1,916 results on '"Marcotte P"'
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2. Robotic Wire Arc Additive Manufacturing with Variable Height Layers
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Marcotte, John, Mishra, Sandipan, and Wen, John T.
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Computer Science - Robotics - Abstract
Robotic wire arc additive manufacturing has been widely adopted due to its high deposition rates and large print volume relative to other metal additive manufacturing processes. For complex geometries, printing with variable height within layers offer the advantage of producing overhangs without the need for support material or geometric decomposition. This approach has been demonstrated for steel using precomputed robot speed profiles to achieve consistent geometric quality. In contrast, aluminum exhibits a bead geometry that is tightly coupled to the temperature of the previous layer, resulting in significant changes to the height of the deposited material at different points in the part. This paper presents a closed-loop approach to correcting for variations in the height of the deposited material between layers. We use an IR camera mounted on a separate robot to track the welding flame and estimate the height of deposited material. The robot velocity profile is then updated to account for the error in the previous layer and the nominal planned height profile while factoring in process and system constraints. Implementation of this framework showed significant improvement over the open-loop case and demonstrated robustness to inaccurate model parameters., Comment: 8 pages, 17 figures
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- 2024
3. On nonlinear transitions, minimal seeds and exact solutions for the geodynamo
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Skene, Calum S., Marcotte, Florence, and Tobias, Steven M.
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Physics - Fluid Dynamics ,Astrophysics - Earth and Planetary Astrophysics ,Physics - Geophysics - Abstract
Nearly fifty years ago, Roberts (1978) postulated that Earth's magnetic field, which is generated by turbulent motions of liquid metal in its outer core, likely results from a subcritical dynamo instability characterised by a dominant balance between Coriolis, pressure and Lorentz forces. Here we numerically explore the generation of subcritical geomagnetic fields using techniques from optimal control and dynamical systems theory to uncover the nonlinear dynamical landscape underlying dynamo action. Through nonlinear optimisation, via direct-adjoint looping, we identify the minimal seed - the smallest magnetic field that attracts to a nonlinear dynamo solution. Additionally, using the Newton-hookstep algorithm, we converge stable and unstable travelling wave solutions to the governing equations. By combining these two techniques, complex nonlinear pathways between attracting states are revealed, providing insight into a potential subcritical origin of the geodynamo. This paper showcases these methods on the widely studied benchmark of Christensen et al. (2001), laying the foundations for future studies in more extreme and realistic parameter regimes. We show that the minimal seed reaches a nonlinear dynamo solution by first attracting to an unstable travelling wave solution, which acts as an edge state separating a hydrodynamic solution from a magnetohydrodynamic one. Furthermore, by carefully examining the choice of cost functional, we establish a robust optimisation procedure that can systematically locate dynamo solutions on short time horizons with no prior knowledge of its structure., Comment: 21 pages, 8 figures
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- 2024
4. Context is Key: A Benchmark for Forecasting with Essential Textual Information
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Williams, Andrew Robert, Ashok, Arjun, Marcotte, Étienne, Zantedeschi, Valentina, Subramanian, Jithendaraa, Riachi, Roland, Requeima, James, Lacoste, Alexandre, Rish, Irina, Chapados, Nicolas, and Drouin, Alexandre
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Statistics - Machine Learning - Abstract
Forecasting is a critical task in decision-making across numerous domains. While historical numerical data provide a start, they fail to convey the complete context for reliable and accurate predictions. Human forecasters frequently rely on additional information, such as background knowledge and constraints, which can efficiently be communicated through natural language. However, in spite of recent progress with LLM-based forecasters, their ability to effectively integrate this textual information remains an open question. To address this, we introduce "Context is Key" (CiK), a time-series forecasting benchmark that pairs numerical data with diverse types of carefully crafted textual context, requiring models to integrate both modalities; crucially, every task in CiK requires understanding textual context to be solved successfully. We evaluate a range of approaches, including statistical models, time series foundation models, and LLM-based forecasters, and propose a simple yet effective LLM prompting method that outperforms all other tested methods on our benchmark. Our experiments highlight the importance of incorporating contextual information, demonstrate surprising performance when using LLM-based forecasting models, and also reveal some of their critical shortcomings. This benchmark aims to advance multimodal forecasting by promoting models that are both accurate and accessible to decision-makers with varied technical expertise. The benchmark can be visualized at https://servicenow.github.io/context-is-key-forecasting/v0/., Comment: Preprint; under review. First two authors contributed equally
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- 2024
5. Effectiveness of French Phonological Components Analysis in Individuals with Chronic Aphasia
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Michèle Masson-Trottier, Karine Marcotte, Elizabeth Rochon, Carol Leonard, and Ana Inés Ansaldo
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Background: Over 50% of individuals with aphasia face ongoing word-finding issues. Studies have found phonologically oriented therapy helpful for English speakers, but this has not yet been studied in French. It is essential to assess the effectiveness of such a therapy in French, considering the distinct linguistic typologies between both languages, which may impact the outcomes of phonologically oriented interventions. Aim: This paper evaluates the effectiveness of French Phonological Component Analysis (Fr-PCA) on communication skills of individuals with chronic aphasia and the impact of individual factors on treatment success. Methods & Procedures: Eighteen individuals with chronic aphasia received 15 h of Fr-PCA therapy over 5 weeks. Naming accuracy for treated and untreated words was measured before and after therapy, as well as at 3- and 6-month follow-ups. Secondary outcome measures included standardized tests measuring within-level generalization (object and action naming) and across-level generalization (repetition, verbal fluency, oral comprehension, communication effectiveness reported by a frequent communication partner). Outcomes & Results: Fr-PCA led to improved accuracy for treated (17 participants out of 18) and untreated words (9 participants out of 18), with gains maintained at 6-month follow-up (7 participants out of 10 for treated and 6 participants out of 10 for untreated), and generalization to communication effectiveness reported by a frequent communication partner (11 participants out of 16). Age, apraxia of speech severity and initial anomia severity impacted therapy gains. Conclusions & Implications: Though more research is needed, results suggest Fr-PCA benefits French individuals living with aphasia. Identifying individual factors influencing therapy gains could enable clinicians to improve therapy tailoring.
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- 2024
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6. Ethical considerations of using learning analytics in medical education: a critical review
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Marcotte, Kayla, Yang, Phillip, Millis, M. Andrew, Vercler, Christian J., Sebok-Syer, Stefanie S., Krumm, Andrew E., and George, Brian C.
