23 results on '"Malé PJ"'
Search Results
2. Trade-offs in an ant-plant-fungus mutualism.
- Author
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Orivel J, Malé PJ, Lauth J, Roux O, Petitclerc F, Dejean A, and Leroy C
- Subjects
- Animals, French Guiana, Herbivory, Ants physiology, Fungi physiology, Plants, Symbiosis
- Abstract
Species engaged in multiple, simultaneous mutualisms are subject to trade-offs in their mutualistic investment if the traits involved in each interaction are overlapping, which can lead to conflicts and affect the longevity of these associations. We investigate this issue via a tripartite mutualism involving an ant plant, two competing ant species and a fungus the ants cultivate to build galleries under the stems of their host plant to capture insect prey. The use of the galleries represents an innovative prey capture strategy compared with the more typical strategy of foraging on leaves. However, because of a limited worker force in their colonies, the prey capture behaviour of the ants results in a trade-off between plant protection (i.e. the ants patrol the foliage and attack intruders including herbivores) and ambushing prey in the galleries, which has a cascading effect on the fitness of all of the partners. The quantification of partners' traits and effects showed that the two ant species differed in their mutualistic investment. Less investment in the galleries (i.e. in fungal cultivation) translated into more benefits for the plant in terms of less herbivory and higher growth rates and vice versa. However, the greater vegetative growth of the plants did not produce a positive fitness effect for the better mutualistic ant species in terms of colony size and production of sexuals nor was the mutualist compensated by the wider dispersal of its queens. As a consequence, although the better ant mutualist is the one that provides more benefits to its host plant, its lower host-plant exploitation does not give this ant species a competitive advantage. The local coexistence of the ant species is thus fleeting and should eventually lead to the exclusion of the less competitive species., (© 2017 The Author(s).)
- Published
- 2017
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3. Unraveling the biogeographical history of Chrysobalanaceae from plastid genomes.
- Author
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Bardon L, Sothers C, Prance GT, Malé PJ, Xi Z, Davis CC, Murienne J, García-Villacorta R, Coissac E, Lavergne S, and Chave J
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- Base Sequence, Extinction, Biological, Genetic Speciation, Genetic Variation, Phylogeny, Sequence Analysis, DNA, Species Specificity, Time Factors, Chrysobalanaceae classification, Chrysobalanaceae genetics, Genome, Plastid, Phylogeography
- Abstract
Premise of the Study: The complex geological and climatic history of the Neotropics has had major implications on the diversification of plant lineages. Chrysobalanaceae is a pantropical family of trees and shrubs with 75% of its 531 species found in the Neotropics, and a time-calibrated phylogeny of this family should shed light on the tempo of diversification in the Neotropical flora. Previously published phylogenetic hypotheses of this family were poorly supported, and its biogeography remains unclear., Methods: We assembled the complete plastid genome of 51 Chrysobalanaceae species, and increased taxon sampling by Sanger-sequencing of five plastid regions for an additional 88 species. We generated a time-calibrated tree including all 139 Chrsyobalanaceae species and 23 outgroups. We then conducted an ancestral area reconstruction analysis and estimated diversification rates in the family., Key Results: The tree generated with the plastid genome alignment was almost fully resolved. It supports the polyphyly of Licania and Hirtella. The family has diversified starting around the Eocene-Oligocene transition. An ancestral area reconstruction confirms a Paleotropical origin for Chrysobalanaceae with several transoceanic dispersal events. The main Neotropical clade likely resulted from a single migration event from Africa around 28 mya ago, which subsequently underwent rapid diversification., Conclusions: Given the diverse ecologies exhibited by extant species, we hypothesize that the rapid diversification of Chrysobalanaceae following the colonization of the Neotropics was triggered by habitat specialization during the complex geological and paleoclimatic history of the Neotropics., (© 2016 Botanical Society of America.)
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- 2016
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4. From museums to genomics: old herbarium specimens shed light on a C3 to C4 transition.
- Author
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Besnard G, Christin PA, Malé PJ, Lhuillier E, Lauzeral C, Coissac E, and Vorontsova MS
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- Africa, Base Composition, Cell Nucleus genetics, Contig Mapping, Gene Dosage, Genes, Plant, Geography, Multigene Family, Phylogeny, Plastids genetics, Ribosomes genetics, Sequence Analysis, DNA, Species Specificity, Carbon metabolism, Genomics, Museums, Poaceae genetics, Specimen Handling
- Abstract
Collections of specimens held by natural history museums are invaluable material for biodiversity inventory and evolutionary studies, with specimens accumulated over 300 years readily available for sampling. Unfortunately, most museum specimens yield low-quality DNA. Recent advances in sequencing technologies, so called next-generation sequencing, are revolutionizing phylogenetic investigations at a deep level. Here, the Illumina technology (HiSeq) was used on herbarium specimens of Sartidia (subfamily Aristidoideae, Poaceae), a small African-Malagasy grass lineage (six species) characteristic of wooded savannas, which is the C3 sister group of Stipagrostis, an important C4 genus from Africa and SW Asia. Complete chloroplast and nuclear ribosomal sequences were assembled for two Sartidia species, one of which (S. perrieri) is only known from a single specimen collected in Madagascar 100 years ago. Partial sequences of a few single-copy genes encoding phosphoenolpyruvate carboxylases (ppc) and malic enzymes (nadpme) were also assembled. Based on these data, the phylogenetic position of Malagasy Sartidia in the subfamily Aristidoideae was investigated and the biogeographical history of this genus was analysed with full species sampling. The evolutionary history of two genes for C4 photosynthesis (ppc-aL1b and nadpme-IV) in the group was also investigated. The gene encoding the C4 phosphoenolpyruvate caroxylase of Stipagrostis is absent from S. dewinteri suggesting that it is not essential in C3 members of the group, which might have favoured its recruitment into a new metabolic pathway. Altogether, the inclusion of historical museum specimens in phylogenomic analyses of biodiversity opens new avenues for evolutionary studies., (© The Author 2014. Published by Oxford University Press on behalf of the Society for Experimental Biology. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2014
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5. Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family.
