45 results on '"Madiraju MV"'
Search Results
2. Mycobacterium tuberculosis oriC sequestration by MtrA response regulator.
- Author
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Purushotham G, Sarva KB, Blaszczyk E, Rajagopalan M, and Madiraju MV
- Subjects
- Cell Division physiology, DNA-Binding Proteins metabolism, Gene Expression Regulation, Bacterial, Phosphorylation, ATP-Binding Cassette Transporters genetics, ATP-Binding Cassette Transporters metabolism, Bacterial Proteins genetics, Bacterial Proteins metabolism, DNA Replication physiology, Mycobacterium tuberculosis genetics, Mycobacterium tuberculosis metabolism, Replication Origin
- Abstract
The regulators of Mycobacterium tuberculosis DNA replication are largely unknown. Here, we demonstrate that in synchronously replicating M. tuberculosis, MtrA access to origin of replication (oriC) is enriched in the post-replication (D) period. The increased oriC binding results from elevated MtrA phosphorylation (MtrA∼P) as evidenced by reduced expression of dnaN, dnaA and increased expression of select cell division targets. Overproduction of gain-of-function MtrAY102C advanced the MtrA oriC access to the C period, reduced dnaA and dnaN expression, interfered with replication synchrony and compromised cell division. Overproduction of wild-type (MtrA+) or phosphorylation-defective MtrAD56N did not promote oriC access in the C period, nor affected cell cycle progression. MtrA interacts with DnaA signaling a possibility that DnaA helps load MtrA on oriC. Therefore, oriC sequestration by MtrA∼P in the D period may normally serve to prevent untimely initiations and that DnaA-MtrA interactions may facilitate regulated oriC replication. Finally, despite the near sequence identity of MtrA in M. smegmatis and M. tuberculosis, the M. smegmatis oriC is not MtrA-target. We conclude that M. tuberculosis oriC has evolved to be regulated by MtrA and that cell cycle progression in this organisms are governed, at least in part, by oscillations in the MtrA∼P levels., (© 2015 John Wiley & Sons Ltd.)
- Published
- 2015
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3. Mycobacterium tuberculosis MtrB sensor kinase interactions with FtsI and Wag31 proteins reveal a role for MtrB distinct from that regulating MtrA activities.
- Author
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Plocinska R, Martinez L, Gorla P, Pandeeti E, Sarva K, Blaszczyk E, Dziadek J, Madiraju MV, and Rajagopalan M
- Subjects
- ATP-Binding Cassette Transporters metabolism, Protein Binding, Bacterial Proteins metabolism, Gene Expression Regulation, Bacterial, Mycobacterium tuberculosis enzymology, Mycobacterium tuberculosis metabolism, Peptidoglycan Glycosyltransferase metabolism, Protein Interaction Mapping, RNA-Binding Proteins metabolism, Transcription Factors metabolism
- Abstract
The septal association of Mycobacterium tuberculosis MtrB, the kinase partner of the MtrAB two-component signal transduction system, is necessary for the optimal expression of the MtrA regulon targets, including ripA, fbpB, and ftsI, which are involved in cell division and cell wall synthesis. Here, we show that MtrB, irrespective of its phosphorylation status, interacts with Wag31, whereas only phosphorylation-competent MtrB interacts with FtsI. We provide evidence that FtsI depletion compromises the MtrB septal assembly and MtrA regulon expression; likewise, the absence of MtrB compromises FtsI localization and, possibly, FtsI activity. We conclude from these results that FtsI and MtrB are codependent for their activities and that FtsI functions as a positive modulator of MtrB activation and MtrA regulon expression. In contrast to FtsI, Wag31 depletion does not affect MtrB septal assembly and MtrA regulon expression, whereas the loss of MtrB increased Wag31 localization and the levels of PknA/PknB (PknA/B) serine-threonine protein kinase-mediated Wag31 phosphorylation. Interestingly, we found that FtsI decreased levels of phosphorylated Wag31 (Wag31∼P) and that MtrB interacted with PknA/B. Overall, our results indicate that MtrB interactions with FtsI, Wag31, and PknA/B are required for its optimal localization, MtrA regulon expression, and phosphorylation of Wag31. Our results emphasize a new role for MtrB in cell division and cell wall synthesis distinct from that regulating the MtrA phosphorylation activities., (Copyright © 2014, American Society for Microbiology. All Rights Reserved.)
- Published
- 2014
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4. Mycobacterium tuberculosis MtrAY102C is a gain-of-function mutant that potentially acts as a constitutively active protein.
- Author
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Satsangi AT, Pandeeti EP, Sarva K, Rajagopalan M, and Madiraju MV
- Subjects
- ATP-Binding Cassette Transporters genetics, Asparagine, Aspartic Acid, Escherichia coli physiology, Gene Expression Regulation, Bacterial, Humans, Mutation, Mycobacterium smegmatis genetics, Mycobacterium tuberculosis genetics, Phosphorylation, Promoter Regions, Genetic, ATP-Binding Cassette Transporters metabolism, Bacterial Proteins metabolism, Cell Membrane metabolism, Cell Wall metabolism, Mycobacterium smegmatis metabolism, Mycobacterium tuberculosis metabolism, RNA-Binding Proteins metabolism, Transcription Factors metabolism
- Abstract
The MtrAB histidine-aspartate signal transduction of mycobacteria includes the response regulator MtrA and sensor kinase MtrB. We recently showed that Mycobacterium smegmatis ΔmtrB is filamentous, defective for cell division, cell shape maintenance and shows compromised MtrA target gene expression. Interestingly, overproduction of phosphorylation competent M. tuberculosis MtrAY102C reverses the ΔmtrB mutant phenotype, although the genetic basis of phenotype reversal is unknown. Here we show that introduction of D56N mutation in MtrAY102C completely abolished its phosphorylation potential yet the double mutant protein retained a partial ability to reverse the mtrB mutant phenotype indicating that phosphorylation activity is not necessary for the function of MtrAY102C. The phosphorylation-defective MtrAD56N-Y102C protein bound its target promoters ripA and fbpB efficiently. Together, these results support a hypothesis that the gain-of-function phenotype of MtrAY102C is in part due to its ability to function as a constitutively active protein in the absence of phosphorylation., (Copyright © 2013 Elsevier Ltd. All rights reserved.)
- Published
- 2013
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5. The lack of L-PG production and the repercussions of it in regards to M. Tuberculosis interactions with mononuclear phagocytes.
- Author
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Fol M, Głobińska A, Stączek P, Kowalewicz-Kulbat M, Druszczyńska M, Madiraju MV, and Rudnicka W
- Subjects
- Cells, Cultured, Cytokines immunology, Humans, Monocytes immunology, Mycobacterium tuberculosis cytology, Mycobacterium tuberculosis genetics, Phagocytes immunology, Tuberculosis immunology, Cell Communication, Lysine biosynthesis, Monocytes cytology, Mycobacterium tuberculosis metabolism, Phagocytes cytology, Phosphatidylglycerols biosynthesis, Tuberculosis microbiology
- Abstract
The lysine connection with phosphatidylglycerol (PG) alters the M. tuberculosis(Mtb) surface charge, and consequently it may decrease the bacterial vulnerability to antimicrobial action of the immune cells. The aim of the study was to assess the significance of PG lysinylation in the Mtb interactions with mononuclear phagocytes. Both the Mtb strain with deletion of lysX gene (Mtb-lysX) which is responsible for PG lysinylation as well as the complemented strain (Mtb-compl) was used to infect human blood monocytes or THP-1 cells. The monocytes were obtained by MACS technique, or THP-1 cells. The Mtb-lysX strain has exhibited the enhanced sensitivity to HNP 1-3. However, it was not susceptible to bactericidal action of cathepsin G. The LysX deletion did not influence the Mtb ability of monocyte induction to IL-10 secretion. The intra- and extracellular expression of MHC-II was similarly reduced after the Mtb-lysX or Mtb-Rv infections. Noticeably significant is that the Mtb strain with deleted lysX has not affected the intensity of the gene expression of cathepsin G compared to the uninfected monocytes. That is the clear contrast to what the Mtb-Rv strain has proved. The obtained results suggest that the Mtb ability to lysinylate PG is a participatory element in mycobacterial strategy of survival inside phagocytic cells. However, the extended studies are needed to determine its influence on the other immune cells and define its role in the developing of Mtb infection.
- Published
- 2013
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6. Interactions between an M. tuberculosis strain overexpressing mtrA and mononuclear phagocytes.
- Author
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Fol M, Iwan-Barańska L, Stączek P, Krupiński M, Różalska S, Kowalewicz-Kulbat M, Druszczyńska M, Madiraju MV, Kaczmarczyk D, and Rudnicka W
- Subjects
- Anti-Bacterial Agents chemistry, Cathepsin G metabolism, Cytokines metabolism, Flow Cytometry, Humans, Interleukin-10 metabolism, Interleukin-12 metabolism, Macrophages metabolism, Microscopy, Confocal, Monocytes cytology, Mutation, Mycobacterium tuberculosis growth & development, Nitric Oxide metabolism, Nitric Oxide Synthase Type II metabolism, Phosphorylation, RNA-Binding Proteins genetics, Real-Time Polymerase Chain Reaction, Signal Transduction, Transcription Factors genetics, ATP-Binding Cassette Transporters genetics, Bacterial Proteins genetics, Monocytes microbiology, Mycobacterium tuberculosis genetics
- Abstract
Purpose: It was previously shown that the bacterial two-component regulatory signal transduction (2CR) system MtrAB may be associated with the ability of M. tuberculosis (Mtb) to survive in macrophages. In the present work Mtb mutants: Rv-78 with overexpression of mtrA and Rv-129 with elevated level of phosphorylation-defective MtrA were used for further investigation of the potential influence of the MtrAB system on Mtb interaction with human monocytes., Material/methods: Flow cytometry was used to determine the expression of MHC class II molecules. The expression of genes for inducible nitric oxide synthase (iNOS) and cathepsin G was quantified by RT-PCR. The association of Mtb strains with Rab5 and Rab7 positive vacuoles was investigated applying confocal microscopy. IL-10 and IL-12 secretion by monocytes as well as the Mtb susceptibility to cathepsin G were investigated., Results: Mutation-carried and wild type Mtb strains inhibited MHC class II expression on monocytes to a similar extent. Monocyte stimulation with mycobacteria led to the increased production of IL-10 but no detectable amounts of IL-12 or NO were observed. Expression of the gene for iNOS was not detected while that for cathepsin G was shown, however its intensity was not associated with MtrA mutation. Mtb mutant strains were more effectively enclosed in phagosomes containing the late endosome marker Rab7 as compared to the control., Conclusions: The results may confirm the importance of the MtrAB system in mycobacterial capacity for successful survival in phagocytes, especially in the context of high degree of colocalization of Mtb Rv-78 to mature phagosomes.