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- 2025
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7. On the Confluence of Directed Graph Reductions Preserving Feedback Vertex Set Minimality
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Abdenbi, Moussa, Massé, Alexandre Blondin, Goupil, Alain, and Marcotte, Odile
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Computer Science - Discrete Mathematics ,G.2.2 - Abstract
In graph theory, the minimum directed feedback vertex set (FVS) problem consists in identifying the smallest subsets of vertices in a directed graph whose deletion renders the directed graph acyclic. Although being known as NP-hard since 1972, this problem can be solved in a reasonable time on small instances, or on instances having special combinatorial structure. In this paper we investigate graph reductions preserving all or some minimum FVS and focus on their properties, especially the Church-Rosser property, also called confluence. The Church-Rosser property implies the irrelevance of reduction order, leading to a unique directed graph. The study seeks the largest subset of reductions with the Church-Rosser property and explores the adaptability of reductions to meet this criterion. Addressing these questions is crucial, as it may impact algorithmic implications, allowing for parallelization and speeding up sequential algorithms., Comment: In Proceedings GASCom 2024, arXiv:2406.14588
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- 2024
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8. RepLiQA: A Question-Answering Dataset for Benchmarking LLMs on Unseen Reference Content
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Monteiro, Joao, Noel, Pierre-Andre, Marcotte, Etienne, Rajeswar, Sai, Zantedeschi, Valentina, Vazquez, David, Chapados, Nicolas, Pal, Christopher, and Taslakian, Perouz
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence - Abstract
Large Language Models (LLMs) are trained on vast amounts of data, most of which is automatically scraped from the internet. This data includes encyclopedic documents that harbor a vast amount of general knowledge (e.g., Wikipedia) but also potentially overlap with benchmark datasets used for evaluating LLMs. Consequently, evaluating models on test splits that might have leaked into the training set is prone to misleading conclusions. To foster sound evaluation of language models, we introduce a new test dataset named RepLiQA, suited for question-answering and topic retrieval tasks. RepLiQA is a collection of five splits of test sets, four of which have not been released to the internet or exposed to LLM APIs prior to this publication. Each sample in RepLiQA comprises (1) a reference document crafted by a human annotator and depicting an imaginary scenario (e.g., a news article) absent from the internet; (2) a question about the document's topic; (3) a ground-truth answer derived directly from the information in the document; and (4) the paragraph extracted from the reference document containing the answer. As such, accurate answers can only be generated if a model can find relevant content within the provided document. We run a large-scale benchmark comprising several state-of-the-art LLMs to uncover differences in performance across models of various types and sizes in a context-conditional language modeling setting. Released splits of RepLiQA can be found here: https://huggingface.co/datasets/ServiceNow/repliqa.
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- 2024
9. Keep the Momentum: Conservation Laws beyond Euclidean Gradient Flows
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Marcotte, Sibylle, Gribonval, Rémi, and Peyré, Gabriel
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Computer Science - Machine Learning ,Mathematics - Optimization and Control - Abstract
Conservation laws are well-established in the context of Euclidean gradient flow dynamics, notably for linear or ReLU neural network training. Yet, their existence and principles for non-Euclidean geometries and momentum-based dynamics remain largely unknown. In this paper, we characterize "all" conservation laws in this general setting. In stark contrast to the case of gradient flows, we prove that the conservation laws for momentum-based dynamics exhibit temporal dependence. Additionally, we often observe a "conservation loss" when transitioning from gradient flow to momentum dynamics. Specifically, for linear networks, our framework allows us to identify all momentum conservation laws, which are less numerous than in the gradient flow case except in sufficiently over-parameterized regimes. With ReLU networks, no conservation law remains. This phenomenon also manifests in non-Euclidean metrics, used e.g. for Nonnegative Matrix Factorization (NMF): all conservation laws can be determined in the gradient flow context, yet none persists in the momentum case., Comment: Accepted to ICML 2024
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- 2024
10. Releasing trapped Taylor bubbles via centrifugation and inclination
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Marcotte, Alice, Ledda, Pier Giuseppe, Buriasco, Valentin, Dené, Paul, Gallaire, François, and Keiser, Ludovic
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Physics - Fluid Dynamics - Abstract
In confined systems, the entrapment of a gas volume with an equivalent spherical diameter greater than the dimension of the channel can form extended bubbles that obstruct fluid circuits and compromise performance. Notably, in sealed vertical tubes, buoyant long bubbles -- called Taylor bubbles -- cannot rise if the inner tube radius is below a critical value near the capillary length. This critical threshold for steady ascent is determined by geometric constraints related to matching the upper cap shape with the lubricating film in the elongated part of the bubble. Developing strategies to overcome this threshold and release stuck bubbles is essential for applications involving narrow liquid channels. Effective strategies involve modifying matching conditions with an external force field to facilitate bubble ascent. However, it's unclear how changes in acceleration conditions affect the motion onset of buoyancy-driven long bubbles. This study investigates the mobility of elongated bubbles in sealed tubes with an inner radius near the critical value inhibiting bubble motion in a vertical setting. Two strategies are explored to tune bubble motion, leveraging variations in axial and transversal accelerations: tube rotation around its axis and tube inclination relative to gravity. By revising the geometrical constraints of the simple vertical setting, the study predicts new thresholds based on rotational speed and tilt angle, respectively, providing forecasts for the bubble rising velocity under modified apparent gravity. Experimental measurements of motion threshold and rising velocity compare well with theoretical developments, thus suggesting practical approaches to control and tune bubble motion in confined environments.
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- 2024
11. XC-Cache: Cross-Attending to Cached Context for Efficient LLM Inference
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Monteiro, João, Marcotte, Étienne, Noël, Pierre-André, Zantedeschi, Valentina, Vázquez, David, Chapados, Nicolas, Pal, Christopher, and Taslakian, Perouz
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Computer Science - Computation and Language ,Computer Science - Artificial Intelligence - Abstract
In-context learning (ICL) approaches typically leverage prompting to condition decoder-only language model generation on reference information. Just-in-time processing of a context is inefficient due to the quadratic cost of self-attention operations, and caching is desirable. However, caching transformer states can easily require almost as much space as the model parameters. When the right context isn't known in advance, caching ICL can be challenging. This work addresses these limitations by introducing models that, inspired by the encoder-decoder architecture, use cross-attention to condition generation on reference text without the prompt. More precisely, we leverage pre-trained decoder-only models and only train a small number of added layers. We use Question-Answering (QA) as a testbed to evaluate the ability of our models to perform conditional generation and observe that they outperform ICL, are comparable to fine-tuned prompted LLMs, and drastically reduce the space footprint relative to standard KV caching by two orders of magnitude.
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- 2024
12. Predicting effective quenching of stable pulses in slow-fast excitable media
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Marcotte, Christopher D.
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Nonlinear Sciences - Pattern Formation and Solitons ,Mathematics - Numerical Analysis ,Quantitative Biology - Quantitative Methods - Abstract
We develop a linear theory for the prediction of excitation wave quenching -- the construction of minimal perturbations which return stable excitations to quiescence -- for localized pulse solutions in models of excitable media. The theory accounts for an additional equivariance compared to the homogeneous ignition problem, and thus requires a reconsideration of heuristics for choosing optimal reference states from their group representation. We compare predictions made with the linear theory to direct numerical simulations across a family of perturbations and assess their accuracy for several models with distinct stable excitation structures. We find that the theory achieves qualitative predictive power with only the effort of continuing a scalar root, and achieves quantitative predictive power in many circumstances. Finally, we compare the computational cost of our prediction technique to other numerical methods for the determination of transitions in extended excitable systems., Comment: 17 pages, 11 figures
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- 2024
13. Undergraduate Research Experience and Post-Graduate Achievement among Students from Underrepresented Groups in STEM
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David C. Barker, Valory Messier, Dave E. Marcotte, Lisa Hammersley, and Semarhy Quinones-Soto
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Racial and ethnic disparities in STEM achievement are associated with weaker economic growth, greater social inequalities, and narrower parameters of scientific inquiry. Extant research suggests that undergraduate research experiences (URE) can reduce those disparities by enhancing perceptions of belonging and scientific self-efficacy among students from underrepresented groups. However, to date, very few studies have examined the relationship between URE and "post-baccalaureate" educational achievement gains among such students and those that have tend to be limited in terms of causal leverage and generalizability. In this study, we aim to make progress by analyzing data from the California State University system's longstanding Louis Stokes Alliance for Minority Participation (CSU-LSAMP) program. Applying a quasi-experimental research design and drawing upon a large and representative sample of students whom we tracked over time, we observe that URE is strongly associated with post-baccalaureate enrollment and graduation in STEM disciplines among students from underrepresented backgrounds.