- Author
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Malé PJ, Bardon L, Besnard G, Coissac E, Delsuc F, Engel J, Lhuillier E, Scotti-Saintagne C, Tinaut A, and Chave J
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- DNA, Chloroplast chemistry, DNA, Chloroplast genetics, DNA, Mitochondrial chemistry, DNA, Mitochondrial genetics, DNA, Plant chemistry, DNA, Plant genetics, Molecular Sequence Data, Sequence Analysis, DNA, Chrysobalanaceae classification, Chrysobalanaceae genetics, Computational Biology methods, Genome, Plant, Phylogeny
- Abstract
Whole genome sequencing is helping generate robust phylogenetic hypotheses for a range of taxonomic groups that were previously recalcitrant to classical molecular phylogenetic approaches. As a case study, we performed a shallow shotgun sequencing of eight species in the tropical tree family Chrysobalanaceae to retrieve large fragments of high-copy number DNA regions and test the potential of these regions for phylogeny reconstruction. We were able to assemble the nuclear ribosomal cluster (nrDNA), the complete plastid genome (ptDNA) and a large fraction of the mitochondrial genome (mtDNA) with approximately 1000×, 450× and 120× sequencing depth respectively. The phylogenetic tree obtained with ptDNA resolved five of the seven internal nodes. In contrast, the tree obtained with mtDNA and nrDNA data were largely unresolved. This study demonstrates that genome skimming is a cost-effective approach and shows potential in plant molecular systematics within Chrysobalanaceae and other under-studied groups., (© 2014 John Wiley & Sons Ltd.)
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- 2014
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6. Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar.
- Author
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Besnard G, Christin PA, Malé PJ, Coissac E, Ralimanana H, and Vorontsova MS
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- Base Sequence, Cell Nucleus genetics, DNA, Plant chemistry, DNA, Plant genetics, DNA, Ribosomal chemistry, DNA, Ribosomal genetics, Flowers anatomy & histology, Flowers classification, Flowers genetics, Genes, Plant genetics, Genetic Markers, Genomics, Geography, High-Throughput Nucleotide Sequencing, Madagascar, Molecular Sequence Data, Phylogeny, Plant Leaves anatomy & histology, Plant Leaves classification, Plant Leaves genetics, Plastids genetics, Poaceae anatomy & histology, Poaceae genetics, Sequence Analysis, DNA, Evolution, Molecular, Poaceae classification
- Abstract
Background and Aims: An accurate characterization of biodiversity requires analyses of DNA sequences in addition to classical morphological descriptions. New methods based on high-throughput sequencing may allow investigation of specimens with a large set of genetic markers to infer their evolutionary history. In the grass family, the phylogenetic position of the monotypic genus Lecomtella, a rare bamboo-like endemic from Madagascar, has never been appropriately evaluated. Until now its taxonomic treatment has remained controversial, indicating the need for re-evaluation based on a combination of molecular and morphological data., Methods: The phylogenetic position of Lecomtella in Poaceae was evaluated based on sequences from the nuclear and plastid genomes generated by next-generation sequencing (NGS). In addition, a detailed morphological description of L. madagascariensis was produced, and its distribution and habit were investigated in order to assess its conservation status., Key Results: The complete plastid sequence, a ribosomal DNA unit and fragments of low-copy nuclear genes (phyB and ppc) were obtained. All phylogenetic analyses place Lecomtella as an isolated member of the core panicoids, which last shared a common ancestor with other species >20 million years ago. Although Lecomtella exhibits morphological characters typical of Panicoideae, an unusual combination of traits supports its treatment as a separate group., Conclusions: The study showed that NGS can be used to generate abundant phylogenetic information rapidly, opening new avenues for grass phylogenetics. These data clearly showed that Lecomtella forms an isolated lineage, which, in combination with its morphological peculiarities, justifies its treatment as a separate tribe: Lecomtelleae. New descriptions of the tribe, genus and species are presented with a typification, a distribution map and an IUCN conservation assessment.
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- 2013
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7. Permanent genetic resources added to molecular ecology resources database 1 December 2012-31 January 2013.
