45 results on '"Makkiabadi B"'
Search Results
2. Dual-Band Matching Networks Using a Combination of Microstrip Lines and Active Switching Components.
- Author
-
Mohammadi, A., Borjlu, Sh. Rezaei, and Makkiabadi, B.
- Subjects
- *
MICROSTRIP transmission lines , *INSERTION loss (Telecommunication) , *PIN diodes , *COGNITIVE radio , *POWER amplifiers - Abstract
Active switching components are employed to propose a novel compact dual-band matching network (MN) with an adapted frequency in this paper. The design method involves the integration of active switching devices, stepped impedance resonator (SIR), and microstrip transmission line into the frequency response of a dual-band MNs. The PIN diode is employed as an active switching device in the proposed structure to increase the bandwidth of the MNs and attain the desired frequency. The dual-band MNs that are being proposed are fabricated and designed on the Rogers RO4350B substrate for use in Wireless Local Area Networks (WLANs). The simulation results demonstrate a high degree of congruence with the measurements. The maximal insertion losses and return losses in the first band are -1.3 and -24 dB, respectively. In the second band, they are -2.2 and -20.69 dB. The primary benefits of the proposed dual-band MNs are their high attenuation between two passbands, frequency matching capability, suitable return loss, and low insertion loss. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
3. Developing a Multi-channel Beamformer by Enhancing Spatially Constrained ICA for Recovery of Correlated EEG Sources
- Author
-
Samadzadehaghdam, N, primary, MakkiAbadi, B, additional, Eqlimi, E, additional, Mohagheghian, F, additional, Khajehpoor, H, additional, and Harirchian, M H, additional
- Published
- 2018
- Full Text
- View/download PDF
4. Co-Sparse Analysis Model Based Image Registration to Compensate Brain Shift by Using Intra-Operative Ultrasound Imaging
- Author
-
Farnia, P., primary, Najafzadeh, E., additional, Ahmadian, A., additional, Makkiabadi, B., additional, Alimohamadi, M., additional, and Alirezaie, J., additional
- Published
- 2018
- Full Text
- View/download PDF
5. Curvelet based residual complexity objective function for non-rigid registration of pre-operative MRI with intra-operative ultrasound images
- Author
-
Farnia, P., primary, Makkiabadi, B., additional, Ahmadian, A., additional, and Alirezaie, J., additional
- Published
- 2016
- Full Text
- View/download PDF
6. A Geometrically Constrained Multimodal Time Domain Approach for Convolutive Blind Source Separation
- Author
-
Makkiabadi, B., Jarchi, D., Vahid Abolghasemi, and Sanei, S.
- Abstract
Publication in the conference proceedings of EUSIPCO, Barcelona, Spain, 2011
- Published
- 2011
- Full Text
- View/download PDF
7. A new spatially constrained NMF with application to fMRI
- Author
-
Ferdowsi, S., primary, Abolghasemi, V., additional, Makkiabadi, B., additional, and Sanei, S., additional
- Published
- 2011
- Full Text
- View/download PDF
8. Blind separation and localization of correlated P300 subcomponents from single trial recordings using extended PARAFAC2 tensor model
- Author
-
Makkiabadi, B., primary, Jarchi, D., additional, and Sanei, S., additional
- Published
- 2011
- Full Text
- View/download PDF
9. Instantaneous phase tracking of oscillatory signals using emd and Rao-Blackwellised particle filtering.
- Author
-
Jarchi, D., Makkiabadi, B., and Sanei, S.
- Published
- 2011
- Full Text
- View/download PDF
10. Mental fatigue analysis by measuring synchronization of brain rhythms incorporating enhanced empirical mode decomposition.
- Author
-
Jarchi, D., Makkiabadi, B., and Sanei, S.
- Published
- 2010
- Full Text
- View/download PDF
11. A k-subspace based tensor factorization approach for under-determined blind identi??cation.
- Author
-
Makkiabadi, B., Sanei, S., and Marshall, D.
- Published
- 2010
- Full Text
- View/download PDF
12. Blind source extraction of cyclostationary sources with common cyclic frequencies.
- Author
-
Ghaderi, F., Makkiabadi, B., McWhirter, J.G., and Sanei, S.
- Published
- 2010
- Full Text
- View/download PDF
13. Estimation of trial to trial variability of P300 subcomponents by coupled Rao-blackwellised particle filtering.
- Author
-
Jarchi, D., Makkiabadi, B., and Sanei, S.
- Published
- 2009
- Full Text
- View/download PDF
14. Heart and lung sound separation using periodic source extraction method.
- Author
-
Ghaderi, F., Sanei, S., Makkiabadi, B., Abolghasemi, V., and McWhirter, J.G.
- Published
- 2009
- Full Text
- View/download PDF
15. Heart and lung sound separation using periodic source extraction
- Author
-
Ghaderi, F., Abolghasemi, V., Makkiabadi, B., McWhirter, John, S., Sanei, Ghaderi, F., Abolghasemi, V., Makkiabadi, B., McWhirter, John, and S., Sanei
16. Validation of drug-nondrug choice procedure to model maladaptive behavioural allocation to opioid use in rats.
- Author
-
Azizzadeh S, Rahimpour M, Rakhshan K, Makkiabadi B, and Riahi E
- Subjects
- Animals, Male, Rats, Sucrose administration & dosage, Behavior, Animal drug effects, Opioid-Related Disorders, Behavior, Addictive, Rats, Sprague-Dawley, Reinforcement Schedule, Morphine Dependence, Narcotics, Analgesics, Opioid pharmacology, Drug-Seeking Behavior drug effects, Morphine, Self Administration, Conditioning, Operant drug effects, Disease Models, Animal, Reward, Choice Behavior drug effects
- Abstract
Increased allocation of behaviour to substance abuse at the expense of personal and social rewards is a hallmark of addiction that is reflected in several of DSM-5 criteria for diagnosis of substance use disorder. Previous studies focused on refining the self-administration (SA) model to better emulate an addictive state in laboratory animals. Here, we employed concurrent SA of sucrose pellets and morphine as two competing natural and drug rewards, respectively, to validate the feasibility of capturing pathological behavioural allocation in rats. A custom-made three-lever operant chamber was used. With one active and one inactive lever presented, rats were trained to self-administer morphine (0.5 mg/kg/infusion; 2 h/day) under a fixed-ratio 1 (FR-1) schedule until a stable response was achieved. Next, they were trained to self-administer morphine in the presence of a third lever dispensing sucrose pellets (20 mg) under FR-1. Concurrent morphine-sucrose SA sessions (2 h/day) were continued until stable morphine taking behaviour was re-established. In another experiment, rats first established stable sucrose pellet SA (2 h/day, FR-1) and then were trained to take morphine (0.5 mg/kg/infusion; 2 h/day). Subsequently, all rats underwent extinction training, in which morphine was replaced with saline while sucrose pellets were still available upon lever pressing, followed by cue-induced reinstatement of morphine seeking behaviour. Results showed that rats retained morphine SA when sucrose pellets were also available, but they showed binge-like sucrose intake when morphine was removed during the extinction sessions. However, morphine SA did not develop in rats that had previously established sucrose pellet SA. In conclusion, morphine SA developed even in the presence of a potent competing nondrug reward in rats. Adding an effort-based contingent delivery of a natural reward to the standard SA model, this protocol may provide an improved model of drug addiction in laboratory animals., (© 2024 The Author(s). Addiction Biology published by John Wiley & Sons Ltd on behalf of Society for the Study of Addiction.)
