329 results on '"Margaret A. Phillips"'
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2. Integrating the Entrepreneurial Mindset Into the Engineering Classroom.
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Lisa Bosman and Margaret L. Phillips
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- 2022
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3. Workplace Information Needs of Engineering and Technology Graduates: A Case Study on Two Continents.
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Margaret L. Phillips, Michael Fosmire, Marco Schirone, Christina Johansson, and Frederick C. Berry
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- 2020
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4. An Early Look at a Scoping Review of Systematic Review Methodologies in Engineering.
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Jason B. Reed, Margaret L. Phillips, Amy S. Van Epps, and David A. Zwicky
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- 2020
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5. Improving Writing Quality of Capstone Reports.
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Frederick C. Berry, Margaret L. Phillips, James Condron, and Phillip A. Sanger
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- 2021
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6. Initial Study of Information Literacy Content in Engineering and Technology Job Postings.
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Margaret L. Phillips, David A. Zwicky, and Jing Lu
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- 2020
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7. Integrating data information literacy into a service-learning engineering design course.
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Margaret L. Phillips and Mohammad Reza Jahanshahi 0001
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- 2017
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8. Fast-Killing Tyrosine Amide ((S)-SW228703) with Blood- and Liver-Stage Antimalarial Activity Associated with the Cyclic Amine Resistance Locus (PfCARL)
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Leah S. Imlay, Aloysus K. Lawong, Suraksha Gahalawat, Ashwani Kumar, Chao Xing, Nimisha Mittal, Sergio Wittlin, Alisje Churchyard, Hanspeter Niederstrasser, Benigno Crespo-Fernandez, Bruce A. Posner, Francisco-Javier Gamo, Jake Baum, Elizabeth A. Winzeler, Benoît Laleu, Joseph M. Ready, and Margaret A. Phillips
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Infectious Diseases - Published
- 2023
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9. Using everyday objects to engage students in standards education.
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Margaret L. Phillips and Paul McPherson
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- 2016
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10. Orbital apex syndrome from bacterial sinusitis without orbital cellulitis
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Margaret L. Pfeiffer, Helen A. Merritt, Lucy A. Bailey, Karina Richani, and Margaret E. Phillips
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Ophthalmology ,RE1-994 - Abstract
Purpose: To describe a case of orbital apex syndrome as a result of isolated bacterial sinusitis. Observations: A 63-year-old woman presented with an orbital apex syndrome from isolated bacterial sinusitis with rapidly declining visual acuity to no light perception. We compared our case with 6 similar cases of severe vision loss from isolated bacterial sinusitis. In contrast to previously published cases, our patient presented with good vision yet deteriorated to no light perception despite appropriate treatment. Conclusions and importance: Orbital apex syndrome can present as a constellation of cranial neuropathies including optic neuropathy from conditions affecting the orbital apex. Although vision loss remained permanent, prompt initiation of broad-spectrum antibiotics and antifungals and surgical intervention prevented further extension of infection into intracranial structures. Keywords: Orbital apex syndrome, Optic neuropathy
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- 2018
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11. Canthal V-plasty for Floppy Eyelid Surgery
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Margaret E. Phillips, MD, Brian T. Fowler, MD, Stephen C. Dryden, MD, and James C. Fleming, MD
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Surgery ,RD1-811 - Abstract
Summary:. The purpose of this article is to present a modified approach to the reconstruction of the upper and lower eyelids in floppy eyelid syndrome. A retrospective chart review was performed on all floppy eyelid patients who underwent simultaneous tightening of the upper and lower eyelid with a lateral tarsal strip, using a V-shaped incision in the lateral canthus, at University of Tennessee Hamilton Eye Institute from 2011 to 2012. Preoperative symptoms, surgical outcomes, complication rates, and postoperative symptoms were recorded. Nine eyes of 7 patients who underwent surgical correction for symptomatic floppy eyelids were included. All patients noted improvement in symptoms postoperatively, after reduction in the laxity of the upper and lower eyelid. Postoperative complications included buried lashes in the lateral canthus in 1 eye and a pyogenic granuloma in the lateral canthus of 1 eye. An excellent cosmetic outcome was noted in 78% (7/9) of eyes. No patients reported dissatisfaction nor required secondary surgical correction. The lateral canthal “V” incision provides an additional approach in the successful management of floppy eyelid syndrome involving the upper and lower eyelids. The design of the incision allows for excellent exposure of the lateral canthus for shortening of the eyelids with tarsal strip fixation, and it preserves the lateral canthal skin and canthus architecture. Further, the “V” incision is easily continued into the eyelid crease for blepharoplasty and ptosis repair when necessary.
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- 2019
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12. Evaluating the Impact of Open Access at Berkeley: Results from the 2015 Survey of Berkeley Research Impact Initiative (BRII) Funding Recipients.
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Samantha Teplitzky and Margaret L. Phillips
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- 2016
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13. Identification of New Human Malaria Parasite Plasmodium falciparum Dihydroorotate Dehydrogenase Inhibitors by Pharmacophore and Structure-Based Virtual Screening.
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Elumalai Pavadai, Farah El Mazouni, Sergio Wittlin, Carmen de Kock, Margaret A. Phillips, and Kelly Chibale
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- 2016
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14. Functional polyamine metabolic enzymes and pathways encoded by the virosphere
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Bin Li, Jue Liang, Hamid R. Baniasadi, Margaret A. Phillips, and Anthony J. Michael
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Multidisciplinary - Abstract
Viruses produce more viruses by manipulating the metabolic and replication systems of their host cells. Many have acquired metabolic genes from ancestral hosts and use the encoded enzymes to subvert host metabolism. The polyamine spermidine is required for bacteriophage and eukaryotic virus replication, and herein, we have identified and functionally characterized diverse phage- and virus-encoded polyamine metabolic enzymes and pathways. These include pyridoxal 5′-phosphate (PLP)-dependent ornithine decarboxylase (ODC), pyruvoyl-dependent ODC and arginine decarboxylase (ADC), arginase, S -adenosylmethionine decarboxylase (AdoMetDC/ speD ), spermidine synthase, homospermidine synthase, spermidine N -acetyltransferase, and N -acetylspermidine amidohydrolase. We identified homologs of the spermidine-modified translation factor eIF5a encoded by giant viruses of the Imitervirales . Although AdoMetDC/ speD is prevalent among marine phages, some homologs have lost AdoMetDC activity and have evolved into pyruvoyl-dependent ADC or ODC. The pelagiphages that encode the pyruvoyl-dependent ADCs infect the abundant ocean bacterium Candidatus Pelagibacter ubique , which we have found encodes a PLP-dependent ODC homolog that has evolved into an ADC, indicating that infected cells would contain both PLP- and pyruvoyl-dependent ADCs. Complete or partial spermidine or homospermidine biosynthetic pathways are found encoded in the giant viruses of the Algavirales and Imitervirales , and in addition, some viruses of the Imitervirales can release spermidine from the inactive N -acetylspermidine. In contrast, diverse phages encode spermidine N -acetyltransferase that can sequester spermidine into its inactive N -acetyl form. Together, the virome-encoded enzymes and pathways for biosynthesis and release or biochemical sequestration of spermidine or its structural analog homospermidine consolidate and expand evidence supporting an important and global role of spermidine in virus biology.
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- 2023
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15. A dual regulatory circuit consisting of S-adenosylmethionine decarboxylase protein and its reaction product controls expression of the paralogous activator prozyme in Trypanosoma brucei.
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Manish M Patel, Oleg A Volkov, Christopher Leija, Andrew Lemoff, and Margaret A Phillips
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Polyamines are essential for cell growth of eukaryotes including the etiologic agent of human African trypanosomiasis (HAT), Trypanosoma brucei. In trypanosomatids, a key enzyme in the polyamine biosynthetic pathway, S-adenosylmethionine decarboxylase (TbAdoMetDC) heterodimerizes with a unique catalytically-dead paralog called prozyme to form the active enzyme complex. In higher eukaryotes, polyamine metabolism is subject to tight feedback regulation by spermidine-dependent mechanisms that are absent in trypanosomatids. Instead, in T. brucei an alternative regulatory strategy based on TbAdoMetDC prozyme has evolved. We previously demonstrated that prozyme protein levels increase in response to loss of TbAdoMetDC activity. Herein, we show that prozyme levels are under translational control by monitoring incorporation of deuterated leucine into nascent prozyme protein. We furthermore identify pathway factors that regulate prozyme mRNA translation. We find evidence for a regulatory feedback mechanism in which TbAdoMetDC protein and decarboxylated AdoMet (dcAdoMet) act as suppressors of prozyme translation. In TbAdoMetDC null cells expressing the human AdoMetDC enzyme, prozyme levels are constitutively upregulated. Wild-type prozyme levels are restored by complementation with either TbAdoMetDC or an active site mutant, suggesting that TbAdoMetDC possesses an enzyme activity-independent function that inhibits prozyme translation. Depletion of dcAdoMet pools by three independent strategies: inhibition/knockdown of TbAdoMetDC, knockdown of AdoMet synthase, or methionine starvation, each cause prozyme upregulation, providing independent evidence that dcAdoMet functions as a metabolic signal for regulation of the polyamine pathway in T. brucei. These findings highlight a potential regulatory paradigm employing enzymes and pseudoenzymes that may have broad implications in biology.