- Author
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Arranz SE, Avarre JC, Balasundaram C, Bouza C, Calcaterra NB, Cezilly F, Chen SL, Cipriani G, Cruz VP, D'Esposito D, Daniel C, Dejean A, Dharaneedharan S, Díaz J, Du M, Durand JD, Dziadek J, Foresti F, Peng-cheng F, Gao QB, García G, Gauffre-Autelin P, Giovino A, Goswami M, Guarino C, Guerra-Varela J, Gutiérrez V, Harris DJ, Heo MS, Khan G, Kim M, Lakra WS, Lauth J, Leclercq P, Lee J, Lee SH, Lee S, Lee T, Li YH, Liu H, Liu S, Malé PJ, Mandhan RP, Martinez P, Mayer VE, Mendel J, Mendes NJ, Mendonça FF, Minias A, Minias P, Oh KS, Oliveira C, Orivel J, Orsini L, Pardo BG, Perera A, Procaccini G, Rato C, Ríos N, Scibetta S, Sharma BS, Sierens T, Singh A, Terer T, Triest L, Urbánková S, Vera M, Villanova GV, Voglmayr H, Vyskočilová M, Wang H, Wang JL, Wattier RA, Xing R, Yadav K, Yin G, Yuan Y, Yun JC, Zhang FQ, Zhang JH, and Zhuang Z
- Subjects
- DNA Primers genetics, Species Specificity, Databases, Genetic statistics & numerical data, Microsatellite Repeats genetics
- Abstract
This article documents the addition of 268 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Alburnoides bipunctatus, Chamaerops humilis, Chlidonias hybrida, Cyperus papyrus, Fusarium graminearum, Loxigilla barbadensis, Macrobrachium rosenbergii, Odontesthes bonariensis, Pelteobagrus vachelli, Posidonia oceanica, Potamotrygon motoro, Rhamdia quelen, Sarotherodon melanotheron heudelotii, Sibiraea angustata, Takifugu rubripes, Tarentola mauritanica, Trimmatostroma sp. and Wallago attu. These loci were cross-tested on the following species: Alburnoides fasciatus, Alburnoides kubanicus, Alburnoides maculatus, Alburnoides ohridanus, Alburnoides prespensis, Alburnoides rossicus, Alburnoides strymonicus, Alburnoides thessalicus, Alburnoides tzanevi, Carassius carassius, Fusarium asiaticum, Leucaspius delineatus, Loxigilla noctis dominica, Pelecus cultratus, Phoenix canariensis, Potamotrygon falkneri, Trachycarpus fortune and Vimba vimba., (© 2013 Blackwell Publishing Ltd.)
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- 2013
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8. Predation success by a plant-ant indirectly favours the growth and fitness of its host myrmecophyte.
- Author
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Dejean A, Orivel J, Rossi V, Roux O, Lauth J, Malé PJ, Céréghino R, and Leroy C
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- Animals, Chrysobalanaceae parasitology, Plants parasitology, Predatory Behavior physiology, Symbiosis physiology, Ants physiology
- Abstract
Mutualisms, or interactions between species that lead to net fitness benefits for each species involved, are stable and ubiquitous in nature mostly due to "byproduct benefits" stemming from the intrinsic traits of one partner that generate an indirect and positive outcome for the other. Here we verify if myrmecotrophy (where plants obtain nutrients from the refuse of their associated ants) can explain the stability of the tripartite association between the myrmecophyte Hirtella physophora, the ant Allomerus decemarticulatus and an Ascomycota fungus. The plant shelters and provides the ants with extrafloral nectar. The ants protect the plant from herbivores and integrate the fungus into the construction of a trap that they use to capture prey; they also provide the fungus and their host plant with nutrients. During a 9-month field study, we over-provisioned experimental ant colonies with insects, enhancing colony fitness (i.e., more winged females were produced). The rate of partial castration of the host plant, previously demonstrated, was not influenced by the experiment. Experimental plants showed higher δ(15)N values (confirming myrmecotrophy), plus enhanced vegetative growth (e.g., more leaves produced increased the possibility of lodging ants in leaf pouches) and fitness (i.e., more fruits produced and more flowers that matured into fruit). This study highlights the importance of myrmecotrophy on host plant fitness and the stability of ant-myrmecophyte mutualisms.
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- 2013
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9. High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries.
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Malausa T, Gilles A, Meglécz E, Blanquart H, Duthoy S, Costedoat C, Dubut V, Pech N, Castagnone-Sereno P, Délye C, Feau N, Frey P, Gauthier P, Guillemaud T, Hazard L, Le Corre V, Lung-Escarmant B, Malé PJ, Ferreira S, and Martin JF
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- Animals, High-Throughput Nucleotide Sequencing methods, Bees genetics, DNA chemistry, DNA genetics, Gene Library, Microsatellite Repeats, Molecular Typing methods
- Abstract
Microsatellites (or SSRs: simple sequence repeats) are among the most frequently used DNA markers in many areas of research. The use of microsatellite markers is limited by the difficulties involved in their de novo isolation from species for which no genomic resources are available. We describe here a high-throughput method for isolating microsatellite markers based on coupling multiplex microsatellite enrichment and next-generation sequencing on 454 GS-FLX Titanium platforms. The procedure was calibrated on a model species (Apis mellifera) and validated on 13 other species from various taxonomic groups (animals, plants and fungi), including taxa for which severe difficulties were previously encountered using traditional methods. We obtained from 11,497 to 34,483 sequences depending on the species and the number of detected microsatellite loci ranged from 199 to 5791. We thus demonstrated that this procedure can be readily and successfully applied to a large variety of taxonomic groups, at much lower cost than would have been possible with traditional protocols. This method is expected to speed up the acquisition of high-quality genetic markers for nonmodel organisms., (© 2011 Blackwell Publishing Ltd.)
- Published
- 2011
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10. Specific, non-nutritional association between an ascomycete fungus and Allomerus plant-ants.