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- 2024
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14. TACTiS-2: Better, Faster, Simpler Attentional Copulas for Multivariate Time Series
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Ashok, Arjun, Marcotte, Étienne, Zantedeschi, Valentina, Chapados, Nicolas, and Drouin, Alexandre
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Computer Science - Machine Learning ,Computer Science - Artificial Intelligence ,Statistics - Machine Learning - Abstract
We introduce a new model for multivariate probabilistic time series prediction, designed to flexibly address a range of tasks including forecasting, interpolation, and their combinations. Building on copula theory, we propose a simplified objective for the recently-introduced transformer-based attentional copulas (TACTiS), wherein the number of distributional parameters now scales linearly with the number of variables instead of factorially. The new objective requires the introduction of a training curriculum, which goes hand-in-hand with necessary changes to the original architecture. We show that the resulting model has significantly better training dynamics and achieves state-of-the-art performance across diverse real-world forecasting tasks, while maintaining the flexibility of prior work, such as seamless handling of unaligned and unevenly-sampled time series. Code is made available at https://github.com/ServiceNow/TACTiS., Comment: 28 pages, 15 figures, The Twelfth International Conference on Learning Representations (ICLR 2024)
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- 2023
15. Nonchromosomal birth defects and risk of childhood acute leukemia: An assessment in 15 000 leukemia cases and 46 000 controls from the Childhood Cancer and Leukemia International Consortium
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Lupo, Philip J, Chambers, Tiffany M, Mueller, Beth A, Clavel, Jacqueline, Dockerty, John D, Doody, David R, Erdmann, Friederike, Ezzat, Sameera, Filippini, Tommaso, Hansen, Johnni, Heck, Julia E, Infante‐Rivard, Claire, Kang, Alice Y, Magnani, Corrado, Malagoli, Carlotta, Marcotte, Erin L, Metayer, Catherine, Bailey, Helen D, Mora, Ana M, Ntzani, Evangelia, Petridou, Eleni Th, Pombo‐de‐Oliveira, Maria S, Rashed, Wafaa M, Roman, Eve, Schüz, Joachim, Wesseling, Catharina, Spector, Logan G, and Scheurer, Michael E
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Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Hematology ,Rare Diseases ,Pediatric Cancer ,Cancer ,Pediatric ,Clinical Research ,Childhood Leukemia ,2.1 Biological and endogenous factors ,Child ,Humans ,Infant ,Risk Factors ,Leukemia ,Myeloid ,Acute ,Birth Weight ,Logistic Models ,Case-Control Studies ,Surveys and Questionnaires ,acute lymphoblastic leukemia ,acute myeloid leukemia ,birth defects ,childhood leukemia ,epidemiology ,Oncology & Carcinogenesis ,Oncology and carcinogenesis - Abstract
Although recent studies have demonstrated associations between nonchromosomal birth defects and several pediatric cancers, less is known about their role on childhood leukemia susceptibility. Using data from the Childhood Cancer and Leukemia International Consortium, we evaluated associations between nonchromosomal birth defects and childhood leukemia. Pooling consortium data from 18 questionnaire-based and three registry-based case-control studies across 13 countries, we used multivariable logistic regression models to estimate odds ratios (ORs) and 95% confidence intervals (CIs) for the association between a spectrum of birth defects and leukemia. Our analyses included acute lymphoblastic leukemia (ALL, n = 13 115) and acute myeloid leukemia (AML, n = 2120) cases, along with 46 172 controls. We used the false discovery rate to account for multiple comparisons. In the questionnaire-based studies, the prevalence of birth defects was 5% among cases vs 4% in controls, whereas, in the registry-based studies, the prevalence was 11% among cases vs 7% in controls. In pooled adjusted analyses, there were several notable associations, including (1) digestive system defects and ALL (OR = 2.70, 95% CI: 1.46-4.98); (2) congenital anomalies of the heart and circulatory system and AML (OR = 2.86, 95% CI: 1.81-4.52) and (3) nervous system defects and AML (OR = 4.23, 95% CI: 1.50-11.89). Effect sizes were generally larger in registry-based studies. Overall, our results could point to novel genetic and environmental factors associated with birth defects that could also increase leukemia susceptibility. Additionally, differences between questionnaire- and registry-based studies point to the importance of complementary sources of birth defect phenotype data when exploring these associations.
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- 2024
16. Alternative proteoforms and proteoform-dependent assemblies in humans and plants
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McWhite, Claire D, Sae-Lee, Wisath, Yuan, Yaning, Mallam, Anna L, Gort-Freitas, Nicolas A, Ramundo, Silvia, Onishi, Masayuki, and Marcotte, Edward M
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- 2024
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17. Non-negative Matrix Factorization using Partial Prior Knowledge for Radiation Dosimetry
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Lessard, Boby, Marcotte, Frédéric, Lalonde, Arthur, Therriault-Proulx, François, Lambert-Girard, Simon, Beaulieu, Luc, and Archambault, Louis
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Physics - Medical Physics - Abstract
Hyperspectral unmixing aims at decomposing a given signal into its spectral signatures and its associated fractional abundances. To improve the accuracy of this decomposition, algorithms have included different assumptions depending on the application. The goal of this study is to develop a new unmixing algorithm that can be applied for the calibration of multi-point scintillation dosimeters used in the field of radiation therapy. This new algorithm is based on a non-negative matrix factorization. It incorporates a partial prior knowledge on both the abundances and the endmembers of a given signal. It is shown herein that, following a precise calibration routine, it is possible to use partial prior information about the fractional abundances, as well as on the endmembers, in order to perform a simplified yet precise calibration of these dosimeters. Validation and characterization of this algorithm is made using both simulations and experiments. The experimental validation shows an improvement in accuracy compared to previous algorithms with a mean spectral angle distance (SAD) on the estimated endmembers of 0.0766, leading to an average error of $(0.25 \pm 0.73)$ % on dose measurements., Comment: 12 pages, 6 figures
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- 2023
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18. Mining Patents with Large Language Models Elucidates the Chemical Function Landscape
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Kosonocky, Clayton W., Wilke, Claus O., Marcotte, Edward M., and Ellington, Andrew D.
