201 results on '"Maguin, E."'
Search Results
2. Development of Microbiome Biobanks – Challenges and Opportunities
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Ryan, M.J., Schloter, M., Berg, G., Kostic, T., Kinkel, L.L., Eversole, K., Macklin, J.A., Schelkle, B., Kazou, M., Sarand, I., Singh, B.K., Fischer, D., Maguin, E., Ferrocino, I., Lima, N., McClure, R.S., Charles, T.C., de Souza, R.S.C., Kiran, G.S., Krug, H.L., Taffner, J., Roume, H., Selvin, J., Smith, D., Rybakova, D., and Sessitsch, A.
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- 2021
- Full Text
- View/download PDF
3. Mucosal-associated invariant T cells promote inflammation and intestinal dysbiosis leading to metabolic dysfunction during obesity
- Author
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Toubal, A, Kiaf, B, Beaudoin, L, Cagninacci, L, Rhimi, M, Fruchet, B, da Silva, J, Corbett, AJ, Simoni, Y, Lantz, O, Rossjohn, J, McCluskey, J, Lesnik, P, Maguin, E, Lehuen, A, Toubal, A, Kiaf, B, Beaudoin, L, Cagninacci, L, Rhimi, M, Fruchet, B, da Silva, J, Corbett, AJ, Simoni, Y, Lantz, O, Rossjohn, J, McCluskey, J, Lesnik, P, Maguin, E, and Lehuen, A
- Abstract
Obesity is associated with low-grade chronic inflammation promoting insulin-resistance and diabetes. Gut microbiota dysbiosis is a consequence as well as a driver of obesity and diabetes. Mucosal-associated invariant T cells (MAIT) are innate-like T cells expressing a semi-invariant T cell receptor restricted to the non-classical MHC class I molecule MR1 presenting bacterial ligands. Here we show that during obesity MAIT cells promote inflammation in both adipose tissue and ileum, leading to insulin resistance and impaired glucose and lipid metabolism. MAIT cells act in adipose tissue by inducing M1 macrophage polarization in an MR1-dependent manner and in the gut by inducing microbiota dysbiosis and loss of gut integrity. Both MAIT cell-induced tissue alterations contribute to metabolic dysfunction. Treatment with MAIT cell inhibitory ligand demonstrates its potential as a strategy against inflammation, dysbiosis and metabolic disorders.
- Published
- 2020
4. AGMIAL: implementing an annotation strategy for prokaryote genomes as a distributed system
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Bryson, K., Loux, V., Bossy, R., Nicolas, P., Chaillou, S., van de Guchte, M., Penaud, S., Maguin, E., Hoebeke, M., Bessières, P., and Gibrat, J-F
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- 2006
5. Characterization of urease genes cluster of Streptococcus thermophilus
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Mora, D., Maguin, E., Masiero, M., Parini, C., Ricci, G., Manachini, P. L., and Daffonchio, D.
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- 2004
6. Production of growth-inhibiting factors by Lactobacillus delbrueckii
- Author
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van de Guchte, M., Ehrlich, S.D., and Maguin, E.
- Published
- 2001
7. The critical role of urease in yogurt fermentation with various combinations of Streptococcus thermophilus and Lactobacillus delbrueckii ssp. bulgaricus
- Author
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Yamauchi, R., primary, Maguin, E., additional, Horiuchi, H., additional, Hosokawa, M., additional, and Sasaki, Y., additional
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- 2019
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8. Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
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Nielsen, H.B., Almeida, M., Sierakowska Juncker, A., Rasmussen, S., Li, J., Sunagawa, S., Plichta, D.R., Gautier, L., Pedersen, A.G., Le Chatelier, E., Pelletier, E., Bonde, I., Nielsen, T., Manichanh, C., Arumugam, M., Batto, J.M., Quintanilha dos Santos, M.B., Blom, N., Borruel, N., Burgdorf, K.S., Boumezbeur, F., Casellas, F., Doré, J., Dworzynski, P., Guarner, F., Hansen, T., Hildebrand, F., Kaas, R.S., Kennedy, S., Kristiansen, K., Kultima, J.R., Leonard, P., Levenez, F., Lund, O., Moumen, B., Le Paslier, D., Pons, N., Pedersen, O., Prifti, E., Qin, J., Raes, J., Sørensen, S., Tap, J., Tims, S., Ussery, D.W., Yamada, T., Jamet, A., Mérieux, A., Cultrone, A., Torrejon, A., Quinquis, B., Brechot, C., Delorme, C., M'Rini, C., de Vos, W.M., Maguin, E., Varela, E., Guedon, E., Gwen, F., Haimet, F., Artiguenave, F., Vandemeulebrouck, G., Denariaz, G., Khaci, G., Blottière, H., Knol, J., Weissenbach, J., van Hylckama Vlieg, J.E., Torben, J., Parkhil, J., Turner, K., van de Guchte, M., Antolin, M., Rescigno, M., Kleerebezem, M., Derrien, M., Galleron, N., Sanchez, N., Grarup, N., Veiga, P., Oozeer, R., Dervyn, R., Layec, S., Bruls, T., Winogradski, Y., Zoetendal, E.G., Renault, D., Sicheritz-Ponten, Bork, P., Wang, J., Brunak, S., Ehrlich, S.D., Center for Biological Sequence Analysis, Technical University of Denmark [Lyngby] (DTU), Novo Nordisk Foundation Center for Biosustainability, MICrobiologie de l'ALImentation au Service de la Santé (MICALIS), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Department of Computer Science [Baltimore], Johns Hopkins University (JHU), BGI Hong Kong Researche Institute, BGI Shenzhen, School of Bioscience and Biotechnology, Southern University of Science and Technology [Shenzhen] (SUSTech), European Molecular Biology Laboratory, US 1367 MetaGénoPolis, Institut National de la Recherche Agronomique (INRA)-Département Microbiologie et Chaîne Alimentaire (MICA), Institut National de la Recherche Agronomique (INRA)-MetaGénoPolis (MGP), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay, Université d'Évry-Val-d'Essonne (UEVE), Novo Nordisk Foundation Center for Basic Metabolic Research (CBMR), Faculty of Health and Medical Sciences, University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU), Digestive System Research Unit, Vall d'Hebron University Hospital [Barcelona], Faculty of Health Sciences, University of Southern Denmark (SDU), Department of Structural Biology, Flanders Institute for Biotechnology, Department of Bioscience Engineering, Vrije Universiteit [Brussels] (VUB), 8National Food Institute - Division for Epidemiology and Microbial Genomics, Department of Biology [Copenhagen], Faculty of Science [Copenhagen], Hagedorn Research Institute, Faculty of Health, Aarhus University [Aarhus], BGI Hong Kong research Institute, Rega Institute - Department of Microbiology and Immunology, Université Catholique de Louvain (UCL), VIB Center for the Biology of Disease, Section of Microbiology [Copenhagen], University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU)-Faculty of Science [Copenhagen], Laboratory of Microbiology, Wageningen University and Research Centre [Wageningen] (WUR), Department of Biological Information, Tokyo Institute of Technology [Tokyo] (TITECH), Max-Delbrück Center for Molecular Medicine, Princess Al Jawhara Center of Excellence in the Research of Hereditary Disorders, King Abdulaziz University, Centre for Host-Microbiome Interactions, Dental Institute Central Office, Guy’s Hospital, King‘s College London, Département Microbiologie et Chaîne Alimentaire (MICA), Institut National de la Recherche Agronomique (INRA), European Community's Seventh Framework Programme [FP7-HEALTH-F4-2007-201052, FP7-HEALTH-2010-261376], OpenGPU FUI collaborative research projects, DGCIS, Instituto de Salud Carlos III (Spain), Ministere de la Recherche et de l'Education Nationale (France), [ANR-11-DPBS-0001], Danmarks Tekniske Universitet = Technical University of Denmark (DTU), Beijing Genomics Institute [Shenzhen] (BGI), Southern University of Science and Technology (SUSTech), MetaGenoPolis, Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), University of Copenhagen = Københavns Universitet (UCPH)-University of Copenhagen = Københavns Universitet (UCPH), Vrije Universiteit Brussel (VUB), Université Catholique de Louvain = Catholic University of Louvain (UCL), University of Copenhagen = Københavns Universitet (UCPH)-University of Copenhagen = Københavns Universitet (UCPH)-Faculty of Science [Copenhagen], Wageningen University and Research [Wageningen] (WUR), Max Delbrück Center for Molecular Medicine [Berlin] (MDC), Helmholtz-Gemeinschaft = Helmholtz Association, European Project: 201052,EC:FP7:HEALTH,FP7-HEALTH-2007-A,METAHIT(2008), Department of Systems Biology, Center for Biological Sequence Analysis, Ctr Biol Sequence Anal, National University of Singapore (NUS), European Molecular Biology Laboratory [Heidelberg] (EMBL), Department of Mathematics and Computer Science [Odense] (IMADA), Génomique métabolique (UMR 8030), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), Vall d’Hebron Research Institute (VHIR), Faculty of Health and Medical Sciences, The Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen = Københavns Universitet (KU), INRA US1367 MetaGenoPolis, European Molecular Biology Laboratory [Grenoble] (EMBL), Unité de Recherche sur les Maladies Cardiovasculaires, du Métabolisme et de la Nutrition = Institute of cardiometabolism and nutrition (ICAN), Université Pierre et Marie Curie - Paris 6 (UPMC)-Assistance publique - Hôpitaux de Paris (AP-HP) (APHP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-CHU Pitié-Salpêtrière [APHP], Center for Biological Sequence Analysis [Lyngby], Chinese Academy of Agricultural Mechanization Sciences (CCCME), 1Génétique Microbienne, INRA, Domaine de Vilvert, 78352 Jouy en Josas Cedex, and Department of Bio-engineering Sciences
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Cellular immunity ,polypeptide ,[SDV]Life Sciences [q-bio] ,SHORT READ ALIGNMENT SEQUENCES SYSTEMS ALGORITHMS MICROBIOTA PROTEIN LIFE SETS TREE TOOL ,complex metagenomic sample ,Applied Microbiology and Biotechnology ,Genome ,Microbiologie ,Databases, Genetic ,genetic element ,Cluster Analysis ,sets ,short read alignment ,ComputingMilieux_MISCELLANEOUS ,Genetics ,0303 health sciences ,tool ,metagenomic ,tree ,Lactococcus lactis ,IL-12 ,Molecular Medicine ,Biotechnology ,life ,Microbial Genomes ,antigen specific immune response ,Biomedical Engineering ,Bioengineering ,Computational biology ,[SDV.BID]Life Sciences [q-bio]/Biodiversity ,cellular immunity ,Biology ,algorithms ,Microbiology ,03 medical and health sciences ,Genetic variation ,microbiota ,Microbiome ,Gene ,genome ,030304 developmental biology ,adjuvant activity ,VLAG ,030306 microbiology ,Metagenomics ,WIAS ,Microbial genetics ,sequences ,systems ,protein - Abstract
Most current approaches for analyzing metagenomic data rely on comparisons to reference genomes, but the microbial diversity of many environments extends far beyond what is covered by reference databases. De novo segregation of complex metagenomic data into specific biological entities, such as particular bacterial strains or viruses, remains a largely unsolved problem. Here we present a method, based on binning co-abundant genes across a series of metagenomic samples, that enables comprehensive discovery of new microbial organisms, viruses and co-inherited genetic entities and aids assembly of microbial genomes without the need for reference sequences. We demonstrate the method on data from 396 human gut microbiome samples and identify 7,381 co-abundance gene groups (CAGs), including 741 metagenomic species (MGS). We use these to assemble 238 high-quality microbial genomes and identify affiliations between MGS and hundreds of viruses or genetic entities. Our method provides the means for comprehensive profiling of the diversity within complex metagenomic samples.
- Published
- 2014
9. Effet d’extraits de cannelle et de marc de raisin riches en polyphénols sur le métabolisme, le microbiote intestinal et la barrière intestinale de la souris
- Author
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Van Hul, M., primary, Geurts, L., additional, Plovier, H., additional, Druart, C., additional, Everard, A., additional, Ståhlman, M., additional, Rhimi, M., additional, Chira, K., additional, Teissedre, P.-L., additional, Delzenne, N.M., additional, Maguin, E., additional, Guilbot, A., additional, Brochot, A., additional, Gérard, P., additional, Bäckhed, F., additional, and Cani, P.D., additional
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- 2018
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10. Induction of heavy-metal-transporting CPX-type ATPases during acid adaptation in Lactobacillus bulgaricus
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Penaud, S., Fernandez, A., Boudebbouze, S., Ehrlich, S.D., Maguin, E., and van de Guchte, M.
- Subjects
Lactobacillus -- Physiological aspects ,Lactobacillus -- Genetic aspects ,Adenosine triphosphatase -- Physiological aspects ,Biological sciences - Abstract
Reverse transcription and real-time quantitative PCR and mapped transcription start sites are used to analyze the transport system during acid adaptation in Lactobacillus bulgaricus. The results have suggested that acidification of the culture medium have affected copper homeostasis and cell viability in Lactobacillus bulgaricus.
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- 2006
11. P1016 The pig’s other genome: A reference gene catalog of the gut microbiome as a new resource for deep studies of the interplay between the host and its microbiome
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Xiao, L., primary, Estellé, J., additional, Kiilerich, P., additional, Ramayo-Caldas, Y., additional, Xia, Z., additional, Feng, Q., additional, Pedersen, A. Ø., additional, Kjeldsen, N. J., additional, Maguin, E., additional, Doré, J., additional, Pons, N., additional, le Chatelier, E., additional, Madsen, L., additional, Wang, J., additional, Ehrlich, S. D., additional, Kristiansen, K., additional, and Rogel-Gaillard, C., additional
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- 2016
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12. Enterotypes of the human gut microbiome
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Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, Takuji, Mende, D. R., Fernandes, G. R., Tap, J., Bruls, T., Batto, J. M., Bertalan, M., Borruel, N., Casellas, F., Fernandez, L., Gautier, L., Hansen, T., Hattori, M., Hayashi, T., Kleerebezem, M., Kurokawa, K., Leclerc, M., Levenez, F., Manichanh, C., Nielsen, H. B., Nielsen, T., Pons, N., Poulain, J., Qin, J., Sicheritz-Ponten, T., Tims, S., Torrents, D., Ugarte, E., Zoetendal, E. G., Wang, J., Guarner, F., Pedersen, O., de Vos, W. M., Brunak, S., Dor�, J., Antol匤, M., Artiguenave, F., Blottiere, H. M., Almeida, M., Brechot, C., Cara, C., Chervaux, C., Cultrone, A., Delorme, C., Denariaz, G., Dervyn, R., Foerstner, K. U., Friss, C., van de Guchte, M., Guedon, E., Haimet, F., Huber, W., van Hylckama-Vlieg, J., Jamet, A., Juste, C., Kaci, G., Knol, J., Lakhdari, O., Layec, S., Le Roux, K., Maguin, E., M駻ieux, A., Melo Minardi, R., M'rini, C., Muller, J., Oozeer, R., Parkhill, J., Renault, P., Rescigno, M., Sanchez, N., Sunagawa, S., Torrejon, A., Turner, K., Vandemeulebrouck, G., Varela, E., Winogradsky, Y., Zeller, G., Weissenbach, J., Ehrlich, S. D., Bork, P., Consortium, MetaHIT, Microbiota Interaction with Human and Animal (MIHA), MICrobiologie de l'ALImentation au Service de la Santé (MICALIS), Institut National de la Recherche Agronomique (INRA)-AgroParisTech-Institut National de la Recherche Agronomique (INRA)-AgroParisTech, AgroParisTech-Université Paris-Saclay-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), European Molecular Biology Laboratory [Heidelberg] (EMBL), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Center for Biological Sequence Analysis [Lyngby], Technical University of Denmark [Lyngby] (DTU), Digestive System Research Unit, Vall d'Hebron University Hospital [Barcelona], Barcelona Supercomputing Center - Centro Nacional de Supercomputacion (BSC - CNS), Centre Interlangues - Texte, Image, Langage (TIL), Université de Bourgogne (UB), Hagedorn Research Institute, Faculty of Health Sciences, University of Southern Denmark (SDU), NIZO [Ede, Netherlands], Institut National de la Recherche Agronomique (INRA), Génomique métabolique (UMR 8030), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS), Beijing Genomics Institute [Shenzhen] (BGI), Laboratory of Microbiology, Wageningen University and Research [Wageningen] (WUR), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Lundbeck Foundation Centre for Applied Medical Genomics in Personalized Disease Prediction, Prevention and Care (LuCAMP), Novo Nordisk Foundation, International Science and Technology Cooperation Project in China [0806], Agence Nationale de la Recherche (ANR), Institute for the encouragement of Scientific Research and Innovation of Brussels (ISRIB), Fund for Scientific Research Flanders (FWO), European Project: 201052,EC:FP7:HEALTH,FP7-HEALTH-2007-A,METAHIT(2008), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay, NIZO FOOD RESEARCH (NIZO), Nizo food research, Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE), Wageningen University and Research Centre [Wageningen] (WUR), Danmarks Tekniske Universitet = Technical University of Denmark (DTU), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), and Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS)