- Published
- 2013
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7. Septal localization of the Mycobacterium tuberculosis MtrB sensor kinase promotes MtrA regulon expression.
- Author
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Plocinska R, Purushotham G, Sarva K, Vadrevu IS, Pandeeti EV, Arora N, Plocinski P, Madiraju MV, and Rajagopalan M
- Subjects
- ATP-Binding Cassette Transporters metabolism, Bacterial Proteins metabolism, Blotting, Western, Cell Division, Cell Membrane metabolism, Cell Wall metabolism, Cytoskeletal Proteins genetics, Cytoskeletal Proteins metabolism, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Microscopy, Fluorescence, Mutation, Mycobacterium smegmatis genetics, Mycobacterium smegmatis metabolism, Mycobacterium tuberculosis metabolism, Phosphorylation, Phosphotransferases genetics, Phosphotransferases metabolism, RNA-Binding Proteins genetics, RNA-Binding Proteins metabolism, Reverse Transcriptase Polymerase Chain Reaction, Transcription Factors genetics, Transcription Factors metabolism, ATP-Binding Cassette Transporters genetics, Bacterial Proteins genetics, Gene Expression Regulation, Bacterial, Mycobacterium tuberculosis genetics, Regulon genetics
- Abstract
The mechanisms responsible for activation of the MtrAB two-component regulatory signal transduction system, which includes sensor kinase MtrB and response regulator MtrA, are unknown. Here, we show that an MtrB-GFP fusion protein localized to the cell membrane, the septa, and the poles in Mycobacterium tuberculosis and Mycobacterium smegmatis. This localization was independent of MtrB phosphorylation status but dependent upon the assembly of FtsZ, the initiator of cell division. The M. smegmatis mtrB mutant was filamentous, defective for cell division, and contained lysozyme-sensitive cell walls. The mtrB phenotype was complemented by either production of MtrB protein competent for phosphorylation or overproduction of MtrA(Y102C) and MtrA(D13A) mutant proteins exhibiting altered phosphorylation potential, indicating that either MtrB phosphorylation or MtrB independent expression of MtrA regulon genes, including those involved in cell wall processing, are necessary for regulated cell division. In partial support of this observation, we found that the essential cell wall hydrolase ripA is an MtrA target and that the expression of bona fide MtrA targets ripA, fbpB, and dnaA were compromised in the mtrB mutant and partially rescued upon MtrA(Y102C) and MtrA(D13A) overproduction. MtrB septal assembly was compromised upon FtsZ depletion and exposure of cells to mitomycin C, a DNA damaging agent, which interferes with FtsZ ring assembly. Expression of MtrA targets was also compromised under the above conditions, indicating that MtrB septal localization and MtrA regulon expression are linked. We propose that MtrB septal association is a necessary feature of MtrB activation that promotes MtrA phosphorylation and MtrA regulon expression.
- Published
- 2012
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8. Mycobacterium tuberculosis mtrA merodiploid strains with point mutations in the signal-receiving domain of MtrA exhibit growth defects in nutrient broth.
- Author
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Al Zayer M, Stankowska D, Dziedzic R, Sarva K, Madiraju MV, and Rajagopalan M
- Subjects
- ATP-Binding Cassette Transporters isolation & purification, Acyltransferases genetics, Amino Acids metabolism, Antigens, Bacterial genetics, Bacterial Proteins isolation & purification, Gene Expression Regulation, Bacterial, Mycobacterium tuberculosis metabolism, Phosphorylation, Promoter Regions, Genetic, Protein Binding, Protein Structure, Tertiary, RNA-Binding Proteins genetics, RNA-Binding Proteins isolation & purification, RNA-Binding Proteins metabolism, Transcription Factors genetics, Transcription Factors isolation & purification, Transcription Factors metabolism, ATP-Binding Cassette Transporters genetics, ATP-Binding Cassette Transporters metabolism, Bacterial Proteins genetics, Bacterial Proteins metabolism, Mycobacterium tuberculosis genetics, Mycobacterium tuberculosis growth & development, Point Mutation genetics, Signal Transduction genetics
- Abstract
The genetic and biochemical aspects of the essential Mycobacteriumtuberculosis MtrAB two-component regulatory signal transduction (2CRS) system have not been extensively investigated. We show by bacterial two-hybrid assay that the response regulator (RR) MtrA and the sensor kinase MtrB interact. We further demonstrate that divalent metal ions [Mg²+, Ca²+ or both] promote MtrB kinase autophosphorylation activity, but only Mg²+ promotes phosphotransfer to MtrA. Replacement of the conserved aspartic acid residues at positions 13 and 56 with alanine (D13A), glutamine (D56E) or asparagine (D56N) prevented MtrA phosphorylation, indicating that these residues are important for phosphorylation. The MtrA(D56E) and MtrA(D13A) proteins bound to the promoter of fbpB, the gene encoding antigen 85B protein, efficiently in the absence of phosphorylation, whereas MtrA(D56N) did not. We also show that M.tuberculosismtrA merodiploids overproducing MtrA(D13A), unlike cells overproducing wild-type MtrA, grow poorly in nutrient broth and show reduced expression of fbpB. These latter findings are reminiscent of a phenotype associated with MtrA overproduction during intramacrophage growth. Our results suggest that MtrA(D13A) behaves like a constitutively active response regulator and that further characterization of mtrA merodiploid strains will provide valuable clues to the MtrAB system., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2011
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9. Alterations in phospholipid catabolism in Mycobacterium tuberculosis lysX mutant.
- Author
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Maloney E, Lun S, Stankowska D, Guo H, Rajagoapalan M, Bishai WR, and Madiraju MV
- Abstract
Mycobacterium tuberculosis lysX mutant, defective for production of lysinylated phosphatidylglycerol (L-PG), is sensitive to cationic antimicrobial peptides, is not proficient for proliferation in mice lungs and exhibits altered membrane potential (17). In the present study we show that a lysX complement strain expressing lysX from inducible tet promoter is proficient in restoring lysX phenotypes, confirming that the observed phenotypes are specific to lysX. To evaluate the correlation between changes in membrane potential and lysX activity, we visualized regions of cardiolipin (CL), one of the abundant phospholipids of mycobacteria, by staining with fluorescent dye 10-N-nonyl-acridine orange (NAO) and found that CL is localized as bright spots at septal regions and poles of actively dividing cells, but not in stationary phase cells. lysX mutants were elongated and showed more numerous and brighter CL staining at both midcell and quarter cell septa, compared with wild type, indicating a defect in the cell division process. Evaluation of (14)C-acetic acid incorporation into major phospholipids such as CL, phosphatidylethanolamine (PE), phosphatidylinositol and their degradation between lysX mutant and its parent revealed differences in the turnover of PE and PI. Our results favor a hypothesis that alterations in phospholipids metabolism could be contributing to changes in membrane potential, hence the observed phenotype of lysX mutant.
- Published
- 2011
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10. Control of CydB and GltA1 expression by the SenX3 RegX3 two component regulatory system of Mycobacterium tuberculosis.
- Author
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Roberts G, Vadrevu IS, Madiraju MV, and Parish T
- Subjects
- Bacterial Proteins genetics, Bacterial Proteins metabolism, Base Sequence, DNA Primers, Electrophoretic Mobility Shift Assay, Gene Expression Profiling, Mycobacterium tuberculosis genetics, Mycobacterium tuberculosis metabolism, Operon, Phosphorylation, Promoter Regions, Genetic, Recombinant Proteins genetics, Recombinant Proteins metabolism, Reverse Transcriptase Polymerase Chain Reaction, Virulence, Bacterial Proteins physiology, Genes, Bacterial, Mycobacterium tuberculosis physiology
- Abstract
Two component regulatory systems are used widely by bacteria to coordinate changes in global gene expression profiles in response to environmental signals. The SenX3-RegX3 two component system of Mycobacterium tuberculosis has previously been shown to play a role in virulence and phosphate-responsive control of gene expression. We demonstrate that expression of SenX3-RegX3 is controlled in response to growth conditions, although the absolute changes are small. Global gene expression profiling of a RegX3 deletion strain and wild-type strain in different culture conditions (static, microaerobic, anaerobic), as well as in an over-expressing strain identified a number of genes with changed expression patterns. Among those were genes previously identified as differentially regulated in aerobic culture, including ald (encoding alanine dehydrogenase) cyd,encoding a subunit of the cytochrome D ubiquinol oxidase, and gltA1, encoding a citrate synthase. Promoter activity in the upstream regions of both cydB and gltA1 was altered in the RegX3 deletion strain. DNA-binding assays confirmed that RegX3 binds to the promoter regions of ald, cydB and gltA1 in a phosphorylation-dependent manner. Taken together these data suggest a direct role for the SenX-RegX3 system in modulating expression of aerobic respiration, in addition to its role during phosphate limitation.
- Published
- 2011
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11. Mycobacterium tuberculosis origin of replication and the promoter for immunodominant secreted antigen 85B are the targets of MtrA, the essential response regulator.
- Author
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Rajagopalan M, Dziedzic R, Al Zayer M, Stankowska D, Ouimet MC, Bastedo DP, Marczynski GT, and Madiraju MV
- Subjects
- ATP-Binding Cassette Transporters genetics, Antigens, Bacterial genetics, Bacterial Proteins genetics, DNA Replication physiology, Mycobacterium tuberculosis genetics, Origin Recognition Complex genetics, Origin Recognition Complex metabolism, Phosphorylation physiology, ATP-Binding Cassette Transporters metabolism, Antigens, Bacterial metabolism, Bacterial Proteins metabolism, Gene Expression Regulation, Bacterial physiology, Mycobacterium tuberculosis metabolism, Promoter Regions, Genetic physiology, Replication Origin physiology
- Abstract
Efficient proliferation of Mycobacterium tuberculosis (Mtb) inside macrophage requires that the essential response regulator MtrA be optimally phosphorylated. However, the genomic targets of MtrA have not been identified. We show by chromatin immunoprecipitation and DNase I footprinting that the chromosomal origin of replication, oriC, and the promoter for the major secreted immunodominant antigen Ag85B, encoded by fbpB, are MtrA targets. DNase I footprinting analysis revealed that MtrA recognizes two direct repeats of GTCACAgcg-like sequences and that MtrA approximately P, the phosphorylated form of MtrA, binds preferentially to these targets. The oriC contains several MtrA motifs, and replacement of all motifs or of a single select motif with TATATA compromises the ability of oriC plasmids to maintain stable autonomous replication in wild type and MtrA-overproducing strains, indicating that the integrity of the MtrA motif is necessary for oriC replication. The expression of the fbpB gene is found to be down-regulated in Mtb cells upon infection when these cells overproduce wild type MtrA but not when they overproduce a nonphosphorylated MtrA, indicating that MtrA approximately P regulates fbpB expression. We propose that MtrA is a regulator of oriC replication and that the ability of MtrA to affect apparently unrelated targets, i.e. oriC and fbpB, reflects its main role as a coordinator between the proliferative and pathogenic functions of Mtb.