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- 2018
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16. Repurposed dihydroorotate dehydrogenase inhibitors with efficacy against drug-resistant Acinetobacter baumannii
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Thomas A. Russo, Timothy C. Umland, Xiaoyi Deng, Farah El Mazouni, Sreekanth Kokkonda, Ruth Olson, Ulrike Carlino-MacDonald, Janet Beanan, Cassandra L. Alvarado, Diana R. Tomchick, Alan Hutson, Hong Chen, Bruce Posner, Pradipsinh K. Rathod, Susan A. Charman, and Margaret A. Phillips
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Multidisciplinary - Abstract
New antimicrobials are needed for the treatment of extensively drug-resistant Acinetobacter baumannii . The de novo pyrimidine biosynthetic enzyme dihydroorotate dehydrogenase (DHODH) is a validated drug target for malaria and human autoimmune diseases. We provide genetic evidence that A. baumannii DHODH ( Ab DHODH) is essential for bacterial survival in rodent infection models. We chemically validate the target by repurposing a unique library of ~450 triazolopyrimidine/imidazopyrimidine analogs developed for our malaria DHODH program to identify 21 compounds with submicromolar activity on Ab DHODH. The most potent (DSM186, DHODH IC 50 28 nM) had a minimal inhibitory concentration of ≤1 µg/ml against geographically diverse A. baumannii strains, including meropenem-resistant isolates. A structurally related analog (DSM161) with a long in vivo half-life conferred significant protection in the neutropenic mouse thigh infection model. Encouragingly, the development of resistance to these compounds was not identified in vitro or in vivo. Lastly, the X-ray structure of Ab DHODH bound to DSM186 was solved to 1.4 Å resolution. These data support the potential of Ab DHODH as a drug target for the development of antimicrobials for the treatment of A. baumannii and potentially other high-risk bacterial infections.
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- 2022
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17. The Infrared Spectrum of Matrix-Isolated Ethanethiol
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Margaret D. Phillips, Daniel E. Anderson, Jane C. Nelson, Hamilton T. Evans, Sarah E. Dutton, and AnGayle K. Vasiliou
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- 2022
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18. A fast-killing tyrosine amide ((S)-SW228703) with blood and liver-stage antimalarial activity associated with the Cyclic Amine Resistance Locus (PfCARL)
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Leah S. Imlay, Aloysus K. Lawong, Suraksha Gahalawat, Ashwani Kumar, Chao Xing, Nimisha Mittal, Sergio Wittlin, Alisje Churchyard, Hanspeter Niederstrasser, Benigno Crespo-Fernandez, Bruce Posner, Francisco Javier Gamo, Jake Baum, Elizabeth A. Winzeler, Benoît Laleu, Joseph M. Ready, and Margaret A. Phillips
- Abstract
Current malaria treatments are threatened by drug resistance and new drugs are urgently needed. In a phenotypic screen for new antimalarials, we identified (S)-SW228703 ((S)-SW703), a tyrosine amide with asexual blood and liver stage activity and a fast-killing profile. Resistance to (S)-SW703 is associated with mutations inPlasmodium falciparumcyclic amine resistance locus (PfCARL) andP. falciparumacetyl CoA transporter (PfACT), similarly to several other compounds that share features such as fast activity and liver-stage activity. Compounds with these resistance mechanisms are thought to act in the ER, though their target(s) are unknown. The tyramine of (S)-SW703 is shared with some reportedPfCARL-associated compounds; however, we observed that strict S-stereochemistry was required for activity of (S)-SW703, suggesting differences in mechanism of action or binding mode. (S)-SW703 provides a new chemical series with broad activity on multiple life-cycle stages and a fast-killing mechanism of action, available for lead optimization to generate new treatments for malaria.
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- 2022
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19. Novel Antimalarial Tetrazoles and Amides Active against the Hemoglobin Degradation Pathway in Plasmodium falciparum
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Sergio Wittlin, Sachel Mok, Benoît Laleu, Anwu Zhou, Susan A. Charman, Margaret A. Phillips, Tomas Yeo, David A. Fidock, Alisje Churchyard, Joseph M. Ready, Francisco-Javier Gamo, Ioanna Deni, John Okombo, Bruce A. Posner, Aloysus K. Lawong, Jessica L. Bridgford, Elizabeth A. Winzeler, Benigno Crespo, Michael J. Palmer, Hanspeter Niederstrasser, Josefine Striepen, Suraksha Gahalawat, Jake Baum, and Nimisha Mittal
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0303 health sciences ,biology ,Chemistry ,Phenotypic screening ,Hemozoin ,Druggability ,Plasmodium falciparum ,Drug resistance ,Pharmacology ,medicine.disease ,biology.organism_classification ,01 natural sciences ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,03 medical and health sciences ,Mechanism of action ,Chloroquine ,parasitic diseases ,Drug Discovery ,medicine ,Molecular Medicine ,medicine.symptom ,Malaria ,030304 developmental biology ,medicine.drug - Abstract
Malaria control programs continue to be threatened by drug resistance. To identify new antimalarials, we conducted a phenotypic screen and identified a novel tetrazole-based series that shows fast-kill kinetics and a relatively low propensity to develop high-level resistance. Preliminary structure-activity relationships were established including identification of a subseries of related amides with antiplasmodial activity. Assaying parasites with resistance to antimalarials led us to test whether the series had a similar mechanism of action to chloroquine (CQ). Treatment of synchronized Plasmodium falciparum parasites with active analogues revealed a pattern of intracellular inhibition of hemozoin (Hz) formation reminiscent of CQ's action. Drug selections yielded only modest resistance that was associated with amplification of the multidrug resistance gene 1 (pfmdr1). Thus, we have identified a novel chemical series that targets the historically druggable heme polymerization pathway and that can form the basis of future optimization efforts to develop a new malaria treatment.
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- 2021
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20. Nonionizing Radiation: Broadband Optical
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Margaret L. Phillips and Allene H. Butler
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- 2021
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21. Total synthesis of (+)-spiroindimicin A and congeners unveils their antiparasitic activity
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Sneha Ray, Margaret A. Phillips, Prema L. Mallipeddi, Myles W Smith, Zhen Zhang, Leah Imlay, Lauren T Callaghan, Dawn M. Wetzel, Hanspeter Niederstrasser, and Bruce A. Posner
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Indole test ,010405 organic chemistry ,Stereochemistry ,Chemistry ,Antiparasitic ,medicine.drug_class ,Total synthesis ,General Chemistry ,010402 general chemistry ,01 natural sciences ,0104 chemical sciences ,Stereocenter ,Human health ,Lynamicin D ,medicine - Abstract
The spiroindimicins are a unique class of chlorinated indole alkaloids characterized by three heteroaromatic rings structured around a congested spirocyclic stereocenter. Here, we report the first total synthesis of (+)-spiroindimicin A, which bears a challenging C-3′/C-5′′-linked spiroindolenine. We detail our initial efforts to effect a biomimetic oxidative spirocyclization from its proposed natural precursor, lynamicin D, and describe how these studies shaped our final abiotic 9-step solution to this complex alkaloid built around a key Pd-catalyzed asymmetric spirocyclization. Scalable access to spiroindimicins A, H, and their congeners has enabled discovery of their activity against several parasites relevant to human health, providing potential starting points for new therapeutics for the neglected tropical diseases leishmaniasis and African sleeping sickness., Spiroindimicins A and H have been synthesized for the first time via a key palladium-catalyzed spirocyclization. Access to these alkaloids and several congeners has allowed the discovery of their antiparasitic properties.
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- 2021
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22. Relief of autoinhibition by conformational switch explains enzyme activation by a catalytically dead paralog
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Oleg A Volkov, Lisa Kinch, Carson Ariagno, Xiaoyi Deng, Shihua Zhong, Nick Grishin, Diana R Tomchick, Zhe Chen, and Margaret A Phillips
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Trypanosome brucei ,allostery ,polyamines ,pseudo enzymes ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Catalytically inactive enzyme paralogs occur in many genomes. Some regulate their active counterparts but the structural principles of this regulation remain largely unknown. We report X-ray structures of Trypanosoma brucei S-adenosylmethionine decarboxylase alone and in functional complex with its catalytically dead paralogous partner, prozyme. We show monomeric TbAdoMetDC is inactive because of autoinhibition by its N-terminal sequence. Heterodimerization with prozyme displaces this sequence from the active site through a complex mechanism involving a cis-to-trans proline isomerization, reorganization of a β-sheet, and insertion of the N-terminal α-helix into the heterodimer interface, leading to enzyme activation. We propose that the evolution of this intricate regulatory mechanism was facilitated by the acquisition of the dimerization domain, a single step that can in principle account for the divergence of regulatory schemes in the AdoMetDC enzyme family. These studies elucidate an allosteric mechanism in an enzyme and a plausible scheme by which such complex cooperativity evolved.
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- 2016
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23. Pyrimidine Salvage Enzymes Are Essential for De Novo Biosynthesis of Deoxypyrimidine Nucleotides in Trypanosoma brucei.