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Quantitative Biology - Quantitative Methods ,Computer Science - Machine Learning - Abstract
The fundamental goal of small molecule discovery is to generate chemicals with target functionality. While this often proceeds through structure-based methods, we set out to investigate the practicality of orthogonal methods that leverage the extensive corpus of chemical literature. We hypothesize that a sufficiently large text-derived chemical function dataset would mirror the actual landscape of chemical functionality. Such a landscape would implicitly capture complex physical and biological interactions given that chemical function arises from both a molecule's structure and its interacting partners. To evaluate this hypothesis, we built a Chemical Function (CheF) dataset of patent-derived functional labels. This dataset, comprising 631K molecule-function pairs, was created using an LLM- and embedding-based method to obtain functional labels for approximately 100K molecules from their corresponding 188K unique patents. We carry out a series of analyses demonstrating that the CheF dataset contains a semantically coherent textual representation of the functional landscape congruent with chemical structural relationships, thus approximating the actual chemical function landscape. We then demonstrate that this text-based functional landscape can be leveraged to identify drugs with target functionality using a model able to predict functional profiles from structure alone. We believe that functional label-guided molecular discovery may serve as an orthogonal approach to traditional structure-based methods in the pursuit of designing novel functional molecules., Comment: Under review
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- 2023
19. Vision-based Analysis of Driver Activity and Driving Performance Under the Influence of Alcohol
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Greer, Ross, Gopalkrishnan, Akshay, Mandadi, Sumega, Gunaratne, Pujitha, Trivedi, Mohan M., and Marcotte, Thomas D.
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence - Abstract
About 30% of all traffic crash fatalities in the United States involve drunk drivers, making the prevention of drunk driving paramount to vehicle safety in the US and other locations which have a high prevalence of driving while under the influence of alcohol. Driving impairment can be monitored through active use of sensors (when drivers are asked to engage in providing breath samples to a vehicle instrument or when pulled over by a police officer), but a more passive and robust mechanism of sensing may allow for wider adoption and benefit of intelligent systems that reduce drunk driving accidents. This could assist in identifying impaired drivers before they drive, or early in the driving process (before a crash or detection by law enforcement). In this research, we introduce a study which adopts a multi-modal ensemble of visual, thermal, audio, and chemical sensors to (1) examine the impact of acute alcohol administration on driving performance in a driving simulator, and (2) identify data-driven methods for detecting driving under the influence of alcohol. We describe computer vision and machine learning models for analyzing the driver's face in thermal imagery, and introduce a pipeline for training models on data collected from drivers with a range of breath-alcohol content levels, including discussion of relevant machine learning phenomena which can help in future experiment design for related studies., Comment: Withdrawn at the request of industry research collaborators, per contract agreement
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- 2023
20. A Cryogenic Memristive Neural Decoder for Fault-tolerant Quantum Error Correction
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Yon, Victor, Marcotte, Frédéric, Mouny, Pierre-Antoine, Dagnew, Gebremedhin A., Kulchytskyy, Bohdan, Rochette, Sophie, Beilliard, Yann, Drouin, Dominique, and Ronagh, Pooya
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Quantum Physics ,Computer Science - Emerging Technologies ,Computer Science - Machine Learning - Abstract
Neural decoders for quantum error correction (QEC) rely on neural networks to classify syndromes extracted from error correction codes and find appropriate recovery operators to protect logical information against errors. Its ability to adapt to hardware noise and long-term drifts make neural decoders a promising candidate for inclusion in a fault-tolerant quantum architecture. However, given their limited scalability, it is prudent that small-scale (local) neural decoders are treated as first stages of multi-stage decoding schemes for fault-tolerant quantum computers with millions of qubits. In this case, minimizing the decoding time to match the stabilization measurements frequency and a tight co-integration with the QPUs is highly desired. Cryogenic realizations of neural decoders can not only improve the performance of higher stage decoders, but they can minimize communication delays, and alleviate wiring bottlenecks. In this work, we design and analyze a neural decoder based on an in-memory computation (IMC) architecture, where crossbar arrays of resistive memory devices are employed to both store the synaptic weights of the neural decoder and perform analog matrix-vector multiplications. In simulations supported by experimental measurements, we investigate the impact of TiOx-based memristive devices' non-idealities on decoding fidelity. We develop hardware-aware re-training methods to mitigate the fidelity loss, restoring the ideal decoder's pseudo-threshold for the distance-3 surface code. This work provides a pathway to scalable, fast, and low-power cryogenic IMC hardware for integrated fault-tolerant QEC.
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- 2023
21. Relationship of Compassion for Self and Others to Sense of Well-Being of College Students
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Thupten Tendhar, Melissa A. Marcotte, Manob Jyoti Saikia, and Paul Bueno de Mesquita
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Objective: The mental health issues among college students have increased significantly in recent years. The primary purpose of this study was to explore and describe the relationship between self-compassion, compassion for others, and a sense of well-being among undergraduate college students. Participants: This study surveyed N = 651 college students aged 18-24 years at an urban university in the Northeast. Methods: Students completed an online survey through Survey Monkey that was comprised of questions about their self-compassion, compassion for others, and overall sense of well-being. Results: The results indicate that self-compassion, compassion for others, and sense of well-being are positively related. Exploratory tests for sex differences showed that females reported having significantly higher compassion for others while males reported having substantially higher self-compassion. Conclusion: The authors discuss the implications of the results and suggest a need for more compassion education programs at institutions of higher education. Suggestions are made for future experimental research that measures the impact of self-compassion and compassion for others, especially after the COVID-19 pandemic that impacted many college students' education, economy, relationships, and job prospects.
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- 2024
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22. The Cost of Public Higher Education and College Enrollment
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Taylor Delaney and Dave E. Marcotte
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How have changes in the price of enrolling full time at public 2- and 4-year colleges affected student decisions about whether and where to enroll in college? Using local differences in the growth of tuition at community colleges and public 4-year colleges, we study the impact of public higher education tuition prices on the post-secondary enrollment decisions of high school graduates over three decades. We model prospective students' decisions about whether to attend community college, a public four-year university in their state of residence, other colleges, or no college at all, as relative prices change. We identify enrollment impacts by instrumenting tuition prices using policy variation imposed by state appropriations and tuition caps. We estimate that in counties where local community college tuition doubled (about an average for the study period), the likelihood of post-secondary enrollment fell by about 0.05, on a mean of about 0.80. In addition to reducing college enrollment overall, rising tuition at community colleges diverted other students to four-year colleges. Rising relative prices of four-year public colleges similarly diverted some students toward community colleges but did not limit college attendance in the aggregate. We also find evidence of endogeneity in tuition-setting at the institution level.
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- 2024
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23. Investigating Empirical Implications of Embedding Project-Based Learning Theory into Standards-Structured, Scripted Curriculum Using NAEP 4th Grade Reading, Mathematics, and Science Data
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Erin E. Marcotte
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Project-Based Learning (PBL) is a teaching method in which students learn by actively engaging in real-world, personally meaningful projects that allow conceptual transformation to occur within the educational process while fostering intellectual curiosity in a supportive learning environment. PBL supports students developing deep content knowledge, critical thinking, collaboration, and communication skills. (PBLworks, 2021). What effect, if any, does PBL instruction have on academic achievement? Insight into PBL impacts on student achievement may inform teachers, administrators, and other stakeholders about the critical components of PBL and the relationship between those components and student academic achievement (Goo, 2020). This study aimed to align PBL instructional methods to 4th grade National Assessment of Educational Progress (NAEP) data to determine the effectiveness of PBL on student academic achievement in reading, mathematics, and science content areas. This quantitative study includes an analysis of 4th grade content area data from the NAEP database in relation to the study's guiding philosophies and theories supporting PBL instructional practices. Strategies used to analyze the data focused on sub-questions within the NAEP data set to answer the larger research question regarding PBL and its impact on student academic achievement. The evidence is displayed through crosstabulation charts, in the appendix, allowing the reader to analyze results and shows several key findings that relate PBL instruction to student academic achievement in reading, mathematics, and science across 4th grade students. The results of this study may help leaders improve the implementation of scripted versus semi-scripted curriculum decisions in schools and the amount of autonomy teachers can have with assigned curriculum choices. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
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- 2024
24. Charter Schools and the Segregation of Students by Income
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Kari Dalane and Dave E. Marcotte
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The share of students attending charter schools has been rising. There is evidence that charter school growth has increased socioeconomic segregation of students between schools. In this paper, we assess whether charter school growth affects how students are organized within nearby traditional public schools (TPS). We use administrative data from North Carolina to estimate the impact of charter school openings on segregation by income within nearby TPS. Our models exploit variation in the presence and location of charter schools over time between 2007 and 2014 for students in Grades 3 to 8. We find limited evidence that the segregation of students by income at the classroom level increases when charters open nearby. We find some evidence of increasing segregation in third grade and fourth grade math and third grade ELA classrooms at TPS within 2 miles of new charters in large urban districts schools. Our results vary somewhat depending on how we control for underlying trends and measure segregation. We find no effect of charter school growth on income segregation in higher grades.