- Published
- 2010
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12. The two-domain LysX protein of Mycobacterium tuberculosis is required for production of lysinylated phosphatidylglycerol and resistance to cationic antimicrobial peptides.
- Author
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Maloney E, Stankowska D, Zhang J, Fol M, Cheng QJ, Lun S, Bishai WR, Rajagopalan M, Chatterjee D, and Madiraju MV
- Subjects
- Animals, Bacterial Proteins biosynthesis, Bacterial Proteins genetics, Bacterial Proteins metabolism, Cytokines metabolism, Drug Resistance, Bacterial, Female, Guinea Pigs, Humans, Lung metabolism, Lung pathology, Lysine genetics, Lysosomal Membrane Proteins metabolism, Macrophages metabolism, Membrane Potentials, Mice, Mice, Inbred C57BL, Mutation, Mycobacterium tuberculosis drug effects, Mycobacterium tuberculosis genetics, Phagosomes metabolism, Phenotype, Phosphatidylglycerols chemistry, Phosphatidylglycerols metabolism, Phospholipids metabolism, Protein Structure, Tertiary, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Antimicrobial Cationic Peptides pharmacology, Lysine metabolism, Lysophospholipids biosynthesis, Mycobacterium tuberculosis metabolism, Phosphatidylglycerols biosynthesis
- Abstract
The well-recognized phospholipids (PLs) of Mycobacterium tuberculosis (Mtb) include several acidic species such as phosphatidylglycerol (PG), cardiolipin, phosphatidylinositol and its mannoside derivatives, in addition to a single basic species, phosphatidylethanolamine. Here we demonstrate that an additional basic PL, lysinylated PG (L-PG), is a component of the PLs of Mtb H37Rv and that the lysX gene encoding the two-domain lysyl-transferase (mprF)-lysyl-tRNA synthetase (lysU) protein is responsible for L-PG production. The Mtb lysX mutant is sensitive to cationic antibiotics and peptides, shows increased association with lysosome-associated membrane protein-positive vesicles, and it exhibits altered membrane potential compared to wild type. A lysX complementing strain expressing the intact lysX gene, but not one expressing mprF alone, restored the production of L-PG and rescued the lysX mutant phenotypes, indicating that the expression of both proteins is required for LysX function. The lysX mutant also showed defective growth in mouse and guinea pig lungs and showed reduced pathology relative to wild type, indicating that LysX activity is required for full virulence. Together, our results suggest that LysX-mediated production of L-PG is necessary for the maintenance of optimal membrane integrity and for survival of the pathogen upon infection.
- Published
- 2009
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13. Synchronous replication initiation in novel Mycobacterium tuberculosis dnaA cold-sensitive mutants.
- Author
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Nair N, Dziedzic R, Greendyke R, Muniruzzaman S, Rajagopalan M, and Madiraju MV
- Subjects
- Adenosine Triphosphate metabolism, Bacterial Proteins genetics, Cell Cycle, Cold Temperature, DNA-Binding Proteins genetics, Gene Expression Regulation, Bacterial, Mutation, Mycobacterium tuberculosis cytology, Mycobacterium tuberculosis metabolism, Bacterial Proteins metabolism, DNA Replication, DNA, Bacterial biosynthesis, DNA-Binding Proteins metabolism, Mycobacterium tuberculosis genetics
- Abstract
The genetic aspects of oriC replication initiation in Mycobacterium tuberculosis are largely unknown. A two-step genetic screen was utilized for isolating M. tuberculosis dnaA cold-sensitive (cos) mutants. First, a resident plasmid expressing functional dnaA integrated at the attB locus in dnaA null background was exchanged with an incoming plasmid bearing a mutagenized dnaA gene. Next, the mutants that were defective for growth at 30 degrees C, a non-permissive temperature, but resumed growth and DNA synthesis when shifted to 37 degrees C, a permissive temperature, were subsequently selected. Nucleotide sequencing analysis located mutations to different regions of the dnaA gene. Modulation of the growth temperatures led to synchronized DNA synthesis. The dnaA expression under synchronized DNA replication conditions continued to increase during the replication period, but decreased thereafter reflecting autoregulation. The dnaAcos mutants at 30 degrees C were elongated suggesting that they may possibly be blocked during the cell division. The DnaA115 protein is defective in its ability to interact with ATP at 30 degrees C, but not at 37 degrees C. Our results suggest that the optimal cell cycle progression and replication initiation in M. tuberculosis requires that the dnaA promoter remains active during the replication period and that the DnaA protein is able to interact with ATP.
- Published
- 2009
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14. Facilitation of dissociation reaction of nucleotides bound to Mycobacterium tuberculosis DnaA.
- Author
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Yamamoto K, Moomey M, Rajagopalan M, and Madiraju MV
- Subjects
- Adenosine Triphosphatases metabolism, Blotting, Western, Cell Membrane metabolism, Mycobacterium tuberculosis growth & development, Phospholipids metabolism, Bacterial Proteins metabolism, DNA Replication, DNA-Binding Proteins metabolism, Mycobacterium tuberculosis metabolism, Nucleotides metabolism
- Abstract
Acidic phospholipids have been shown to promote dissociation of bound nucleotides from Mycobacterium tuberculosis DnaA (DnaA(TB)) purified under denaturing conditions [Yamamoto et al., (2002) Modulation of Mycobacterium tuberculosis DnaA protein-adenine-nucleotide interactions by acidic phospholipids. Biochem. J., 363, 305-311]. In the present study, we show that a majority of DnaA(TB) in non-overproducing cells of M. tuberculosis is membrane associated. Estimation of phospholipid phosphorus following chloroform: methanol extraction of soluble DnaA(TB) purified under native conditions (nDnaA(TB)) confirmed the association with phospholipids. nDnaA(TB) exhibited weak ATPase activity, and rapidly exchanged ATP for bound ADP in the absence of any added phospholipids. We suggest that the outcome of intra-cellular DnaA(TB)-nucleotide interactions, hence DnaA(TB) activity, is influenced by phospholipids.
- Published
- 2008
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15. Interference of Mycobacterium tuberculosis cell division by Rv2719c, a cell wall hydrolase.
- Author
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Chauhan A, Lofton H, Maloney E, Moore J, Fol M, Madiraju MV, and Rajagopalan M
- Subjects
- Animals, Anti-Bacterial Agents pharmacology, Bacterial Proteins genetics, Cell Division drug effects, Cell Division genetics, Cell Division physiology, Cell Line, Cell Survival, Cells, Cultured, Cephalexin pharmacology, Cloning, Molecular, Gene Expression Regulation, Bacterial drug effects, Gene Expression Regulation, Bacterial genetics, Gene Expression Regulation, Enzymologic drug effects, Gene Expression Regulation, Enzymologic genetics, Green Fluorescent Proteins genetics, Green Fluorescent Proteins metabolism, Humans, Hydrolases genetics, Hydrolysis drug effects, Immunoblotting, Macrophages cytology, Macrophages microbiology, Microscopy, Fluorescence, Mutation genetics, Mycobacterium tuberculosis genetics, Mycobacterium tuberculosis growth & development, N-Acetylmuramoyl-L-alanine Amidase genetics, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Reverse Transcriptase Polymerase Chain Reaction, Bacterial Proteins metabolism, Cell Wall metabolism, Hydrolases metabolism, Mycobacterium tuberculosis enzymology, N-Acetylmuramoyl-L-alanine Amidase metabolism
- Abstract
The genetic factors responsible for the regulation of cell division in Mycobacterium tuberculosis are largely unknown. We showed that exposure of M. tuberculosis to DNA damaging agents, or to cephalexin, or growth of M. tuberculosis in macrophages increased cell length and sharply elevated the expression of Rv2719c, a LexA-controlled gene. Overexpression of Rv2719c in the absence of DNA damage or of antibiotic treatment also led to filamentation and reduction in viability both in broth and in macrophages indicating a correlation between Rv2719c levels and cell division. Overproduction of Rv2719c compromised midcell localization of FtsZ rings, but had no effect on the intracellular levels of FtsZ. In vitro, the Rv2719c protein did not interfere with the GTP-dependent polymerization activity of FtsZ indicating that the effects of Rv2719c on Z-ring assembly are indirect. Rv2719c protein exhibited mycobacterial murein hydrolase activity that was localized to the N-terminal 110 amino acids. Visualization of nascent peptidoglycan (PG) synthesis zones by probing with fluoresceinated vancomycin (Van-FL) and localization of green fluorescent protein-Rv2719c fusion suggested that the Rv2719c activity is targeted to potential PG synthesis zones. We propose that Rv2719c is a potential regulator of M. tuberculosis cell division and that its levels, and possibly activities, are modulated under a variety of growth conditions including growth in vivo and during DNA damage, so that the assembly of FtsZ-rings, and therefore the cell division, can proceed in a regulated manner.
- Published
- 2006
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16. Modulation of Mycobacterium tuberculosis proliferation by MtrA, an essential two-component response regulator.