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Ruiz-González MX, Malé PJ, Leroy C, Dejean A, Gryta H, Jargeat P, Quilichini A, and Orivel J
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- Animals, Ants genetics, Ascomycota genetics, Haplotypes, Species Specificity, Ants physiology, Ascomycota physiology, Behavior, Animal, Chrysobalanaceae microbiology, Cordia microbiology, Symbiosis
- Abstract
Ant-fungus associations are well known from attine ants, whose nutrition is based on a symbiosis with basidiomycete fungi. Otherwise, only a few non-nutritional ant-fungus associations have been recorded to date. Here we focus on one of these associations involving Allomerus plant-ants that build galleried structures on their myrmecophytic hosts in order to ambush prey. We show that this association is not opportunistic because the ants select from a monophyletic group of closely related fungal haplotypes of an ascomycete species from the order Chaetothyriales that consistently grows on and has been isolated from the galleries. Both the ants' behaviour and an analysis of the genetic population structure of the ants and the fungus argue for host specificity in this interaction. The ants' behaviour reveals a major investment in manipulating, growing and cleaning the fungus. A molecular analysis of the fungus demonstrates the widespread occurrence of one haplotype and many other haplotypes with a lower occurrence, as well as significant variation in the presence of these fungal haplotypes between areas and ant species. Altogether, these results suggest that such an interaction might represent an as-yet undescribed type of specific association between ants and fungus in which the ants cultivate fungal mycelia to strengthen their hunting galleries.
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- 2011
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11. Dynamics of the association between a long-lived understory myrmecophyte and its specific associated ants.
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Orivel J, Lambs L, Malé PJ, Leroy C, Grangier J, Otto T, Quilichini A, and Dejean A
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- Animals, Feeding Behavior physiology, Nesting Behavior physiology, Reproduction, Species Specificity, Time Factors, Ants physiology, Biological Evolution, Chrysobalanaceae physiology, Ecosystem, Symbiosis
- Abstract
Myrmecophytic symbioses are widespread in tropical ecosystems and their diversity makes them useful tools for understanding the origin and evolution of mutualisms. Obligate ant-plants, or myrmecophytes, provide a nesting place, and, often, food to a limited number of plant-ant species. In exchange, plant-ants protect their host plants from herbivores, competitors and pathogens, and can provide them with nutrients. Although most studies to date have highlighted a similar global pattern of interactions in these systems, little is known about the temporal structuring and dynamics of most of these associations. In this study we focused on the association between the understory myrmecophyte Hirtella physophora (Chrysobalanaceae) and its obligate ant partner Allomerus decemarticulatus (Myrmicinae). An examination of the life histories and growth rates of both partners demonstrated that this plant species has a much longer lifespan (up to about 350 years) than its associated ant colonies (up to about 21 years). The size of the ant colonies and their reproductive success were strongly limited by the available nesting space provided by the host plants. Moreover, the resident ants positively affected the vegetative growth of their host plant, but had a negative effect on its reproduction by reducing the number of flowers and fruits by more than 50%. Altogether our results are important to understanding the evolutionary dynamics of ant-plant symbioses. The highly specialized interaction between long-lived plants and ants with a shorter lifespan produces an asymmetry in the evolutionary rates of the interaction which, in return, can affect the degree to which the interests of the two partners converge.
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- 2011
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12. Effect of antiviral therapy on circulating cytokeratin-18 fragments in patients with chronic hepatitis C.
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Sgier C, Müllhaupt B, Gerlach T, Moradpour D, Negro F, Malé PJ, Heim MH, Malinverni R, Cerny A, and Dufour JF
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- Alanine Transaminase blood, Apoptosis, Cohort Studies, Hepacivirus genetics, Hepacivirus physiology, Hepatitis C, Chronic virology, Hepatocytes physiology, Humans, RNA, Viral blood, Recurrence, Switzerland, Treatment Outcome, Viremia drug therapy, Viremia virology, Antiviral Agents therapeutic use, Hepacivirus drug effects, Hepatitis C, Chronic drug therapy, Keratin-18 blood, Viral Load drug effects
- Abstract
Hepatocellular apoptosis plays a major role in the pathogenesis of chronic hepatitis C. It can be measured noninvasively by determining the circulating levels of cytokeratin-18 fragments. We hypothesized that the effect of antiviral therapy on this parameter will be different in patients with a sustained virological response, relapse (REL) and nonresponse (NR). We quantified cytokeratin-18 fragments in plasma of patients participating in the Swiss Hepatitis C cohort, who received antiviral therapy without stopping because of sides effects. A total of 315 patients were included, 183 with a sustained response, 64 with NR and 68 who relapsed. Mean levels ±SD of circulating cytokeratin-18 fragments before therapy were 174 ± 172 U/L for responsders, 188 ± 145 for nonresponders and 269 ± 158 U/L for patients who relapsed. The values were significantly higher in the REL group (ANOVA P < 0.006). A sustained response was associated with a significant improvement of the plasma levels (94 ± 92 U/L, paired test P < 0.000001), whereas there was no improvement in the nonresponder group (183 ± 158 U/L) and in the relapser group (158 ± 148 U/L). There was a weak correlation between alanine aminotransferase (ALT) and cytokeratin-18 fragment levels (r² = 0.35, P < 0.000001) before therapy but not after therapy and none with hepatitis C virus (HCV) viremia. Successful antiviral therapy results in a significant decrease in circulating levels of cytokeratin-18 fragments arguing for a reduction in hepatocellular apoptosis after clearance of the HCV. Baseline cytokeratin-18 fragment levels are higher in relapsers. Correlations with ALT are weak, suggesting that these two tests measure different but related processes., (© 2010 Blackwell Publishing Ltd.)
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- 2010
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13. Permanent Genetic Resources added to Molecular Ecology Resources Database 1 June 2010 - 31 July 2010.