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- 2024
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25. Factors that facilitate or hinder the use of the facial rehabilitation webtool MEPP 2.0: a comparative study in the Quebecer health system
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Martineau, Sarah, Barbeau, Jacinthe, Paquin, Alyssia, and Marcotte, Karine
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- 2024
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26. Correction: Leveraging human-centered design and causal pathway diagramming toward enhanced specifcation and development of innovative implementation strategies: a case example of an outreach tool to address racial inequities in breast cancer screening
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Marcotte, Leah M., Langevin, Raina, Hempstead, Bridgette H., Ganguly, Anisha, Lyon, Aaron R., Weiner, Bryan J., Akinsoto, Nkem, Houston, Paula L., Fang, Victoria, and Hsieh, Gary
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- 2024
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27. Leveraging human-centered design and causal pathway diagramming toward enhanced specification and development of innovative implementation strategies: a case example of an outreach tool to address racial inequities in breast cancer screening
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Marcotte, Leah M., Langevin, Raina, Hempstead, Bridgette H., Ganguly, Anisha, Lyon, Aaron R., Weiner, Bryan J., Akinsoto, Nkem, Houston, Paula L., Fang, Victoria, and Hsieh, Gary
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- 2024
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28. Conversation for change: engaging older adults as partners in research on gerotechnology
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Bytautas, Jessica, Grigorovich, Alisa, Carson, Judith, Fowler, Janet, Goldman, Ian, Harris, Bessie, Kerr, Anne, Marcotte, Ashley-Ann, O’Doherty, Kieran, Jenkins, Amanda, Kirkland, Susan, and Kontos, Pia
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- 2024
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29. Molecular-level architecture of Chlamydomonas reinhardtii’s glycoprotein-rich cell wall
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Poulhazan, Alexandre, Arnold, Alexandre A., Mentink-Vigier, Frederic, Muszyński, Artur, Azadi, Parastoo, Halim, Adnan, Vakhrushev, Sergey Y., Joshi, Hiren Jitendra, Wang, Tuo, Warschawski, Dror E., and Marcotte, Isabelle
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- 2024
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30. Examining early career surgeon performance: the most common procedures and their associated complication rates
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Picart, Jamila, Marcotte, Kayla M., Yee, Chia Chye, Moreci, Rebecca, Gates, Rebecca S., Krumm, Andrew E., and George, Brian C.
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- 2024
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31. Strategies for evaluating predictive models: examples and implications based on a natural language processing model used to assess operative performance feedback
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Krumm, Andrew E., Ötleş, Erkin, Marcotte, Kayla M., Spencer, Brianna L., Izadi, Shawn, George, Brian C., and Zendejas, Benjamin
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- 2024
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32. A longitudinal study of cannabis use and risk for cognitive and functional decline among older adults with HIV
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Watson, Caitlin Wei-Ming, Sundermann, Erin, Helm, Jonathan, Paolillo, Emily W, Hong, Suzi, Ellis, Ronald J, Letendre, Scott, Marcotte, Thomas D, Heaton, Robert K, Morgan, Erin E, and Grant, Igor
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Public Health ,Health Sciences ,Acquired Cognitive Impairment ,Aging ,Neurodegenerative ,Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD) ,Clinical Research ,Substance Misuse ,Drug Abuse (NIDA only) ,Behavioral and Social Science ,Brain Disorders ,Dementia ,Neurosciences ,Cannabinoid Research ,2.1 Biological and endogenous factors ,Mental health ,Good Health and Well Being ,Humans ,Aged ,Cannabis ,Longitudinal Studies ,HIV Infections ,Hallucinogens ,Cognition ,Elderly ,Marijuana ,Memory ,Cognitive decline ,HIV ,AIDS ,HIV/AIDS ,Public Health and Health Services ,Social Work ,Public health - Abstract
Cannabis use is rapidly increasing among older adults in the United States, in part to treat symptoms of common health conditions (e.g., chronic pain, sleep problems). Longitudinal studies of cannabis use and cognitive decline in aging populations living with chronic disease are lacking. We examined different levels of cannabis use and cognitive and everyday function over time among 297 older adults with HIV (ages 50-84 at baseline). Participants were classified based on average cannabis use: frequent (> weekly) (n = 23), occasional (≤ weekly) (n = 83), and non-cannabis users (n=191) and were followed longitudinally for up to 10 years (average years of follow-up = 3.9). Multi-level models examined the effects of average and recent cannabis use on global cognition, global cognitive decline, and functional independence. Occasional cannabis users showed better global cognitive performance overall compared to non-cannabis users. Rates of cognitive decline and functional problems did not vary by average cannabis use. Recent cannabis use was linked to worse cognition at study visits when participants had THC+ urine toxicology-this short-term decrement in cognition was driven by worse memory and did not extend to reports of functional declines. Occasional (≤ weekly) cannabis use was associated with better global cognition over time in older adults with HIV, a group vulnerable to chronic inflammation and cognitive impairment. Recent THC exposure may have a temporary adverse impact on memory. To inform safe and efficacious medical cannabis use, the effects of specific cannabinoid doses on cognition and biological mechanisms must be investigated in older adults.
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- 2023
33. Abide by the Law and Follow the Flow: Conservation Laws for Gradient Flows
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Marcotte, Sibylle, Gribonval, Rémi, and Peyré, Gabriel
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Computer Science - Machine Learning ,Mathematics - Optimization and Control - Abstract
Understanding the geometric properties of gradient descent dynamics is a key ingredient in deciphering the recent success of very large machine learning models. A striking observation is that trained over-parameterized models retain some properties of the optimization initialization. This "implicit bias" is believed to be responsible for some favorable properties of the trained models and could explain their good generalization properties. The purpose of this article is threefold. First, we rigorously expose the definition and basic properties of "conservation laws", that define quantities conserved during gradient flows of a given model (e.g. of a ReLU network with a given architecture) with any training data and any loss. Then we explain how to find the maximal number of independent conservation laws by performing finite-dimensional algebraic manipulations on the Lie algebra generated by the Jacobian of the model. Finally, we provide algorithms to: a) compute a family of polynomial laws; b) compute the maximal number of (not necessarily polynomial) independent conservation laws. We provide showcase examples that we fully work out theoretically. Besides, applying the two algorithms confirms for a number of ReLU network architectures that all known laws are recovered by the algorithm, and that there are no other independent laws. Such computational tools pave the way to understanding desirable properties of optimization initialization in large machine learning models.