- Author
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Fol M, Chauhan A, Nair NK, Maloney E, Moomey M, Jagannath C, Madiraju MV, and Rajagopalan M
- Subjects
- Animals, Culture Media, DNA-Binding Proteins metabolism, Female, Humans, Lung microbiology, Mice, Mice, Inbred C57BL, Mycobacterium tuberculosis metabolism, Mycobacterium tuberculosis pathogenicity, Phosphorylation, Spleen microbiology, ATP-Binding Cassette Transporters metabolism, Bacterial Proteins metabolism, Gene Expression Regulation, Bacterial, Macrophages microbiology, Mycobacterium tuberculosis growth & development, Signal Transduction
- Abstract
Paired two-component regulatory systems consisting of a sensor kinase and a response regulator are the major means by which bacteria sense and respond to different stimuli. The role of essential response regulator, MtrA, in Mycobacterium tuberculosis proliferation is unknown. We showed that elevating the intracellular levels of MtrA prevented M. tuberculosis from multiplying in macrophages, mice lungs and spleens, but did not affect its growth in broth. Intracellular trafficking analysis revealed that a vast majority of MtrA overproducing merodiploids were associated with lysosomal associated membrane protein (LAMP-1) positive vacuoles, indicating that intracellular growth attenuation is, in part, due to an impaired ability to block phagosome-lysosome fusion. A merodiploid strain producing elevated levels of phosphorylation-defective MtrA (MtrA(D53N)) was partially replicative in macrophages, but was attenuated in mice. Quantitative real-time PCR analyses revealed that expression of dnaA, an essential replication gene, was sharply upregulated during intramacrophage growth in the MtrA overproducer in a phosphorylation-dependent manner. Chromatin immunoprecipitation using anti-MtrA antibodies provided direct evidence that MtrA regulator binds to dnaA promoter in vivo indicating that dnaA promoter is a MtrA target. Simultaneous overexpression of mtrA regulator and its cognate mtrB kinase neither inhibited growth nor sharply increased the expression levels of dnaA in macrophages. We propose that proliferation of M. tuberculosis in vivo depends, in part, on the optimal ratio of phosphorylated to non-phosphorylated MtrA response regulator.
- Published
- 2006
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17. The intrinsic ATPase activity of Mycobacterium tuberculosis DnaA promotes rapid oligomerization of DnaA on oriC.
- Author
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Madiraju MV, Moomey M, Neuenschwander PF, Muniruzzaman S, Yamamoto K, Grimwade JE, and Rajagopalan M
- Subjects
- Adenosine Triphosphatases genetics, Bacterial Proteins genetics, Base Sequence, Chromosomes, Bacterial genetics, DNA Footprinting, DNA-Binding Proteins genetics, Molecular Sequence Data, Mutation, Mycobacterium tuberculosis metabolism, Surface Plasmon Resonance, Adenosine Triphosphatases metabolism, Bacterial Proteins metabolism, DNA Replication genetics, DNA-Binding Proteins metabolism, Mycobacterium tuberculosis genetics, Replication Origin genetics
- Abstract
Oligomerization of the initiator protein, DnaA, on the origin of replication (oriC) is crucial for initiation of DNA replication. Studies in Escherichia coli (Gram-negative) have revealed that binding of DnaA to ATP, but not hydrolysis of ATP, is sufficient to promote DnaA binding, oligomerization and DNA strand separation. To begin understanding the initial events involved in the initiation of DNA replication in Mycobacterium tuberculosis (Gram-positive), we investigated interactions of M. tuberculosis DnaA (DnaA(TB)) with oriC using surface plasmon resonance in the presence of ATP and ADP. We provide evidence that, in contrast to what is observed in E. coli, ATPase activity of DnaA(TB) promoted rapid oligomerization on oriC. In support, we found that a recombinant mutant DnaA(TB) proficient in binding to ATP, but deficient in ATPase activity, did not oligomerize as rapidly. The corresponding mutation in the dnaA gene of M. tuberculosis resulted in non-viability, presumably due to a defect in oriC-DnaA interactions. Dimethy sulphate (DMS) footprinting experiments revealed that DnaA(TB) bound to DnaA boxes similarly with ATP or ADP. DnaA(TB) binding to individual DnaA boxes revealed that rapid oligomerization on oriC is triggered only after the initial interaction of DnaA with individual DnaA boxes. We propose that ATPase activity enables the DnaA protomers on oriC to rapidly form oligomeric complexes competent for replication initiation.
- Published
- 2006
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18. Mycobacterium tuberculosis cells growing in macrophages are filamentous and deficient in FtsZ rings.
- Author
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Chauhan A, Madiraju MV, Fol M, Lofton H, Maloney E, Reynolds R, and Rajagopalan M
- Subjects
- Cell Division, Cell Line, Humans, Mycobacterium tuberculosis growth & development, Bacterial Proteins genetics, Cytoskeletal Proteins deficiency, Cytoskeletal Proteins genetics, Gene Expression Regulation, Bacterial, Macrophages microbiology, Mycobacterium tuberculosis cytology, Mycobacterium tuberculosis genetics
- Abstract
FtsZ, a bacterial homolog of tubulin, forms a structural element called the FtsZ ring (Z ring) at the predivisional midcell site and sets up a scaffold for the assembly of other cell division proteins. The genetic aspects of FtsZ-catalyzed cell division and its assembly dynamics in Mycobacterium tuberculosis are unknown. Here, with an M. tuberculosis strain containing FtsZ(TB) tagged with green fluorescent protein as the sole source of FtsZ, we examined FtsZ structures under various growth conditions. We found that midcell Z rings are present in approximately 11% of actively growing cells, suggesting that the low frequency of Z rings is reflective of their slow growth rate. Next, we showed that SRI-3072, a reported FtsZ(TB) inhibitor, disrupted Z-ring assembly and inhibited cell division and growth of M. tuberculosis. We also showed that M. tuberculosis cells grown in macrophages are filamentous and that only a small fraction had midcell Z rings. The majority of filamentous cells contained nonring, spiral-like FtsZ structures along their entire length. The levels of FtsZ in bacteria grown in macrophages or in broth were comparable, suggesting that Z-ring formation at midcell sites was compromised during intracellular growth. Our results suggest that the intraphagosomal milieu alters the expression of M. tuberculosis genes affecting Z-ring formation and thereby cell division.
- Published
- 2006
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19. Genetic evidence that mycobacterial FtsZ and FtsW proteins interact, and colocalize to the division site in Mycobacterium smegmatis.
- Author
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Rajagopalan M, Maloney E, Dziadek J, Poplawska M, Lofton H, Chauhan A, and Madiraju MV
- Subjects
- Aspartic Acid chemistry, Bacterial Proteins chemistry, Base Sequence, Biological Transport, Active, Cell Division, Cytoskeletal Proteins chemistry, Escherichia coli cytology, Escherichia coli genetics, Escherichia coli metabolism, Genes, Bacterial, Membrane Proteins chemistry, Mycobacterium smegmatis cytology, Plasmids genetics, Recombinant Fusion Proteins chemistry, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Two-Hybrid System Techniques, Bacterial Proteins genetics, Bacterial Proteins metabolism, Cytoskeletal Proteins genetics, Cytoskeletal Proteins metabolism, Membrane Proteins genetics, Membrane Proteins metabolism, Mycobacterium smegmatis genetics, Mycobacterium smegmatis metabolism
- Abstract
We provide genetic evidence to show that the Mycobacterium tuberculosis FtsZ and FtsW proteins interact, and that these interactions are biologically relevant. Furthermore, we show by fluorescence microscopy that Mycobacterium smegmatis FtsW is part of its septasomal complex and colocalizes with FtsZ to the midcell sites. Colocalization experiments reveal that approximately 27% of the cells with septal Z-rings contain FtsW whereas 93% of the cells with FtsW bands are associated with FtsZ indicating that FtsW is late recruit to the septum, as in Escherichia coli. Our results suggest that mycobacterial FtsZ can localize to the septum independent of FtsW, and that interactions of FtsW with FtsZ are critical for the formation of productive FtsZ-rings and the cell division process in mycobacteria.
- Published
- 2005
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20. Mutations in the GTP-binding and synergy loop domains of Mycobacterium tuberculosis ftsZ compromise its function in vitro and in vivo.
- Author
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Rajagopalan M, Atkinson MA, Lofton H, Chauhan A, and Madiraju MV
- Subjects
- Bacterial Proteins chemistry, Base Sequence, Cytoskeletal Proteins chemistry, DNA Primers, Hydrolysis, Mutagenesis, Site-Directed, Protein Conformation, Bacterial Proteins genetics, Cytoskeletal Proteins genetics, Mycobacterium tuberculosis genetics
- Abstract
The Mycobacterium tuberculosis FtsZ (FtsZ(TB)), unlike other eubacterial FtsZ proteins, shows slow GTP-dependent polymerization and weak GTP hydrolysis activities [E.L. White, L.J. Ross, R.C. Reynolds, L.E. Seitz, G.D. Moore, D.W. Borhani, Slow polymerization of Mycobacterium tuberculosis FtsZ, J. Bacteriol. 182 (2000) 4028-4034]. In an attempt to understand the biological significance of these findings, we created mutations in the GTP-binding (FtsZ(G103S)) and GTP hydrolysis (FtsZ(D210G)) domains of FtsZ and characterized the activities of the mutant proteins in vitro and in vivo. We show that FtsZ(G103S) is defective for binding to GTP and polymerization activities, and exhibited reduced GTPase activity whereas FtsZ(D210G) protein is proficient in binding to GTP, showing reduced polymerization activity but did not show any measurable GTPase activity. Visualization of FtsZ-GFP structures in ftsZ merodiploid strains by fluorescent microscopy revealed that FtsZ(D210G) is proficient in associating with Z-ring structures whereas FtsZ(G103S) is not. Finally, we show that Mycobacterium smegmatis ftsZ mutant strains producing corresponding mutant FtsZ proteins are non-viable indicating that mutant FtsZ proteins cannot function as the sole source for FtsZ, a result distinctly different from that reported for Escherichia coli. Together, our results indicate that optimal GTPase and polymerization activities of FtsZ are required to sustain cell division in mycobacteria and that the same conserved mutations in different bacterial species have distinct phenotypes.
- Published
- 2005
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21. Conditional expression of Mycobacterium smegmatis ftsZ, an essential cell division gene.
- Author
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Dziadek J, Rutherford SA, Madiraju MV, Atkinson MAL, and Rajagopalan M
- Subjects
- Base Sequence, DNA, Bacterial genetics, Gene Expression, Genetic Complementation Test, Mutation, Mycobacterium smegmatis growth & development, Mycobacterium tuberculosis cytology, Mycobacterium tuberculosis genetics, Mycobacterium tuberculosis growth & development, Phenotype, Plasmids genetics, Promoter Regions, Genetic, Species Specificity, Bacterial Proteins genetics, Cell Division genetics, Cytoskeletal Proteins, Genes, Bacterial, Mycobacterium smegmatis cytology, Mycobacterium smegmatis genetics
- Abstract
To understand the role of Mycobacterium smegmatis ftsZ (ftsZ(smeg)) in the cell division process, the ftsZ gene was characterized at the genetic level. This study shows that ftsZ(smeg) is an essential gene in that it can only be disrupted in a merodiploid background carrying another functional copy. Expression of ftsZ(smeg) in M. smegmatis from a constitutively active mycobacterial promoter resulted in lethality whereas that from a chemically inducible acetamidase (ami) promoter led to FtsZ accumulation, filamentation and cell lysis. To further understand the roles of ftsZ in cell division a conditionally complementing ftsZ(smeg) mutant strain was constructed in which ftsZ expression is controlled by acetamide. Growth in the presence of 0.2 % acetamide increased FtsZ levels approximately 1.4-fold, but did not decrease viability or change cell length. Withdrawal of acetamide reduced FtsZ levels, decreased viability, increased cell length and eventually lysed the cells. Finally, it is shown that ftsZ(smeg) function in M. smegmatis can be replaced with the Mycobacterium tuberculosis counterpart, indicating that heterologous FtsZ(tb) can independently initiate the formation of Z-rings and catalyse the septation process. It is concluded that optimal levels of M. smegmatis FtsZ are required to sustain cell division and that the cell division initiation mechanisms are similar in mycobacteria.