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Male ,intestinal microbiota ,catalog ,obesity ,[SDV]Life Sciences [q-bio] ,pathways ,Biodiversity ,Biology ,Microbiology ,Article ,diversity ,03 medical and health sciences ,Feces ,Human gut ,mucin ,Phylogenetics ,Microbiologie ,Humans ,bacterial ,Microbiome ,genes ,Phylogeny ,030304 developmental biology ,VLAG ,2. Zero hunger ,0303 health sciences ,metagenomics ,Multidisciplinary ,Bacteria ,colon ,030306 microbiology ,Host (biology) ,Ecology ,[SDV.MHEP.HEG]Life Sciences [q-bio]/Human health and pathology/Hépatology and Gastroenterology ,Bacterial Typing Techniques ,Europe ,Intestines ,[SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology ,Evolutionary biology ,Metagenomics ,Metagenome ,Enterotype ,Biological Markers ,Female ,Biomarkers ,Human Microbiome Project - Abstract
International audience; Our knowledge of species and functional composition of the human gut microbiome is rapidly increasing, but it is still based on very few cohorts and little is known about variation across the world. By combining 22 newly sequenced faecal metagenomes of individuals from four countries with previously published data sets, here we identify three robust clusters (referred to as enterotypes hereafter) that are not nation or continent specific. We also confirmed the enterotypes in two published, larger cohorts, indicating that intestinal microbiota variation is generally stratified, not continuous. This indicates further the existence of a limited number of well-balanced host-microbial symbiotic states that might respond differently to diet and drug intake. The enterotypes are mostly driven by species composition, but abundant molecular functions are not necessarily provided by abundant species, highlighting the importance of a functional analysis to understand microbial communities. Although individual host properties such as body mass index, age, or gender cannot explain the observed enterotypes, data-driven marker genes or functional modules can be identified for each of these host properties. For example, twelve genes significantly correlate with age and three functional modules with the body mass index, hinting at a diagnostic potential of microbial markers.
- Published
- 2011
13. Refining the Evidence-Based Practice Attitude Scale: An Alternative Confirmatory Factor Analysis
- Author
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Wolf, D. A. P. S., primary, Dulmus, C. N., additional, Maguin, E., additional, and Fava, N., additional
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- 2014
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14. Discovering lactic acid bacteria by genomics
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Klaenhammer, T, Altermann, E, Arigoni, F, Bolotin, A, Breidt, F, Broadbent, J, Cano, R, Chaillou, S, Deutscher, J, Gasson, M, van de Guchte, M, Guzzo, J, Hartke, A, Hawkins, T, Hols, P, Hutkins, R, Kleerebezem, M, Kok, J, Kuipers, O, Maguin, E, McKay, L, Mills, D, Nauta, A, Overbeek, R, Pel, H, Pridmore, D, Saier, M, van Sinderen, D, Sorokin, A, Steele, J, O'Sullivan, D, de Vos, W, Weimer, B, Zagorec, M, Siezen, R, and Molecular Genetics
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OENI TEMPERATE BACTERIOPHAGE-PHI-10MC ,food ,16S RIBOSOMAL-RNA ,Propionibacterium ,Streptococcus ,health ,Gram-positive bacteria ,STREPTOCOCCUS-THERMOPHILUS ,OENOCOCCUS-OENI ,lactic acid bacteria ,Lactobacillus ,Lactococcus ,genomics ,FIELD GEL-ELECTROPHORESIS ,Brevibacterium ,LEUCONOSTOC-OENOS ,EFFICIENT INSERTIONAL MUTAGENESIS ,Pediococcus ,Bifidobacterium ,LACTOCOCCUS-LACTIS ,Leuconostoc ,Oenococcus ,LACTOBACILLUS-ACIDOPHILUS GROUP ,BREVIBACTERIUM-LINENS - Abstract
This review summarizes a collection of lactic acid bacteria that are now undergoing genomic sequencing and analysis. Summaries are presented on twenty different species, with each overview discussing the organisms fundamental and practical significance, environmental habitat, and its role in fermentation, bioprocessing, or probiotics. For those projects where genome sequence data were available by March 2002, summaries include a listing of key statistics and interesting genomic features. These efforts will revolutionize our molecular view of Gram-positive bacteria, as up to 15 genomes from the low GC content lactic acid bacteria are expected to be available in the public domain by the end of 2003. Our collective view of the lactic acid bacteria will be fundamentally changed as we rediscover the relationships and capabilities of these organisms through genomics.
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- 2002
15. Exploring the effects of age of alcohol use initiation and psychosocial risk factors on subsequent alcohol misuse.
- Author
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Hawkins, J D, primary, Graham, J W, additional, Maguin, E, additional, Abbott, R, additional, Hill, K G, additional, and Catalano, R F, additional
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- 1997
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16. Efficient insertional mutagenesis in lactococci and other gram-positive bacteria
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Maguin, E, primary, Prévost, H, additional, Ehrlich, S D, additional, and Gruss, A, additional
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- 1996
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17. Construction of food-grade mutants of lactic acid bacteria
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Maguin, E., primary, Prévost, H., additional, and Gruss, A., additional
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- 1996
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18. A 7-base-pair sequence protects DNA from exonucleolytic degradation in Lactococcus lactis.
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Biswas, I, primary, Maguin, E, additional, Ehrlich, S D, additional, and Gruss, A, additional
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- 1995
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19. High-efficiency gene inactivation and replacement system for gram-positive bacteria
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Biswas, I, primary, Gruss, A, additional, Ehrlich, S D, additional, and Maguin, E, additional
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- 1993
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20. Efficient system for genetic modification of lactic bacteria: construction of food grade strains
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Biswas, I., primary, Duwat, P., additional, Ehrlich, S. D., additional, Gruss, A., additional, Hege, T., additional, Langella, P., additional, Le Loir, Y., additional, and Maguin, E., additional
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- 1993
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21. New thermosensitive plasmid for gram-positive bacteria
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Maguin, E, primary, Duwat, P, additional, Hege, T, additional, Ehrlich, D, additional, and Gruss, A, additional
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- 1992
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22. An exploratory study of the nature of family resilience in families affected by parental alcohol abuse.
