertenko, Peter V. Bozhkov, Maria F. Suarez, Sara von Arnold, Eugene I. Savenkov, Lada Filonova, David H. Clapham, and Boris Zhivotovsky
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Programmed cell death ,biology ,Agricultural and Biological Sciences(all) ,Biochemistry, Genetics and Molecular Biology(all) ,Plant embryogenesis ,In situ hybridization ,General Biochemistry, Genetics and Molecular Biology ,Metacaspase ,Cell biology ,RNA interference ,Apoptosis ,In Situ Nick-End Labeling ,biology.protein ,General Agricultural and Biological Sciences ,Caspase - Published
- 2004
- Full Text
- View/download PDF
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