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192 results on '"Manghi, M"'

3. Thermal Denaturation of Fluctuating DNA Driven by Bending Entropy

Author

Palmeri, J., Manghi, M., and Destainville, N.

Subjects
Condensed Matter - Soft Condensed Matter, Condensed Matter - Statistical Mechanics, Physics - Biological Physics
Abstract

A statistical model of homopolymer DNA, coupling internal base pair states (unbroken or broken) and external thermal chain fluctuations, is exactly solved using transfer kernel techniques. The dependence on temperature and DNA length of the fraction of denaturation bubbles and their correlation length is deduced. The thermal denaturation transition emerges naturally when the chain fluctuations are integrated out and is driven by the difference in bending (entropy dominated) free energy between broken and unbroken segments. Conformational properties of DNA, such as persistence length and mean-square-radius, are also explicitly calculated, leading, e.g., to a coherent explanation for the experimentally observed thermal viscosity transition., Comment: 4 pages, 1 figure

Published
2006
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4. Fluctuation induced interactions between domains in membranes

Author

Dean, D. S. and Manghi, M.

Subjects
Condensed Matter - Soft Condensed Matter
Abstract

We study a model lipid bilayer composed of a mixture of two incompatible lipid types which have a natural tendency to segregate in the absence of membrane fluctuations. The membrane is mechanically characterized by a local bending rigidity $\kappa(\phi)$ which varies with the average local lipid composition $\phi$. We show, in the case where $\kappa$ varies weakly with $\phi$, that the effective interaction between lipids of the same type can either be everywhere attractive or can have a repulsive component at intermediate distances greater than the typical lipid size. When this interaction has a repulsive component, it can prevent macro-phase separation and lead to separation in mesophases with a finite domain size. This effect could be relevant to certain experimental and numerical observations of mesoscopic domains in such systems., Comment: 9 pages RevTex, 1 eps figure

Published
2005
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6. Acoustic detection of bottlenose dolphin depredation on nets and implications for conservation.

Author

La Manna, G., Arrostuto, N., Campisi, S. S., Manghi, M., Fois, N., and Ceccherelli, G.

Subjects
BOTTLENOSE dolphin, DOLPHINS, MARINE mammals, CONFLICT management, FISHING nets, FISHERIES, SUSTAINABLE development
Abstract

Understanding the depredation process is pivotal to the management of conflicts between wildlife and human activities. Depredation by marine mammals on fisheries occurs when animals 'steal' fish from the fishing gear, causing catch loss and damage to gear and catches. The common bottlenose dolphin is a vulnerable species and is the main depredator of coastal static net fisheries in the Mediterranean Sea.The nature and extent of the phenomenon is still poorly understood since evidence is often incomplete or inconsistent mostly due to the different methods used to measure depredation.Here, passive acoustic monitoring devices were used to estimate the consistency between dolphin acoustic detection in proximity to the net and direct dolphin observations and catch measurements at different sites in Sardinia (north‐western Mediterranean Sea). Further, some factors influencing depredation (fishing duration and fishing net length) and changes in catch amount and composition were evaluated.The frequency of dolphin detection based on direct dolphin observations was significantly lower than that based on acoustic monitoring; the latter was related to the amount of catch. Thus, the measurement of catch was more realistically related to depredation than direct dolphin observations. Further, dolphin depredation was related to the duration of the fishing operation.The measure of depredation and catch loss provided here can be used to realistically estimate the damage suffered by fishers and provide preliminary insights to guide the development of an approach for sustainable coexistence between dolphins and fisheries. [ABSTRACT FROM AUTHOR]