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Christopher Leija, Filipa Rijo-Ferreira, Lisa N Kinch, Nick V Grishin, Nicole Nischan, Jennifer J Kohler, Zeping Hu, and Margaret A Phillips
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
The human pathogenic parasite Trypanosoma brucei possess both de novo and salvage routes for the biosynthesis of pyrimidine nucleotides. Consequently, they do not require salvageable pyrimidines for growth. Thymidine kinase (TK) catalyzes the formation of dTMP and dUMP and is one of several salvage enzymes that appear redundant to the de novo pathway. Surprisingly, we show through analysis of TK conditional null and RNAi cells that TK is essential for growth and for infectivity in a mouse model, and that a catalytically active enzyme is required for its function. Unlike humans, T. brucei and all other kinetoplastids lack dCMP deaminase (DCTD), which provides an alternative route to dUMP formation. Ectopic expression of human DCTD resulted in full rescue of the RNAi growth phenotype and allowed for selection of viable TK null cells. Metabolite profiling by LC-MS/MS revealed a buildup of deoxypyrimidine nucleosides in TK depleted cells. Knockout of cytidine deaminase (CDA), which converts deoxycytidine to deoxyuridine led to thymidine/deoxyuridine auxotrophy. These unexpected results suggested that T. brucei encodes an unidentified 5'-nucleotidase that converts deoxypyrimidine nucleotides to their corresponding nucleosides, leading to their dead-end buildup in TK depleted cells at the expense of dTTP pools. Bioinformatics analysis identified several potential candidate genes that could encode 5'-nucleotidase activity including an HD-domain protein that we show catalyzes dephosphorylation of deoxyribonucleotide 5'-monophosphates. We conclude that TK is essential for synthesis of thymine nucleotides regardless of whether the nucleoside precursors originate from the de novo pathway or through salvage. Reliance on TK in the absence of DCTD may be a shared vulnerability among trypanosomatids and may provide a unique opportunity to selectively target a diverse group of pathogenic single-celled eukaryotes with a single drug.
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- 2016
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24. Evaluation of Antigens for Development of a Serological Test for Human African Trypanosomiasis.
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Sylvain Biéler, Harald Waltenberger, Michael P Barrett, Richard McCulloch, Jeremy C Mottram, Mark Carrington, Wilhelm Schwaeble, James McKerrow, Margaret A Phillips, Paul A Michels, Philippe Büscher, Jean-Charles Sanchez, Richard Bishop, Derrick R Robinson, James Bangs, Michael Ferguson, Barbara Nerima, Audrey Albertini, Gerd Michel, Magdalena Radwandska, and Joseph Mathu Ndung'u
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Medicine ,Science - Abstract
Control and elimination of human African trypanosomiasis (HAT) can be accelerated through the use of diagnostic tests that are more accurate and easier to deploy. The goal of this work was to evaluate the immuno-reactivity of antigens and identify candidates to be considered for development of a simple serological test for the detection of Trypanosoma brucei gambiense or T. b. rhodesiense infections, ideally both.The reactivity of 35 antigens was independently evaluated by slot blot and ELISA against sera from both T. b. gambiense and T. b. rhodesiense infected patients and controls. The antigens that were most reactive by both tests to T. b. gambiense sera were the membrane proteins VSG LiTat 1.3, VSG LiTat 1.5 and ISG64. Reactivity to T. b. rhodesiense sera was highest with VSG LiTat 1.3, VSG LiTat 1.5 and SRA, although much lower than with T. b. gambiense samples. The reactivity of all possible combinations of antigens was also calculated. When the slot blot results of 2 antigens were paired, a VSG LiTat 1.3- ISG75 combination performed best on T. b. gambiense sera, while a VSG LiTat 1.3-VSG LiTat 1.5 combination was the most reactive using ELISA. A combination of SRA and either VSG LiTat 1.3 or VSG LiTat 1.5 had the highest reactivity on T. b. rhodesiense sera according to slot blot, while in ELISA, pairing SRA with either GM6 or VSG LiTat 1.3 yielded the best results.This study identified antigens that were highly reactive to T. b. gambiense sera, which could be considered for developing a serological test for gambiense HAT, either individually or in combination. Antigens with potential for inclusion in a test for T. b. rhodesiense HAT were also identified, but because their reactivity was comparatively lower, a search for additional antigens would be required before developing a test for this form of the disease.
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- 2016
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25. Complete Vision Loss following Orbital Cellulitis Secondary to Acute Dacryocystitis
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Margaret L. Pfeiffer, Alexander Hacopian, Helen Merritt, Margaret E. Phillips, and Karina Richani
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Ophthalmology ,RE1-994 - Abstract
We present a case of a 50-year-old woman with acute dacryocystitis that was complicated by posterior rupture of the lacrimal sac causing an orbital cellulitis with subsequent visual acuity of no light perception. Upon presentation, she was immediately started on broad-spectrum antibiotics and underwent surgical incision and drainage of the lacrimal sac abscess but never regained vision. There are 4 cases in the literature of permanent severe vision loss from acute dacryocystitis. Prompt diagnosis and close monitoring of acute dacryocystitis are therefore essential to prevent extension into the orbit and possible optic nerve compromise.
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- 2016
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26. Lead Optimization of a Pyrrole-Based Dihydroorotate Dehydrogenase Inhibitor Series for the Treatment of Malaria
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Pradipsinh K. Rathod, Margaret A. Phillips, Michael J. Palmer, Sreekanth Kokkonda, Farah El Mazouni, John H. White, David Waterson, Iñigo Angulo-Barturen, María Belén Jiménez-Díaz, Maria Santos Martinez-Martinez, Helena Barker, Leticia Huertas-Valentin, Jenna McLaren, Santiago Ferrer, Jeremy N. Burrows, Shatrughan P Shahi, Karen L. White, Maria Jose Lafuente-Monasterio, Dave Matthews, Gong Chen, Francis C. K. Chiu, David M. Shackleford, Elly Crighton, Kasiram Katneni, Xiaoyi Deng, Sergio Wittlin, Diana R. Tomchick, Susan A. Charman, and Rajesh Chittimalla
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Male ,Oxidoreductases Acting on CH-CH Group Donors ,Plasmodium falciparum ,Plasmodium vivax ,Population ,Dihydroorotate Dehydrogenase ,Mice, SCID ,Drug resistance ,Pharmacology ,Crystallography, X-Ray ,01 natural sciences ,Article ,Antimalarials ,Structure-Activity Relationship ,03 medical and health sciences ,Dogs ,Parasitic Sensitivity Tests ,Cell Line, Tumor ,parasitic diseases ,Drug Discovery ,medicine ,Animals ,Humans ,Structure–activity relationship ,Pyrroles ,Enzyme Inhibitors ,Malaria, Falciparum ,education ,030304 developmental biology ,Dihydroorotate Dehydrogenase Inhibitor ,0303 health sciences ,education.field_of_study ,Molecular Structure ,biology ,Chemistry ,biology.organism_classification ,medicine.disease ,Rats ,0104 chemical sciences ,010404 medicinal & biomolecular chemistry ,Microsomes, Liver ,Dihydroorotate dehydrogenase ,Molecular Medicine ,Female ,Malaria ,Protein Binding - Abstract
Malaria puts at risk nearly half the world's population and causes high mortality in sub-Saharan Africa, while drug resistance threatens current therapies. The pyrimidine biosynthetic enzyme dihydroorotate dehydrogenase (DHODH) is a validated target for malaria treatment based on our finding that triazolopyrimidine DSM265 (1) showed efficacy in clinical studies. Herein, we describe optimization of a pyrrole-based series identified using a target-based DHODH screen. Compounds with nanomolar potency versus Plasmodium DHODH and Plasmodium parasites were identified with good pharmacological properties. X-ray studies showed that the pyrroles bind an alternative enzyme conformation from 1 leading to improved species selectivity versus mammalian enzymes and equivalent activity on Plasmodium falciparum and Plasmodium vivax DHODH. The best lead DSM502 (37) showed in vivo efficacy at similar levels of blood exposure to 1, although metabolic stability was reduced. Overall, the pyrrole-based DHODH inhibitors provide an attractive alternative scaffold for the development of new antimalarial compounds.
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- 2020
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27. What Should We Preserve? The Question for Heritage Libraries in a Digital World.
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Margaret E. Phillips
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- 2005
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28. A Teach-Discover-Treat Application of ZincPharmer: An Online Interactive Pharmacophore Modeling and Virtual Screening Tool.
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David Ryan Koes, Nicolas A Pabon, Xiaoyi Deng, Margaret A Phillips, and Carlos J Camacho
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Medicine ,Science - Abstract
The 2012 Teach-Discover-Treat (TDT) community-wide experiment provided a unique opportunity to test prospective virtual screening protocols targeting the anti-malarial target dihydroorotate dehydrogenase (DHODH). Facilitated by ZincPharmer, an open access online interactive pharmacophore search of the ZINC database, the experience resulted in the development of a novel classification scheme that successfully predicted the bound structure of a non-triazolopyrimidine inhibitor, as well as an overall hit rate of 27% of tested active compounds from multiple novel chemical scaffolds. The general approach entailed exhaustively building and screening sparse pharmacophore models comprising of a minimum of three features for each bound ligand in all available DHODH co-crystals and iteratively adding features that increased the number of known binders returned by the query. Collectively, the TDT experiment provided a unique opportunity to teach computational methods of drug discovery, develop innovative methodologies and prospectively discover new compounds active against DHODH.