- Published
- 2024
- Full Text
- View/download PDF
17. A new full closed-loop brain-machine interface approach based on neural activity: A study based on modeling and experimental studies.
- Author
-
Amiri M, Nazari S, Jafari AH, and Makkiabadi B
- Abstract
Background: The bidirectional brain-machine interfaces algorithms are machines that decode neural response in order to control the external device and encode position of artificial limb to proper electrical stimulation, so that the interface between brain and machine closes. Most BMI researchers typically consider four basic elements: recording technology to extract brain activity, decoding algorithm to translate brain activity to the predicted movement of the external device, external device (prosthetic limb such as a robotic arm), and encoding interface to convert the motion of the external machine to set of the electrical stimulation of the brain., New Method: In this paper, we develop a novel approach for bidirectional brain-machine interface (BMI). First, we propose a neural network model for sensory cortex (S
1 ) connected to the neural network model of motor cortex (M1 ) considering the topographic mapping between S1 and M1 . We use 4-box model in S1 and 4-box in M1 so that each box contains 500 neurons. Individual boxes include inhibitory and excitatory neurons and synapses. Next, we develop a new BMI algorithm based on neural activity. The main concept of this BMI algorithm is to close the loop between brain and mechaical external device., Results: The sensory interface as encoding algorithm convert the location of the external device (artificial limb) into the electrical stimulation which excite the S1 model. The motor interface as decoding algorithm convert neural recordings from the M1 model into a force which causes the movement of the external device. We present the simulation results for the on line BMI which means that there is a real time information exchange between 9 boxes and 4 boxes of S1 -M1 network model and the external device. Also, off line information exchange between brain of five anesthetized rats and externnal device was performed. The proposed BMI algorithm has succeeded in controlling the movement of the mechanical arm towards the target area on simulation and experimental data, so that the BMI algorithm shows acceptable WTPE and the average number of iterations of the algorithm in reaching artificial limb to the target region. Comparison with existing methods and Conclusions : In order to confirm the simulation results the 9-box model of S1 -M1 network was developed and the valid "spike train" algorithm, which has good results on real data, is used to compare the performance accuracy of the proposed BMI algorithm versus "spike train" algorithm on simulation and off line experimental data of anesthetized rats. Quantitative and qualitative results confirm the proper performance of the proposed algorithm compared to algorithm "spike train" on simulations and experimental data., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2023 Published by Elsevier Ltd.)- Published
- 2023
- Full Text
- View/download PDF
18. Recognizing intertwined patterns using a network of spiking pattern recognition platforms.
- Author
-
Amiri M, Jafari AH, Makkiabadi B, and Nazari S
- Subjects
- Action Potentials physiology, Algorithms, Pattern Recognition, Automated methods, Neural Networks, Computer, Artificial Intelligence
- Abstract
Artificial intelligence computing adapted from biology is a suitable platform for the development of intelligent machines by imitating the functional mechanisms of the nervous system in creating high-level activities such as learning, decision making and cognition in today's systems. Here, the concentration is on improvement the cognitive potential of artificial intelligence network with a bio-inspired structure. In this regard, four spiking pattern recognition platforms for recognizing digits and letters of EMNIST, patterns of YALE, and ORL datasets are proposed. All networks are developed based on a similar structure in the input image coding, model of neurons (pyramidal neurons and interneurons) and synapses (excitatory AMPA and inhibitory GABA currents), and learning procedure. Networks 1-4 are trained on Digits, Letters, faces of YALE and ORL, respectively, with the proposed un-supervised, spatial-temporal, and sparse spike-based learning mechanism based on the biological observation of the brain learning. When the networks have reached the highest recognition accuracy in the relevant patterns, the main goal of the article, which is to achieve high-performance pattern recognition system with higher cognitive ability, is followed. The pattern recognition network that is able to detect the combination of multiple patterns which called intertwined patterns has not been discussed yet. Therefore, by integrating four trained spiking pattern recognition platforms in one system configuration, we are able to recognize intertwined patterns. These results are presented for the first time and could be the pioneer of a new generation of pattern recognition networks with a significant ability in smart machines., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
19. Effects of Transcranial Direct Current Stimulation on Attentional Bias to Methamphetamine Cues and Its Association With EEG-Derived Functional Brain Network Topology.
- Author
-
Khajehpour H, Parvaz MA, Kouti M, Hosseini Rafsanjani T, Ekhtiari H, Bakht S, Noroozi A, Makkiabadi B, and Mahmoodi M
- Subjects
- Brain, Cues, Electroencephalography, Humans, Male, Prefrontal Cortex, Attentional Bias, Methamphetamine adverse effects, Transcranial Direct Current Stimulation methods
- Abstract
Background: Although transcranial direct current stimulation (tDCS) has shown to potentially mitigate drug craving and attentional bias to drug-related stimuli, individual differences in such modulatory effects of tDCS are less understood. In this study, we aimed to investigate a source of the inter-subject variability in the tDCS effects that can be useful for tDCS-based treatments of individuals with methamphetamine (MA) use disorder (IMUD)., Methods: Forty-two IMUD (all male) were randomly assigned to receive a single-session of either sham or real bilateral tDCS (anodal right/cathodal left) over the dorsolateral prefrontal cortex. The tDCS effect on MA craving and biased attention to drug stimuli were investigated by quantifying EEG-derived P3 (a measure of initial attentional bias) and late positive potential (LPP; a measure of sustained motivated attention) elicited by these stimuli. To assess the association of changes in P3 and LPP with brain connectivity network (BCN) topology, the correlation between topology metrics, specifically those related to the efficiency of information processing, and the tDCS effect was investigated., Results: The P3 amplitude significantly decreased following the tDCS session, whereas the amplitudes increased in the sham group. The changes in P3 amplitudes were significantly correlated with communication efficiency measured by BCN topology metrics (r = -0.47, P = .03; r = -0.49, P = .02). There was no significant change in LPP amplitude due to the tDCS application., Conclusions: These findings validate that tDCS mitigates initial attentional bias, but not the sustained motivated attention, to MA stimuli. Importantly, however, results also show that the individual differences in the effects of tDCS may be underpinned by communication efficiency of the BCN topology, and therefore, these BCN topology metrics may have the potential to robustly predict the effectiveness of tDCS-based interventions on MA craving and attentional bias to MA stimuli among IMUD., (© Crown copyright 2022.)
- Published
- 2022
- Full Text
- View/download PDF
20. Dose-Response Transcranial Electrical Stimulation Study Design: A Well-Controlled Adaptive Seamless Bayesian Method to Illuminate Negative Valence Role in Tinnitus Perception.