Published
2023
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14. Abstract

Author

Andries, L. J., Sys, S. U., Meulemans, A. L., Schuurkes, J. A. J., Vanheel, B., Van de Voorde, J., De Smet, P., Li, J., Van Driessche, W., Flamion, B., Foulon, S., Abramow, M., Calders, P., Eechaute, W., Lacroix, E., Weyne, I., Hoeben, D., Burvenich, C., Fransen, P., Andries, L. J., Van Bedaf, D., Demolder, M., Sys, S. U., Ouedraogo, R., Lebrun, P., Herchuelz, A., Antoine, M. -H., Vandenput, S., Votion, D., Anciaux, N., Duvivier, D. H., Art, T., Lekeux, P., Votion, D., Ghafir, Y., Vandenput, S., Art, T., Lekeux, P., Geurts, M., Hermans, E., Maloteaux, J. -M., Perrad, B., Noel, B., Lagache, F., Bister, J. L., Paquay, R., Bister, J. L., Derycke, G., Vandermeir, M. A., Paquay, R., de Brouwer, S., Porret, C. -A., Stergiopulos, N., Meister, J. -J., Verbeke, M., Van de Voorde, J., Lameire, N., De Clerck, N. M., De Schuytter, J., Tytgato, J., Buyse, G., Eggermont, J., Droogmans, G., Nilius, B., Daenens, P., Salomone, S., Feron, O., Dessy, C., Morel, N., Godfraind, T., Aloisi, A. M., Sacerdote, P., Lodi, L., Carli, G., Carobi, C., Garinei, G., Miniaci, U. C., Scotto, P., Sabatino, M., Sardo, P., Iurato, L., La Grutta, V., Bagni, M. A., Cecchi, G., Cecchini, E., Colomo, F., Garzella, P., Bottinelli, R., Harridge, S. D. H., Canepari, M., Reggiani, C., Reggiani, Saltin, Bambagioni, D., Fanò, G., Menchetti, G,, Danieli-Betto, P., Esposito, A., Betto, R., Megighian, A., Midrio, M., Betto, D. Danieli, Esposito, A., Megighian, A., Midrio, M., Orizio, C., Liberati, D., Locatelli, C., De Grandis, D., Veicsteinas, A., Angoli, D., Delia, D., Wanke, E., Bramucci, M., Miano, A., Quassinti, L., Maccari, E., Murri, O., Amici, D., Cibelli, G., Jüngling, S., Schoch, S., Gerdest, H. H., Thiel, G., Demori, I., Bottazzi, C., Voci, A., Fugassa, E., Barreca, A., Minuto, F., Gallo, G., Fulle, S., Belia, S., Menchetti, G., Cacchio, M., Fanò, G., Gastaldi, G., Laforenza, U., Ferrari, G., Rindi, G., Doni, M. G., Padoin, E., Residori, O., Cesaro, M., Toma, L., Rubini, A., Mutinelli, F, Paulesu, L., Romagnolie, R., Cintorino, M., Pippia, P., Meloni, M. A., Sciola, L., Spano, A., Cogoli-Greuter, M., Cogoli, A., Sardini, A., Mintenig, G. M., Valverde, M. A., Sepùlveda, F. V., Gill, D. R., Hyde, S. C., Higgins, C. F., McNaughton, P. A., Spena, A., Arcuri, M. T., Bonofiglio, S., Chimenti, R., Covello, C., De Cicco, T., Mazzulla, S., Martino, G., Tottene, A., Moretti, A., Pietrobon, D., Baccari, M. C., Calamai, F., Staderini, G., Cova, E., Marelli, R., Sommi, P., Ventura, U., Lombardi, A. M., Fabris, R., Pagano, C., Federspil, G., Vettor, R., Mancinelli, R., Tonali, P., Servidei, S., Romani, R., Tringali, A., Azzena, G. B., Mulè, F., Serio, R., Postorino, A., Pagano, C., Rizzato, M., Granzotto, M., Lombardi, A. M., Fabris, R., Vettor, R., Federspil, G., Sommi, P., Ricci, V., Romano, M., Ivey, K. J., Ventura, U., Vacca, G., Papillo, B., Mary, D. A. S. G., Battaglia, A., Grossini, E., Vacca, G., Papillo, B., Battaglia, A., Grossini, E., Accili, E. A., Redaelli, G., DiFrancesco, D., Antoniotti, S., Distasi, C., Lovisolo, D., Munaron, L., Bertaso, F., Assandri, R., Mazzanti, M., Bianchi, L., Arcangeli, A., Faravelli, L., Becchetti, A., Coronello, M., Mini, E., Francini, F., Olivotto, M., Wanke, E., Bigiani, A., Kim, D. -J., Roper, S. D., Carabelli, V., Lovallo, M., Magnelli, V., Zucker, H., Carbone, E., D’Angelo, E., Rossi, P., De