- Published
- 2015
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29. Development of a biomarker to monitor target engagement after treatment with dihydroorotate dehydrogenase inhibitors
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Michael A, Pontikos, Christopher, Leija, Zhiyu, Zhao, Xiaoyu, Wang, Jessica, Kilgore, Belen, Tornesi, Nicole, Adenmatten, Margaret A, Phillips, and Noelle S, Williams
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Mammals ,Pharmacology ,Oxidoreductases Acting on CH-CH Group Donors ,Toluidines ,Plasmodium falciparum ,Dihydroorotate Dehydrogenase ,Hydroxybutyrates ,Biochemistry ,Mice ,Pyrimidines ,Crotonates ,Nitriles ,Animals ,Humans ,Prodrugs ,Enzyme Inhibitors ,Biomarkers ,Leflunomide - Abstract
Dihydroorotate dehydrogenase (DHODH) catalyzes a key step in pyrimidine biosynthesis and has recently been validated as a therapeutic target for malaria through clinical studies on the triazolopyrimidine-based Plasmodium DHODH inhibitor DSM265. Selective toxicity towards Plasmodium species could be achieved because malaria parasites lack pyrimidine salvage pathways, and DSM265 selectively inhibits Plasmodium DHODH over the human enzyme. However, while DSM265 does not inhibit human DHODH, it inhibits DHODH from several preclinical species, including mice, suggesting that toxicity could result from on-target DHODH inhibition in those species. We describe here the use of dihydroorotate (DHO) as a biomarker of DHODH inhibition. Treatment of mammalian cells with DSM265 or the mammalian DHODH inhibitor teriflunomide led to increases in DHO where the extent of biomarker buildup correlated with both dose and inhibitor potency on DHODH. Treatment of mice with leflunomide (teriflunomide prodrug) caused a large dose-dependent buildup of DHO in blood (up to 16-fold) and urine (up to 5,400-fold) that was not observed for mice treated with DSM265. Unbound plasma teriflunomide levels reached 20-85-fold above the mouse DHODH ICsub50/sub, while free DSM265 levels were only 1.6-4.2-fold above, barely achieving ∼ ICsub90/subconcentrations, suggesting that unbound DSM265 plasma levels are not sufficient to block the pathway in vivo. Thus, any toxicity associated with DSM265 treatment in mice is likely caused by off-target mechanisms. The identification of a robust biomarker for mammalian DHODH inhibition represents an important advance to generally monitor for on-target effects in preclinical and clinical applications of DHODH inhibitors used to treat human disease.
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- 2022
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30. Discovery of ancestral L-ornithine and L-lysine decarboxylases reveals parallel, pseudoconvergent evolution of polyamine biosynthesis
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Margaret A. Phillips, Anthony J. Michael, Bin Li, Jue Liang, and Colin Hanfrey
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Arginine ,ODC, L-ornithine decarboxylase ,Carboxy-Lyases ,Auxotrophy ,Archaeal Proteins ,arginine ,Euryarchaeota ,Ornithine Decarboxylase ,Biochemistry ,Evolution, Molecular ,chemistry.chemical_compound ,Bacterial Proteins ,polyamine ,Alanine racemase ,putrescine ,ADC, L-arginine decarboxylase ,Molecular Biology ,Arginine deiminase ,agmatine ,chemistry.chemical_classification ,lysine ,Bacteria ,cadaverine ,Biogenic Polyamines ,O/LDC, bifunctional lysine/ornithine decarboxylase ,AIH, agmatine iminohydrolase ,Cell Biology ,Ornithine ,Recombinant Proteins ,Amino acid ,AR-fold, alanine racemase-fold ,chemistry ,ornithine ,decarboxylase ,AAT-fold, aspartate aminotransferase-fold ,Putrescine ,LDC, L-lysine decarboxylase ,REC, receiver domain of bacterial response regulator ,Polyamine ,NCPAH, N-carbamoylputrescine amidohydrolase ,Research Article - Abstract
Polyamines are fundamental molecules of life, and their deep evolutionary history is reflected in extensive biosynthetic diversification. The polyamines putrescine, agmatine, and cadaverine are produced by pyridoxal 5′-phosphate-dependent L-ornithine, L-arginine, and L-lysine decarboxylases (ODC, ADC, LDC), respectively, from both the alanine racemase (AR) and aspartate aminotransferase (AAT) folds. Two homologous forms of AAT-fold decarboxylase are present in bacteria: an ancestral form and a derived, acid-inducible extended form containing an N-terminal fusion to the receiver-like domain of a bacterial response regulator. Only ADC was known from the ancestral form and limited to the Firmicutes phylum, whereas extended forms of ADC, ODC, and LDC are present in Proteobacteria and Firmicutes. Here, we report the discovery of ancestral form ODC, LDC, and bifunctional O/LDC and extend the phylogenetic diversity of functionally characterized ancestral ADC, ODC, and LDC to include phyla Fusobacteria, Caldiserica, Nitrospirae, and Euryarchaeota. Using purified recombinant enzymes, we show that these ancestral forms have a nascent ability to decarboxylate kinetically less preferred amino acid substrates with low efficiency, and that product inhibition primarily affects preferred substrates. We also note a correlation between the presence of ancestral ODC and ornithine/arginine auxotrophy and link this with a known symbiotic dependence on exogenous ornithine produced by species using the arginine deiminase system. Finally, we show that ADC, ODC, and LDC activities emerged independently, in parallel, in the homologous AAT-fold ancestral and extended forms. The emergence of the same ODC, ADC, and LDC activities in the nonhomologous AR-fold suggests that polyamine biosynthesis may be inevitable.
- Published
- 2021
31. Visual Outcomes of Patients With Retrobulbar Hemorrhage Undergoing Lateral Canthotomy and Cantholysis
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Alice Z Chuang, Lucy A Bailey, Karina Richani, Alexandra J. van Brummen, Margaret E Phillips, and Layla M Ghergherehchi
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Adult ,Male ,Intraocular pressure ,Visual acuity ,genetic structures ,Decompression ,Visual Acuity ,Compartment Syndromes ,Retrobulbar Hemorrhage ,03 medical and health sciences ,0302 clinical medicine ,Orbital Diseases ,medicine ,Humans ,In patient ,Aged ,Retrospective Studies ,business.industry ,Retrospective cohort study ,General Medicine ,Middle Aged ,Decompression, Surgical ,eye diseases ,Decreased vision ,Ophthalmology ,Anesthesia ,030221 ophthalmology & optometry ,Regression Analysis ,Female ,Surgery ,Lateral canthotomy ,medicine.symptom ,business - Abstract
Purpose Evaluate visual outcomes in relation to time from injury to intervention in patients who undergo lateral canthotomy with cantholysis (LCC) for retrobulbar hemorrhage (RBH). Methods Retrospective study of patients with orbital compartment syndrome (OCS) secondary to RBH who underwent LCC. OCS due to RBH was defined by a combination of decreased vision, proptosis, resistance to retropulsion, increased intraocular pressure, and relative afferent pupillary defect. Time from injury to intervention and change in visual acuity were calculated, with regression analysis identifying predictors of vision recovery. Results Fifteen participants were included. Three (20%) participants presented with no light perception, 7 (47%) with count fingers (CF) to light perception, and 5 (33%) with better than count fingers vision. All 5 participants who had LCC within 3 hours (twice the standard 90 minutes) gained some vision, and 6 of 10 participants who had LCC after 3 hours recovered some vision. The latest intervention with visual acuity improvement was performed 9 hours postinjury. Of 3 participants who presented with no light perception vision, 1 regained vision to 20/40 (intervention 1.7 hours postinjury), and 2 did not regain any vision (interventions at 5 and 8.7 hours postinjury). Duration from injury to intervention was associated with decreased amount of vision recovery (P = 0.03). Conclusions Increased time to intervention with LCC was associated with less vision recovery after OCS from RBH. However, over half of participants with intervention more than 90 minutes after injury still showed visual acuity improvement. The authors recommend LCC in all patients who present with OCS regardless of the time since injury.Patients with orbital compartment syndrome may see visual recovery after lateral canthotomy and cantholysis, even if performed outside of the previously accepted 3-hour window.