- Author
-
Ghodratitoostani I, Gonzatto OA Jr, Vaziri Z, Delbem ACB, Makkiabadi B, Datta A, Thomas C, Hyppolito MA, Santos ACD, Louzada F, and Leite JP
- Abstract
The use of transcranial Electrical Stimulation (tES) in the modulation of cognitive brain functions to improve neuropsychiatric conditions has extensively increased over the decades. tES techniques have also raised new challenges associated with study design, stimulation protocol, functional specificity, and dose-response relationship. In this paper, we addressed challenges through the emerging methodology to investigate the dose-response relationship of High Definition-transcranial Direct Current Stimulation (HD tDCS), identifying the role of negative valence in tinnitus perception. In light of the neurofunctional testable framework and tES application, hypotheses were formulated to measure clinical and surrogate endpoints. We posited that conscious pairing adequately pleasant stimuli with tinnitus perception results in correction of the loudness misperception and would be reinforced by concurrent active HD-tDCS on the left Dorsolateral Prefrontal Cortex (dlPFC). The dose-response relationship between HD-tDCS specificity and the loudness perception is also modeled. We conducted a double-blind, randomized crossover pilot study with six recruited tinnitus patients. Accrued data was utilized to design a well-controlled adaptive seamless Bayesian dose-response study. The sample size ( n = 47, for 90% power and 95% confidence) and optimum interims were anticipated for adaptive decision-making about efficacy, safety, and single session dose parameters. Furthermore, preliminary pilot study results were sufficient to show a significant difference (90% power, 99% confidence) within the longitudinally detected self-report tinnitus loudness between before and under positive emotion induction. This study demonstrated a research methodology used to improve emotion regulation in tinnitus patients. In the projected method, positive emotion induction is essential for promoting functional targeting under HD-tDCS anatomical specificity to indicate the efficacy and facilitate the dose-finding process. The continuous updating of prior knowledge about efficacy and dose during the exploratory stage adapts the anticipated dose-response model. Consequently, the effective dose range to make superiority neuromodulation in correcting loudness misperception of tinnitus will be redefined. Highly effective dose adapts the study to a standard randomized trial and transforms it into the confirmatory stage in which active HD-tDCS protocol is compared with a sham trial (placebo-like). Establishing the HD-tDCS intervention protocols relying on this novel method provides reliable evidence for regulatory agencies to approve or reject the efficacy and safety. Furthermore, this paper supports a technical report for designing multimodality data-driven complementary investigations in emotion regulation, including EEG-driven neuro markers, Stroop-driven attention biases, and neuroimaging-driven brain network dynamics., Competing Interests: ADa and CT were employed by the company Soterix Medical Inc. The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2022 Ghodratitoostani, Gonzatto, Vaziri, Delbem, Makkiabadi, Datta, Thomas, Hyppolito, Santos, Louzada and Leite.)
- Published
- 2022
- Full Text
- View/download PDF
21. Agent-based Modeling of Tumor and Immune System Interactions in Combinational Therapy with Low-dose 5-fluorouracil and Dendritic Cell Vaccine in Melanoma B16F10.
- Author
-
Rahbar S, Shafiekhani S, Allahverdi A, Jamali A, Kheshtchin N, Ajami M, Mirsanei Z, Habibi S, Makkiabadi B, Hadjati J, and Jafari AH
- Subjects
- Animals, CD8-Positive T-Lymphocytes, Dendritic Cells, Female, Fluorouracil pharmacology, Fluorouracil therapeutic use, Male, Mice, Mice, Inbred C57BL, Systems Analysis, Tumor Microenvironment, Melanoma
- Abstract
This study is designed to present an agent-based model (ABM) to simulate the interactions between tumor cells and the immune system in the melanoma model. The Myeloid-derived Suppressor Cells (MDSCs) and dendritic cells (DCs) are considered in this model as immunosuppressive and antigen-presenting agents respectively. The animal experiment was performed on 68 B16F10 melanoma tumor-bearing C57BL/6 female mice to collect dynamic data for ABM implementation and validation. Animals were divided into 4 groups; group 1 was control (no treatment) while groups 2 and 3 were treated with DC vaccine and low-dose 5- fluorouracil (5-FU) respectively and group 4 was treated with both DC Vaccine and low-dose of 5-FU. The tumor growth rate, number of MDSC, and presence of CD8+/CD107a+ T cells in the tumor microenvironment were evaluated in each group. Firstly, the tumor cells, the effector immune cells, DCs, and the MDSCs have been considered as the agents of the ABM model and their interaction methods have been extracted from the literature and implemented in the model. Then, the model parameters were estimated by the dynamic data collected from animal experiments. To validate the ABM model, the simulation results were compared with the real data. The results show that the dynamics of the model agents can mimic the relations among considered immune system components to an emergent outcome compatible with real data. The simplicity of the proposed model can help to understand the results of the combinational therapy and make this model a useful tool for studying different scenarios and assessing the combinational results. Determining the role of each component helps to find critical times during tumor progression and change the tumor and immune system balance in favor of the immune system.
- Published
- 2022
- Full Text
- View/download PDF
22. Photoacoustic-MR Image Registration Based on a Co-Sparse Analysis Model to Compensate for Brain Shift.
- Author
-
Farnia P, Makkiabadi B, Alimohamadi M, Najafzadeh E, Basij M, Yan Y, Mehrmohammadi M, and Ahmadian A
- Subjects
- Algorithms, Animals, Mice, Neurosurgical Procedures methods, Phantoms, Imaging, Brain diagnostic imaging, Brain surgery, Magnetic Resonance Imaging methods
- Abstract
Brain shift is an important obstacle to the application of image guidance during neurosurgical interventions. There has been a growing interest in intra-operative imaging to update the image-guided surgery systems. However, due to the innate limitations of the current imaging modalities, accurate brain shift compensation continues to be a challenging task. In this study, the application of intra-operative photoacoustic imaging and registration of the intra-operative photoacoustic with pre-operative MR images are proposed to compensate for brain deformation. Finding a satisfactory registration method is challenging due to the unpredictable nature of brain deformation. In this study, the co-sparse analysis model is proposed for photoacoustic-MR image registration, which can capture the interdependency of the two modalities. The proposed algorithm works based on the minimization of mapping transform via a pair of analysis operators that are learned by the alternating direction method of multipliers. The method was evaluated using an experimental phantom and ex vivo data obtained from a mouse brain. The results of the phantom data show about 63% improvement in target registration error in comparison with the commonly used normalized mutual information method. The results proved that intra-operative photoacoustic images could become a promising tool when the brain shift invalidates pre-operative MRI.