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- 2023
34. Tayler-Spruit dynamos in simulated radiative stellar layers
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Petitdemange, Ludovic, Marcotte, Florence, Gissinger, Christophe, and Daniel, Florentin
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Astrophysics - Solar and Stellar Astrophysics - Abstract
The Tayler-Spruit dynamo mechanism has been proposed two decades ago as a plausible mechanism to transport angular momentum in radiative stellar layers. Direct numerical simulations are still needed to understand its trigger conditions and the saturation mechanisms. The present study follows up on (Petitdemange et al. 2023), where we reported the first numerical simulations of a Tayler-Spruit dynamo cycle. Here we extend the explored parameter space to assess in particular the influence of stratification on the dynamo solutions. We also present numerical verification of theoretical assumptions made in (Spruit 2002), which are instrumental in deriving the classical prescription for angular momentum transport implemented in stellar evolution codes. A simplified radiative layer is modeled numerically by considering the dynamics of a stably-stratified, differentially rotating, magnetized fluid in a spherical shell. Our simulations display a diversity of magnetic field topologies and amplitudes depending on the flow parameters, including hemispherical solutions. The Tayler-Spruit dynamos reported here are found to satisfy magnetostrophic equilibrium and achieve efficient turbulent transport of angular momentum, following Spruit's heuristic prediction.
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- 2023
35. Reconstructing Cardiac Electrical Excitations from Optical Mapping Recordings
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Marcotte, Christopher D., Hoffman, Matthew J., Fenton, Flavio H., and Cherry, Elizabeth M.
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Quantitative Biology - Quantitative Methods ,Computer Science - Computational Engineering, Finance, and Science - Abstract
The reconstruction of electrical excitation patterns through the unobserved depth of the tissue is essential to realizing the potential of computational models in cardiac medicine. We have utilized experimental optical-mapping recordings of cardiac electrical excitation on the epicardial and endocardial surfaces of a canine ventricle as observations directing a local ensemble transform Kalman Filter (LETKF) data assimilation scheme. We demonstrate that the inclusion of explicit information about the stimulation protocol can marginally improve the confidence of the ensemble reconstruction and the reliability of the assimilation over time. Likewise, we consider the efficacy of stochastic modeling additions to the assimilation scheme in the context of experimentally derived observation sets. Approximation error is addressed at both the observation and modeling stages, through the uncertainty of observations and the specification of the model used in the assimilation ensemble. We find that perturbative modifications to the observations have marginal to deleterious effects on the accuracy and robustness of the state reconstruction. Further, we find that incorporating additional information from the observations into the model itself (in the case of stimulus and stochastic currents) has a marginal improvement on the reconstruction accuracy over a fully autonomous model, while complicating the model itself and thus introducing potential for new types of model error. That the inclusion of explicit modeling information has negligible to negative effects on the reconstruction implies the need for new avenues for optimization of data assimilation schemes applied to cardiac electrical excitation., Comment: main text: 18 pages, 10 figures; supplement: 5 pages, 9 figures, 2 movies
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- 2023
36. Regions of Reliability in the Evaluation of Multivariate Probabilistic Forecasts
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Marcotte, Étienne, Zantedeschi, Valentina, Drouin, Alexandre, and Chapados, Nicolas
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Computer Science - Machine Learning ,Statistics - Machine Learning - Abstract
Multivariate probabilistic time series forecasts are commonly evaluated via proper scoring rules, i.e., functions that are minimal in expectation for the ground-truth distribution. However, this property is not sufficient to guarantee good discrimination in the non-asymptotic regime. In this paper, we provide the first systematic finite-sample study of proper scoring rules for time-series forecasting evaluation. Through a power analysis, we identify the "region of reliability" of a scoring rule, i.e., the set of practical conditions where it can be relied on to identify forecasting errors. We carry out our analysis on a comprehensive synthetic benchmark, specifically designed to test several key discrepancies between ground-truth and forecast distributions, and we gauge the generalizability of our findings to real-world tasks with an application to an electricity production problem. Our results reveal critical shortcomings in the evaluation of multivariate probabilistic forecasts as commonly performed in the literature., Comment: 47 pages, 37 figures, camera-ready version, Fortieth International Conference on Machine Learning (ICML 2023)
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- 2023
37. Competency-Based Education as Curriculum and Assessment for Integrative Learning
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Marcotte, Kayla M. and Gruppen, Larry D.
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Integrative learning and competency-based education are both evolving as major themes in education. Integrative learning emphasizes that knowledge from different domains and contexts are brought together to enhance the learner's experience. The emphasis on integrated learning has sparked the development of integrative curriculum, which methodically brings knowledge and skills together in ways that reinforce learning. Competency-based medical education (CBME) is an educational method that assumes integrative learning by relying on defined competencies for learners to master during their education. CBME is an illustration of both integrated learning and integrated curricula. In CBME, learners progress through their program by demonstrating acquisition of competencies, which are often integrative statements in themselves. In integrative learning, the question of how to assess a learner's progress through their program remains a challenge. Entrustable Professional Activities (EPAs) are one tool utilized to assess learning in CBME. EPAs are defined, observable tasks that learners should be able to demonstrate upon entering their profession. Understanding EPAs and how they are used in CBME may provide a framework for assessing integrative learning in diverse educational contexts.
- Published
- 2022
38. Swirling against the forcing: evidence of stable counter-directed sloshing waves in orbital-shaken reservoirs
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Marcotte, Alice, Gallaire, François, and Bongarzone, Alessandro
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Physics - Fluid Dynamics - Abstract
We study the free surface response in a cylindrical container undergoing an elliptic periodic orbit. For small forcing amplitudes and deep liquid layers, we quantify the effect of orbit's aspect ratio onto the surface dynamics in the vicinity of the fluid system's lowest natural frequency. We provide experimental evidences of the existence of a frequency range where stable swirling can be either co- or counter-directed with respect to the container's direction of motion. Our findings are successfully predicted by an inviscid asymptotic model, amended with a heuristic damping.
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- 2023
39. Super-harmonically resonant swirling waves in longitudinally forced circular cylinders
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Marcotte, Alice, Gallaire, François, and Bongarzone, Alessandro
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Physics - Fluid Dynamics - Abstract
Resonant sloshing in circular cylinders was studied by Faltinsen et al. (2016), whose theory was used to describe steady-state resonant waves due to time-harmonic container's elliptic orbits. In the limit of longitudinal container motions, a symmetry-breaking of the planar wave solution occurs, with clockwise and anti-clockwise swirling equally likely. In addition to this primary harmonic dynamics, previous experiments have unveiled that diverse super-harmonic dynamics are observable far from primary resonances. Among these, the so-called double-crest (DC) dynamics, first observed by Reclari et al. (2014) for rotary sloshing, is particularly relevant, as its manifestation is the most favored by the spatial structure of the external driving. Following Bongarzone et al. (2022a), in this work we develop a weakly nonlinear (WNL) analysis to describe the system response to super-harmonic longitudinal forcing. The resulting system of amplitude equations predicts that a planar wave symmetry-breaking via stable swirling may also occur under super-harmonic excitation. This finding is confirmed by our experimental observations, which identify three possible super-harmonic regimes, i.e. (i) stable planar DC waves, (ii) irregular motion and (iii) stable swirling DC waves, whose corresponding stability boundaries in the forcing frequency-amplitude plane quantitatively match the present theoretical estimates.