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Coyle JP, Mochajski T, Maguin E, Safyer A, DeWit D, and Macdonald S
- Abstract
Resilient families are able to adapt to adversities, but the nature of family resilience is not well understood. This study examines patterns of family functioning that may protect families from the negative impact of alcohol abuse. Naturally occurring patterns of family functioning are identified and associations between these patterns and parenting, current parental alcohol use, recent family stressful events, supportive relationships outside the family, and demographic characteristics are assessed. Cross-sectional data are analyzed from racially diverse American and Canadian families (N = 674) who have at least one parent with an alcohol abuse problem and a child between ages 9 and 12 years. Cluster analyses derived from family functioning indicators are used to identify naturally occurring family patterns. Multivariate assessments evaluated relationships between family functioning clusters and potentially influencing factors. The study results reveal a continuum of family functioning associated with parenting, child's perception of teacher caring, and race. [ABSTRACT FROM AUTHOR]
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- 2009
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23. Developmental risk factors for youth violence
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Herrenkohl, T. I., Maguin, E., Hill, K. G., Hawkins, J. D., Abbott, R. D., and Catalano, R. F.
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- 2000
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24. Prevalence and Severity of Lifetime Physical and Sexual Victimization Among Incarcerated Women - Comparisons and implications for treatment
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Browne, A., Miller, B., and Maguin, E.
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- 1999
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25. Reversibility of SOS-associated division inhibition in Escherichia coli
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Maguin, E, Lutkenhaus, J, and D'Ari, R
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In Escherichia coli the SOS response, induced by DNA-damaging treatments, includes two systems of cell division inhibition, SfiA and SfiC, which are thought to prevent cell division by interacting with the division protein FtsZ. It is shown here that SfiA-mediated division inhibition is readily reversible, even in the absence of de novo protein synthesis, suggesting that functional FtsZ molecules can be recovered from SfiA-FtsZ complexes. The action of SfiC, on the other hand, is essentially irreversible; induction by expression of the recA (Tif) mutation for 60 min results in division inhibition that continues for at least 180 min after the end of the induction period. An excess of the presumed target molecule FtsZ, furnished by a multicopy plasmid, suppresses the action of SfiA but not SfiC. Simultaneous induction of SfiA and SfiC results in irreversible division inhibition, showing that SfiC is epistatic to SfiA. The irreversibility of SfiC action is most readily accounted for by assuming that the SfiC product, unlike SfiA, is stable. The reversibility of SfiA action is slower in a lon mutant, in which the SfiA protein is partially stabilized. From the kinetics of division resumption in the absence of protein synthesis, we estimated the in vivo half-life of the SfiA protein to be 10 min in a lon+ strain and 170 min in a lon mutant.
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- 1986
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26. SOS-associated division inhibition gene sfiC is part of excisable element e14 in Escherichia coli
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Maguin, E, primary, Brody, H, additional, Hill, C W, additional, and D'Ari, R, additional
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- 1986
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27. Microbiome innovations for a sustainable future
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D’Hondt, K, Kostic, T, McDowell, Richard, Eudes, F, Singh, BK, Sarkar, S, Markakis, M, Schelkle, B, Maguin, E, and Sessitsch, A
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- 2021
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28. Examining the healthy human microbiome concept.
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Joos R, Boucher K, Lavelle A, Arumugam M, Blaser MJ, Claesson MJ, Clarke G, Cotter PD, De Sordi L, Dominguez-Bello MG, Dutilh BE, Ehrlich SD, Ghosh TS, Hill C, Junot C, Lahti L, Lawley TD, Licht TR, Maguin E, Makhalanyane TP, Marchesi JR, Matthijnssens J, Raes J, Ravel J, Salonen A, Scanlan PD, Shkoporov A, Stanton C, Thiele I, Tolstoy I, Walter J, Yang B, Yutin N, Zhernakova A, Zwart H, Doré J, and Ross RP
- Abstract
Human microbiomes are essential to health throughout the lifespan and are increasingly recognized and studied for their roles in metabolic, immunological and neurological processes. Although the full complexity of these microbial communities is not fully understood, their clinical and industrial exploitation is well advanced and expanding, needing greater oversight guided by a consensus from the research community. One of the most controversial issues in microbiome research is the definition of a 'healthy' human microbiome. This concept is complicated by the microbial variability over different spatial and temporal scales along with the challenge of applying a unified definition to the spectrum of healthy microbiome configurations. In this Perspective, we examine the progress made and the key gaps that remain to be addressed to fully harness the benefits of the human microbiome. We propose a road map to expand our knowledge of the microbiome-health relationship, incorporating epidemiological approaches informed by the unique ecological characteristics of these communities., (© 2024. Springer Nature Limited.)
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- 2024
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29. Concepts and criteria defining emerging microbiome applications.
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Kostic T, Schloter M, Arruda P, Berg G, Charles TC, Cotter PD, Kiran GS, Lange L, Maguin E, Meisner A, van Overbeek L, Sanz Y, Sarand I, Selvin J, Tsakalidou E, Smidt H, Wagner M, and Sessitsch A
- Subjects
- Humans, Animals, Microbiota
- Abstract
In recent years, microbiomes and their potential applications for human, animal or plant health, food production and environmental management came into the spotlight of major national and international policies and strategies. This has been accompanied by substantial R&D investments in both public and private sectors, with an increasing number of products entering the market. Despite widespread agreement on the potential of microbiomes and their uses across disciplines, stakeholders and countries, there is no consensus on what defines a microbiome application. This often results in non-comprehensive communication or insufficient documentation making commercialisation and acceptance of the novel products challenging. To showcase the complexity of this issue we discuss two selected, well-established applications and propose criteria defining a microbiome application and their conditions of use for clear communication, facilitating suitable regulatory frameworks and building trust among stakeholders., (© 2024 The Author(s). Microbial Biotechnology published by John Wiley & Sons Ltd.)
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- 2024
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30. Gut microbiota in cats with inflammatory bowel disease and low-grade intestinal T-cell lymphoma.
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Drut A, Mkaouar H, Kriaa A, Mariaule V, Akermi N, Méric T, Sénécat O, Maguin E, Hernandez J, and Rhimi M
- Abstract
In cats and humans, several physiological and environmental factors have been shown to alter the gut microbiota of healthy individuals. Cats share several diseases with humans such as inflammatory bowel diseases and low-grade intestinal T-cell lymphoma. The physiopathology of these chronic enteropathies is poorly understood but may involve disequilibrium of the gut microbiota composition and disruption of normal microbiome activity profiles. These disorders are increasingly diagnosed in the feline species due to improved medicalization and easier access to endoscopy in veterinary practice. This review addresses the current data on the gut microbiota of cats in health and in chronic enteropathies. Such functional analysis will help the advancement of innovative diagnostic tools and targeted therapeutic strategies., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Drut, Mkaouar, Kriaa, Mariaule, Akermi, Méric, Sénécat, Maguin, Hernandez and Rhimi.)
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- 2024
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31. Design of a proteolytic module for improved metabolic modeling of Bacteroides caccae .