- Published
- 2022
- Full Text
- View/download PDF
23. Wavelet-Based Biphase Analysis of Brain Rhythms in Automated Wake-Sleep Classification.
- Author
-
Mohammadi E, Makkiabadi B, Shamsollahi MB, Reisi P, and Kermani S
- Subjects
- Brain, Electroencephalography, Polysomnography, Sleep, Wavelet Analysis
- Abstract
Many studies in the field of sleep have focused on connectivity and coherence. Still, the nonstationary nature of electroencephalography (EEG) makes many of the previous methods unsuitable for automatic sleep detection. Time-frequency representations and high-order spectra are applied to nonstationary signal analysis and nonlinearity investigation, respectively. Therefore, combining wavelet and bispectrum, wavelet-based bi-phase (Wbiph) was proposed and used as a novel feature for sleep-wake classification. The results of the statistical analysis with emphasis on the importance of the gamma rhythm in sleep detection show that the Wbiph is more potent than coherence in the wake-sleep classification. The Wbiph has not been used in sleep studies before. However, the results and inherent advantages, such as the use of wavelet and bispectrum in its definition, suggest it as an excellent alternative to coherence. In the next part of this paper, a convolutional neural network (CNN) classifier was applied for the sleep-wake classification by Wbiph. The classification accuracy was 97.17% in nonLOSO and 95.48% in LOSO cross-validation, which is the best among previous studies on sleep-wake classification.
- Published
- 2022
- Full Text
- View/download PDF
24. An innovative sit-standing seat in urban buses: A new design to prevent falls and non-collision injuries.
- Author
-
Zakerian SA, Masjoodi S, Makkiabadi B, and Arabian A
- Subjects
- Ergonomics, Humans, Leg physiology, Muscle, Skeletal physiology, Motor Vehicles, Standing Position
- Abstract
Background: Due to the rapid growth of metropolises and the insufficiency of public transportation, nowadays, many people travel on these vehicles in a standing position. This position leads to discomfort and the risk of falling or non-collision incidents for the passengers., Objective: The present study was conducted to analyze an innovative sit-standing seat to prevent falls and non-collision injuries in standing passengers., Methods: A total of sixteen participated in this study. EMG signal and Borg scale were used to assess muscle activity and discomfort, respectively., Results: The mean Borg scale score for perceived discomfort was lower in the sit-standing position than the standing position in all body organs, except for the hips. Also, in the sit-standing position compared to the standing position, the muscle activity of the soleus and medial gastrocnemius muscles was significantly lower in the constant velocity and entire phases in both legs, lower in the right leg in the acceleration phase and lower in the left leg in the deceleration phase., Conclusions: So, this seat can be used as an innovative idea to improve the ergonomic condition of standing passengers to prevent falls and non-collision injuries on transit buses.
- Published
- 2022
- Full Text
- View/download PDF
25. Accurate Automatic Glioma Segmentation in Brain MRI images Based on CapsNet.
- Author
-
Aziz MJ, Amiri Tehrani Zade A, Farnia P, Alimohamadi M, Makkiabadi B, Ahmadian A, and Alirezaie J
- Subjects
- Brain, Humans, Image Processing, Computer-Assisted, Magnetic Resonance Imaging, Neural Networks, Computer, Glioma diagnostic imaging
- Abstract
Glioma is a highly invasive type of brain tumor with an irregular morphology and blurred infiltrative borders that may affect different parts of the brain. Therefore, it is a challenging task to identify the exact boundaries of the tumor in an MR image. In recent years, deep learning-based Convolutional Neural Networks (CNNs) have gained popularity in the field of image processing and have been utilized for accurate image segmentation in medical applications. However, due to the inherent constraints of CNNs, tens of thousands of images are required for training, and collecting and annotating such a large number of images poses a serious challenge for their practical implementation. Here, for the first time, we have optimized a network based on the capsule neural network called SegCaps, to achieve accurate glioma segmentation on MR images. We have compared our results with a similar experiment conducted using the commonly utilized U-Net. Both experiments were performed on the BraTS2020 challenging dataset. For U-Net, network training was performed on the entire dataset, whereas a subset containing only 20% of the whole dataset was used for the SegCaps. To evaluate the results of our proposed method, the Dice Similarity Coefficient (DSC) was used. SegCaps and U-Net reached DSC of 87.96% and 85.56% on glioma tumor core segmentation, respectively. The SegCaps uses convolutional layers as the basic components and has the intrinsic capability to generalize novel viewpoints. The network learns the spatial relationship between features using dynamic routing of capsules. These capabilities of the capsule neural network have led to a 3% improvement in results of glioma segmentation with fewer data while it contains 95.4% fewer parameters than U-Net.
- Published
- 2021
- Full Text
- View/download PDF
26. Developing a Multi-channel Beamformer by Enhancing Spatially Constrained ICA for Recovery of Correlated EEG Sources.
- Author
-
Samadzadehaghdam N, MakkiAbadi B, Eqlimi E, Mohagheghian F, Khajehpoor H, and Harirchian MH
- Abstract
Background: Brain source imaging based on electroencephalogram (EEG) data aims to recover the neuron populations' activity producing the scalp potentials. This procedure is known as the EEG inverse problem. Recently, beamformers have gained a lot of consideration in the EEG inverse problem., Objective: Beamformers lack acceptable performance in the case of correlated brain sources. These sources happen when some regions of the brain have simultaneous or correlated activities such as auditory stimulation or moving left and right extremities of the body at the same time. In this paper, we have developed a multichannel beamformer robust to correlated sources., Material and Methods: In this simulation study, we have looked at the problem of brain source imaging and beamforming from a blind source separation point of view. We focused on the spatially constraint independent component analysis (scICA) algorithm, which generally benefits from the pre-known partial information of mixing matrix, and modified the steps of the algorithm in a way that makes it more robust to correlated sources. We called the modified scICA algorithm Multichannel ICA based EEG Beamformer (MIEB)., Results: We evaluated the proposed algorithm on simulated EEG data and compared its performance quantitatively with three algorithms scICA, linearly-constrained minimum-variance (LCMV) and Dual-Core beamformers; it is considered that the latter is specially designed to reconstruct correlated sources., Conclusion: The MIEB algorithm has much better performance in terms of normalized mean squared error in recovering the correlated/uncorrelated sources both in noise free and noisy synthetic EEG signals. Therefore, it could be used as a robust beamformer in recovering correlated brain sources., (Copyright: © Journal of Biomedical Physics and Engineering.)