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- 2023
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40. Driving Under the Influence of Cannabis: Impact of Combining Toxicology Testing with Field Sobriety Tests.
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Fitzgerald, Robert L, Umlauf, Anya, Hubbard, Jacqueline A, Hoffman, Melissa A, Sobolesky, Philip M, Ellis, Shannon E, Grelotti, David J, Suhandynata, Raymond T, Huestis, Marilyn A, Grant, Igor, and Marcotte, Thomas D
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Clinical Research ,Drug Abuse (NIDA only) ,Substance Misuse ,Clinical Trials and Supportive Activities ,Humans ,Cannabis ,Dronabinol ,Driving Under the Influence ,Marijuana Smoking ,Hallucinogens ,Cannabinoid Receptor Agonists ,Automobile Driving ,Medical Biotechnology ,Medical Biochemistry and Metabolomics ,Clinical Sciences ,General Clinical Medicine - Abstract
BackgroundCannabis is increasingly used both medically and recreationally. With widespread use, there is growing concern about how to identify cannabis-impaired drivers.MethodsA placebo-controlled randomized double-blinded protocol was conducted to study the effects of cannabis on driving performance. One hundred ninety-one participants were randomized to smoke ad libitum a cannabis cigarette containing placebo or delta-9-tetrahydrocannabinol (THC) (5.9% or 13.4%). Blood, oral fluid (OF), and breath samples were collected along with longitudinal driving performance on a simulator (standard deviation of lateral position [SDLP] and car following [coherence]) over a 5-hour period. Law enforcement officers performed field sobriety tests (FSTs) to determine if participants were impaired.ResultsThere was no relationship between THC concentrations measured in blood, OF, or breath and SDLP or coherence at any of the timepoints studied (P > 0.05). FSTs were significant (P < 0.05) for classifying participants into the THC group vs the placebo group up to 188 minutes after smoking. Seventy-one minutes after smoking, FSTs classified 81% of the participants who received active drug as being impaired. However, 49% of participants who smoked placebo (controls) were also deemed impaired at this same timepoint. Combining a 2 ng/mL THC cutoff in OF with positive findings on FSTs reduced the number of controls classified as impaired to zero, 86 minutes after smoking the placebo.ConclusionsRequiring a positive toxicology result in addition to the FST observations substantially improved the classification accuracy regarding possible driving under the influence of THC by decreasing the percentage of controls classified as impaired.
- Published
- 2023
41. Comparative single-cell transcriptomic profile of hybrid immunity induced by adenovirus vector-based COVID-19 vaccines
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García-Vega, Melissa, Wan, Hui, Reséndiz-Sandoval, Mónica, Hinojosa-Trujillo, Diana, Valenzuela, Olivia, Mata-Haro, Verónica, Dehesa-Canseco, Freddy, Solís-Hernández, Mario, Marcotte, Harold, Pan-Hammarström, Qiang, and Hernández, Jesús
- Published
- 2024
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42. A robust, discrete-gradient descent procedure for optimisation with time-dependent PDE and norm constraints
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Mannix, Paul M, Skene, Calum S, Auroux, Didier, and Marcotte, Florence
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Physics - Fluid Dynamics - Abstract
Many physical questions in fluid dynamics can be recast in terms of norm constrained optimisation problems; which in-turn, can be further recast as unconstrained problems on spherical manifolds. Due to the nonlinearities of the governing PDEs, and the computational cost of performing optimal control on such systems, improving the numerical convergence of the optimisation procedure is crucial. Borrowing tools from the optimisation on manifolds community we outline a numerically consistent, discrete formulation of the direct-adjoint looping method accompanied by gradient descent and line-search algorithms with global convergence guarantees. We numerically demonstrate the robustness of this formulation on three example problems of relevance in fluid dynamics and provide an accompanying library SphereManOpt
- Published
- 2022
43. Understanding Users Experiences of a Novel Web-Based Cognitive Behavioral Therapy Platform for Depression and Anxiety: Qualitative Interviews From Pilot Trial Participants.
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Shkel, Jane, Green, Gavin, Le, Stacey, Kaveladze, Benjamin, Marcotte, Veronique, Rushton, Kevin, Nguyen, Theresa, and Schueller, Stephen
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anxiety ,clinical trial ,cognitive behavioral therapy ,depression ,digital mental health intervention ,intervention ,qualitative research - Abstract
BACKGROUND: Digital mental health interventions (DMHIs) can help bridge the gap between the demand for mental health care and availability of treatment resources. The affordances of DMHIs have been proposed to overcome barriers to care such as accessibility, cost, and stigma. Despite these proposals, most evaluations of the DMHI focus on clinical effectiveness, with less consideration of users perspectives and experiences. OBJECTIVE: We conducted a pilot randomized controlled trial of Overcoming Thoughts, a web-based platform that uses cognitive and behavioral principles to address depression and anxiety. The Overcoming Thoughts platform included 2 brief interventions-cognitive restructuring and behavioral experimentation. Users accessed either a version that included asynchronous interactions with other users (crowdsourced platform) or a completely self-guided version (control condition). We aimed to understand the users perspectives and experiences by conducting a subset of interviews during the follow-up period of the trial. METHODS: We used purposive sampling to select a subset of trial participants based on group assignment (treatment and control) and symptom improvement (those who improved and those who did not on primary outcomes). We conducted semistructured interviews with 23 participants during the follow-up period that addressed acceptability, usability, and impact. We conducted a thematic analysis of the interviews until saturation was reached. RESULTS: A total of 8 major themes were identified: possible opportunities to expand the platform; improvements in mental health because of using the platform; increased self-reflection skills; platform being more helpful for certain situations or domains; implementation of skills into users lives, even without direct platform use; increased coping skills because of using the platform; repetitiveness of platform exercises; and use pattern. Although no differences in themes were found among groups based on improvement status (all P values >.05, ranging from .12 to .86), there were 4 themes that differed based on conditions (P values from .01 to .046): helpfulness of self-reflection supported by an exercise summary (greater in control); aiding in slowing thoughts and feeling calmer (greater in control); overcoming patterns of avoidance (greater in control); and repetitiveness of content (greater in the intervention). CONCLUSIONS: We identified the different benefits that users perceived from a novel DMHI and opportunities to improve the platform. Interestingly, we did not note any differences in themes between those who improved and those who did not, but we did find some differences between those who received the control and intervention versions of the platform. Future research should continue to investigate users experiences with DMHIs to better understand the complex dynamics of their use and outcomes.
- Published
- 2023
44. Cam Site Clients’ Perceptions of Changes to Their Communication Skills: Associations with Psychological Need Fulfillment
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Bennett-Brown, Margaret, Kaufman, Ellen M., Marcotte, Alexandra S., and Gesselman, Amanda N.