- Published
- 2019
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32. Screening Criteria for Detecting Severe Ocular Injuries in the Setting of Orbital Fractures
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Margaret L. Pfeiffer, Alice Z Chuang, Helen A. Merritt, Thai H Do, Karina Richani, and Margaret E. Phillips
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Adult ,Male ,Visual acuity ,genetic structures ,Vision Disorders ,Diagnostic Techniques, Ophthalmological ,Sensitivity and Specificity ,Article ,Young Adult ,03 medical and health sciences ,Eye Injuries ,0302 clinical medicine ,Blurred vision ,Predictive Value of Tests ,medicine ,Humans ,Mass Screening ,Young adult ,Orbital Fracture ,Orbital Fractures ,Aged ,Retrospective Studies ,Receiver operating characteristic ,business.industry ,Incidence ,Incidence (epidemiology) ,Retrospective cohort study ,General Medicine ,Middle Aged ,eye diseases ,Ophthalmology ,Logistic Models ,Anesthesia ,Predictive value of tests ,030221 ophthalmology & optometry ,Female ,Surgery ,sense organs ,medicine.symptom ,business - Abstract
PURPOSE Define incidence of severe ocular trauma in orbital fracture patients and determine if ocular signs and symptoms are useful predictors of severe ocular injuries. METHODS Retrospective chart review was performed on all patients with orbital fractures between April 1, 2013, and December 31, 2014. Patients were included if they had radiographic evidence of acute fracture of at least one orbital wall and were evaluated by the Ophthalmology service. Demographics, concurrent injury data, and symptoms and signs of ocular trauma were collected. Concurrent ocular injuries were grouped by severity. Predictive signs or symptoms for severe ocular trauma were identified by stepwise logistic regression analysis. The threshold point for predictive signs and symptoms was detected by a receiver operating characteristic (ROC). RESULTS Five-hundred-twelve patients were included. The most common mechanisms of injury were assault (39%), fall (25%), and motor vehicle accident (21%). The incidence of any concurrent ocular trauma was 75% (383/512), with 14% (70/512) being severe. Four signs and symptoms were predictors of severity: blurred vision (P < 0.0001), pain with eye movements (P < 0.0001), visual acuity worse than 20/40 in the ipsilateral eye (P < 0.001), and restricted motility (P < 0.001). The presence of 2 or more of these signs or symptoms was predictive of severe ocular trauma with high sensitivity (91%) and specificity (86%). CONCLUSIONS In cooperative patients with acute orbital wall fractures, the presence of 2 or more signs or symptoms is predictive of severe ocular trauma and necessitates the need for urgent ophthalmic consultation.Severe ocular injury associated with orbital wall fracture is more likely in patients with 2 or more ophthalmic signs or symptoms.
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- 2019
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33. Implementation of the Critical Care Pain Observation Tool increases the frequency of pain assessment for noncommunicative ICU patients
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Vijo Kuruvilla, Margaret Louise Phillips, and Michael Bailey
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Adult ,Male ,medicine.medical_specialty ,Critical Care ,Sedation ,Analgesic ,Nursing assessment ,Emergency Nursing ,Critical Care Nursing ,03 medical and health sciences ,0302 clinical medicine ,Pain assessment ,Intensive care ,medicine ,Humans ,Hypnotics and Sedatives ,Pain Management ,030212 general & internal medicine ,Nursing Assessment ,Pain Measurement ,Retrospective Studies ,Observer Variation ,Analgesics ,business.industry ,030208 emergency & critical care medicine ,Guideline ,Intensive Care Units ,Neuropathic pain ,Physical therapy ,Female ,Observational study ,medicine.symptom ,business - Abstract
Background Pain is a common stressor for ICU patients, necessitating routine assessment. For patients who are unable to communicate, self-report tools are unsuitable, and the use of an observational tool is required to assess pain appropriately. The Critical Care Pain Observation Tool (CPOT) is the most reliable tool currently available to assess pain in these patients. We investigated whether the implementation of the CPOT in one Australian ICU could increase frequency of appropriate pain assessments, and if this would affect the administration of analgesia and sedation. Methods In this before and after study, we first performed a retrospective chart audit on 441 adult ICU patient charts, over 49 days. Data collected included frequency and type of pain assessments, sedation and analgesia administered, communication and CAM-ICU status, and bedside nurse-perceived pain. During the implementation phase, new policy and guideline documents were released, and ICU charts were redesigned to incorporate the CPOT. All nursing staff attended an education session on pain assessment and correct use of the CPOT. The chart audit was repeated, capturing 344 charts over 43 days. Results Mean total assessments in 24 hours increased from 7.2 to 7.9 for communicative, 3.0 to 8.9 for non-communicative, and 5.1 to 9.1 for transitioning patients. For non-communicative patients there was a significant increase in observational assessments including the CPOT (1.7 to 8.3), and a decrease in inappropriate use of self-report tools (1.3 to 0.2). We also observed significant increases in administration of paracetamol, opiates, propofol, patient-controlled analgesia, modified-release opiates, and neuropathic pain agents. Conclusions Implementation of the CPOT using standardised education and resources led to increased frequency of pain assessment, particularly for non-communicative patients. Appropriate observational assessments were also more frequently used for these patients. Analgesic administration generally increased, as did the use of propofol.
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- 2019
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34. Total Synthesis of (+)-Spiroindimicin A via Asymmetric Palladium-Catalyzed Spirocyclization
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Imlay L, Margaret A. Phillips, Callaghan L, Dawn M. Wetzel, Myles W Smith, Bruce A. Posner, Prema L. Mallipeddi, Ray S, Hanspeter Niederstrasser, and Zhang Z
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Indole test ,Lynamicin D ,Human health ,Chemistry ,Total synthesis ,chemistry.chemical_element ,Antiparasitic agent ,Combinatorial chemistry ,Catalysis ,Stereocenter ,Palladium - Abstract
The spiroindimicins are a unique class of chlorinated indole alkaloids characterized by three heteroaromatic rings structured around a congested spirocyclic stereocenter. Here, we report the first total synthesis of (+)-spiroindimicin A, which bears a challenging C-3’/C-5’’-linked spiroindolenine. We detail our initial efforts to effect a biomimetic oxidative spirocyclization from its proposed natural precursor, lynamicin D, and describe how these studies shaped our final abiotic 9-step solution to this complex alkaloid built around a key asymmetric Pd-catalyzed spirocyclization. Scalable access to spiroindimicins A, H, and their congeners has enabled discovery of their activity against several parasites relevant to human health, providing potential starting points for new therapeutics for the neglected tropical diseases leishmaniasis and African sleeping sickness.
- Published
- 2021
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35. Biochemical and Biophysical Characterization of Pharmacogenetic Variants of Human Cytochrome P450 2C9
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Sonia Parikh, Margaret A. Phillips, Manish B. Shah, Karen C. Glass, and Sam Boyson
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Genetics ,Computational biology ,Biology ,Molecular Biology ,Biochemistry ,Pharmacogenetics ,Biotechnology ,Human cytochrome - Published
- 2021
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36. Novel Antimalarial Tetrazoles and Amides Active against the Hemoglobin Degradation Pathway in
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Aloysus, Lawong, Suraksha, Gahalawat, John, Okombo, Josefine, Striepen, Tomas, Yeo, Sachel, Mok, Ioanna, Deni, Jessica L, Bridgford, Hanspeter, Niederstrasser, Anwu, Zhou, Bruce, Posner, Sergio, Wittlin, Francisco Javier, Gamo, Benigno, Crespo, Alisje, Churchyard, Jake, Baum, Nimisha, Mittal, Elizabeth, Winzeler, Benoît, Laleu, Michael J, Palmer, Susan A, Charman, David A, Fidock, Joseph M, Ready, and Margaret A, Phillips
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Hemeproteins ,Molecular Structure ,Plasmodium falciparum ,Tetrazoles ,Drug Resistance, Microbial ,Hep G2 Cells ,Amides ,Article ,Small Molecule Libraries ,Antimalarials ,Hemoglobins ,Structure-Activity Relationship ,Parasitic Sensitivity Tests ,parasitic diseases ,Humans - Abstract
Malaria control programs continue to be threatened by drug resistance. To identify new antimalarials we conducted a phenotypic screen and identified a novel tetrazole-based series that shows fast-kill kinetics and a relatively low propensity to develop high-level resistance. Preliminary structure activity relationships (SAR) were established including identification of a sub-series of related amides with antiplasmodial activity. Assaying parasites with resistance to antimalarials led us to test whether the series had a similar mechanism of action to chloroquine (CQ). Treatment of synchronized P. falciparum parasites with active analogs revealed a pattern of intracellular inhibition of hemozoin (Hz) formation reminiscent of CQ’s action. Drug selections yielded only modest resistance that was associated with amplification of the multidrug resistance gene 1 (pfmdr1). Thus, we have identified a novel chemical series that targets the historically druggable heme polymerization pathway, and that can form the basis of future optimization efforts to develop a new malaria treatment.
- Published
- 2021
37. Asexual populations of the human malaria parasite, Plasmodium falciparum, use a two-step genomic strategy to acquire accurate, beneficial DNA amplifications.
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Jennifer L Guler, Daniel L Freeman, Vida Ahyong, Rapatbhorn Patrapuvich, John White, Ramesh Gujjar, Margaret A Phillips, Joseph DeRisi, and Pradipsinh K Rathod
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Malaria drug resistance contributes to up to a million annual deaths. Judicious deployment of new antimalarials and vaccines could benefit from an understanding of early molecular events that promote the evolution of parasites. Continuous in vitro challenge of Plasmodium falciparum parasites with a novel dihydroorotate dehydrogenase (DHODH) inhibitor reproducibly selected for resistant parasites. Genome-wide analysis of independently-derived resistant clones revealed a two-step strategy to evolutionary success. Some haploid blood-stage parasites first survive antimalarial pressure through fortuitous DNA duplications that always included the DHODH gene. Independently-selected parasites had different sized amplification units but they were always flanked by distant A/T tracks. Higher level amplification and resistance was attained using a second, more efficient and more accurate, mechanism for head-to-tail expansion of the founder unit. This second homology-based process could faithfully tune DNA copy numbers in either direction, always retaining the unique DNA amplification sequence from the original A/T-mediated duplication for that parasite line. Pseudo-polyploidy at relevant genomic loci sets the stage for gaining additional mutations at the locus of interest. Overall, we reveal a population-based genomic strategy for mutagenesis that operates in human stages of P. falciparum to efficiently yield resistance-causing genetic changes at the correct locus in a successful parasite. Importantly, these founding events arise with precision; no other new amplifications are seen in the resistant haploid blood stage parasite. This minimizes the need for meiotic genetic cleansing that can only occur in sexual stage development of the parasite in mosquitoes.