- Published
- 2021
- Full Text
- View/download PDF
27. A digital viscoelastic liver phantom for investigation of elastographic measurements.
- Author
-
Pasyar P, Masjoodi S, Montazeriani Z, and Makkiabadi B
- Subjects
- Finite Element Analysis, Liver diagnostic imaging, Phantoms, Imaging, Software, Elasticity Imaging Techniques
- Abstract
To develop elastography imaging technologies and implement image reconstruction algorithms, testing is done with phantoms. Although the validation step is usually taken using real data and physical phantoms, their geometry as well as composition, biomechanical parameters, and details of applying stress cannot be modified readily. Such considerations have gained increasing importance with the growth of elastography techniques as one of the non-invasive medical imaging modalities, which can map the elastic properties and stiffness of soft tissues. In this article, we develop a digital viscoelastic phantom using computed tomography (CT) imaging data and several application software tools based on illustrations of normal liver anatomy so as to investigate the biomechanics of elastography via finite element modeling (FEM). Here we discuss how to create this phantom step by step, demonstrate typical shear wave elastography (SWE) experiments of applying transient stress to the liver model, and calculate quantitative measurements. In particular, shear wave velocities are investigated through a parametric study designed based on tissue stiffness and distance from the applied stress. According to the results of FEM analysis, low errors were obtained for shear wave velocity estimation for both mechanical stress (~2-5%) and acoustic radiation force (~3-7%). Results show that our model is a powerful framework and benchmark for simulating and implementing different algorithms in shear wave elastography, which can serve as a guide for upcoming researches and assist scientists to optimize their subsequent experiments in terms of design., (Copyright © 2020 Elsevier Ltd. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
28. The 2017 and 2018 Iranian Brain-Computer Interface Competitions.
- Author
-
Aghdam NS, Moradi MH, Shamsollahi MB, Nasrabadi AM, Setarehdan SK, Shalchyan V, Faradji F, and Makkiabadi B
- Abstract
This article summarizes the first and second Iranian brain-computer interface competitions held in 2017 and 2018 by the National Brain Mapping Lab. Two 64-channel electroencephalography (EEG) datasets were contributed, including motor imagery as well as motor execution by three limbs. The competitors were asked to classify the type of motor imagination or execution based on EEG signals in the first competition and the type of executed motion as well as the movement onset in the second competition. Here, we provide an overview of the datasets, the tasks, the evaluation criteria, and the methods proposed by the top-ranked teams. We also report the results achieved with the submitted algorithms and discuss the organizational strategies for future campaigns., Competing Interests: There are no conflicts of interest., (Copyright: © 2020 Journal of Medical Signals & Sensors.)
- Published
- 2020
- Full Text
- View/download PDF
29. High-quality photoacoustic image reconstruction based on deep convolutional neural network: towards intra-operative photoacoustic imaging.
- Author
-
Farnia P, Mohammadi M, Najafzadeh E, Alimohamadi M, Makkiabadi B, and Ahmadian A
- Subjects
- Algorithms, Animals, Artifacts, Brain diagnostic imaging, Deep Learning, Diagnostic Imaging, Humans, Mice, Phantoms, Imaging, Signal-To-Noise Ratio, Time Factors, Image Processing, Computer-Assisted methods, Neural Networks, Computer, Photoacoustic Techniques methods
- Abstract
The use of intra-operative imaging system as an intervention solution to provide more accurate localization of complicated structures has become a necessity during the neurosurgery. However, due to the limitations of conventional imaging systems, high-quality real-time intra-operative imaging remains as a challenging problem. Meanwhile, photoacoustic imaging has appeared so promising to provide images of crucial structures such as blood vessels and microvasculature of tumors. To achieve high-quality photoacoustic images of vessels regarding the artifacts caused by the incomplete data, we proposed an approach based on the combination of time-reversal (TR) and deep learning methods. The proposed method applies a TR method in the first layer of the network which is followed by the convolutional neural network with weights adjusted to a set of simulated training data for the other layers to estimate artifact-free photoacoustic images. It was evaluated using a generated synthetic database of vessels. The mean of signal to noise ratio (SNR), peak SNR, structural similarity index, and edge preservation index for the test data were reached 14.6 dB, 35.3 dB, 0.97 and 0.90, respectively. As our results proved, by using the lower number of detectors and consequently the lower data acquisition time, our approach outperforms the TR algorithm in all criteria in a computational time compatible with clinical use.
- Published
- 2020
- Full Text
- View/download PDF
30. Dictionary learning technique enhances signal in LED-based photoacoustic imaging.
- Author
-
Farnia P, Najafzadeh E, Hariri A, Lavasani SN, Makkiabadi B, Ahmadian A, and Jokerst JV
- Abstract
There has been growing interest in low-cost light sources such as light-emitting diodes (LEDs) as an excitation source in photoacoustic imaging. However, LED-based photoacoustic imaging is limited by low signal due to low energy per pulse-the signal is easily buried in noise leading to low quality images. Here, we describe a signal de-noising approach for LED-based photoacoustic signals based on dictionary learning with an alternating direction method of multipliers. This signal enhancement method is then followed by a simple reconstruction approach delay and sum. This approach leads to sparse representation of the main components of the signal. The main improvements of this approach are a 38% higher contrast ratio and a 43% higher axial resolution versus the averaging method but with only 4% of the frames and consequently 49.5% less computational time. This makes it an appropriate option for real-time LED-based photoacoustic imaging., Competing Interests: The authors declare that there are no conflicts of interest related to this article., (© 2020 Optical Society of America under the terms of the OSA Open Access Publishing Agreement.)
- Published
- 2020
- Full Text
- View/download PDF
31. Determination of critical time points in non-collision incidents of elderly passengers in standing position on urban bus.
- Author
-
Arabian A, Masjoodi S, Makkiabadi B, Ghafari E, Torabi Nassaj E, and Zakerian SA
- Subjects
- Acceleration adverse effects, Accidents, Traffic statistics & numerical data, Aged, Deceleration adverse effects, Electromyography, Humans, Iran epidemiology, Male, Time Factors, Urban Population statistics & numerical data, Leg physiology, Motor Vehicles, Muscle, Skeletal physiology, Standing Position, Wounds and Injuries epidemiology
- Abstract
Objective: Due to the reduced physical ability of elderly, the occurrence of non-collision incidents is higher for these passengers in standing position. Therefore, the purpose of the present study is to determine the critical time points of non-collision incidents using the level of leg muscle activity in elderly standing passengers on urban bus. Methods: To determine the critical time points in the occurrence of non-collision incidents, the level of muscular activity of the standing passengers was analyzed using a surface electromyography (surface EMG) device during the movement scenario of the bus. The results of assessing the leg muscle activity was analyzed in SPSS software. Results: The contraction pattern of the leg muscles in standing passengers was consistent with Newton's First Law. The results showed that the level of muscular activity decreased in the right leg muscles when changing the phase of bus motion from acceleration to constant velocity. This level of muscular activity in the left leg muscles increased when constant velocity changed to deceleration. These changes were quite significant in the medial gastrocnemius and soleus muscles (P < 0.05). Conclusions: According to these findings, it was found that the acceleration and deceleration phases, especially the starting and changing phases of bus motion, are the most critical time points in the occurrence of non-collision incidents in elderly standing passengers on urban bus.