Filippi, G., Taglietti, V., Faravelli, L., Bianchi, L., Arcangeli, A., Francini, F., Olivotto, M., Wanke, E., Francini, F., Bencini, C., Squecco, R., Guatteo, E., Bacci, A., Franceschetti, S., Avanzini, G., Wanke, E., Magnelli, V., Carbone, E., Mazzanti, M., Assandri, R., Ferroni, A., DiFrancesco, D., Navangione, A., Vellani, V., Rispoli, G., Peres, A., Centinaio, E., Giovannardi, S., Russo, G., Marcotti, W., Prigioni, I., Trequattrini, C., Harper, A. A., Petris, A., Franciolini, F., Zaza, A., Micheletti, M., Brioschi, A., Antonutto, G., Capelli, C., Girardis, M., Zamparo, P., di Prampero, P. E., Antonutto, G., Girardis, M., Tuniz, D., di Prampero, P. E., Filippi, G. M., Troiani, D., Grassi, B., Poole, D. C., Richardson, R. S., Knight, D. R., Erickson, B. K., Wagner, P. D., Aimi, B., Stilli, D., Gallo, P., Sgoifo, A., Lagrasta, C., Olivetti, G., Reali, N., Casti, A., Musso, E., Alloatti, G., Penna, C., Gallo, M. P., Levi, R. C., Fenoglio, I., Appendino, G., Gallo, P., Sgoifo, A., Medici, D., Aimi, B., Manghi, M., Stilli, D., Musso, E., Sgoifo, A., Pasini, E., Gallo, P., Aimi, B., Stilli, D., Ceconi, C., Musso, E., Baldissera, F., Cavallari, P., Locatelli, M., Bartesaghi, R., Gessi, T., Benfenati, F., Valtorta, F., Onofri, F., Poo, M., Greengard, P., Biagini, G., Sala, D., Viani§, P., Kozlov, A. V., Zini, I., Bravin, M., Tempia, F., Strata, P., Brescia, G., Di Benedetto, C., Corsi, P., Cangiano, G., Buttiglione, M., Ambrosini, M., Gennarini, G., Casadio, A., Levi, R. C., Montarolo, P. G., Cesare, P., Stoughton, R., McNaughton, P. A., D’Arcangelo, G., Dodt, H. U., Brancati, A., Zieglgänsberger, W., Errico, P., Ferraresi, A., Barmack, N. H., Pettorossi, V. E., Gasparini, S., D’Ambrosio, R., Janigro, D., DiFrancesco, D., Gritti, I., Marintti, M., Calcaterra, R., Freddi, R., Mancia, M., Imeri, I., Bianchi, S., Mancia, M., Lui, F., Gregory, K. M., Blanks, R. H. I., Giolli, R. A., Benassi, C., Corazza, R., Magherini, P. C., Bardoni, R., Belluzzi, O., Mancinelli, R., Manni, E., Azzena, G. B., Tringali, A., Romani, R., Diana, M., Fratta, W., Manzoni, D., Andre, P., Pompeiano, O., Mazzocchio, R., Rossi, A., Melis, F., Kitura, A., Caria, M. A., Asanuma, H., Melone, M, De Biasi, S, Minelli, A, Conti, F, Minelli, A, Karschin, C, DeBiasi, S, Brecha, N C, Conti, F, Monda, M., Amaro, S., Sullo, A., De Luca, B., Monda, M., Amaro, S., Sullo, A., De Luca, B., Pantò, M. R., Cicirata, F., Parenti, R., Serapide, M. F., Parenti, R., Wassef, M., Cicirata, F., Podda, M. V., Solinas, A., Chessa, G., Deriu, F., Mameli, O., Tolu, E., Pompeiano, O., Andre, P., Manzoni, D., Porro, C. A., Francescato, M. P., Cettolo, V., Diamond, M. E., Baraldi, P., Bazzocchi, M., Rivosecchi, R., Konnerth, A., Rossi, M. L., Martini, M., Pelucchi, B., Fesce, R., Santarelli, L., Schacher, S., Montarolo, P. G., Santarelli, R., Grassi, C., Valente, A., Nisticò, S., Bagetta, G., Azzena, G. B., Scuri, Rossana, Garcia-Gil, Mercedes, Mozzachiodi, Riccardo, Brunelli, Marcello, Stefani, G., Onofri, F., Vaccaro, P., Nielander, H. B., Benfenati, F., Tancredi, V., D’Antuono, M., Siniscalchi, A., Brancati, A., Avoli, M., Vellani, V., Navangione, A., Rispoli, G., Verzè, L., Buffo, A., Rossi, F., Oestreicher, A. B., Gispen, W. H., Strata, P., Zamboni, G., Amici, R., Jones, C. A., Perez, E., Domeniconi, R., Parmeggiani, P. L., Zoli, Michele, Le Novàre, Nicolas, Changeux, Jean -Pierre, Lafortuna, C. L., Reinach, E., Saibene, F., Scotto, P., Zocchi, L., Agostoni, E., and Cremaschi, D.