- Published
- 2024
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45. Spin-down by dynamo action in simulated radiative stellar layers
- Author
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Petitdemange, Ludovic, Marcotte, Florence, and Gissinger, Christophe
- Subjects
Astrophysics - Solar and Stellar Astrophysics - Abstract
The evolution of a star is influenced by its internal rotation dynamics through transport and mixing mechanisms, which are poorly understood. Magnetic fields can play a role in transporting angular momentum and chemical elements, but the origin of magnetism in radiative stellar layers is unclear. Using global numerical simulations, we identify a subcritical transition to turbulence due to the generation of a magnetic dynamo. Our results have many of the properties of the theoretically-proposed Tayler-Spruit dynamo mechanism, which strongly enhances transport of angular momentum in radiative zones. It generates deep toroidal fields that are screened by the stellar outer layers. This mechanism could produce strong magnetic fields inside radiative stars, without an observable field on their surface.
- Published
- 2022
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46. Strong electronic winds blowing under liquid flows on carbon surfaces
- Author
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Lizée, Mathieu, Marcotte, Alice, Coquinot, Baptiste, Kavokine, Nikita, Sobnath, Karen, Barraud, Clément, Bhardwaj, Ankit, Radha, Boya, Niguès, Antoine, Bocquet, Lydéric, and Siria, Alessandro
- Subjects
Condensed Matter - Mesoscale and Nanoscale Physics ,Condensed Matter - Materials Science ,Condensed Matter - Soft Condensed Matter - Abstract
The interface between a liquid and a solid is the location of plethora of intrincate mechanisms at the nanoscale, at the root of their specific emerging properties in natural processes or technological applications. However, while the structural properties and chemistry of interfaces have been intensively explored, the effect of the solid-state electronic transport at the fluid interface has been broadly overlooked up to now. It has been reported that water flowing against carbon-based nanomaterials, such as carbon nanotubes or graphene sheets, does induce electronic currents, but the mechanism at stake remains controversial. Here, we unveil the molecular mechanisms underlying the hydro-electronic couplings by investigating the electronic conversion under flow at the nanoscale. We use a tuning fork-Atomic Force Microscope (AFM) to deposit and displace a micrometric droplet of both ionic and non-ionic liquids on a multilayer graphene sample, while recording the electrical current across the carbon flake. We report measurements of an oscillation-induced current which is several orders of magnitude larger than previously reported for water on carbon , and further boosted by the presence of surface wrinkles on the carbon layer. Our results point to a peculiar momentum transfer mechanism between fluid molecules and charge carriers in the carbon walls mediated by phonon excitations in the solid. Our findings pave the way for active control of fluid transfer at the nanoscale by harnessing the complex interplay between collective excitations in the solid and the molecules in the fluid., Comment: Accepted for publication at PRX
- Published
- 2022
47. Resilience Factors in College Students at Risk of Depression
- Author
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Marcotte, Diane and Villatte, Aude
- Abstract
The college transition constitutes a vulnerability period for at-risk students. Although several risk factors associated with depression have been identified in the young adult population, very few studies to date have focused on the aspect of resilience during this academic transition. In the present study, a subgroup of resilient students, who did not report depressive symptoms despite experiencing some family risk factors, was compared to a subgroup of depressive students. The results revealed that, among these variables, a low level of dysfunctional attitudes related to dependency and well-defined personal goals can be considered as being higher resiliency variables.
- Published
- 2021
48. Lactobacilli as a Vector for Delivery of Nanobodies against Norovirus Infection.
- Author
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Yuki, Yoshikazu, Zuo, Fanglei, Kurokawa, Shiho, Uchida, Yohei, Sato, Shintaro, Sakon, Naomi, Hammarström, Lennart, Kiyono, Hiroshi, and Marcotte, Harold
- Subjects
Lactobacillus ,nanobody ,norovirus ,single-domain antibody - Abstract
Passive administration of neutralizing antibodies (Abs) is an attractive strategy for the control of gastrointestinal infections. However, an unanswered practical concern is the need to assure the stability of sufficient amounts of orally administered neutralizing Abs against intestinal pathogens (e.g., norovirus) in the harsh environment of the gastrointestinal tract. To this end, we expressed a single-domain Ab (VHH, nanobody) against norovirus on the cell surface of Lactobacillus, a natural and beneficial commensal component of the gut microbiome. First, we used intestinal epithelial cells generated from human induced pluripotent stem cells to confirm that VHH 1E4 showed neutralizing activity against GII.17 norovirus. We then expressed VHH 1E4 as a cell-wall-anchored form in Lactobacillus paracasei BL23. Flow cytometry confirmed the expression of VHH 1E4 on the surface of lactobacilli, and L. paracasei that expressed VHH 1E4 inhibited the replication of GII.17 norovirus in vitro. We then orally administered VHH 1E4-expressing L. paracasei BL23 to germ-free BALB/c mice and confirmed the presence of lactobacilli with neutralizing activity in the intestine for at least 10 days after administration. Thus, cell-wall-anchored VHH-displaying lactobacilli are attractive oral nanobody deliver vectors for passive immunization against norovirus infection.
- Published
- 2022
49. The Segregation of Students by Income in Public Schools. EdWorkingPaper No. 20-338
- Author
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Annenberg Institute for School Reform at Brown University, Dalane, Kari, and Marcotte, Dave E.
- Abstract
Over the past three decades, children from low-income families and those from more affluent families have increasingly been attending different public schools. While recent work has helped us understand patterns of income segregation between districts and schools within districts, we know very little about segregation of students as they experience school: in the classroom. In this paper, we attempt to advance knowledge of trends in the segregation of students by income at the classroom level. We make use of detailed, student-level administrative data from North Carolina which provides a measure of a student's free/reduced price lunch eligibility, which we refer to as economically disadvantaged (ED) status, along with information on classroom assignments. Since we know the ED status of each student in each classroom, we assess whether ED students are assigned to classes in the same pattern as other students or if are clustered/segregated into different classrooms. We know very little about the magnitude of income-based segregation, and almost nothing about whether this has changed over time, so we provide novel evidence on the question of whether segregation of students by socioeconomic status has increased within schools. We find that within-school segregation has risen by about 10 percent between 2007 and 2014 in elementary and middle schools we study. Further, we find that segregation of ED students within schools is correlated with the level of segregation between schools in districts, and this relationship grew stronger over our panel.
- Published
- 2020
50. TACTiS: Transformer-Attentional Copulas for Time Series
- Author
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Drouin, Alexandre, Marcotte, Étienne, and Chapados, Nicolas
- Subjects
Computer Science - Machine Learning ,Statistics - Machine Learning - Abstract
The estimation of time-varying quantities is a fundamental component of decision making in fields such as healthcare and finance. However, the practical utility of such estimates is limited by how accurately they quantify predictive uncertainty. In this work, we address the problem of estimating the joint predictive distribution of high-dimensional multivariate time series. We propose a versatile method, based on the transformer architecture, that estimates joint distributions using an attention-based decoder that provably learns to mimic the properties of non-parametric copulas. The resulting model has several desirable properties: it can scale to hundreds of time series, supports both forecasting and interpolation, can handle unaligned and non-uniformly sampled data, and can seamlessly adapt to missing data during training. We demonstrate these properties empirically and show that our model produces state-of-the-art predictions on multiple real-world datasets., Comment: 47 pages, 33 figures, camera-ready version, Thirty-ninth International Conference on Machine Learning (ICML 2022)
- Published
- 2022
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