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Andris M, Aradottir GI, Arnau G, Audzijonyte A, Bess EC, Bonadonna F, Bourdel G, Bried J, Bugbee GJ, Burger PA, Chair H, Charruau PC, Ciampi AY, Costet L, Debarro PJ, Delatte H, Dubois MP, Eldridge MD, England PR, Enkhbileg D, Fartek B, Gardner MG, Gray KA, Gunasekera RM, Hanley SJ, Havil N, Hereward JP, Hirase S, Hong Y, Jarne P, Jianfei Q, Johnson RN, Kanno M, Kijima A, Kim HC, Kim KS, Kim WJ, Larue E, Lee JW, Lee JH, Li C, Liao M, Lo N, Lowe AJ, Malausa T, Malé PJ, Marko MD, Martin JF, Messing R, Miller KJ, Min BW, Myeong JI, Nibouche S, Noack AE, Noh JK, Orivel J, Park CJ, Petro D, Prapayotin-Riveros K, Quilichini A, Reynaud B, Riginos C, Risterucci AM, Rose HA, Sampaio I, Silbermayr K, Silva MB, Tero N, Thum RA, Vinson CC, Vorsino A, Vossbrinck CR, Walzer C, White JC, Wieczorek A, and Wright M
- Abstract
This article documents the addition of 205 microsatellite marker loci to the Molecular Ecology Resources Database. Loci were developed for the following species: Bagassa guianensis, Bulweria bulwerii, Camelus bactrianus, Chaenogobius annularis, Creontiades dilutus, Diachasmimorpha tryoni, Dioscorea alata, Euhrychiopsis lecontei, Gmelina arborea, Haliotis discus hannai, Hirtella physophora, Melanaphis sacchari, Munida isos, Thaumastocoris peregrinus and Tuberolachnus salignus. These loci were cross-tested on the following species: Halobaena caerulea, Procellaria aequinoctialis, Oceanodroma monteiroi, Camelus ferus, Creontiades pacificus, Dioscorea rotundata, Dioscorea praehensilis, Dioscorea abyssinica, Dioscorea nummularia, Dioscorea transversa, Dioscorea esculenta, Dioscorea pentaphylla, Dioscorea trifida, Hirtella bicornis, Hirtella glandulosa, Licania alba, Licania canescens, Licania membranaceae, Couepia guianensis and 7 undescribed Thaumastocoris species., (© 2010 Blackwell Publishing Ltd.)
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- 2010
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14. Associations between MHC genes and Puumala virus infection in Myodes glareolus are detected in wild populations, but not from experimental infection data.
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Guivier E, Galan M, Malé PJ, Kallio ER, Voutilainen L, Henttonen H, Olsson GE, Lundkvist A, Tersago K, Augot D, Cosson JF, and Charbonnel N
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- Animals, Hemorrhagic Fever with Renal Syndrome immunology, Microsatellite Repeats, Molecular Sequence Data, Puumala virus immunology, Rodent Diseases immunology, Sequence Analysis, DNA, Arvicolinae virology, Hemorrhagic Fever with Renal Syndrome genetics, Histocompatibility Antigens Class II genetics, Polymorphism, Single-Stranded Conformational, Puumala virus pathogenicity, Rodent Diseases genetics
- Abstract
We analysed the influence of MHC class II Dqa and Drb genes on Puumala virus (PUUV) infection in bank voles (Myodes glareolus). We considered voles sampled in five European localities or derived from a previous experiment that showed variable infection success of PUUV. The genetic variation observed in the Dqa and Drb genes was assessed by using single-strand conformation polymorphism and pyrosequencing methods, respectively. Patterns were compared with those obtained from 13 microsatellites. We revealed significant genetic differentiation between PUUV-seronegative and -seropositive bank voles sampled in wild populations, at the Drb gene only. The absence of genetic differentiation observed at neutral microsatellites confirmed the important role of selective pressures in shaping these Drb patterns. Also, we found no significant associations between infection success and MHC alleles among laboratory-colonized bank voles, which is explained by a loss of genetic variability that occurred during the captivity of these voles.
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- 2010
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15. Indirect defense in a highly specific ant-plant mutualism.
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Grangier J, Dejean A, Malé PJ, and Orivel J
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- Animals, Chrysobalanaceae physiology, Cultural Evolution, Ecosystem, Plant Diseases, Plant Leaves, Poaceae, Symbiosis, Trees, Ants physiology, Plant Physiological Phenomena
- Abstract
Although associations between myrmecophytes and their plant ants are recognized as a particularly effective form of protective mutualism, their functioning remains incompletely understood. This field study examined the ant-plant Hirtella physophora and its obligate ant associate Allomerus decemarticulatus. We formulated two hypotheses on the highly specific nature of this association: (1) Ant presence should be correlated with a marked reduction in the amount of herbivory on the plant foliage; (2) ant activity should be consistent with the "optimal defense" theory predicting that the most vulnerable and valuable parts of the plant are the best defended. We validated the first hypothesis by demonstrating that for ant-excluded plants, expanding leaves, but also newly matured ones in the long term, suffered significantly more herbivore damage than ant-inhabited plants. We showed that A. decemarticulatus workers represent both constitutive and inducible defenses for their host, by patrolling its foliage and rapidly recruiting nestmates to foliar wounds. On examining how these activities change according to the leaves' developmental stage, we found that the number of patrolling ants dramatically decreased as the leaves matured, while leaf wounds induced ant recruitment regardless of the leaf's age. The resulting level of these indirect defenses was roughly proportional to leaf vulnerability and value during its development, thus validating our second hypothesis predicting optimal protection. This led us to discuss the factors influencing ant activity on the plant's surface. Our study emphasizes the importance of studying both the constitutive and inducible components of indirect defense when evaluating its efficacy and optimality.