Published
1996
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19. Effects of cytosine methylation on DNA morphology: An atomic force microscopy study

Author

Cassina, V, Manghi, M, Salerno, D, Tempestini, A, Iadarola, V, Nardo, L, Brioschi, S, Mantegazza, F, CASSINA, VALERIA, SALERNO, DOMENICO, TEMPESTINI, ALESSIA, NARDO, LUCA, BRIOSCHI, SIMONE, MANTEGAZZA, FRANCESCO, Cassina, V, Manghi, M, Salerno, D, Tempestini, A, Iadarola, V, Nardo, L, Brioschi, S, Mantegazza, F, CASSINA, VALERIA, SALERNO, DOMENICO, TEMPESTINI, ALESSIA, NARDO, LUCA, BRIOSCHI, SIMONE, and MANTEGAZZA, FRANCESCO

Abstract

Methylation is one of the most important epigenetic mechanisms in eukaryotes. As a consequence of cytosine methylation, the binding of proteins that are implicated in transcription to gene promoters is severely hindered, which results in gene regulation and, eventually, gene silencing. To date, the mechanisms by which methylation biases the binding affinities of proteins to DNA are not fully understood; however, it has been proposed that changes in double-strand conformations, such as stretching, bending, and over-twisting, as well as local variations in DNA stiffness/flexibility may play a role. The present work investigates, at the single molecule level, the morphological consequences of DNA methylation in vitro. By tracking the atomic force microscopy images of single DNA molecules, we characterize DNA conformations pertaining to two different degrees of methylation. In particular, we observe that methylation induces no relevant variations in DNA contour lengths, but produces measurable incremental changes in persistence lengths. Furthermore, we observe that for the methylated chains, the statistical distribution of angles along the DNA coordinate length is characterized by a double exponential decay, in agreement with what is predicted for polyelectrolytes. The results reported herein support the claim that the biological consequences of the methylation process, specifically difficulties in protein-DNA binding, are at least partially due to DNA conformation modifications.

Published
2016

20. Intermittent Social Conflict: Acute and Long-Term Autonomic Consequences in Rats

Author

Sgoifo, A., Meerlo, P., Pozzato, C., Manghi, M., Stilli, D., Musso, E., and Koolhaas, J.M.

Subjects
Aggressive behavior in animals -- Physiological aspects, Rats -- Behavior, Social conflict -- Physiological aspects, Heart beat -- Physiological aspects, Health, Psychology and mental health, Sociology and social work
Published
2001

29. [The mechanism of impulse initiation: high-resolution epicardial pace-mapping in rat heart]

Author

Macchi E, Baruffi S, Bondavalli A, Cacciani F, Michele Miragoli, Manghi M, Musso E, Olivetti G, Rota M, Stilli D, and Zaniboni M

Subjects
Muscle Fibers, Skeletal, Animals, Heart, Evoked Potentials, Pericardium, Electrodes, Implanted, Rats
Abstract

Simulations of cardiac tissue bidomain model indicate that point cathodal stimulation gives rise to a dog-bone depolarized region (virtual cathode) extending across fibers, limited by two symmetric hyperpolarized regions (virtual anode) extending along fibers. These predictions were experimentally confirmed by optical mapping studies of transmembrane potentials while no direct validation is reported at the extracellular level. The present study aims at defining the influence of the virtual cathode on extracellular potentials by means of high-density epicardial mapping.Epicardial potentials were measured in seven exposed rat hearts by means of a 11 x 11 electrode array with 360 x 540 microns resolution. Cathodal current pulses, 100-200 microA intensity and 1 ms duration, to avoid superposition of stimulus and activation potentials, were delivered from one of the electrode array and unipolar potentials were measured from all other electrodes.a) During stimulus, negative equipotential lines were elliptic along fibers, as expected, but for a 2 mm circular region at the pacing site. b) During 1-2 ms interval between stimulus offset and start of activation, equipotential lines became elliptic across fibers in the presence of the region directly excited by the stimulus field. Start of activation was either symmetric with isochrones initially circular around the pacing site and then elliptic along fibers, or asymmetric initiating at only one side of the pacing site across fibers with isochrones elliptic along fibers. In the latter case, the wave front was blocked through the refractory region directly excited by the stimulus field, subdivided into two wings which collided and merged at the opposite side, giving rise to a plane wave front propagating across fibers away from the pacing site.High spatial resolution epicardial potential mapping reveals the existence of the virtual cathode and its influence on impulse initiation and conduction. The unexpected existence of a region of conduction block at the pacing site, due to spatial asymmetry of normal cardiac tissue which enhances activation threshold at one of the two sides of the virtual cathode, is intriguing since it is one of the requirements for reentry of conduction in the presence of a circuit with decreased conduction velocity and short duration of refractory period.