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Paulay A, Grimaud GM, Caballero R, Laroche B, Leclerc M, Labarthe S, and Maguin E
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- Humans, Proteolysis, Peptide Hydrolases metabolism, Bacteria genetics, Fatty Acids, Volatile metabolism, Bacteroides
- Abstract
The gut microbiota plays a crucial role in health and is significantly modulated by human diets. In addition to Western diets which are rich in proteins, high-protein diets are used for specific populations or indications, mainly weight loss. In this study, we investigated the effect of protein supplementation on Bacteroides caccae , a Gram-negative gut symbiont. The supplementation with whey proteins led to a significant increase in growth rate, final biomass, and short-chain fatty acids production. A comprehensive genomic analysis revealed that B. caccae possesses a set of 156 proteases with putative intracellular and extracellular localization and allowed to identify amino acid transporters and metabolic pathways. We developed a fully curated genome-scale metabolic model of B. caccae that incorporated its proteolytic activity and simulated its growth and production of fermentation-related metabolites in response to the different growth media. We validated the model by comparing the predicted phenotype to experimental data. The model accurately predicted B. caccae 's growth and metabolite production ( R
2 = 0.92 for the training set and R2 = 0.89 for the validation set). We found that accounting for both ATP consumption related to proteolysis, and whey protein accessibility is necessary for accurate predictions of metabolites production. These results provide insights into B. caccae 's adaptation to a high-protein diet and its ability to utilize proteins as a source of nutrition. The proposed model provides a useful tool for understanding the feeding mechanism of B. caccae in the gut microbiome.IMPORTANCEMicrobial proteolysis is understudied despite the availability of dietary proteins for the gut microbiota. Here, the proteolytic potential of the gut symbiont Bacteroides caccae was analyzed for the first time using pan-genomics. This sketches a well-equipped bacteria for protein breakdown, capable of producing 156 different proteases with a broad spectrum of cleavage targets. This functional potential was confirmed by the enhancement of growth and metabolic activities at high protein levels. Proteolysis was included in a B. caccae metabolic model which was fitted with the experiments and validated on external data. This model pinpoints the links between protein availability and short-chain fatty acids production, and the importance for B. caccae to gain access to glutamate and asparagine to promote growth. This integrated approach can be generalized to other symbionts and upscaled to complex microbiota to get insights into the ecological impact of proteins on the gut microbiota., Competing Interests: The authors declare no conflict of interest.- Published
- 2024
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32. A preliminary randomized trial of reinforcement contingencies to improve compliance with ecological momentary assessment.
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Gass JC, Tonkin S, Maguin E, Colder CR, Mahoney MC, Tiffany ST, and Hawk LW Jr
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- Humans, Longitudinal Studies, Ecological Momentary Assessment
- Abstract
Ecological Momentary Assessment (EMA) methods are increasingly used by translational scientists to study real-world behavior and experience. The ability to draw meaningful conclusions from EMA research depends upon participant compliance with assessment completion. Most EMA studies provide financial compensation for compliance, but little empirical evidence addresses the impact of reinforcement parameters on the level of compliance. The purpose of this study-within-a-trial was to determine the effects of varying the amount and frequency of reinforcement on EMA compliance in a clinical sample of individuals seeking treatment for cigarette smoking. In the parent clinical trial, participants were asked to complete 9 weeks of EMA (1 daily Morning Assessment and 4 daily Random Assessments). Following a 5-week Standard Payment phase for EMA compliance, 61 individuals seeking treatment for cigarette smoking enrolled in the larger clinical trial were randomized to receive Standard ($1 per assessment, paid biweekly), Frequent ($1 per assessment, paid 3 times per week), or Large ($2 per assessment, paid biweekly) payments for EMA compliance during a 4-week Payment Manipulation Phase. Overall, receiving Frequent or Large payments did not improve EMA compliance compared to Standard payments, Ps > .30. Varying frequency and amount of remuneration for EMA compliance did not generally improve compliance in an ongoing clinical trial, raising further questions about the importance of reinforcement parameters in promoting EMA compliance., (© Society of Behavioral Medicine 2023. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
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- 2024
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33. From animal models to gut-on-chip: the challenging journey to capture inter-individual variability in chronic digestive disorders.
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Kriaa A, Mariaule V, De Rudder C, Jablaoui A, Sokol H, Wilmes P, Maguin E, and Rhimi M
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- Animals, Humans, Models, Animal, Host Microbial Interactions, Dysbiosis, Gastrointestinal Microbiome, Microbiota
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Chronic digestive disorders are of increasing incidence worldwide with expensive treatments and no available cure. Available therapeutic schemes mainly rely on symptom relief, with large degrees of variability in patients' response to such treatments, underlining the need for new therapeutic strategies. There are strong indications that the gut microbiota's contribution seems to be a key modulator of disease activity and patients' treatment responses. Hence, efforts have been devoted to understanding host-microbe interactions and the mechanisms underpinning such variability. Animal models, being the gold standard, provide valuable mechanistic insights into host-microbe interactions. However, they are not exempt from limitations prompting the development of alternative methods. Emerging microfluidic technologies and gut-on-chip models were shown to mirror the main features of gut physiology and disease state, reflect microbiota modification, and include functional readouts for studying host responses. In this commentary, we discuss the relevance of animal models in understanding host-microbe interactions and how gut-on-chip technology holds promises for addressing patient variability in responses to chronic digestive disease treatment.
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- 2024
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34. A randomized controlled trial of a team science intervention to enhance collaboration readiness and behavior among early career scholars in the Clinical and Translational Science Award network.
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Hawk LW Jr, Murphy TF, Hartmann KE, Burnett A, and Maguin E
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Introduction: Despite the central importance of cross-disciplinary collaboration in the Clinical and Translational Science Award (CTSA) network and the implementation of various programs designed to enhance collaboration, rigorous evidence for the efficacy of these approaches is lacking. We conducted a novel randomized controlled trial (RCT; ClinicalTrials.gov identifier: NCT05395286) of a promising approach to enhance collaboration readiness and behavior among 95 early career scholars from throughout the CTSA network., Methods: Participants were randomly assigned (within two cohorts) to participate in an Innovation Lab, a week-long immersive collaboration experience, or to a treatment-as-usual control group. Primary outcomes were change in metrics of self-reported collaboration readiness (through 12-month follow-up) and objective collaboration network size from bibliometrics (through 21 months); secondary outcomes included self-reported number of grants submitted and, among Innovation Lab participants only, reactions to the Lab experience (through 12 months)., Results: Short-term reactions from Innovation Lab participants were quite positive, and controlled evidence for a beneficial impact of Innovation Labs over the control condition was observed in the self-reported number of grant proposals in the intent-to-treat sample. Primary measures of collaboration readiness were near ceiling in both groups, limiting the ability to detect enhancement. Collaboration network size increased over time to a comparable degree in both groups., Conclusions: The findings highlight the need for systematic intervention development research to identify efficacious strategies that can be implemented throughout the CTSA network to better support the goal of enhanced cross-disciplinary collaboration., Competing Interests: Andy Burnett is an employee of KnowInnovation, Inc., which facilitated the training events described in this manuscript., (© The Author(s) 2023.)
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- 2023
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35. Serine proteases and metalloproteases are highly increased in irritable bowel syndrome Tunisian patients.
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Soussou S, Jablaoui A, Mariaule V, Kriaa A, Boudaya H, Wysocka M, Amouri A, Gargouri A, Lesner A, Maguin E, and Rhimi M
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- Humans, Serine Proteases, Endopeptidases, Metalloproteases, Pancreatic Elastase, Feces, Irritable Bowel Syndrome
- Abstract
Serine proteases are involved in many biological processes and are associated with irritable bowel syndrome (IBS) pathology. An increase in serine protease activity has been widely reported in IBS patients. While most of the studies focused on host proteases, the contribution of microbial proteases are poorly studied. In the present study, we report the analysis of proteolytic activities in fecal samples from the first Tunisian cohort of IBS-M patients and healthy individuals. We demonstrated, for the first time, that metalloproteases activities were fourfold higher in fecal samples of IBS patients compared to controls. Of interest, the functional characterization of serine protease activities revealed a 50-fold increase in trypsin-like activities and a threefold in both elastase- and cathepsin G-like activities. Remarkably, we also showed a fourfold increase in proteinase 3-like activity in the case of IBS. This study also provides insight into the alteration of gut microbiota and its potential role in proteolytic modulation in IBS. Our results stressed the impact of the disequilibrium of serine proteases, metalloproteases and gut microbiota in IBS and the need of the further characterization of these targets to set out new therapeutic approaches., (© 2023. Springer Nature Limited.)
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- 2023
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36. Microbiome Interconnectedness throughout Environments with Major Consequences for Healthy People and a Healthy Planet.