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- 2008
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16. Sirolimus-induced inflammatory papules with acquired reactive perforating collagenosis.
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Lübbe J, Sorg O, Malé PJ, Saurat JH, and Masouyé I
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- Acneiform Eruptions drug therapy, Acneiform Eruptions pathology, Anti-Inflammatory Agents therapeutic use, Collagen analysis, Collagen Diseases drug therapy, Collagen Diseases pathology, Female, Humans, Hydroxychloroquine therapeutic use, Liver Transplantation, Middle Aged, Sebaceous Glands pathology, Sebum chemistry, Sirolimus pharmacokinetics, Skin pathology, Acneiform Eruptions chemically induced, Collagen Diseases chemically induced, Drug Eruptions etiology, Immunosuppressive Agents adverse effects, Sirolimus adverse effects
- Abstract
Sirolimus is an immunosuppressive macrolide with antineoplasic properties that is increasingly used in posttransplantation immunosuppression. The treatment is frequently associated with cutaneous side effects such as sirolimus-associated acneiform facial dermatitis, which has been observed in up to 50% of treated patients. We report a 51-year-old female with liver transplantation who developed inflammatory papules and nodules on the face and the upper chest 3 weeks after the initiation of sirolimus therapy. Sequential biopsies revealed lymphocytic infiltration of the dermis with a peculiar pattern of sebotropism, while older lesions showed acquired reactive perforating collagenosis. The lesions were responsive to hydroxychloroquine treatment despite continued sirolimus treatment.
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- 2008
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17. Fibrinogen gamma375 arg-->trp mutation (fibrinogen aguadilla) causes hereditary hypofibrinogenemia, hepatic endoplasmic reticulum storage disease and cirrhosis.
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Rubbia-Brandt L, Neerman-Arbez M, Rougemont AL, Malé PJ, and Spahr L
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- Adult, Afibrinogenemia metabolism, Afibrinogenemia pathology, Amino Acid Sequence, Amino Acid Substitution, Arginine genetics, Arginine metabolism, Family Health, Fibrinogen metabolism, Hepatocytes metabolism, Hepatocytes pathology, Humans, Inclusion Bodies metabolism, Inclusion Bodies pathology, Liver metabolism, Liver pathology, Liver Cirrhosis metabolism, Liver Cirrhosis pathology, Male, Middle Aged, Molecular Sequence Data, Tryptophan genetics, Tryptophan metabolism, Afibrinogenemia genetics, Endoplasmic Reticulum metabolism, Fibrinogen genetics, Liver Cirrhosis genetics, Mutation, Missense, Point Mutation
- Abstract
Hypofibrinogenemia is a rare inherited disorder characterized by low levels of circulating fibrinogen, caused by mutations within 1 of the 3 fibrinogen genes. We report here the case of a 61-year-old man with chronic liver function test alterations. Liver biopsy examination revealed chronic hepatitis complicated by cirrhosis and weakly eosinophilic globular cytoplasmic inclusions within the hepatocytes, faintly stained with PAS-diastase. On immunohistochemistry, the inclusions reacted strongly with human antifibrinogen antibodies. Coagulation investigations of the propositus and his 2 sons showed low functional and antigenic fibrinogen concentrations that were indicative of hypofibrinogenemia. A liver biopsy performed on the 28-year-old son demonstrated the same globular cytoplasmic inclusions, albeit without associated chronic liver disease. PCR amplification followed by sequencing showed that all 3 were heterozygous for a CGG>TGG mutation at codon 375 of the fibrinogen gamma-chain gene (FGG), corresponding to an Arg>Trp substitution. This is the first in an adult male and the second published case with a discernible hepatic fibrinogen endoplasmic reticulum storage disease due to an FGG Arg375Trp (fibrinogen Aguadilla) mutation. Our results suggest that familial hypofibrinogenemia should be considered in the differential diagnosis of a progressive liver disease associated to hepatocellular intracytoplasmic globular inclusions.
- Published
- 2006
- Full Text
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18. Liver steatosis in chronic hepatitis C: a morphological sign suggesting infection with HCV genotype 3.
- Author
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Rubbia-Brandt L, Leandro G, Spahr L, Giostra E, Quadri R, Malé PJ, and Negro F
- Subjects
- Adult, Aged, Alcoholism, Body Mass Index, Female, Gene Frequency, Genotype, Hepacivirus genetics, Hepatitis C, Chronic virology, Humans, Male, Middle Aged, Multivariate Analysis, RNA, Viral blood, RNA, Viral genetics, Reverse Transcriptase Polymerase Chain Reaction, Risk Factors, Substance Abuse, Intravenous, Fatty Liver pathology, Hepatitis C, Chronic pathology
- Abstract
Aims: To identify factors associated with liver steatosis in chronic hepatitis C., Methods and Results: Occurrence and severity of liver steatosis in 254 chronic hepatitis C patients were compared with presence of alcohol abuse, body mass index (BMI) >26, history of intravenous drug addiction and hepatitis C virus (HCV) genotype. Steatosis was found in 109 (43%) patients. The occurrence of steatosis was significantly associated with ongoing alcohol abuse (P=0.03) or HCV genotype 3 (P= 0.003), but not with BMI >26. A moderate to severe steatosis was present in 60% of patients infected with HCV genotype 3, irrespective of the presence of alcohol abuse, BMI >26 or history of intravenous drug addiction. Using a multivariable stepwise logistic regression analysis, infection with genotype 3 had an odds ratio (OR) of 10 (95% confidence interval (CI)=4.56-22) for a liver steatosis, whereas the presence of a cirrhosis at histology had an OR=0.256 (95% CI=0.07-0.92)., Conclusions: A moderate to severe degree of steatosis of the liver is a morphological sign suggestive of infection with HCV genotype 3, independent of other risk factors of a fatty liver, but it may disappear at late stages of the disease.