- Published
- 2020
- Full Text
- View/download PDF
32. Disrupted resting-state brain functional network in methamphetamine abusers: A brain source space study by EEG.
- Author
-
Khajehpour H, Makkiabadi B, Ekhtiari H, Bakht S, Noroozi A, and Mohagheghian F
- Subjects
- Adult, Amphetamine-Related Disorders metabolism, Anxiety complications, Anxiety pathology, Brain Mapping, Brain Waves, Depression complications, Depression pathology, Female, Humans, Male, Signal Processing, Computer-Assisted, Statistics, Nonparametric, Stress, Psychological, Young Adult, Amphetamine-Related Disorders pathology, Brain physiopathology, Electroencephalography, Rest physiology
- Abstract
This study aimed to examine the effects of chronic methamphetamine use on the topological organization of whole-brain functional connectivity network (FCN) by reconstruction of neural-activity time series at resting-state. The EEG of 36 individuals with methamphetamine use disorder (IWMUD) and 24 normal controls (NCs) were recorded, pre-processed and source-reconstructed using standardized low-resolution tomography (sLORETA). The brain FCNs of participants were constructed and between-group differences in network topological properties were investigated using graph theoretical analysis. IWMUD showed decreased characteristic path length, increased clustering coefficient and small-world index at delta and gamma frequency bands compared to NCs. Moreover, abnormal changes in inter-regional connectivity and network hubs were observed in all the frequency bands. The results suggest that the IWMUD and NCs have distinct FCNs at all the frequency bands, particularly at the delta and gamma bands, in which deviated small-world brain topology was found in IWMUD., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2019
- Full Text
- View/download PDF
33. Computer-Aided Tinnitus Detection based on Brain Network Analysis of EEG Functional Connectivity.
- Author
-
Mohagheghian F, Makkiabadi B, Jalilvand H, Khajehpoor H, Samadzadehaghdam N, Eqlimi E, and Deevband MR
- Abstract
Background: Tinnitus known as a central nervous system disorder is correlated with specific oscillatory activities within auditory and non-auditory brain areas. Several studies in the past few years have revealed that in the most tinnitus cases, the response pattern of neurons in auditory system is changed due to auditory deafferentation, which leads to variation and disruption of the brain networks., Objective: In this paper, we introduce an approach to automatically distinguish tinnitus individuals from healthy controls based on whole-brain functional connectivity and network analysis., Material and Methods: The functional connectivity analysis was applied to the resting state electroencephalographic (EEG) data of both groups using Weighted Phase Lag Index (WPLI) for various frequency bands in 2-44 Hz frequency range. In this case- control study, the classification was performed on graph theoretical measures using support vector machine (SVM) as a robust classification method., Results: Experimental results showed promising classification performance with a high accuracy, sensitivity, and specificity in all frequency bands, specifically in the beta2 frequency band., Conclusion: The current study provides substantial evidence that tinnitus network can be successfully detected by consistent measures of the brain networks based on EEG functional connectivity., (Copyright: © Shiraz University of Medical Sciences.)
- Published
- 2019
- Full Text
- View/download PDF
34. Computer-aided classifying and characterizing of methamphetamine use disorder using resting-state EEG.
- Author
-
Khajehpour H, Mohagheghian F, Ekhtiari H, Makkiabadi B, Jafari AH, Eqlimi E, and Harirchian MH
- Abstract
Methamphetamine (meth) is potently addictive and is closely linked to high crime rates in the world. Since meth withdrawal is very painful and difficult, most abusers relapse to abuse in traditional treatments. Therefore, developing accurate data-driven methods based on brain functional connectivity could be helpful in classifying and characterizing the neural features of meth dependence to optimize the treatments. Accordingly, in this study, computation of functional connectivity using resting-state EEG was used to classify meth dependence. Firstly, brain functional connectivity networks (FCNs) of 36 meth dependent individuals and 24 normal controls were constructed by weighted phase lag index, in six frequency bands: delta (1-4 Hz), theta (4-8 Hz), alpha (8-15 Hz), beta (15-30 Hz), gamma (30-45 Hz) and wideband (1-45 Hz).Then, significant differences in graph metrics and connectivity values of the FCNs were used to distinguish the two groups. Support vector machine classifier had the best performance with 93% accuracy, 100% sensitivity, 83% specificity and 0.94 F-score for differentiating between MDIs and NCs. The best performance yielded when selected features were the combination of connectivity values and graph metrics in the beta frequency band., Competing Interests: Conflict of interestThe authors declare that they have no conflict of interest., (© Springer Nature B.V. 2019.)
- Published
- 2019
- Full Text
- View/download PDF
35. Image improvement in linear-array photoacoustic imaging using high resolution coherence factor weighting technique.
- Author
-
Mozaffarzadeh M, Makkiabadi B, Basij M, and Mehrmohammadi M
- Abstract
Background: In Photoacoustic imaging (PAI), the most prevalent beamforming algorithm is delay-and-sum (DAS) due to its simple implementation. However, it results in a low quality image affected by the high level of sidelobes. Coherence factor (CF) can be used to address the sidelobes in the reconstructed images by DAS, but the resolution improvement is not good enough, compared to the high resolution beamformers such as minimum variance (MV). In this paper, it is proposed to use high-resolution-CF (HRCF) weighting technique in which MV is used instead of the existing DAS in the formula of the conventional CF., Results: The higher performance of HRCF is proved numerically and experimentally. The quantitative results obtained with the simulations show that at the depth of 40 mm , in comparison with DAS+CF and MV+CF, HRCF improves the full-width-half-maximum of about 91% and 15% and the signal-to-noise ratio about 40% and 14%, respectively., Conclusion: Proposed method provides a high resolution along with a low level of sidelobes for PAI., Competing Interests: Competing interestsThe authors declare that they have no competing interests., (© The Author(s) 2019.)
- Published
- 2019
- Full Text
- View/download PDF
36. Manipulation of Human Verticality Using High-Definition Transcranial Direct Current Stimulation.
- Author
-
Santos TEG, Favoretto DB, Toostani IG, Nascimento DC, Rimoli BP, Bergonzoni E, Lemos TW, Truong DQ, Delbem ACB, Makkiabadi B, Moraes R, Louzada F, Bikson M, Leite JP, and Edwards DJ
- Abstract
Background: Using conventional tDCS over the temporo-parietal junction (TPJ) we previously reported that it is possible to manipulate subjective visual vertical (SVV) and postural control. We also demonstrated that high-definition tDCS (HD-tDCS) can achieve substantially greater cortical stimulation focality than conventional tDCS. However, it is critical to establish dose-response effects using well-defined protocols with relevance to clinically meaningful applications. Objective: To conduct three pilot studies investigating polarity and intensity-dependent effects of HD-tDCS over the right TPJ on behavioral and physiological outcome measures in healthy subjects. We additionally aimed to establish the feasibility, safety, and tolerability of this stimulation protocol. Methods: We designed three separate randomized, double-blind, crossover phase I clinical trials in different cohorts of healthy adults using the same stimulation protocol. The primary outcome measure for trial 1 was SVV; trial 2, weight-bearing asymmetry (WBA); and trial 3, electroencephalography power spectral density (EEG-PSD). The HD-tDCS montage comprised a single central, and 3 surround electrodes (HD-tDCS3x1) over the right TPJ. For each study, we tested 3x2 min HD-tDCS3x1 at 1, 2 and 3 mA; with anode center, cathode center, or sham stimulation, in random order across days. Results: We found significant SVV deviation relative to baseline, specific to the cathode center condition, with consistent direction and increasing with stimulation intensity. We further showed significant WBA with direction governed by stimulation polarity (cathode center, left asymmetry; anode center, right asymmetry). EEG-PSD in the gamma band was significantly increased at 3 mA under the cathode. Conclusions: The present series of studies provide converging evidence for focal neuromodulation that can modify physiology and have behavioral consequences with clinical potential.