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Sessitsch A, Wakelin S, Schloter M, Maguin E, Cernava T, Champomier-Verges MC, Charles TC, Cotter PD, Ferrocino I, Kriaa A, Lebre P, Cowan D, Lange L, Kiran S, Markiewicz L, Meisner A, Olivares M, Sarand I, Schelkle B, Selvin J, Smidt H, van Overbeek L, Berg G, Cocolin L, Sanz Y, Fernandes WL Jr, Liu SJ, Ryan M, Singh B, and Kostic T
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- Animals, Humans, Soil Microbiology, Soil, Water, Planets, Microbiota physiology
- Abstract
Microbiomes have highly important roles for ecosystem functioning and carry out key functions that support planetary health, including nutrient cycling, climate regulation, and water filtration. Microbiomes are also intimately associated with complex multicellular organisms such as humans, other animals, plants, and insects and perform crucial roles for the health of their hosts. Although we are starting to understand that microbiomes in different systems are interconnected, there is still a poor understanding of microbiome transfer and connectivity. In this review we show how microbiomes are connected within and transferred between different habitats and discuss the functional consequences of these connections. Microbiome transfer occurs between and within abiotic (e.g., air, soil, and water) and biotic environments, and can either be mediated through different vectors (e.g., insects or food) or direct interactions. Such transfer processes may also include the transmission of pathogens or antibiotic resistance genes. However, here, we highlight the fact that microbiome transmission can have positive effects on planetary and human health, where transmitted microorganisms potentially providing novel functions may be important for the adaptation of ecosystems., Competing Interests: The authors declare no conflict of interest.
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- 2023
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37. Evaluating Declines in Compliance With Ecological Momentary Assessment in Longitudinal Health Behavior Research: Analyses From a Clinical Trial.
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Tonkin S, Gass J, Wray J, Maguin E, Mahoney M, Colder C, Tiffany S, and Hawk LW Jr
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- Adult, Humans, Black or African American statistics & numerical data, Smartphone, White statistics & numerical data, United States epidemiology, Ecological Momentary Assessment, Health Behavior ethnology, Smoking Cessation methods
- Abstract
Background: Ecological momentary assessment (EMA) is increasingly used to evaluate behavioral health processes over extended time periods. The validity of EMA for providing representative, real-world data with high temporal precision is threatened to the extent that EMA compliance drops over time., Objective: This research builds on prior short-term studies by evaluating the time course of EMA compliance over 9 weeks and examines predictors of weekly compliance rates among cigarette-using adults., Methods: A total of 257 daily cigarette-using adults participating in a randomized controlled trial for smoking cessation completed daily smartphone EMA assessments, including 1 scheduled morning assessment and 4 random assessments per day. Weekly EMA compliance was calculated and multilevel modeling assessed the rate of change in compliance over the 9-week assessment period. Participant and study characteristics were examined as predictors of overall compliance and changes in compliance rates over time., Results: Compliance was higher for scheduled morning assessments (86%) than for random assessments (58%) at the beginning of the EMA period (P<.001). EMA compliance declined linearly across weeks, and the rate of decline was greater for morning assessments (2% per week) than for random assessments (1% per week; P<.001). Declines in compliance were stronger for younger participants (P<.001), participants who were employed full-time (P=.03), and participants who subsequently dropped out of the study (P<.001). Overall compliance was higher among White participants compared to Black or African American participants (P=.001)., Conclusions: This study suggests that EMA compliance declines linearly but modestly across lengthy EMA protocols. In general, these data support the validity of EMA for tracking health behavior and hypothesized treatment mechanisms over the course of several months. Future work should target improving compliance among subgroups of participants and investigate the extent to which rapid declines in EMA compliance might prove useful for triggering interventions to prevent study dropout., Trial Registration: ClinicalTrials.gov NCT03262662; https://clinicaltrials.gov/ct2/show/NCT03262662., (©Sarah Tonkin, Julie Gass, Jennifer Wray, Eugene Maguin, Martin Mahoney, Craig Colder, Stephen Tiffany, Larry W Hawk Jr. Originally published in the Journal of Medical Internet Research (https://www.jmir.org), 22.06.2023.)
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- 2023
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38. Characterization of Two Parabacteroides distasonis Candidate Strains as New Live Biotherapeutics against Obesity.
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Cuffaro B, Boutillier D, Desramaut J, Jablaoui A, Werkmeister E, Trottein F, Waligora-Dupriet AJ, Rhimi M, Maguin E, and Grangette C
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- Animals, Mice, Bacteroidetes, Adipose Tissue metabolism, Obesity therapy, Obesity metabolism, Gastrointestinal Microbiome
- Abstract
The gut microbiota is now considered as a key player in the development of metabolic dysfunction. Therefore, targeting gut microbiota dysbiosis has emerged as a new therapeutic strategy, notably through the use of live gut microbiota-derived biotherapeutics. We previously highlighted the anti-inflammatory abilities of two Parabacteroides distasonis strains. We herein evaluate their potential anti-obesity abilities and show that the two strains induced the secretion of the incretin glucagon-like peptide 1 in vitro and limited weight gain and adiposity in obese mice. These beneficial effects are associated with reduced inflammation in adipose tissue and the improvement of lipid and bile acid metabolism markers. P. distasonis supplementation also modified the Actinomycetota , Bacillota and Bacteroidota taxa of the mice gut microbiota. These results provide better insight into the capacity of P. distasonis to positively influence host metabolism and to be used as novel source of live biotherapeutics in the treatment and prevention of metabolic-related diseases.
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- 2023
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39. The need for an integrated multi-OMICs approach in microbiome science in the food system.
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Ferrocino I, Rantsiou K, McClure R, Kostic T, de Souza RSC, Lange L, FitzGerald J, Kriaa A, Cotter P, Maguin E, Schelkle B, Schloter M, Berg G, Sessitsch A, and Cocolin L
- Subjects
- Humans, Multiomics, Metabolomics methods, Metagenomics methods, Artificial Intelligence, Microbiota
- Abstract
Microbiome science as an interdisciplinary research field has evolved rapidly over the past two decades, becoming a popular topic not only in the scientific community and among the general public, but also in the food industry due to the growing demand for microbiome-based technologies that provide added-value solutions. Microbiome research has expanded in the context of food systems, strongly driven by methodological advances in different -omics fields that leverage our understanding of microbial diversity and function. However, managing and integrating different complex -omics layers are still challenging. Within the Coordinated Support Action MicrobiomeSupport (https://www.microbiomesupport.eu/), a project supported by the European Commission, the workshop "Metagenomics, Metaproteomics and Metabolomics: the need for data integration in microbiome research" gathered 70 participants from different microbiome research fields relevant to food systems, to discuss challenges in microbiome research and to promote a switch from microbiome-based descriptive studies to functional studies, elucidating the biology and interactive roles of microbiomes in food systems. A combination of technologies is proposed. This will reduce the biases resulting from each individual technology and result in a more comprehensive view of the biological system as a whole. Although combinations of different datasets are still rare, advanced bioinformatics tools and artificial intelligence approaches can contribute to understanding, prediction, and management of the microbiome, thereby providing the basis for the improvement of food quality and safety., (© 2023 The Authors. Comprehensive Reviews in Food Science and Food Safety published by Wiley Periodicals LLC on behalf of Institute of Food Technologists.)
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- 2023
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40. The Nexus of Diet, Gut Microbiota and Inflammatory Bowel Diseases in Dogs.
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Rhimi S, Kriaa A, Mariaule V, Saidi A, Drut A, Jablaoui A, Akermi N, Maguin E, Hernandez J, and Rhimi M
- Abstract
Canine inflammatory bowel diseases (IBD) are of increasing interest in veterinary medicine. They refer to complex and debilitating conditions of dogs' gastrointestinal tract. Although little evidence for causal inferences is currently available, it is believed that IBD pathophysiology entails intricate interactions between environmental factors, the intestinal immune system, and the microbial communities that colonize the gut. To better understand the mechanisms underlying these disorders, leveraging factors associated with the development of these diseases is imperative. Of these factors, emerging evidence supports the role of dietary patterns as key players influencing the composition and function of gut microbes, with subsequent effects on health and disease. In this review, we particularly focus on addressing IBD in dogs and discuss how specific nutrients may elicit or relieve gut inflammation. Gaining mechanistic insights into such interplay and the underpinning mechanisms is key to inferring dietary recommendations, and setting up new and promising therapeutics.