- Published
- 2003
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22. Escherichia coli RecO protein anneals ssDNA complexed with its cognate ssDNA-binding protein: A common step in genetic recombination.
- Author
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Kantake N, Madiraju MV, Sugiyama T, and Kowalczykowski SC
- Subjects
- Amino Acid Sequence, Bacteriophage T4 metabolism, DNA Damage, Escherichia coli genetics, Escherichia coli metabolism, Evolution, Molecular, Models, Genetic, Molecular Sequence Data, Protein Binding, Rad51 Recombinase, Rad52 DNA Repair and Recombination Protein, Replication Protein A, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae metabolism, Sequence Alignment, Sequence Homology, Amino Acid, Species Specificity, DNA, Bacterial metabolism, DNA, Single-Stranded metabolism, DNA-Binding Proteins metabolism, Escherichia coli Proteins metabolism, Membrane Proteins metabolism, Recombination, Genetic, Saccharomyces cerevisiae Proteins metabolism, Viral Proteins metabolism
- Abstract
We present biochemical evidence for the functional similarity of Escherichia coli RecO protein and bacteriophage T4 UvsY protein to eukaryotic Rad52 protein. Although Rad52 protein is conserved in eukaryotes, no sequence homologue has been found in prokaryotes or archeabacteria. Rad52 protein has two unique activities: facilitation of replication protein-A (RPA) displacement by Rad51 protein and annealing of RPA-single-stranded DNA (ssDNA) complexes. Both activities require species-specific interaction between Rad52 protein and RPA. Both RecO and UvsY proteins also possess the former property with regard to their cognate ssDNA-binding protein. Here, we report that RecO protein anneals ssDNA that is complexed with only its cognate ssDNA-binding protein, suggesting the involvement of species-specific interactions. Optimal activity for RecO protein occurs after formation of a 1:1 complex with SSB protein. RecR protein, which is known to stimulate RecO protein to facilitate SSB protein displacement by RecA protein, inhibits annealing by RecO protein, suggesting that RecR protein may regulate the choice between the DNA strand invasion versus annealing pathways. In addition, we show that UvsY protein anneals ssDNA; furthermore, ssDNA, which is complexed only with its cognate ssDNA-binding protein, is annealed in the presence of UvsY protein. These results indicate that RecO and possibly UvsY proteins are functional counterparts of Rad52 protein. Based on the conservation of these functions, we propose a modified double-strand break repair model that includes DNA annealing as an important intermediate step.
- Published
- 2002
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23. Mutations in the CCGTTCACA DnaA box of Mycobacterium tuberculosis oriC that abolish replication of oriC plasmids are tolerated on the chromosome.
- Author
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Dziadek J, Rajagopalan M, Parish T, Kurepina N, Greendyke R, Kreiswirth BN, and Madiraju MV
- Subjects
- Base Sequence, DNA Transposable Elements, Molecular Sequence Data, Bacterial Proteins genetics, Chromosomes, Bacterial, DNA-Binding Proteins genetics, Mutation, Mycobacterium tuberculosis genetics, Plasmids, Replication Origin
- Abstract
The origin of replication (oriC) region in some clinical strains of Mycobacterium tuberculosis is a hot spot for IS6110 elements. To understand how clinical strains with insertions in oriC can replicate their DNA, we characterized the oriC regions of some clinical strains. Using a plasmid-based oriC-dependent replication assay, we showed that IS6110 insertions that disrupted the DnaA box sequence CCGTTCACA abolished oriC activity in M. tuberculosis. Furthermore, by using a surface plasmon resonance technique we showed that purified M. tuberculosis DnaA protein binds native but not mutant DnaA box sequence, suggesting that stable interactions of the DnaA protein with the CCGTTCACA DnaA box are crucial for replication of oriC plasmids in vivo. Replacement by homologous recombination of the CCGTTCACA DnaA box sequence of the laboratory strain M. tuberculosis H37Ra with a mutant sequence did not result in nonviability. Together, these results suggest that M. tuberculosis strains have evolved mechanisms to tolerate mutations in the oriC region and that functional requirements for M. tuberculosis oriC replication are different for chromosomes and plasmids.
- Published
- 2002
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24. Modulation of Mycobacterium tuberculosis DnaA protein-adenine-nucleotide interactions by acidic phospholipids.
- Author
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Yamamoto K, Muniruzzaman S, Rajagopalan M, and Madiraju MV
- Subjects
- Adenosine Diphosphate metabolism, Adenosine Triphosphate metabolism, Bacterial Proteins genetics, DNA Replication, DNA-Binding Proteins genetics, Hydrogen-Ion Concentration, Kinetics, Micelles, Mycobacterium tuberculosis genetics, Origin Recognition Complex, Phospholipids chemistry, Protein Binding drug effects, Recombinant Proteins genetics, Recombinant Proteins metabolism, Viral Proteins, Adenine Nucleotides metabolism, Bacterial Proteins metabolism, DNA-Binding Proteins metabolism, Mycobacterium tuberculosis metabolism, Phospholipids pharmacology
- Abstract
The biochemical aspects of the initiation of DNA replication in Mycobacterium tuberculosis are unknown. To understand this process, we overproduced, purified and characterized the recombinant M. tuberculosis DnaA protein. The M. tuberculosis DnaA protein binds the origin of replication (oriC), ATP and ADP, and exhibited weak ATPase activity. ADP, after hydrolysis of ATP, remained strongly associated with DnaA and the exchange of ATP for bound ADP was weak. Vesicles prepared from acidic phospholipids, such as phosphatidylinositol, cardiolipin and phosphatidylglycerol, promoted dissociation of both ADP and ATP, whereas the neutral phospholipid phosphatidylethanolamine did not. The phospholipid-mediated dissociation of ATP was decreased in the presence of the M. tuberculosis oriC, whereas dissociation of ADP was stimulated in the presence of oriC. Acidic phospholipids in micelles, however, were not efficient in dissociating bound nucleotides from DnaA. Together, these results suggest that both polar head groups and membrane bilayer structure play an important role in M. tuberculosis DnaA-adenine-nucleotide interactions. We suggest that initiation of M. tuberculosis oriC involves intimate interactions between DnaA, adenine nucleotides and membrane phospholipids, and the latter helps to ensure that only the ATP form of the DnaA protein interacts continuously with oriC.
- Published
- 2002
- Full Text
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25. The Mycobacterium avium-intracellulare complex dnaB locus and protein intein splicing.
- Author
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Yamamoto K, Low B, Rutherford SA, Rajagopalan M, and Madiraju MV
- Subjects
- Base Sequence, DNA Helicases chemistry, DNA Primers genetics, DnaB Helicases, Genes, Bacterial, Protein Precursors chemistry, Protein Precursors genetics, Protein Precursors metabolism, Protein Splicing, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Bacterial Proteins, DNA Helicases genetics, DNA Helicases metabolism, Mycobacterium avium Complex genetics, Mycobacterium avium Complex metabolism
- Abstract
Intein is a protein sequence mebedded in-frame within a precursor protein and is posttranslationally excised by a self-catalytic protein splicing process. Protein splicing is believed to follow a pathway requiring Cys, Ser, or Thr residues at the intein N-terminus and substitutions other than Cys, Ser, or Thr residues prevent splicing. We show that the dnaB locus in some strains of M. avium-intracellulare complex (MAC) contains intein and that the intein N-terminal amino acid is Ala [Ala-type]. We demonstrate that the M. avium DnaB precursor protein undergoes posttranslational proteolytic processing producing proteins corresponding to the sizes of the DnaB and intein. Further, by Western analysis we detect a protein corresponding to the size of the spliced DnaB protein in MAC cell extracts. Together, these results indicate that the Ala-type MAC DnaB inteins can splice and provide another example that points to an interesting alternative splicing mechanism (Southworth, M. W., Benner, J., and Perler, F. B., EMBO J. 19, 5019-5026, 2000)., (Copyright 2001 Academic Press.)
- Published
- 2001
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26. Development of simple and efficient protocol for isolation of plasmids from mycobacteria using zirconia beads.
- Author
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Madiraju MV, Qin MH, and Rajagopalan M
- Subjects
- Blotting, Southern, Escherichia coli genetics, Microspheres, Time Factors, Transformation, Bacterial, Zirconium, Mycobacterium genetics, Nontuberculous Mycobacteria genetics, Plasmids isolation & purification
- Abstract
A two-step protocol has been developed for isolation of plasmids from recombinant mycobacteria via Escherichia coli. First either mycobacterial primary transformants or propagated cultures were lysed in a mini-bead beater using zirconia beads and the lysate thus obtained was used to transform E. coli recA mutant cells. Secondly, plasmid DNA was isolated from recombinant E. coli cells and analysed. Bead beating times of 2 min for Mycobacterium smegmatis, a rapid grower, and 4 min for M. bovis BCG, a slow grower, were found to be optimal for recovery of plasmid DNA. This protocol was also amenable to other mycobacterial species such as M. avium, M. fortuitum and M. tuberculosis H37Ra. Plasmid recovery from the recombinant M. bovis BCG using this protocol is approximately 300-fold higher than that reported for the electroduction method.
- Published
- 2000
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27. The dnaA gene region of Mycobacterium avium and the autonomous replication activities of its 5' and 3' flanking regions.