- Published
- 2018
- Full Text
- View/download PDF
37. Co-Sparse Analysis Model Based Image Registration to Compensate Brain Shift by Using Intra-Operative Ultrasound Imaging.
- Author
-
Farnia P, Najafzadeh E, Ahmadian A, Makkiabadi B, Alimohamadi M, and Alirezaie J
- Subjects
- Algorithms, Humans, Magnetic Resonance Imaging methods, Multimodal Imaging methods, Neurosurgical Procedures methods, Brain diagnostic imaging, Monitoring, Intraoperative, Ultrasonography methods
- Abstract
Notwithstanding the widespread use of image guided neurosurgery systems in recent years, the accuracy of these systems is strongly limited by the intra-operative deformation of the brain tissue, the so-called brain shift. Intra-operative ultrasound (iUS) imaging as an effective solution to compensate complex brain shift phenomena update patients coordinate during surgery by registration of the intra-operative ultrasound and the pre-operative MRI data that is a challenging problem.In this work a non-rigid multimodal image registration technique based on co-sparse analysis model is proposed. This model captures the interdependency of two image modalities; MRI as an intensity image and iUS as a depth image. Based on this model, the transformation between the two modalities is minimized by using a bimodal pair of analysis operators which are learned by optimizing a joint co-sparsity function using a conjugate gradient.Experimental validation of our algorithm confirms that our registration approach outperforms several of other state-of-the-art registration methods quantitatively. The evaluation was performed using seven patient dataset with the mean registration error of only 1.83 mm. Our intensity-based co-sparse analysis model has improved the accuracy of non-rigid multimodal medical image registration by 15.37% compared to the curvelet based residual complexity as a powerful registration method, in a computational time compatible with clinical use.
- Published
- 2018
- Full Text
- View/download PDF
38. Efficient nonlinear beamformer based on P'th root of detected signals for linear-array photoacoustic tomography: application to sentinel lymph node imaging.
- Author
-
Mozaffarzadeh M, Periyasamy V, Pramanik M, and Makkiabadi B
- Subjects
- Algorithms, Animals, Models, Theoretical, Phantoms, Imaging, Rats, Signal-To-Noise Ratio, Transducers, Image Processing, Computer-Assisted methods, Photoacoustic Techniques, Sentinel Lymph Node diagnostic imaging, Ultrasonography
- Abstract
In linear-array transducer-based photoacoustic (PA) imaging, B-scan PA images are formed using the raw channel PA signals. Delay-and-sum (DAS) is the most prevalent algorithm due to its simple implementation, but it leads to low-quality images. Delay-multiply-and-sum (DMAS) provides a higher image quality in comparison with DAS while it imposes a computational burden of O ( M2 ) . We introduce a nonlinear (NL) beamformer for linear-array PA imaging, which uses the p'th root of the detected signals and imposes the complexity of DAS [O ( M ) ]. The proposed algorithm is evaluated numerically and experimentally [wire-target and in-vivo sentinel lymph node (SLN) imaging], and the effects of the parameter p are investigated. The results show that the NL algorithm, using a root of p (NL_p), leads to lower sidelobes and higher signal-to-noise ratio compared with DAS and DMAS, for (p > 2). The sidelobes level (for the wire-target phantom), at the depth of 11.4 mm, are about -31, -52, -52, -67, -88, and -109 dB, for DAS, DMAS, NL_2, NL_3, NL_4, and NL_5, respectively, indicating the superiority of the NL_p algorithm. In addition, the best value of p for SLN imaging is reported to be 12., ((2018) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE).)
- Published
- 2018
- Full Text
- View/download PDF
39. Use of Sine Shaped High-Frequency Rhythmic Visual Stimuli Patterns for SSVEP Response Analysis and Fatigue Rate Evaluation in Normal Subjects.
- Author
-
Keihani A, Shirzhiyan Z, Farahi M, Shamsi E, Mahnam A, Makkiabadi B, Haidari MR, and Jafari AH
- Abstract
Background: Recent EEG-SSVEP signal based BCI studies have used high frequency square pulse visual stimuli to reduce subjective fatigue. However, the effect of total harmonic distortion (THD) has not been considered. Compared to CRT and LCD monitors, LED screen displays high-frequency wave with better refresh rate. In this study, we present high frequency sine wave simple and rhythmic patterns with low THD rate by LED to analyze SSVEP responses and evaluate subjective fatigue in normal subjects. Materials and Methods: We used patterns of 3-sequence high-frequency sine waves (25, 30, and 35 Hz) to design our visual stimuli. Nine stimuli patterns, 3 simple (repetition of each of above 3 frequencies e.g., P25-25-25) and 6 rhythmic (all of the frequencies in 6 different sequences e.g., P25-30-35) were chosen. A hardware setup with low THD rate (<0.1%) was designed to present these patterns on LED. Twenty two normal subjects (aged 23-30 (25 ± 2.1) yrs) were enrolled. Visual analog scale (VAS) was used for subjective fatigue evaluation after presentation of each stimulus pattern. PSD, CCA, and LASSO methods were employed to analyze SSVEP responses. The data including SSVEP features and fatigue rate for different visual stimuli patterns were statistically evaluated. Results: All 9 visual stimuli patterns elicited SSVEP responses. Overall, obtained accuracy rates were 88.35% for PSD and > 90% for CCA and LASSO (for TWs > 1 s). High frequency rhythmic patterns group with low THD rate showed higher accuracy rate (99.24%) than simple patterns group (98.48%). Repeated measure ANOVA showed significant difference between rhythmic pattern features ( P < 0.0005). Overall, there was no significant difference between the VAS of rhythmic [3.85 ± 2.13] compared to the simple patterns group [3.96 ± 2.21], ( P = 0.63). Rhythmic group had lower within group VAS variation (min = P25-30-35 [2.90 ± 2.45], max = P35-25-30 [4.81 ± 2.65]) as well as least individual pattern VAS (P25-30-35). Discussion and Conclusion: Overall, rhythmic and simple pattern groups had higher and similar accuracy rates. Rhythmic stimuli patterns showed insignificantly lower fatigue rate than simple patterns. We conclude that both rhythmic and simple visual high frequency sine wave stimuli require further research for human subject SSVEP-BCI studies.