- Published
- 2001
- Full Text
- View/download PDF
19. Hepatocyte steatosis is a cytopathic effect of hepatitis C virus genotype 3.
- Author
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Rubbia-Brandt L, Quadri R, Abid K, Giostra E, Malé PJ, Mentha G, Spahr L, Zarski JP, Borisch B, Hadengue A, and Negro F
- Subjects
- Adult, Aged, Amino Acid Sequence genetics, Antiviral Agents therapeutic use, Female, Genotype, Hepatitis C, Chronic immunology, Hepatitis C, Chronic pathology, Humans, Immunocompetence, Interferon-alpha therapeutic use, Liver Cirrhosis drug therapy, Liver Cirrhosis virology, Liver Transplantation, Male, Middle Aged, Molecular Sequence Data, Nucleocapsid Proteins genetics, RNA, Viral genetics, Fatty Liver virology, Hepacivirus genetics, Hepatitis C, Chronic complications, Hepatitis C, Chronic virology
- Abstract
Background/aims: Patients infected with the hepatitis C virus (HCV) often have liver steatosis, suggesting the possibility of a viral cytopathic effect. The aim of this study was to correlate the occurrence and severity of liver steatosis with HCV RNA type, level and sequence of the core-encoding region., Methods: We scored the liver steatosis in 101 HCV-infected individuals carefully selected to exclude other risk factors of a fatty liver. Results were compared with HCV RNA genotype and level in serum and liver. In selected patients, we assessed the effect of antiviral therapy on steatosis and the relationship between nucleocapsid sequence heterogeneity and fat infiltration., Results: Steatosis was found in 41 (40.6%) patients, irrespective of sex, age or route of infection. HCV genotype 3 was associated with higher steatosis scores than other genotypes. A significant correlation between steatosis score and titer of intrahepatic HCV RNA was found in patients infected with genotype 3, but not in those infected with genotype 1. In selected patients, response to alpha-interferon was associated with the disappearance of steatosis. Analysis of the nucleocapsid of 14 HCV isolates failed to identify a sequence specifically associated with the development of steatosis., Conclusions: We provide virological and clinical evidence that the steatosis of the liver is the morphological expression of a viral cytopathic effect in patients infected with HCV genotype 3. At variance with published evidence from experimental models, the HCV nucleocapsid protein does not seem to fully explain the lipid accumulation in these patients.
- Published
- 2000
- Full Text
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20. Fixed versus titrated interferon-alpha 2B in chronic hepatitis C. A randomized controlled multicenter trial. The Swiss Association for the Study of the Liver.
- Author
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Reichen J, Bianchi L, Bühler H, Dolivo N, Gonvers JJ, Lavanchy D, Malé PJ, Renner EL, Solioz M, Schmid M, and Zimmermann A
- Subjects
- Adult, Aged, Alanine Transaminase blood, Biopsy, Chronic Disease, Dose-Response Relationship, Drug, Female, Galactose metabolism, Humans, Interferon alpha-2, Interferon-alpha therapeutic use, Liver pathology, Male, Middle Aged, Recombinant Proteins, Time Factors, Titrimetry, Treatment Outcome, Hepatitis C therapy, Interferon-alpha administration & dosage
- Abstract
Background/aim: Interferon has become the mainstay of treatment of chronic hepatitis C; however, duration of treatment and dose remain unresolved questions. The present study aimed to compare standard dose interferon with a titrated dose regimen carried out for 1 year., Methods: This was a randomized, controlled multicenter trial. Patients with chronic hepatitis C were randomly allocated to a control group (n = 30), to a fixed dose group (n = 31) where interferon-alpha 2b 3 MU thrice weekly was given for 1 year or a titrated group (n = 34) where interferon was titrated starting at 5 MU thrice weekly to the lowest dose keeping the patient in remission as assessed by a normal ALT value. Liver biopsies were obtained before and at the end of treatment; in addition, galactose elimination capacity was measured as a measure of cytosolic function., Results: In the control, fixed and titrated groups a complete response was achieved in 2/29, 10/28 and 15/31, respectively (p < 0.001 in favor of treatment, p = n.s. for the two treatments). The corresponding figure for sustained response was 1/29, 5/28 and 6/ 31 (p = n.s). In the titrated group, a complete (sustained) response was achieved with 5 MU in 2 (2), with 4 MU in 1 (0), with 3 MU in 4 (0), with 2 MU in 3 (0) and with 1 MU in 5 (4). Liver biopsy score and galactose elimination capacity improved significantly in responders but not in treatment failures., Conclusions: Both fixed and titrated dosing of interferon given for 1 year induced virus clearance in only a minority of treated patients. However, in a small number of patients, a complete and sustained response can be achieved with low doses of interferon. Dose titration could be an interesting approach to decreasing the cost and side effects in the treatment of chronic hepatitis C.
- Published
- 1996
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21. Efficacy of steroid withdrawal and low-dose interferon treatment in chronic active hepatitis B. Results of a randomized multicenter trial. Swiss Association for the Study of the Liver.