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- 2013
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38. Anticancer properties of distinct antimalarial drug classes.
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Rob Hooft van Huijsduijnen, R Kiplin Guy, Kelly Chibale, Richard K Haynes, Ingmar Peitz, Gerhard Kelter, Margaret A Phillips, Jonathan L Vennerstrom, Yongyuth Yuthavong, and Timothy N C Wells
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Medicine ,Science - Abstract
We have tested five distinct classes of established and experimental antimalarial drugs for their anticancer potential, using a panel of 91 human cancer lines. Three classes of drugs: artemisinins, synthetic peroxides and DHFR (dihydrofolate reductase) inhibitors effected potent inhibition of proliferation with IC50s in the nM- low µM range, whereas a DHODH (dihydroorotate dehydrogenase) and a putative kinase inhibitor displayed no activity. Furthermore, significant synergies were identified with erlotinib, imatinib, cisplatin, dasatinib and vincristine. Cluster analysis of the antimalarials based on their differential inhibition of the various cancer lines clearly segregated the synthetic peroxides OZ277 and OZ439 from the artemisinin cluster that included artesunate, dihydroartemisinin and artemisone, and from the DHFR inhibitors pyrimethamine and P218 (a parasite DHFR inhibitor), emphasizing their shared mode of action. In order to further understand the basis of the selectivity of these compounds against different cancers, microarray-based gene expression data for 85 of the used cell lines were generated. For each compound, distinct sets of genes were identified whose expression significantly correlated with compound sensitivity. Several of the antimalarials tested in this study have well-established and excellent safety profiles with a plasma exposure, when conservatively used in malaria, that is well above the IC50s that we identified in this study. Given their unique mode of action and potential for unique synergies with established anticancer drugs, our results provide a strong basis to further explore the potential application of these compounds in cancer in pre-clinical or and clinical settings.
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- 2013
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39. Knowledge, Experience and a Dash of Rebellion: Dance Training in Australia
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Margaret J Phillips
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Dance ,Movement (music) ,business.industry ,media_common.quotation_subject ,Transition (fiction) ,Advertising ,Displacement (linguistics) ,Training (civil) ,Visual arts ,State (polity) ,Isolation (psychology) ,Medicine ,Adaptation (computer science) ,business ,media_common - Abstract
Dance training may be considered as the interweaving of two critical factors knowledge and experience. Consequently, while dance training in Australia is marked by lineages handed down from European and later, North American forebears, its pattern of forms and forces have been shaped by the experiences of the teachers, choreographers and performers who pursued dance within this continent. It is a story of cultural displacement, exploitation and adaptation where the most stereotypical characteristics distance and its associated state of isolation provide a promising point of departure to examine specific influences of place on the evolution of Australian dance training. Consequently, in a current day mapping of dance training in Australia, the transition from a private to a public system needs to be acknowledged, with private dance schools continuing to maintain a vital role in the pre-tertiary network. Indeed, composed movement is a language, different, but equally expressive as the language of words.
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- 2020
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40. Identification and Mechanistic Understanding of Dihydroorotate Dehydrogenase Point Mutations in Plasmodium falciparum that Confer in Vitro Resistance to the Clinical Candidate DSM265
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Xiaoyi Deng, Gustavo A. Afanador, Marcus C. S. Lee, David A. Fidock, Caroline L. Ng, Aloysus K. Lawong, Pradipsinh K. Rathod, Jade Bath, Satish K. Dhingra, John H. White, Diana R. Tomchick, Farah El Mazouni, and Margaret A. Phillips
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0301 basic medicine ,Oxidoreductases Acting on CH-CH Group Donors ,Plasmodium falciparum ,030106 microbiology ,Dihydroorotate Dehydrogenase ,Drug Resistance ,Drug resistance ,Crystallography, X-Ray ,medicine.disease_cause ,Plasmodium ,Article ,Antimalarials ,03 medical and health sciences ,parasitic diseases ,medicine ,Animals ,Humans ,Point Mutation ,Amino Acid Sequence ,Malaria, Falciparum ,Gene Editing ,Mutation ,Binding Sites ,biology ,Point mutation ,Triazoles ,medicine.disease ,biology.organism_classification ,Virology ,Pyrimidines ,030104 developmental biology ,Infectious Diseases ,Dihydroorotate dehydrogenase ,CRISPR-Cas Systems ,Malaria ,Atovaquone ,medicine.drug - Abstract
Malaria is one of the most challenging human infectious diseases and both prevention and control have been hindered by the development of Plasmodium falciparum resistance to existing therapies. Several new compounds with novel mechanisms are in clinical development for the treatment of malaria including DSM265, an inhibitor of Plasmodium dihydroorotate dehydrogenase. In order to explore the mechanisms by which resistance might develop to DSM265 in the field, we selected for DSM265-resistant P. falciparum parasites in vitro. Any of five different amino acid changes led to reduced efficacy on the parasite and to decreased DSM265 binding to P. falciparum DHODH. The DSM265-resistant parasites retained full sensitivity to atovaquone. All but one of the observed mutations were in the DSM265 binding site, and the remaining C276F was in the adjacent flavin cofactor site. The C276F mutation was previously identified in a recrudescent parasite during a Phase IIa clinical study. We confirmed that this mutation (and the related C276Y) accounted for the full level of observed DSM265 resistance by re-generating the mutation using CRISPR/Cas9 genome editing. X-ray structure analysis of the C276F mutant enzyme showed that conformational changes of nearby residues were required to accommodate the larger F276 residue, which in turn led to a restriction in the size of the DSM265 binding pocket. These findings underscore the importance of developing DSM265 as part of a combination therapy with other agents for successful use against malaria.
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- 2018
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41. Isoxazolopyrimidine-Based Inhibitors of Plasmodium falciparum Dihydroorotate Dehydrogenase with Antimalarial Activity
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Margaret A. Phillips, David M. Shackleford, Jayan T. Joseph, Susan A. Charman, Jeremy N. Burrows, Karen L. White, John H. White, Adolfo García-Pérez, Francisco-Javier Gamo, Jorge Fernández, Krishne Manjalanagara, Paul Rowland, Michael J. Palmer, Sreekanth Kokkonda, Farah El Mazouni, Pradipsinh K. Rathod, David Waterson, and Maria Jose Lafuente-Monasterio
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0301 basic medicine ,Drug discovery ,General Chemical Engineering ,Phenotypic screening ,030231 tropical medicine ,Plasmodium falciparum ,General Chemistry ,Drug resistance ,Biology ,Pharmacology ,medicine.disease ,biology.organism_classification ,3. Good health ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Pharmacokinetics ,In vivo ,medicine ,Dihydroorotate dehydrogenase ,Malaria - Abstract
Malaria kills nearly 0.5 million people yearly and impacts the lives of those living in over 90 countries where it is endemic. The current treatment programs are threatened by increasing drug resistance. Dihydroorotate dehydrogenase (DHODH) is now clinically validated as a target for antimalarial drug discovery as a triazolopyrimidine class inhibitor (DSM265) is currently undergoing clinical development. We discovered a related isoxazolopyrimidine series in a phenotypic screen, later determining that it targeted DHODH. To determine if the isoxazolopyrimidines could yield a drug candidate, we initiated hit-to-lead medicinal chemistry. Several potent analogues were identified, including a compound that showed in vivo antimalarial activity. The isoxazolopyrimidines were more rapidly metabolized than their triazolopyrimidine counterparts, and the pharmacokinetic data were not consistent with the goal of a single-dose treatment for malaria.
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- 2018
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42. Regulated expression of an essential allosteric activator of polyamine biosynthesis in African trypanosomes.
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Erin K Willert and Margaret A Phillips
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Abstract
Trypanosoma brucei is the causative agent of African sleeping sickness. The polyamine biosynthetic pathway has the distinction of being the target of the only clinically proven anti-trypanosomal drug with a known mechanism of action. Polyamines are essential for cell growth, and their metabolism is extensively regulated. However, trypanosomatids appear to lack the regulatory control mechanisms described in other eukaryotic cells. In T. brucei, S-adenosylmethionine decarboxylase (AdoMetDC) and ornithine decarboxylase (ODC) are required for the synthesis of polyamines and also for the unique redox-cofactor trypanothione. Further, trypanosomatid AdoMetDC is activated by heterodimer formation with a catalytically dead homolog termed prozyme, found only in these species. To study polyamine regulation in T. brucei, we generated inducible AdoMetDC RNAi and prozyme conditional knockouts in the mammalian blood form stage. Depletion of either protein led to a reduction in spermidine and trypanothione and to parasite death, demonstrating that prozyme activation of AdoMetDC is essential. Under typical growth conditions, prozyme concentration is limiting in comparison to AdoMetDC. However, both prozyme and ODC protein levels were significantly increased relative to stable transcript levels by knockdown of AdoMetDC or its chemical inhibition. Changes in protein stability do not appear to account for the increased steady-state protein levels, as both enzymes are stable in the presence of cycloheximide. These observations suggest that prozyme and ODC are translationally regulated in response to perturbations in the pathway. In conclusion, we describe the first evidence for regulation of polyamine biosynthesis in T. brucei and we demonstrate that the unique regulatory subunit of AdoMetDC is a key component of this regulation. The data support ODC and AdoMetDC as the key control points in the pathway and the likely rate-limiting steps in polyamine biosynthesis.