- Author
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Madiraju MV, Qin MH, Yamamoto K, Atkinson MA, and Rajagopalan M
- Subjects
- 3' Untranslated Regions genetics, 5' Untranslated Regions genetics, Bacterial Proteins biosynthesis, Base Sequence, Chromosome Mapping, Chromosomes, Bacterial genetics, DNA Replication genetics, DNA Replication physiology, DNA, Bacterial metabolism, Molecular Sequence Data, Mycobacterium bovis genetics, Mycobacterium smegmatis genetics, Mycobacterium tuberculosis genetics, Recombinant Proteins biosynthesis, Replication Origin genetics, Replication Origin physiology, Ribosomal Proteins genetics, Sequence Alignment, Sequence Analysis, DNA, 3' Untranslated Regions metabolism, 5' Untranslated Regions metabolism, Bacterial Proteins genetics, DNA-Binding Proteins genetics, DNA-Directed DNA Polymerase, Mycobacterium avium Complex genetics
- Abstract
A 3.9 kb DNA fragment containing the dnaA gene region of Mycobacterium avium was cloned and its nucleotide sequence was determined. Nucleotide sequence analyses indicated that this region encodes three genes in the order rpmH (ribosomal protein L34), dnaA (the putative initiator protein) and dnaN (the beta subunit of DNA polymerase III). The intergenic regions between the rpmH-dnaA and dnaA-dnaN genes were found to contain several putative DnaA boxes, 9 nt long DnaA protein recognition sequences. A DNA fragment containing the 3' but not the 5' flanking region of the M. avium dnaA gene when cloned in Escherichia coli plasmids, which are otherwise non-replicative in mycobacteria, exhibited autonomous replication activity in M. avium but not in Mycobacterium bovis BCG and Mycobacterium smegmatis. The 5' flanking region of dnaA, on the other hand, exhibited autonomous replication activity in M. bovis BCG but not in M. avium and M. smegmatis. The implications of these results for the understanding of the M. avium oriC replication initiation process are discussed.
- Published
- 1999
- Full Text
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28. Characterization of the functional replication origin of Mycobacterium tuberculosis.
- Author
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Qin MH, Madiraju MV, and Rajagopalan M
- Subjects
- Bacterial Proteins genetics, Base Sequence, DNA, Bacterial, DNA-Binding Proteins genetics, Escherichia coli genetics, Molecular Sequence Data, Mycobacterium smegmatis genetics, Plasmids, Sequence Deletion, Mycobacterium tuberculosis genetics, Replication Origin
- Abstract
The gene order in the 5kb Mycobacterium tuberculosis dnaA region is rnpA, rpmH, dnaA, dnaN and recF. We show that M. tuberculosis DNA fragment containing the dnaA-dnaN intergenic region functioned as oriC, i.e., allowed autonomous replication to otherwise nonreplicative plasmids, in M. tuberculosis H37Ra (H37Ra), avirulent strain of M. tuberculosis, and in Mycobacterium bovis BCG (BCG), a closely related, slowly growing mycobacterial strain. Removal of Escherichia coli plasmid replication origin (ColE1) from the M. tuberculosis oriC plasmids did not abolish their ability to function as oriC, confirming that the autonomous replication activity of these plasmids is due to the presence of the DNA fragment containing the dnaA-dnaN intergenic region. Deletion analyses revealed that the minimal oriC DNA fragment is 814bp. The copy number of M. tuberculosis oriC plasmids containing ColE1 ori relative to chromosomal oriC is one and the 5' flanking region of minimal oriC contains features that support stable autonomous replication. The M. tuberculosis oriC did not function in rapidly growing mycobacterial species such as M. smegmatis. M. smegmatis oriC functioned only in M. fortuitum, but not in any of the slowly growing mycobacterial species such as M. tuberculosis and BCG. Together these data suggest that the replication initiation mechanisms in the slowly growing Mycobacteria are similar and probably different from those in the rapidly growing Mycobacteria and vice versa.
- Published
- 1999
- Full Text
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29. Characterization of the oriC region of Mycobacterium smegmatis.
- Author
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Qin MH, Madiraju MV, Zachariah S, and Rajagopalan M
- Subjects
- Bacterial Proteins metabolism, Base Sequence, DNA Replication, DNA, Bacterial biosynthesis, DNA, Bacterial genetics, DNA-Binding Proteins metabolism, Molecular Sequence Data, Mutagenesis, Mycobacterium metabolism, Plasmids, Sequence Deletion, Bacterial Proteins genetics, DNA-Binding Proteins genetics, DNA-Directed DNA Polymerase, Mycobacterium genetics, Replication Origin
- Abstract
A 3.5-kb DNA fragment containing the dnaA region of Mycobacterium smegmatis has been hypothesized to be the chromosomal origin of replication or oriC (M. Rajagopalan et al., J. Bacteriol. 177:6527-6535, 1995). This region included the rpmH gene, the dnaA gene, and a major portion of the dnaN gene as well as the rpmH-dnaA and dnaA-dnaN intergenic regions. Deletion analyses of this region revealed that a 531-bp DNA fragment from the dnaA-dnaN intergenic region was sufficient to exhibit oriC activity, while a 495-bp fragment from the same region failed to exhibit oriC activity. The oriC activities of plasmids containing the 531-bp sequence was less than the activities of those containing the entire dnaA region, suggesting that the regions flanking the 531-bp sequence stimulated oriC activity. The 531-bp region contained several putative nine-nucleotide DnaA-protein recognition sequences [TT(G/C)TCCACA] and a single 11-nucleotide AT-rich cluster. Replacement of adenine with guanine at position 9 in five of the putative DnaA boxes decreased oriC activity. Mutations at other positions in two of the DnaA boxes also decreased oriC activity. Deletion of the 11-nucleotide AT-rich cluster completely abolished oriC activity. These data indicate that the designated DnaA boxes and the AT-rich cluster of the M. smegmatis dnaA-dnaN intergenic region are essential for oriC activity. We suggest that M. smegmatis oriC replication could involve interactions of the DnaA protein with the putative DnaA boxes as well as with the AT-rich cluster.
- Published
- 1997
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30. Interactions of RecF protein with RecO, RecR, and single-stranded DNA binding proteins reveal roles for the RecF-RecO-RecR complex in DNA repair and recombination.
- Author
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Hegde SP, Qin MH, Li XH, Atkinson MA, Clark AJ, Rajagopalan M, and Madiraju MV
- Subjects
- Bacterial Proteins metabolism, DNA, Bacterial metabolism, DNA-Binding Proteins metabolism, Escherichia coli genetics, Escherichia coli metabolism, Recombination, Genetic, Bacterial Proteins genetics, DNA Repair, DNA, Bacterial genetics, DNA-Binding Proteins genetics, Escherichia coli Proteins
- Abstract
The products of the recF, recO, and recR genes are thought to interact and assist RecA in the utilization of single-stranded DNA precomplexed with single-stranded DNA binding protein (Ssb) during synapsis. Using immunoprecipitation, size-exclusion chromatography, and Ssb protein affinity chromatography in the absence of any nucleotide cofactors, we have obtained the following results: (i) RecF interacts with RecO, (ii) RecF interacts with RecR in the presence of RecO to form a complex consisting of RecF, RecO, and RecR (RecF-RecO-RecR); (iii) RecF interacts with Ssb protein in the presence of RecO. These data suggested that RecO mediates the interactions of RecF protein with RecR and with Ssb proteins. Incubation of RecF, RecO, RecR, and Ssb proteins resulted in the formation of RecF-RecO-Ssb complexes; i.e., RecR was excluded. Preincubation of RecF, RecO, and RecR proteins prior to addition of Ssb protein resulted in the formation of complexes consisting of RecF, RecO, RecR, and Ssb proteins. These data suggest that one role of RecF is to stabilize the interaction of RecR with RecO in the presence of Ssb protein. Finally, we found that interactions of RecF with RecO are lost in the presence of ATP. We discuss these results to explain how the RecF-RecO-RecR complex functions as an anti-Ssb factor.
- Published
- 1996
- Full Text
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31. Preferential binding of Escherichia coli RecF protein to gapped DNA in the presence of adenosine (gamma-thio) triphosphate.
- Author
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Hegde SP, Rajagopalan M, and Madiraju MV
- Subjects
- Adenosine Triphosphate pharmacology, Binding, Competitive, DNA, Viral metabolism, Protein Binding, Adenosine Triphosphate analogs & derivatives, Bacterial Proteins metabolism, DNA metabolism, DNA, Single-Stranded metabolism, DNA-Binding Proteins metabolism, Escherichia coli chemistry, Escherichia coli Proteins
- Abstract
Escherichia coli RecF protein binds, but does not hydrolyze, ATP. To determine the role that ATP binding to RecF plays in RecF protein-mediated DNA binding, we have determined the interaction between RecF protein and single-stranded (ss)DNA, double-stranded (ds)DNA, and dsDNA containing ssDNA regions (gapped [g]DNA) either alone or in various combinations both in the presence and in the absence of adenosine (gamma-thio) triphosphate, gamma-S-ATP, a nonhydrolyzable ATP analog. Protein-DNA complexes were analyzed by electrophoresis on agarose gels and visualized by autoradiography. The type of protein-DNA complexes formed in the presence of gamma-S-ATP was different with each of the DNA substrates and from those formed in the absence of gamma-S-ATP. Competition experiments with various combinations of DNA substrates indicated that RecF protein preferentially bound gDNA in the presence of gamma-S-ATP, and the order of preference of binding was gDNA > dsDNA > ssDNA. Since gDNA has both ds- and ssDNA components, we suggest that the role for ATP in RecF protein-DNA interactions in vivo is to confer specificity of binding to dsDNA-ssDNA junctions, which is necessary for catalyzing DNA repair and recombination.
- Published
- 1996
- Full Text
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32. Mycobacterium smegmatis dnaA region and autonomous replication activity.
- Author
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Rajagopalan M, Qin MH, Nash DR, and Madiraju MV
- Subjects
- Amino Acid Sequence, Bacterial Proteins genetics, Base Sequence, Cloning, Molecular, DNA, Bacterial genetics, Genes, Bacterial genetics, Molecular Sequence Data, Plasmids genetics, Ribosomal Proteins genetics, Sequence Alignment, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Bacterial Proteins metabolism, DNA Replication genetics, DNA-Binding Proteins metabolism, DNA-Directed DNA Polymerase, Mycobacterium genetics, Replication Origin genetics
- Abstract
Two key elements that are thought to be required for replication initiation in eubacteria are the DnaA protein, a trans-acting factor, and the replication origin, a cis-acting element. As a first step in studying the replication initiation process in mycobacteria, we have isolated a 4-kb chromosomal DNA fragment from Mycobacterium smegmatis that contains the dnaA gene. Nucleotide sequence analysis of this region revealed homologies with the rpmH gene, which codes for the ribosomal protein L34, the dnaA gene, which codes for the replication initiator protein DnaA, and the 5' end of the dnaN gene, which codes for the beta subunit of DNA polymerase III. Further, we provide evidence that when cloned into pUC18, a plasmid that is nonreplicative in M. smegmatis, the DNA fragment containing the dnaA gene and its flanking regions rendered the former capable of autonomous replication in M. smegmatis. We suggest that the M. smegmatis chromosomal origin of replication is located within the 4-kb DNA fragment.