- Author
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Reichen J, Bianchi L, Frei PC, Malé PJ, Lavanchy D, and Schmid M
- Subjects
- Adolescent, Adult, Aged, DNA, Viral analysis, Drug Therapy, Combination, Female, Hepatitis B virus genetics, Humans, Interferon alpha-2, Interferon-alpha administration & dosage, Male, Middle Aged, Recombinant Proteins, Hepatitis B therapy, Hepatitis, Chronic therapy, Interferon-alpha therapeutic use, Prednisone administration & dosage
- Abstract
Fifty-six patients with biopsy-proven, chronic active hepatitis B were included in a multi-center, randomized trial comparing steroid withdrawal followed by 1.5 MU recombinant interferon alpha 2b (Intron) with placebo withdrawal followed by either 1.5 or 5 MU interferon. The patients were equally distributed between the treatment groups with respect to biochemical and histologic activity as well as with respect to DNA levels and quantitative liver function tests. One patient was lost to follow up. After 1 year of treatment, 10/18, 13/19 and 11/18 patients had lost hepatitis B virus DNA in the three groups, respectively (non-significant). Transaminase levels were normal in 27/34 of the responders but in only 4/21 of the non-responders (p < 0.0001). Both galactose elimination capacity and aminopyrine breath test improved significantly in responders, but either did not change (aminopyrine breath test) or deteriorated in non-responders (galactose elimination capacity). Biopsy score improved in both groups but this reached statistical significance only in responders. This effect was due to improvements in both inflammatory and fibrotic activity. Side effects included almost universally a flu-like syndrome, granulocytopenia (1), depression (3) and thyroid dysfunction (2). Two deaths occurred, one due to hepatocellular cancer, and the other to hepatorenal syndrome after spontaneous bacterial peritonitis. A severe cytolytic episode was observed in three patients in the steroid withdrawal group. We conclude that in patients with marked histologic activity, lower doses of interferon may be as effective as the standard dose of 5 MU.(ABSTRACT TRUNCATED AT 250 WORDS)
- Published
- 1994
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22. Low-dose interferon in chronic hepatitis non-A/non-B: effects on quantitative liver function and structure in a randomized, controlled multicenter trial.
- Author
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Reichen J, Solioz M, Bühler H, Gonvers JJ, Knoblauch M, Lavanchy D, Malé PJ, Meyer B, Schmid M, and Bianchi L
- Subjects
- Adolescent, Adult, Aged, Alanine Transaminase metabolism, Chronic Disease, Female, Hepacivirus immunology, Hepacivirus isolation & purification, Hepatitis Antibodies blood, Hepatitis C metabolism, Hepatitis C pathology, Hepatitis C Antibodies, Humans, Interferon alpha-2, Male, Middle Aged, Polymerase Chain Reaction, Recombinant Proteins, Time Factors, Galactose metabolism, Hepatitis C therapy, Interferon-alpha administration & dosage, Liver ultrastructure
- Abstract
In this randomized, controlled multicenter trial we evaluated the effects of recombinant interferon-alpha 2b on galactose elimination capacity and histological activity index in 88 patients with chronic active hepatitis non-A/non-B. Forty-five patients were randomly assigned to treatment with interferon at 1.5 x 10(6) U three times per for 1 year; 43 patients were assigned to no treatment. A complete response (normalization of alanine aminotransferase) was observed, respectively, in 47% and 5% of the two groups (P < 0.006); 47% of these patients suffered a relapse. Thus 22% of patients had a sustained response. Histological activity decreased significantly in responders (P < 0.04) while the biopsy score did not change significantly in nonresponders. In contrast, galactose elimination capacity--a surrogate marker for survival in chronic active hepatitis--was not affected by response to treatment. None of the parameters evaluated, including hepatitis C virus RNA, was able to predict response or relapse. We conclude that low-dose interferon treatment for 1 year is as effective as the recommended treatment schedule.
- Published
- 1993
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23. The effect of ranitidine and cimetidine on the twenty-four hour intragastric acidity profile and nocturnal acid secretion in duodenal ulcer patients.
- Author
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Walt RP, Malé PJ, Hunt RH, Rawlings J, Milton-Thompson GJ, and Misiewicz JJ
- Subjects
- Administration, Oral, Adult, Cimetidine administration & dosage, Furans administration & dosage, Furans blood, Histamine H2 Antagonists administration & dosage, Histamine H2 Antagonists blood, Humans, Male, Ranitidine, Time Factors, Cimetidine pharmacology, Duodenal Ulcer physiopathology, Furans pharmacology, Gastric Acid metabolism, Guanidines pharmacology, Histamine H2 Antagonists pharmacology
- Abstract
Ten duodenal ulcer patients were studied during four 36 h periods, receiving either ranitidine 150 mg twice daily, or ranitidine 200 mg twice daily, or cimetidine 200 mg t.d.s. and 400 mg at night, or placebo. Conditions during the four experimental days were standard. Mean 24 h intragastric hydrogen ion activity on placebo (41.8 +/- 1.5 mmol 1(-1)) was decreased to 21.6 +/- 1.2 mmol 1(-1) on cimetidine, and to 13.1 +/- 1.0 and 12.1 +/- 1.1 mmol 1(-1) by the two dose levels of ranitidine. Nocturnal acid output was decreased by 70% by cimetidine and by 90 and 89% by the two dose levels of ranitidine. In this test system ranitidine was more than four times as potent as cimetidine. Greater decreases in daytime acidity and nocturnal acid secretion were produced by twice-daily ranitidine than by the standard four daily doses of cimetidine
- Published
- 1981
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