- Published
- 2008
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43. Histone H4 acetyllysine coordination by ATAD2 bromodomain
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Margaret A. Phillips
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Inorganic Chemistry ,Histone H4 ,chemistry.chemical_compound ,Structural Biology ,Chemistry ,Acetyllysine ,General Materials Science ,Physical and Theoretical Chemistry ,Condensed Matter Physics ,Biochemistry ,Bromodomain ,Cell biology - Published
- 2021
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44. Experimental Evaluation of Respirable Dust and Crystalline Silica Controls During Simulated Performance of Stone Countertop Fabrication Tasks With Powered Hand Tools
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Margaret L. Phillips, Chaolong Qi, Anthony T. Van, Danielle A. Hawley, and David L. Johnson
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Engineered stone ,Fabrication ,Materials science ,Silicosis ,Polishing ,Pilot Projects ,Air Pollutants, Occupational ,Article ,Respirable dust ,03 medical and health sciences ,chemistry.chemical_compound ,Engineering ,0302 clinical medicine ,Wetting Agents ,Occupational Exposure ,Silicon carbide ,Humans ,Inhalation Exposure ,Construction Materials ,business.industry ,Metallurgy ,Abrasive ,Public Health, Environmental and Occupational Health ,Dust ,Quartz ,Structural engineering ,030210 environmental & occupational health ,Ventilation ,Grinding ,Engineering controls ,030228 respiratory system ,chemistry ,business - Abstract
Objectives Workers who fabricate stone countertops using hand tools are at risk of silicosis from overexposure to respirable crystalline silica. This study explored the efficacy of simple engineering controls that can be used for dust suppression during use of hand tools by stone countertop fabricators. Methods Controlled experiments were conducted to measure whether wet methods and on-tool local exhaust ventilation (LEV) reduced respirable dust (RD) exposures during use of various powered hand tools on quartz-rich engineered stone. RD samples collected during edge grinding with a diamond cup wheel and a silicon carbide abrasive wheel were analyzed gravimetrically as well as by X-ray diffraction to determine silica content. A personal optical aerosol monitor was used simultaneously with the RD samples and also for rapid assessment of controls for polishing, blade cutting, and core drilling. Results On-tool LEV and sheet-flow-wetting were effective in reducing exposures, especially when used in combination. Sheet-flow-wetting with LEV reduced geometric mean exposures by as much as 95%. However, typical water-spray-wetting on a grinding cup was less effective when combined with LEV than without LEV. Mean silica content of RD samples from grinding operations was 53%, and respirable mass and silica mass were very highly correlated (r = 0.980). Optical concentration measures were moderately well correlated with gravimetric measures (r = 0.817), but on average the optical measures during a single trial using the factory calibration were only one-fifth the simultaneous gravimetric measures. Conclusions Sheet-flow-wetting combined with on-tool LEV is an effective engineering control for reducing RD exposures during engineered stone edge grinding and blade cutting. On the other hand, addition of LEV to some water-spray-wetted tools may reduce the effectiveness of the wet method.
- Published
- 2017
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45. Evisceration in patients with Sturge–Weber syndrome
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Margaret E. Phillips, Karina Richani, Helen A. Merritt, and Margaret L. Pfeiffer
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Male ,medicine.medical_specialty ,genetic structures ,medicine.medical_treatment ,Sturge–Weber syndrome ,Enucleation ,Blindness ,Prosthesis Implantation ,03 medical and health sciences ,0302 clinical medicine ,Sturge-Weber Syndrome ,medicine ,Eye Pain ,Humans ,In patient ,Scleral shell ,Evisceration (ophthalmology) ,Preoperative planning ,Oculoplastic surgeon ,Eye, Artificial ,business.industry ,Middle Aged ,medicine.disease ,eye diseases ,Surgery ,Ophthalmology ,030221 ophthalmology & optometry ,sense organs ,Implant ,business ,Eye Evisceration ,030217 neurology & neurosurgery ,Orbital Implants - Abstract
The management of blind, painful eyes in Sturge–Weber syndrome patients poses unique challenges to the oculoplastic surgeon. Intraocular and orbital vascular malformations and calcification may theoretically lead to unexpected hemorrhage and difficulty placing an implant in a calcified scleral shell. We present two cases of patients with Sturge–Weber syndrome with blind, painful eyes who underwent evisceration with silicone implant and discuss the relevant current literature. Both of our patients had uncomplicated surgeries and post-operative courses. Our literature review reveals that both evisceration and enucleation are viable surgical options for globe removal in Sturge–Weber syndrome, yet careful preoperative planning must be undertaken to minimize risk.
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- 2017
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46. Safety, tolerability, pharmacokinetics, and activity of the novel long-acting antimalarial DSM265: a two-part first-in-human phase 1a/1b randomised study
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James S, McCarthy, Julie, Lotharius, Thomas, Rückle, Stephan, Chalon, Margaret A, Phillips, Suzanne, Elliott, Silvana, Sekuloski, Paul, Griffin, Caroline L, Ng, David A, Fidock, Louise, Marquart, Noelle S, Williams, Nathalie, Gobeau, Lidiya, Bebrevska, Maria, Rosario, Kennan, Marsh, and Jörg J, Möhrle
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Adult ,Oxidoreductases Acting on CH-CH Group Donors ,Adolescent ,Plasmodium falciparum ,Australia ,Dihydroorotate Dehydrogenase ,Articles ,Middle Aged ,Triazoles ,Mefloquine ,Antimalarials ,Pyrimidines ,Infectious Diseases ,Double-Blind Method ,Humans ,Enzyme Inhibitors ,Malaria, Falciparum ,Half-Life ,New Zealand - Abstract
Summary Background DSM265 is a novel antimalarial that inhibits plasmodial dihydroorotate dehydrogenase, an enzyme essential for pyrimidine biosynthesis. We investigated the safety, tolerability, and pharmacokinetics of DSM265, and tested its antimalarial activity. Methods Healthy participants aged 18–55 years were enrolled in a two-part study: part 1, a single ascending dose (25–1200 mg), double-blind, randomised, placebo-controlled study, and part 2, an open-label, randomised, active-comparator controlled study, in which participants were inoculated with Plasmodium falciparum induced blood-stage malaria (IBSM) and treated with DSM265 (150 mg) or mefloquine (10 mg/kg). Primary endpoints were DSM265 safety, tolerability, and pharmacokinetics. Randomisation lists were created using a validated, automated system. Both parts were registered with the Australian New Zealand Clinical Trials Registry, number ACTRN12613000522718 (part 1) and number ACTRN12613000527763 (part 2). Findings In part 1, 73 participants were enrolled between April 12, 2013, and July 14, 2015 (DSM265, n=55; placebo, n=18). In part 2, nine participants were enrolled between Sept 30 and Nov 25, 2013 (150 mg DSM265, n=7; 10 mg/kg mefloquine, n=2). In part 1, 117 adverse events were reported; no drug-related serious or severe events were reported. The most common drug-related adverse event was headache. The mean DSM265 peak plasma concentration (Cmax) ranged between 1310 ng/mL and 34 800 ng/mL and was reached in a median time (tmax) between 1·5 h and 4 h, with a mean elimination half-life between 86 h and 118 h. In part 2, the log10 parasite reduction ratio at 48 h in the DSM265 (150 mg) group was 1·55 (95% CI 1·42–1·67) and in the mefloquine (10 mg/kg) group was 2·34 (2·17–2·52), corresponding to a parasite clearance half-life of 9·4 h (8·7–10·2) and 6·2 h (5·7–6·7), respectively. The median minimum inhibitory concentration of DSM265 in blood was estimated as 1040 ng/mL (range 552–1500), resulting in a predicted single efficacious dose of 340 mg. Parasite clearance was significantly faster in participants who received mefloquine than in participants who received DSM265 (p
- Published
- 2017
47. Orbital apex syndrome from bacterial sinusitis without orbital cellulitis
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Karina Richani, Margaret E. Phillips, Helen A. Merritt, Lucy A. Bailey, and Margaret L. Pfeiffer
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medicine.medical_specialty ,Orbital apex syndrome ,Visual acuity ,genetic structures ,Optic neuropathy ,03 medical and health sciences ,Cranial neuropathies ,0302 clinical medicine ,lcsh:Ophthalmology ,medicine ,030223 otorhinolaryngology ,Bacterial sinusitis ,Brief report ,business.industry ,Light perception ,medicine.disease ,eye diseases ,3. Good health ,Surgery ,Ophthalmology ,lcsh:RE1-994 ,030221 ophthalmology & optometry ,sense organs ,Orbital cellulitis ,medicine.symptom ,business ,Orbital apex - Abstract
Purpose: To describe a case of orbital apex syndrome as a result of isolated bacterial sinusitis. Observations: A 63-year-old woman presented with an orbital apex syndrome from isolated bacterial sinusitis with rapidly declining visual acuity to no light perception. We compared our case with 6 similar cases of severe vision loss from isolated bacterial sinusitis. In contrast to previously published cases, our patient presented with good vision yet deteriorated to no light perception despite appropriate treatment. Conclusions and importance: Orbital apex syndrome can present as a constellation of cranial neuropathies including optic neuropathy from conditions affecting the orbital apex. Although vision loss remained permanent, prompt initiation of broad-spectrum antibiotics and antifungals and surgical intervention prevented further extension of infection into intracranial structures. Keywords: Orbital apex syndrome, Optic neuropathy
- Published
- 2018
48. Canthal V-plasty for Floppy Eyelid Surgery
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Stephen C. Dryden, Margaret E. Phillips, Brian T. Fowler, and James C. Fleming
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medicine.medical_specialty ,Blepharoplasty ,medicine.medical_treatment ,lcsh:Surgery ,030230 surgery ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Canthus ,Ideas and Innovations ,Reduction (orthopedic surgery) ,Fixation (histology) ,business.industry ,Pyogenic granuloma ,lcsh:RD1-811 ,medicine.disease ,eye diseases ,Surgery ,Floppy eyelid syndrome ,body regions ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,ComputingMethodologies_DOCUMENTANDTEXTPROCESSING ,Eyelid ,sense organs ,business ,Complication - Abstract
Supplemental Digital Content is available in the text., Summary: The purpose of this article is to present a modified approach to the reconstruction of the upper and lower eyelids in floppy eyelid syndrome. A retrospective chart review was performed on all floppy eyelid patients who underwent simultaneous tightening of the upper and lower eyelid with a lateral tarsal strip, using a V-shaped incision in the lateral canthus, at University of Tennessee Hamilton Eye Institute from 2011 to 2012. Preoperative symptoms, surgical outcomes, complication rates, and postoperative symptoms were recorded. Nine eyes of 7 patients who underwent surgical correction for symptomatic floppy eyelids were included. All patients noted improvement in symptoms postoperatively, after reduction in the laxity of the upper and lower eyelid. Postoperative complications included buried lashes in the lateral canthus in 1 eye and a pyogenic granuloma in the lateral canthus of 1 eye. An excellent cosmetic outcome was noted in 78% (7/9) of eyes. No patients reported dissatisfaction nor required secondary surgical correction. The lateral canthal “V” incision provides an additional approach in the successful management of floppy eyelid syndrome involving the upper and lower eyelids. The design of the incision allows for excellent exposure of the lateral canthus for shortening of the eyelids with tarsal strip fixation, and it preserves the lateral canthal skin and canthus architecture. Further, the “V” incision is easily continued into the eyelid crease for blepharoplasty and ptosis repair when necessary.