- Published
- 2018
- Full Text
- View/download PDF
40. Enhanced linear-array photoacoustic beamforming using modified coherence factor.
- Author
-
Mozaffarzadeh M, Yan Y, Mehrmohammadi M, and Makkiabadi B
- Subjects
- Algorithms, Computer Simulation, Phantoms, Imaging, Signal-To-Noise Ratio, Image Processing, Computer-Assisted methods, Photoacoustic Techniques methods, Signal Processing, Computer-Assisted
- Abstract
Photoacoustic imaging (PAI) is a promising medical imaging modality providing the spatial resolution of ultrasound imaging and the contrast of optical imaging. For linear-array PAI, a beamformer can be used as the reconstruction algorithm. Delay-and-sum (DAS) is the most prevalent beamforming algorithm in PAI. However, using DAS beamformer leads to low-resolution images as well as high sidelobes due to nondesired contribution of off-axis signals. Coherence factor (CF) is a weighting method in which each pixel of the reconstructed image is weighted, based on the spatial spectrum of the aperture, to mainly improve the contrast. We demonstrate that the numerator of the formula of CF contains a DAS algebra and propose the use of a delay-multiply-and-sum beamformer instead of the available DAS on the numerator. The proposed weighting technique, modified CF (MCF), has been evaluated numerically and experimentally compared to CF. It was shown that MCF leads to lower sidelobes and better detectable targets. The quantitative results of the experiment (using wire targets) show that MCF leads to for about 45% and 40% improvement, in comparison with CF, in the terms of signal-to-noise ratio and full-width-half-maximum, respectively., ((2018) COPYRIGHT Society of Photo-Optical Instrumentation Engineers (SPIE).)
- Published
- 2018
- Full Text
- View/download PDF
41. Curvelet based residual complexity objective function for non-rigid registration of pre-operative MRI with intra-operative ultrasound images.
- Author
-
Farnia P, Makkiabadi B, Ahmadian A, and Alirezaie J
- Subjects
- Algorithms, Brain Neoplasms surgery, Humans, Multimodal Imaging, Perioperative Period, Preoperative Period, Brain diagnostic imaging, Brain Neoplasms diagnostic imaging, Magnetic Resonance Imaging, Ultrasonography
- Abstract
Intra-operative ultrasound as an imaging based method has been recognized as an effective solution to compensate non rigid brain shift problem in recent years. Measuring brain shift requires registration of the pre-operative MRI images with the intra-operative ultrasound images which is a challenging task. In this study a novel hybrid method based on the matching echogenic structures such as sulci and tumor boundary in MRI with ultrasound images is proposed. The matching echogenic structures are achieved by optimizing the Residual Complexity (RC) in the curvelet domain. At the first step, the probabilistic map of the MR image is achieved and the residual image as the difference between this probabilistic map and intra-operative ultrasound is obtained. Then curvelet transform as a sparse function is used to minimize the complexity of residual image. The proposed method is a compromise between feature-based and intensity-based approaches. Evaluation was performed using 14 patients data set and the mean of registration error reached to 1.87 mm. This hybrid method based on RC improves accuracy of nonrigid multimodal image registration by 12.5% in a computational time compatible with clinical use.
- Published
- 2016
- Full Text
- View/download PDF
42. Evaluation of adaptive PARAFAC alogorithms for tracking of simulated moving brain sources.
- Author
-
Fotouhi A, Eqlimi E, and Makkiabadi B
- Subjects
- Brain Mapping methods, Databases, Factual, Electroencephalography methods, Factor Analysis, Statistical, Humans, Least-Squares Analysis, Models, Theoretical, Algorithms, Brain physiology
- Abstract
In this paper, we proposed an online 2D localization method for tracking of dynamic moving brain sources. For this purpose, we used an adaptive version of PARAllel FACtor (PARAFAC) analysis for factorization of electroencephalographic (EEG) signals. We utilized Boundary Element Method (BEM) with four layers to solve the forward problem for the simulated EEG signals caused by two moving dipoles within the brain. Then, we created an appropriate tensor built by second order statistics of EEG signals. We adopted an online method to brain source localization called the Recursive Least Squares Tracking (RLST) as an adaptive PARAFAC algorithm with two windowing schemes. Finally, we evaluated the performance of the method applied to EEG signals.
- Published
- 2015
- Full Text
- View/download PDF
43. A new spatially constrained NMF with application to fMRI.
- Author
-
Ferdowsi S, Abolghasemi V, Makkiabadi B, and Sanei S
- Subjects
- Humans, Reproducibility of Results, Sensitivity and Specificity, Algorithms, Brain physiology, Brain Mapping methods, Image Interpretation, Computer-Assisted methods, Magnetic Resonance Imaging methods
- Abstract
In this paper the problem of BOLD detection is addressed. The focus here is on non-negative matrix factorization (NMF), which is a data driven method and able to provide part-based representation of data. A new constrained optimization problem is proposed for the purpose of BOLD detection. The proposed constraint imposes some prior spatial information of active area inside the brain, on the decomposition process. The constraint is built up based on the type of stimulus and available physiological knowledge of the brain performance. The simulation results on both synthetic and real fMRI data show that applying the proposed constraint improves the BOLD detection performance.
- Published
- 2011
- Full Text
- View/download PDF
44. A new spatiotemporal filtering method for single-trial estimation of correlated ERP subcomponents.
- Author
-
Jarchi D, Sanei S, Principe JC, and Makkiabadi B
- Subjects
- Brain physiology, Computer Simulation, Humans, Principal Component Analysis, Algorithms, Electroencephalography methods, Evoked Potentials physiology, Signal Processing, Computer-Assisted
- Abstract
A novel spatiotemporal filtering method for single trial estimation of event-related potential (ERP) subcomponents is proposed here. Unlike some previous works in ERP estimation [1], , the proposed method is able to estimate temporally correlated ERP subcomponents such as P3a and P3b. A new cost function is, therefore, defined which can deflate one of the correlated subcomponents. The method is applied to both simulated and real data and has shown to perform very well even in low signal-to-noise ratio situations. In addition, the method is compared to spatial principal component analysis and its superiority has been confirmed by using simulated signals. The approach can be especially useful in mental fatigue analysis where the relative variability of P300 subcomponents is the key factor in detecting the level of fatigue.
- Published
- 2011
- Full Text
- View/download PDF
45. Blind separation and localization of correlated P300 subcomponents from single trial recordings using extended PARAFAC2 tensor model.
- Author
-
Makkiabadi B, Jarchi D, and Sanei S
- Subjects
- Algorithms, Brain pathology, Computer Simulation, Electroencephalography methods, Evoked Potentials, Humans, Models, Statistical, Models, Theoretical, Principal Component Analysis, Reproducibility of Results, Signal-To-Noise Ratio, Time Factors, Event-Related Potentials, P300, Signal Processing, Computer-Assisted
- Abstract
A novel mathematical model based on multi-way data construction and analysis with the goal of simultaneously separating and localizing the brain sources specially the subcomponents of event related potentials (ERPs) is introduced. We represent multi-channel EEG data using a third-order tensor with modes: space (channels), time samples, and number of segments. Then, a multi-way technique, in particular, generalized version of PARAFAC2 method, is developed to blindly separate and localize mutually/temporally correlated P3a and P3b sources as subcomponents of P300 signal. In this paper the non-orthogonality of the ERP subcomponents is defined within the tensor model. In order to obtain essentially unique estimation of the signal components one parametric and one structural constraint are defined and imposed. The method is applied to both simulated and real data and has been shown to perform very well even in low signal to noise ratio situations. In addition, the method is compared with spatial principal component analysis (sPCA) and its superiority is demonstrated by using simulated signals.
- Published
- 2011
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.