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- 2022
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41. A Psychometric Evaluation of the Stanford Expectations of Treatment Scale (SETS) in the Context of a Smoking Cessation Trial.
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Ferkin AC, Tonkin SS, Maguin E, Mahoney MC, Colder CR, Tiffany ST, and Hawk LW
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- Adult, Humans, Psychometrics, Reproducibility of Results, Motivation, Varenicline therapeutic use, Smoking Cessation methods
- Abstract
Introduction: Although treatment outcome expectancies (TOEs) may influence clinical outcomes, TOEs are rarely reported in the smoking cessation literature, in part because of the lack of validated measures. Therefore, we conducted a psychometric evaluation of TOEs scores with the Stanford Expectations of Treatment Scale (SETS) in the context of a smoking cessation clinical trial., Methods: Participants were 320 adults enrolled in a randomized controlled trial of extended versus standard pre-quit varenicline treatment for smoking cessation (clinicaltrials.gov ID: NCT03262662). Across an 8-week treatment period, we examined the nature and stability of the factor structure using confirmatory factor analysis (CFA), evaluated discriminant validity by examining correlations with abstinence self-efficacy and positive/negative affect (PA/NA), and assessed internal consistency and test-retest reliability of SETS scores., Results: CFAs supported a 2-factor structure that was stable (ie, invariant) across weeks. Positive and negative TOEs were each reflected in three-item subscales that exhibited acceptable to excellent internal consistency (Cronbach's alphas ≥ .77). Positive and negative TOEs were modestly correlated with PA and NA (all |rs| <.27, p < .05). Positive TOEs, but not negative TOEs, were moderately correlated with abstinence self-efficacy (rs = .45 to .61, p < .01). Both positive and negative TOEs scores demonstrated moderate test-retest reliability between assessments (rs = .54 to .72)., Conclusions: SETS scores generally reflect a valid and reliable assessment of positive and negative TOEs in a sample of adults enrolled in a smoking cessation trial. The SETS appears to be a reasonable option for assessing TOEs in future smoking treatment studies., Implications: Assessments of treatment outcome expectancies are rarely reported in the smoking cessation literature. The present results support the validity and reliability of the SETS scores among adults seeking treatment for their smoking behavior., (© The Author(s) 2022. Published by Oxford University Press on behalf of the Society for Research on Nicotine and Tobacco. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
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- 2022
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42. Microbiome ethics, guiding principles for microbiome research, use and knowledge management.
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Lange L, Berg G, Cernava T, Champomier-Vergès MC, Charles T, Cocolin L, Cotter P, D'Hondt K, Kostic T, Maguin E, Makhalanyane T, Meisner A, Ryan M, Kiran GS, de Souza RS, Sanz Y, Schloter M, Smidt H, Wakelin S, and Sessitsch A
- Abstract
The overarching biological impact of microbiomes on their hosts, and more generally their environment, reflects the co-evolution of a mutualistic symbiosis, generating fitness for both. Knowledge of microbiomes, their systemic role, interactions, and impact grows exponentially. When a research field of importance for planetary health evolves so rapidly, it is essential to consider it from an ethical holistic perspective. However, to date, the topic of microbiome ethics has received relatively little attention considering its importance. Here, ethical analysis of microbiome research, innovation, use, and potential impact is structured around the four cornerstone principles of ethics: Do Good; Don't Harm; Respect; Act Justly. This simple, but not simplistic approach allows ethical issues to be communicative and operational. The essence of the paper is captured in a set of eleven microbiome ethics recommendations, e.g., proposing gut microbiome status as common global heritage, similar to the internationally agreed status of major food crops., (© 2022. The Author(s).)
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- 2022
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43. Microbiome Research as an Effective Driver of Success Stories in Agrifood Systems - A Selection of Case Studies.
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Olmo R, Wetzels SU, Armanhi JSL, Arruda P, Berg G, Cernava T, Cotter PD, Araujo SC, de Souza RSC, Ferrocino I, Frisvad JC, Georgalaki M, Hansen HH, Kazou M, Kiran GS, Kostic T, Krauss-Etschmann S, Kriaa A, Lange L, Maguin E, Mitter B, Nielsen MO, Olivares M, Quijada NM, Romaní-Pérez M, Sanz Y, Schloter M, Schmitt-Kopplin P, Seaton SC, Selvin J, Sessitsch A, Wang M, Zwirzitz B, Selberherr E, and Wagner M
- Abstract
Increasing knowledge of the microbiome has led to significant advancements in the agrifood system. Case studies based on microbiome applications have been reported worldwide and, in this review, we have selected 14 success stories that showcase the importance of microbiome research in advancing the agrifood system. The selected case studies describe products, methodologies, applications, tools, and processes that created an economic and societal impact. Additionally, they cover a broad range of fields within the agrifood chain: the management of diseases and putative pathogens; the use of microorganism as soil fertilizers and plant strengtheners; the investigation of the microbial dynamics occurring during food fermentation; the presence of microorganisms and/or genes associated with hazards for animal and human health (e.g., mycotoxins, spoilage agents, or pathogens) in feeds, foods, and their processing environments; applications to improve HACCP systems; and the identification of novel probiotics and prebiotics to improve the animal gut microbiome or to prevent chronic non-communicable diseases in humans (e.g., obesity complications). The microbiomes of soil, plants, and animals are pivotal for ensuring human and environmental health and this review highlights the impact that microbiome applications have with this regard., Competing Interests: At the time of writing, SS was employed by Indigo Ag. RdS and JA was employed by Symbiomics Microbiome Solutions. YS had a patent on a Bifidobacterium strain for obesity licensed (WO2012/076739A1). AS and BM had a patent on the plant-endophyte combinations and uses therefor (US9364005B2). The remaining authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. The handling editor BM declared a shared affiliation with the authors MO, MR-P, and YS at the time of review., (Copyright © 2022 Olmo, Wetzels, Armanhi, Arruda, Berg, Cernava, Cotter, Araujo, de Souza, Ferrocino, Frisvad, Georgalaki, Hansen, Kazou, Kiran, Kostic, Krauss-Etschmann, Kriaa, Lange, Maguin, Mitter, Nielsen, Olivares, Quijada, Romaní-Pérez, Sanz, Schloter, Schmitt-Kopplin, Seaton, Selvin, Sessitsch, Wang, Zwirzitz, Selberherr and Wagner.)
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- 2022
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44. Domestic Environment and Gut Microbiota: Lessons from Pet Dogs.
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Hernandez J, Rhimi S, Kriaa A, Mariaule V, Boudaya H, Drut A, Jablaoui A, Mkaouar H, Saidi A, Biourge V, Borgi MA, Rhimi M, and Maguin E
- Abstract
Accumulating data show the involvement of intestinal microbiota in the development and maintenance of numerous diseases. Many environmental factors influence the composition and function of the gut microbiota. An animal model subjected to the same environmental constraints that will allow better characterization of the microbiota-host dialogue is awaited. The domestic dog has physiological, dietary and pathological characteristics similar to those of humans and shares the domestic environment and lifestyle of its owner. This review exposes how the domestication of dogs has brought them closer to humans based on their intrinsic and extrinsic similarities which were discerned through examining and comparing the current knowledge and data on the intestinal microbiota of humans and canines in the context of several spontaneous pathologies, including inflammatory bowel disease, obesity and diabetes mellitus.
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- 2022
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45. Bile Acids: Key Players in Inflammatory Bowel Diseases?