- Published
- 2019
49. Alternative pathways utilize or circumvent putrescine for biosynthesis of putrescine-containing rhizoferrin
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Margaret A. Phillips, Xiaoyi Deng, Anthony J. Michael, Diana R. Tomchick, Leann Buhrow, Sok Ho Kim, and Bin Li
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0301 basic medicine ,siderophore ,rhizoferrin ,Siderophores ,NIS, nonribosomal peptide synthetase-independent siderophore ,Ralstonia ,L-ODC, L-ornithine decarboxylase ,D-ODC, D-ornithine decarboxylase ,medicine.disease_cause ,Ferric Compounds ,Biochemistry ,Ornithine decarboxylase ,chemistry.chemical_compound ,DAPDC, meso-diaminopimelate decarboxylase ,polyamine ,Carboxynorspermidine decarboxylase ,N-citrylornithine ,ADC, L-arginine decarboxylase ,Citrates ,Francisella ,Peptide Synthases ,chemistry.chemical_classification ,Ralstonia pickettii ,Chemistry ,Enzyme structure ,AR-fold, alanine racemase-fold ,CASDC, carboxyspermidine decarboxylase ,Research Article ,Iron ,Legionella ,L/ODC, bifunctional lysine/ornithine decarboxylase ,Legionella pneumophila ,03 medical and health sciences ,Bacterial Proteins ,Biosynthesis ,Nonribosomal peptide ,Putrescine ,medicine ,Francisella novicida ,Molecular Biology ,CANSDC, carboxynorspermidine decarboxylase ,030102 biochemistry & molecular biology ,MFS, major facilitator superfamily ,Cell Biology ,030104 developmental biology ,ornithine ,decarboxylase ,Polyamine - Abstract
The siderophore rhizoferrin (N1,N4-dicitrylputrescine) is produced in fungi and bacteria to scavenge iron. Putrescine-producing bacterium Ralstonia pickettii synthesizes rhizoferrin and encodes a single nonribosomal peptide synthetase-independent siderophore (NIS) synthetase. From biosynthetic logic, we hypothesized that this single enzyme is sufficient for rhizoferrin biosynthesis. We confirmed this by expression of R. pickettii NIS synthetase in Escherichia coli, resulting in rhizoferrin production. This was further confirmed in vitro using the recombinant NIS synthetase, synthesizing rhizoferrin from putrescine and citrate. Heterologous expression of homologous lbtA from Legionella pneumophila, required for rhizoferrin biosynthesis in that species, produced siderophore activity in E. coli. Rhizoferrin is also synthesized by Francisella tularensis and Francisella novicida, but unlike R. pickettii or L. pneumophila, Francisella species lack putrescine biosynthetic pathways because of genomic decay. Francisella encodes a NIS synthetase FslA/FigA and an ornithine decarboxylase homolog FslC/FigC, required for rhizoferrin biosynthesis. Ornithine decarboxylase produces putrescine from ornithine, but we show here in vitro that FigA synthesizes N-citrylornithine, and FigC is an N-citrylornithine decarboxylase that together synthesize rhizoferrin without using putrescine. We co-expressed F. novicida figA and figC in E. coli and produced rhizoferrin. A 2.1 Å X-ray crystal structure of the FigC N-citrylornithine decarboxylase reveals how the larger substrate is accommodated and how active site residues have changed to recognize N-citrylornithine. FigC belongs to a new subfamily of alanine racemase-fold PLP-dependent decarboxylases that are not involved in polyamine biosynthesis. These data reveal a natural product biosynthetic workaround that evolved to bypass a missing precursor and re-establish it in the final structure.
- Published
- 2021
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50. A Triazolopyrimidine-Based Dihydroorotate Dehydrogenase Inhibitor with Improved Drug-like Properties for Treatment and Prevention of Malaria
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Krishne Manjalanagara, Margaret A. Phillips, Xiaoyi Deng, Michael Campbell, Karen L. White, Ric N. Price, Kennan C. Marsh, Jeremy N. Burrows, John H. White, Werner Kaminsky, Anne Marie Zeeman, Sreekanth Kokkonda, Susan A. Charman, Diana R. Tomchick, Santiago Ferrer Bazaga, Clemens H. M. Kocken, Grennady Wirjanata, Francis C. K. Chiu, María Santos Martínez, David M. Shackleford, María Belén Jiménez-Díaz, Kigbafori D. Silué, Thomas Rueckle, Jutta Marfurt, Kakali Rani Rudra, Benjamin Blasco, Iñigo Angulo-Barturen, Rintis Noviyanti, Pradipsinh K. Rathod, Maria J. Lafuente-Monasterio, Michael J. Palmer, Dave Matthews, Emilie Rossignol, David Waterson, Didier Leroy, and Farah El Mazouni
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0301 basic medicine ,Drug ,Plasmodium ,Oxidoreductases Acting on CH-CH Group Donors ,dihydroorotate dehydrogenase ,media_common.quotation_subject ,Plasmodium falciparum ,030106 microbiology ,Dihydroorotate Dehydrogenase ,malaria ,Protozoan Proteins ,pyrimidine biosynthesis ,Biology ,Pharmacology ,Article ,Antimalarials ,Mice ,Structure-Activity Relationship ,03 medical and health sciences ,Dogs ,parasitic diseases ,medicine ,Animals ,Humans ,Structure–activity relationship ,Dosing ,Enzyme Inhibitors ,Malaria, Falciparum ,Dihydroorotate Dehydrogenase Inhibitor ,media_common ,chemistry.chemical_classification ,medicine.disease ,biology.organism_classification ,Rats ,Pyrimidines ,030104 developmental biology ,Infectious Diseases ,Enzyme ,chemistry ,Dihydroorotate dehydrogenase ,Malaria - Abstract
The emergence of drug-resistant malaria parasites continues to hamper efforts to control this lethal disease. Dihydroorotate dehydrogenase has recently been validated as a new target for the treatment of malaria, and a selective inhibitor (DSM265) of the Plasmodium enzyme is currently in clinical development. With the goal of identifying a backup compound to DSM265, we explored replacement of the SF5-aniline moiety of DSM265 with a series of CF3-pyridinyls while maintaining the core triazolopyrimidine scaffold. This effort led to the identification of DSM421, which has improved solubility, lower intrinsic clearance, and increased plasma exposure after oral dosing compared to DSM265, while maintaining a long predicted human half-life. Its improved physical and chemical properties will allow it to be formulated more readily than DSM265. DSM421 showed excellent efficacy in the SCID mouse model of P. falciparum malaria that supports the prediction of a low human dose (
- Published
- 2016
- Full Text
- View/download PDF
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