Published
2001

32. A GIS and Associated Database for the Italian Stranding Network. A Cooperative Project Based on GIS Technologies

Author

PAVIA UNIV (ITALY), Pavan, G., Podesta, M., D'Amico, A., Portunato, N., Fossati, C., Manghi, M., Quero, M., Teloni, V., PAVIA UNIV (ITALY), Pavan, G., Podesta, M., D'Amico, A., Portunato, N., Fossati, C., Manghi, M., Quero, M., and Teloni, V.

Abstract

The "Centro Studi Cetacei" (CSC) is a research group established in 1985 at the Natural History Museum of Milan as part of the Italian Society for Natural Sciences. One of the most important projects of CSC was to create a national network (Italian Stranding Network) to collect data about stranded Cetaceans along the Italian coasts, or entangled in fishing nets, or found dead in open waters. The Centro Studi Cetacei is recognized by the Italian Ministry of Agricultural, Food and Forest Resources, by the C.I.T.E.S. Office and by the Ministry of Environment (Nature Conservation Service). Since 1986 the Italian Stranding Network has been collecting data on more than 2600 strandings (>2700 animals), concerning 12 cetacean species, and has published regular annual reports. The dataset also includes 164 events recorded in the former project "Progetto Cetacei" as well as historical data found on literature and newspapers. As it represents one the most comprehensive dataset available for the Mediterranean Sea, the Italian Stranding Network archive has been chosen as a case study of a Cetacean GIS application.

Published
2001

35. Software and Hardware Sound Analysis Tools for Field Work

Author

UNIVERSITA DEGLI STUDI DI PAVIA (ITALY)CENTRO INTERDISCIPLINARE DI BIOACUSTICA E RICERCHE AMBIENTALI, Pavan, G., Manghi, M., Fossati, C., UNIVERSITA DEGLI STUDI DI PAVIA (ITALY)CENTRO INTERDISCIPLINARE DI BIOACUSTICA E RICERCHE AMBIENTALI, Pavan, G., Manghi, M., and Fossati, C.

Abstract

The latest version of the real-time Digital Signal Processing Workstation developed at CIBRA runs in a standard Windows environment and can use a wide range of sound acquisition devices. It can be based on a notebook to allow on-field use. Depending on the acquisition devices, recording, analysis and display can be performed in real-time up to 500 k samples/sec to provide useful bandwidth to more than 200 kHz. The software was primarily developed for continuous real-time monitoring in bioacoustical studies.

Published
1999

48. Tensioactive Properties of Semidilute Polymer Solutions

Author

Manghi, M. and Aubouy, M.

Abstract

We present a scaling description of adsorbed polymer layers in the presence of a semidilute solution. Within a very simple model where the layer is treated as a thermodynamic ensemble of loops with a large polydispersity in size, we are able to (a) describe the influence of the semidilute solution on the structure of the layer of adsorbed chains, and (b) estimate the variation of the surface tension γ of the solution as a function of the polymerization index of the chains (N) and the monomer volume fraction in the bulk (Φb). Concerning point a, this work provides a continuous picture for the variations of the static properties of the interfacial layer from the dilute case (Φb → 0), to the melt case (Φb → 1). Concerning point b, we find a law γ(Φb, N) of the form (good solvent conditions) γVdW − AΦb5/4 + B(Φb7/8/N1/2) ln(N/Φb7/12N*), where γVdW accounts for van der Waals interactions and N* is a characteristic index of polymerization of the polymer under consideration (A and B are calculated within numerical coefficients of order unity). This law is in good quantitative agreement with experimental measurements and generalizes our recent findings on the case of molten polymer liquid. (Aubouy; Manghi; Raphaël. Phys. Rev. Lett. 2000, 84, 4858.)

Published
2000

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