- Published
- 1995
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33. Amplification and cloning of the Mycobacterium tuberculosis dnaA gene.
- Author
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Rajagopalan M, Qin MH, Steingrube VA, Nash DR, Wallace RJ Jr, and Madiraju MV
- Subjects
- Amino Acid Sequence, Cloning, Molecular methods, Conserved Sequence, Cosmids, DNA Primers, DNA Replication, DNA, Bacterial metabolism, Genomic Library, Molecular Sequence Data, Mycobacterium tuberculosis metabolism, Polymerase Chain Reaction methods, Restriction Mapping, Sequence Homology, Amino Acid, Bacterial Proteins biosynthesis, Bacterial Proteins genetics, DNA-Binding Proteins biosynthesis, DNA-Binding Proteins genetics, Genes, Bacterial, Mycobacterium tuberculosis genetics
- Abstract
To identify and subsequently clone the gene encoding the DnaA protein, degenerate oligodeoxyribonucleotide (oligo) primers targeted against two highly conserved domains of the eubacterial DnaA were used to amplify a 780-bp DNA region spanning the two primers from genomic DNA preparations of Mycobacterium tuberculosis (Mt), M. bovis (Mb) and M. avium (Ma). Nucleotide (nt) sequences and deduced amino acid (aa) sequences of these fragments revealed homologies with each other and with the corresponding regions from other bacteria. Using an oligo specific to Mt dnaA as a probe, the Mt genomic DNA cosmid libraries propagated in Escherichia coli were screened and a cosmid DNA clone hybridizing with the oligo was identified. Furthermore, a 5-kb DNA fragment containing the Mt dnaA was subcloned into a pUC18 vector.
- Published
- 1995
- Full Text
- View/download PDF
34. A rapid protocol for isolation of RNA from mycobacteria.
- Author
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Rajagopalan M, Boggaram V, and Madiraju MV
- Subjects
- Bacterial Proteins biosynthesis, Base Sequence, Chaperonin 60, Chaperonins biosynthesis, Chaperonins genetics, Electrophoresis, Agar Gel, Guanidines chemistry, Isothiocyanates chemistry, Molecular Sequence Data, Phenol, Phenols chemistry, Polymerase Chain Reaction, RNA, Messenger analysis, Sonication, Mycobacterium genetics, RNA, Bacterial isolation & purification
- Abstract
Isolation of total cellular RNA from members of mycobacteria has been a labour-intensive task involving large volumes of cells, multiple extractions of cell lysates with phenol-chloroform followed by caesium chloride centrifugation. A simple and rapid procedure is reported for isolation of RNA from mycobacteria using as few as 1 x 10(7) cells. The RNA thus isolated when analysed on ethidium bromide gels contained 16S and 23S RNA as major species. Further, the RNA was used for amplification of an internal segment of hsp65 gene by reverse transcription followed by PCR.
- Published
- 1995
- Full Text
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35. recO and recR mutations delay induction of the SOS response in Escherichia coli.
- Author
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Hegde S, Sandler SJ, Clark AJ, and Madiraju MV
- Subjects
- Bacterial Proteins analysis, Bacterial Proteins biosynthesis, Bacterial Proteins metabolism, DNA-Binding Proteins genetics, Escherichia coli radiation effects, Gene Expression Regulation, Bacterial, Mutation, Promoter Regions, Genetic, Recombinant Fusion Proteins biosynthesis, Repressor Proteins analysis, Repressor Proteins metabolism, Serine Endopeptidases analysis, Serine Endopeptidases metabolism, Ultraviolet Rays, beta-Galactosidase biosynthesis, beta-Galactosidase genetics, Bacterial Proteins genetics, Escherichia coli genetics, Escherichia coli Proteins, SOS Response, Genetics genetics
- Abstract
RecF, RecO and RecR, three of the important proteins of the RecF pathway of recombination, are also needed for repair of DNA damage due to UV irradiation. recF mutants are not proficient in cleaving LexA repressor in vivo following DNA damage: therefore they show a delay of induction of the SOS response. In this communication, by measuring the in vivo levels of LexA repressor using anti-LexA antibodies, we show that recO and recR mutant strains are also not proficient in LexA cleavage reactions. In addition, we show that recO and recR mutations delay induction of beta-galactosidase activity expressed from a lexA-regulated promoter following exposure of cells to UV, thus further supporting the idea that recF, recO and recR gene products are needed for induction of the SOS response.
- Published
- 1995
- Full Text
- View/download PDF
36. Evidence for ATP binding and double-stranded DNA binding by Escherichia coli RecF protein.
- Author
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Madiraju MV and Clark AJ
- Subjects
- Adenosine Triphosphate analogs & derivatives, Affinity Labels metabolism, Azides metabolism, Bacterial Proteins radiation effects, Binding, Competitive, Cross-Linking Reagents, DNA-Binding Proteins radiation effects, Ultraviolet Rays, Adenosine Triphosphate metabolism, Bacterial Proteins metabolism, DNA, Bacterial metabolism, DNA-Binding Proteins metabolism, Escherichia coli chemistry, Escherichia coli Proteins
- Abstract
RecF protein is one of the important proteins involved in DNA recombination and repair. RecF protein has been shown to bind single-stranded DNA (ssDNA) in the absence of ATP (T. J. Griffin IV and R. D. Kolodner, J. Bacteriol. 172:6291-6299, 1990; M. V. V. S. Madiraju and A. J. Clark, Nucleic Acids Res. 19:6295-6300, 1991). In the present study, using 8-azido-ATP, a photo-affinity analog of ATP, we show that RecF protein binds ATP and that the binding is specific in the presence of DNA. 8-Azido-ATP photo-cross-linking is stimulated in the presence of DNA (both ssDNA and double-stranded DNA [dsDNA]), suggesting that DNA enhances the affinity of RecF protein for ATP. These data suggest that RecF protein possesses independent ATP- and DNA-binding sites. Further, we find that stable RecF protein-dsDNA complexes are obtained in the presence of ATP or ATP-gamma-S [adenosine-5'-O-(3-thio-triphosphate)]. No other nucleoside triphosphates served as necessary cofactors for dsDNA binding, indicating that RecF is an ATP-dependent dsDNA-binding protein. Since a mutation in a putative phosphate-binding motif of RecF protein results in a recF mutant phenotype (S. J. Sandler, B. Chackerian, J. T. Li, and A. J. Clark, Nucleic Acids Res. 20:839-845, 1992), we suggest on the basis of our data that the interactions of RecF protein with ATP, with dsDNA, or with both are physiologically important for understanding RecF protein function in vivo.
- Published
- 1992
- Full Text
- View/download PDF
37. Enzymatic properties of the RecA803 protein, a partial suppressor of recF mutations.
- Author
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Madiraju MV, Lavery PE, Kowalczykowski SC, and Clark AJ
- Subjects
- Adenosine Triphosphatases metabolism, Adenosine Triphosphate metabolism, DNA, Single-Stranded metabolism, DNA-Binding Proteins physiology, Hydrolysis, Kinetics, Rec A Recombinases genetics, Bacterial Proteins genetics, DNA-Binding Proteins genetics, DNA-Binding Proteins metabolism, Rec A Recombinases metabolism, Suppression, Genetic physiology
- Abstract
The RecA803 protein suppresses the recombinational repair defect of recF mutations and displays enhanced joint molecule formation in vitro (Madiraju et al., 1988). To understand the physical basis for these phenomena, the biochemical properties of RecA803 protein were compared with those of the wild-type protein. The RecA803 protein shows greater DNA-dependent ATPase activity than the wild-type protein with either M13 single-stranded (ss) DNA, which contains secondary structure, or double-stranded DNA. This increased activity reflects an enhanced ability of the mutant protein to form active complexes with these DNA molecules rather than an enhanced catalytic turnover activity, because identical kcat values for ATP hydrolysis are obtained when DNA substrates lacking secondary structure are examined. In addition, the ssDNA-dependent ATPase activity of RecA803 protein displays greater resistance to inhibition by SSB (single-stranded DNA binding) protein. These properties of the RecA803 protein are not due to either an increased binding affinity for ssDNA or an increased kinetic lifetime of RecA803 protein-ssDNA complexes, demonstrating that altered protein-DNA stability is not the basis for the enhanced properties of RecA803 protein. However, the nucleation-limited rate of association with ssDNA is more rapid for the RecA803 protein than for wild-type RecA protein. Consequently, we suggest that altered protein-protein interactions may account for the differences between these two proteins. The implications of these results with regard to the partial suppression of recF mutations by recA803 are discussed (Madiraju et al., 1988).
- Published
- 1992
- Full Text
- View/download PDF
38. Effect of RecF protein on reactions catalyzed by RecA protein.
- Author
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Madiraju MV and Clark AJ
- Subjects
- Adenosine Triphosphatases metabolism, Adenosine Triphosphate metabolism, Catalysis, DNA, Bacterial metabolism, DNA, Single-Stranded metabolism, Escherichia coli metabolism, Hydrolysis, Substrate Specificity, Bacterial Proteins metabolism, DNA-Binding Proteins metabolism, Escherichia coli Proteins, Rec A Recombinases metabolism
- Abstract
RecF protein is one of at least three single strand DNA (ssDNA) binding proteins which act in recombination and repair in Escherichia coli. In this paper we show that our RecF protein preparation complexes with ssDNA so as to retard its electrophoretic movement in an agarose gel. The apparent stoichiometry of RecF-ssDNA-binding measured in this way is one RecF molecule for every 15 nucleotides and the binding appears to be cooperative. Interaction of the other two ssDNA-binding proteins, RecA and Ssb proteins, has been studied extensively; so in this paper we begin the study of the interaction of RecF and RecA proteins. We found that the RecF protein preparation inhibits the activity of RecA protein in the formation of joint molecules whether added before or after addition of RecA protein to ssDNA. It, therefore, differs from Ssb protein which stimulates joint molecule formation when added to ssDNA after RecA protein. We found that our RecF protein preparation inhibits two steps prior to joint molecule formation: RecA protein binding to ssDNA and coaggregate formation between ssDNA-RecA complexes and dsDNA. We found that it required a much higher ratio of RecF to RecA protein than normally occurs in vivo to inhibit joint molecule formation. The insight that these data give to the normal functioning of RecF protein is discussed.