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Kriaa A, Mariaule V, Jablaoui A, Rhimi S, Mkaouar H, Hernandez J, Korkmaz B, Lesner A, Maguin E, Aghdassi A, and Rhimi M
- Subjects
- Bile Acids and Salts, Homeostasis, Humans, Inflammation, Gastrointestinal Microbiome, Inflammatory Bowel Diseases
- Abstract
Inflammatory bowel diseases (IBDs) have emerged as a public health problem worldwide with a limited number of efficient therapeutic options despite advances in medical therapy. Although changes in the gut microbiota composition are recognized as key drivers of dysregulated intestinal immunity, alterations in bile acids (BAs) have been shown to influence gut homeostasis and contribute to the pathogenesis of the disease. In this review, we explore the interactions involving BAs and gut microbiota in IBDs, and discuss how the gut microbiota-BA-host axis may influence digestive inflammation.
- Published
- 2022
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46. Editorial: Probiotic Trigger Molecules in Action.
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Novak J, Maguin E, Najjari A, and Papadimitriou K
- Abstract
Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
- Published
- 2021
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47. SP-1, a Serine Protease from the Gut Microbiota, Influences Colitis and Drives Intestinal Dysbiosis in Mice.
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Kriaa A, Jablaoui A, Rhimi S, Soussou S, Mkaouar H, Mariaule V, Gruba N, Gargouri A, Maguin E, Lesner A, and Rhimi M
- Subjects
- Amino Acid Sequence, Animals, Colitis chemically induced, Conserved Sequence, Dextran Sulfate, Feces enzymology, Inflammation pathology, Intestinal Mucosa pathology, Kinetics, Lactobacillus enzymology, Male, Mice, Inbred C57BL, Phylogeny, Serine Proteases administration & dosage, Serine Proteases chemistry, Serine Proteases isolation & purification, Substrate Specificity, Subtilisin chemistry, Mice, Colitis enzymology, Colitis microbiology, Dysbiosis enzymology, Dysbiosis microbiology, Gastrointestinal Microbiome, Intestines pathology, Serine Proteases metabolism
- Abstract
Increased protease activity has been linked to the pathogenesis of IBD. While most studies have been focusing on host proteases in gut inflammation, it remains unclear how to address the potential contribution of their bacterial counterparts. In the present study, we report a functional characterization of a newly identified serine protease, SP-1, from the human gut microbiota. The serine protease repertoire of gut Clostridium was first explored, and the specificity of SP-1 was analyzed using a combinatorial chemistry method. Combining in vitro analyses and a mouse model of colitis, we show that oral administration of recombinant bacteria secreting SP-1 (i) compromises the epithelial barrier, (ii) alters the microbial community, and (ii) exacerbates colitis. These findings suggest that gut microbial protease activity may constitute a valuable contributor to IBD and could, therefore, represent a promising target for the treatment of the disease.
- Published
- 2021
- Full Text
- View/download PDF
48. Alcohol and cannabis co-use and social context as risk pathways to sexual assault.
- Author
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Read JP, Colder CR, Livingston JA, Maguin E, and Egerton G
- Subjects
- Adult, Ethanol, Humans, Social Environment, Young Adult, Cannabis, Crime Victims, Sex Offenses
- Abstract
Objective: Simultaneous use of alcohol in combination with cannabis ("co-use") is common among young adults, and associated with myriad consequences. Yet no studies have examined how co-use may confer vulnerability for sexual assault (SA). Further, though both co-use and SA commonly occur in social settings, there have been no examinations of the role that co-use may play in the broader social context that leads to assault risk. This was the objective of the present study. Method: In a community sample of young adult women, ( N = 174; M
age = 22.6), we examined risk pathways to SA, guided by Routine Activities Theory (Mustaine & Tewksbury, Criminal Justice Review, 2002, 27, 89). Using a longitudinal burst design with 27 daily assessments across 1 year, women reported on their own and others' alcohol, cannabis, and co-use, and on social context and assault experiences. Results: Multilevel path model results showed alcohol and cannabis co-use to confer unique risk for SA, above and beyond the influence of use of either substance alone. Intoxication and components of the co-use social context (proximity to offenders) mediated this risk. Importantly, we observed a key role for co-use by others within the social context in assault risk. Conclusions: This study adds to the literature by providing a nuanced and contextual account of how cannabis-alcohol co-use may lead to assault vulnerability in young adult women. Findings underscore the need for intervention efforts that expand their focus to include the broader social context, and the role that the use and co-use behaviors of others may play within this context. (PsycInfo Database Record (c) 2021 APA, all rights reserved).- Published
- 2021
- Full Text
- View/download PDF
49. Tolerogenic Dendritic Cells Shape a Transmissible Gut Microbiota That Protects From Metabolic Diseases.
- Author
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Lécuyer E, Le Roy T, Gestin A, Lacombe A, Philippe C, Ponnaiah M, Huré JB, Fradet M, Ichou F, Boudebbouze S, Huby T, Gautier E, Rhimi M, Maguin E, Kapel N, Gérard P, Venteclef N, Garlatti M, Chassaing B, and Lesnik P
- Subjects
- Animals, Dendritic Cells pathology, Diet, High-Fat, Inflammation pathology, Male, Metabolic Diseases pathology, Mice, Mice, Transgenic, Obesity pathology, Dendritic Cells metabolism, Gastrointestinal Microbiome physiology, Inflammation metabolism, Metabolic Diseases metabolism, Obesity metabolism
- Abstract
Excess chronic contact between microbial motifs and intestinal immune cells is known to trigger a low-grade inflammation involved in many pathologies such as obesity and diabetes. The important skewing of intestinal adaptive immunity in the context of diet-induced obesity (DIO) is well described, but how dendritic cells (DCs) participate in these changes is still poorly documented. To address this question, we challenged transgenic mice with enhanced DC life span and immunogenicity (DC
hBcl-2 mice) with a high-fat diet. Those mice display resistance to DIO and metabolic alterations. The DIO-resistant phenotype is associated with healthier parameters of intestinal barrier function and lower intestinal inflammation. DChBcl-2 DIO-resistant mice demonstrate a particular increase in tolerogenic DC numbers and function, which is associated with strong intestinal IgA, T helper 17, and regulatory T-cell immune responses. Microbiota composition and function analyses reveal that the DChBcl-2 mice microbiota is characterized by lower immunogenicity and an enhanced butyrate production. Cohousing experiments and fecal microbial transplantations are sufficient to transfer the DIO resistance status to wild-type mice, demonstrating that maintenance of DCs' tolerogenic ability sustains a microbiota able to drive DIO resistance. The tolerogenic function of DCs is revealed as a new potent target in metabolic disease management., (© 2021 by the American Diabetes Association.)- Published
- 2021
- Full Text
- View/download PDF
50. Gut Serpinome: Emerging Evidence in IBD.
- Author
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Mkaouar H, Mariaule V, Rhimi S, Hernandez J, Kriaa A, Jablaoui A, Akermi N, Maguin E, Lesner A, Korkmaz B, and Rhimi M
- Subjects
- Animals, Humans, Gastrointestinal Microbiome, Inflammatory Bowel Diseases physiopathology, Serine Proteases chemistry, Serpins metabolism
- Abstract
Inflammatory bowel diseases (IBD) are incurable disorders whose prevalence and global socioeconomic impact are increasing. While the role of host genetics and immunity is well documented, that of gut microbiota dysbiosis is increasingly being studied. However, the molecular basis of the dialogue between the gut microbiota and the host remains poorly understood. Increased activity of serine proteases is demonstrated in IBD patients and may contribute to the onset and the maintenance of the disease. The intestinal proteolytic balance is the result of an equilibrium between the proteases and their corresponding inhibitors. Interestingly, the serine protease inhibitors (serpins) encoded by the host are well reported; in contrast, those from the gut microbiota remain poorly studied. In this review, we provide a concise analysis of the roles of serine protease in IBD physiopathology and we focus on the serpins from the gut microbiota (gut serpinome) and their relevance as a promising therapeutic approach.
- Published
- 2021
- Full Text
- View/download PDF
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