- Published
- 1991
- Full Text
- View/download PDF
39. Cloning and preliminary characterization of srf-2020 and srf-801, the recF partial suppressor mutations which map in recA of Escherichia coli K-12.
- Author
-
Wang TC, Madiraju MV, Templin A, and Clark AJ
- Subjects
- Alleles, Chromosome Mapping, Codon, DNA Repair genetics, DNA, Bacterial genetics, DNA, Bacterial radiation effects, Mutation, Restriction Mapping, Ultraviolet Rays, Bacterial Proteins genetics, Cloning, Molecular, DNA-Binding Proteins genetics, Escherichia coli genetics, Escherichia coli Proteins, Genes, Suppressor, Rec A Recombinases genetics
- Abstract
We have located the single nucleotide changes suffered in recA sequence of 2 recF partial suppressor mutations: srf-2020 at codon 121 and srf-801 at codon 257. srf-2020 changes codon 121 from threonine (ACC) to isoleucine (ATC). srf-801 changes codon 257 from glutamine (CAG) to proline (CCG). Consequently these mutations were renamed recA2020 and recA801 respectively. Preliminary characterization of recA2020 revealed that it is transdominant to recA+, like recA803, another recF partial suppressor. Interactions of recA2020 with recA803 were examined using genetic studies. Heterozygotes containing recA2020 and recA803 failed to produce a synergistic suppression effect in suppressing the recF deficiency. Presence of both recA2020 and recA803 mutations in the same recA gene also failed to produce any greater amount of UV resistance to a uvrA6recF143del(recA) strain indicating no interactions between these suppressors.
- Published
- 1991
- Full Text
- View/download PDF
40. Use of recA803, a partial suppressor of recF, to analyze the effects of the mutant Ssb (single-stranded DNA-binding) proteins in vivo and in vitro.
- Author
-
Madiraju MV and Clark AJ
- Subjects
- Adenosine Triphosphatases metabolism, Adenosine Triphosphate metabolism, DNA Repair, DNA, Bacterial metabolism, DNA-Binding Proteins genetics, Escherichia coli radiation effects, Genes, Bacterial, Mutation, Rec A Recombinases genetics, Recombination, Genetic, Transformation, Bacterial, Ultraviolet Rays, DNA, Single-Stranded metabolism, DNA-Binding Proteins metabolism, Escherichia coli genetics, Genes, Suppressor, Rec A Recombinases metabolism
- Abstract
We examined the possibility that the ssb-1 and ssb-113 mutants exert some of their effects by interfering with the normal function of wild-type RecF protein. Consistent with this possibility, we found that recA803, which partially suppresses recF mutations, also partially suppresses both ssb mutations, as detected by an increase in UV resistance. No evidence was obtained for suppression of the defect in lexA regulon inducibility caused by the ssb mutations. Consequently we suggest that suppression occurs by increasing recombinational repair. In vitro tests of Ssb mutant and wild-type proteins revealed that the single-stranded DNA dependent ATPase activity of RecA protein is more susceptible to inhibition than the joint-molecule-forming activity. All three Ssb proteins inhibit the ATPase activity of RecA wild-type protein almost completely while under similar conditions they inhibit the joint-molecule-forming activity only slightly. Both activities of RecA803 protein were found to be less inhibited by the three Ssb proteins than those of RecA wild-type protein. This is consistent with the suppressing ability of recA803. We found no evidence to contradict the previously proposed hypothesis that ssb-1 affects recombinational repair by acting as a weaker form of Ssb protein. We found, however, only very weak evidence that Ssb-113 protein interferes directly with recombinational repair so that the possibility that it interferes with a normal function of RecF protein must remain open.
- Published
- 1990
- Full Text
- View/download PDF
41. Properties of a mutant recA-encoded protein reveal a possible role for Escherichia coli recF-encoded protein in genetic recombination.
- Author
-
Madiraju MV, Templin A, and Clark AJ
- Subjects
- Base Sequence, Chromosome Mapping, Cloning, Molecular, Mutation, Plasmids, Ultraviolet Rays, Bacterial Proteins genetics, Escherichia coli genetics, Rec A Recombinases genetics, Recombination, Genetic
- Abstract
A mutation partially suppressing the UV sensitivity caused by recF143 in a uvrA6 background was located at codon 37 of recA where GTG (valine) became ATG (methionine). This mutation, originally named srf-803, was renamed recA803. Little if any suppression of the recF143 defect in UV induction of a lexA regulon promoter was detected. This led to the hypothesis that a defect in recombination repair of UV damage was suppressed by recA803. The mutant RecA protein (RecA803) was purified and compared with wild-type protein (RecA+) as a catalyst of formation of joint molecules. Under suboptimal conditions, RecA803 produces both a higher rate of formation and a higher yield of joint molecules. The suboptimal conditions tested included addition of single-stranded DNA binding protein to single-stranded DNA prior to addition of RecA. We hypothesize that the ability of RecA803 to overcome interference by single-stranded DNA binding protein is the property that allows recA803 to suppress partially the deficiency in repair caused by recF mutations in the uvrA6 background. Implications of this hypothesis for the function of RecF protein in recombination are discussed.
- Published
- 1988
- Full Text
- View/download PDF
42. Iron-dependent production of a heat-modifiable, 23,000-Mr outer membrane protein in Paracoccus denitrificans.
- Author
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Wee S, Madiraju MV, and Wilkinson BJ
- Subjects
- Catechols biosynthesis, Culture Media, Hot Temperature, Molecular Weight, Bacterial Outer Membrane Proteins biosynthesis, Ferric Compounds pharmacology, Paracoccus metabolism
- Abstract
Production of a 23,000-Mr major outer membrane protein of Paracoccus denitrificans ATCC 13543 was dependent upon the addition of iron to a succinate-salts medium. The 23,000-Mr protein was not produced in an iron-deficient medium, but production of five outer membrane proteins in the 85,000- to 72,000-Mr range and of catechol were induced. The 23,000-Mr protein was not produced in a complex medium even when ferric citrate was added to the medium. Production of the protein was influenced by the carbon source and was decreased by peptone.
- Published
- 1986
- Full Text
- View/download PDF
43. Characterization of basic proteins of bull seminal plasma.
- Author
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Kemme M, Theil R, Madiraju MV, Scheit S, and Scheit KH
- Subjects
- Amino Acids analysis, Animals, Cattle, Chromatography, High Pressure Liquid methods, Chymotrypsin, Electrophoresis, Polyacrylamide Gel methods, Hydrolysis, Immunodiffusion, Male, Trypsin, Proteins analysis, Semen analysis
- Abstract
We have employed high-performance liquid chromatography on reversed phase columns to analyse the major basic proteins from bull seminal plasma. The proteins were separated preparatively and characterized with respect to molecular mass, amino-acid composition as well as by means of immunodiffusion against specific antisera. The following proteins could be identified: bull seminal proteinase inhibitor II (BUSI II), two seminal RNAases, the seminal antimicrobial protein and proteolytic fragments, derived from it, and a hitherto unknown protein P6 of molecular mass 20 000 Da. Another unknown protein, P5, found to be formed during preparation of the basic protein fraction turned out to be a proteolytic fragment of protein P6 with a molecular mass of 8 750 Da for the polypeptide chain. Antisera against the isolated proteins were raised in rabbits and their specificity established. Single radial immunodiffusion was used to determine the concentration of the above basic proteins in bull seminal plasma: BUSI II (0.25 mg/ml), seminal RNAases (6.5 mg/ml) and protein P6 (2.9 mg/ml).
- Published
- 1984
- Full Text
- View/download PDF
44. The major protein of bull seminal plasma is a secretory product of seminal vesicle.
- Author
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Kemme M, Madiraju MV, Krauhs E, Zimmer M, and Scheit KH
- Subjects
- Animals, Cattle, Cell-Free System, Chemical Phenomena, Chemistry, Chromatography, Gel, Chromatography, High Pressure Liquid, Electrophoresis, Polyacrylamide Gel, Immunochemistry, Male, Poly A isolation & purification, Protein Biosynthesis, RNA isolation & purification, RNA, Messenger, Semen analysis, Seminal Plasma Proteins, Prostatic Secretory Proteins, Proteins isolation & purification, Seminal Vesicles metabolism
- Abstract
We isolated the major protein with apparent molecular weight, Mr, 15,000-16,000 from seminal plasma as well as from seminal vesicle secretion of bull and proved by amino acid analysis and tryptic peptide mapping that the two proteins were identical. An antiserum against this major protein was employed to quantitate and identify the major protein in seminal plasma as well as in seminal vesicle secretion. The antiserum did not cross-react with proteins from bovine or human plasma or follicular fluid, respectively. Cell-free translation of poly(A+)RNA isolated from seminal vesicle tissue resulted in formation of one major species with apparent Mr 18,000. Using the anti-major protein antiserum, this major species was specifically immuno absorbed. We thus provided evidence that the major protein component of bull seminal plasma is a secretory protein of seminal vesicles. Furthermore, it appeared that the isolated major protein may be closely related to the protein PDC109, purified from bull seminal plasma and sequenced by Esch et al. (Biochem. Biophys. Res. Commun. 113, 861-867 (1983).
- Published
- 1986
- Full Text
- View/download PDF
45. Effects of temperature, NaCl, and methicillin on penicillin-binding proteins, growth, peptidoglycan synthesis, and autolysis in methicillin-resistant Staphylococcus aureus.
- Author
-
Madiraju MV, Brunner DP, and Wilkinson BJ
- Subjects
- Chloramphenicol pharmacology, Microbial Sensitivity Tests, Penicillin Resistance, Penicillin-Binding Proteins, Staphylococcus aureus drug effects, Staphylococcus aureus growth & development, Temperature, Bacterial Proteins, Bacteriolysis drug effects, Carrier Proteins biosynthesis, Hexosyltransferases, Methicillin pharmacology, Muramoylpentapeptide Carboxypeptidase biosynthesis, Peptidoglycan biosynthesis, Peptidyl Transferases, Sodium Chloride pharmacology, Staphylococcus aureus metabolism
- Abstract
Methicillin-resistant Staphylococcus aureus strains produce a fifth penicillin-binding protein (PBP), PBP 2', with low affinity for beta-lactam antibiotics that is believed to represent a beta-lactam-insensitive peptidoglycan transpeptidase. In an effort to evaluate the adequacy of PBP 2' as an explanation of methicillin resistance, PBP 2' production and the responses of growth and peptidoglycan synthesis to methicillin under different environmental conditions have been compared. In the heterogeneous methicillin-resistant strain DU4916-K7, less PBP 2' was produced at 40 degrees C than at 30 degrees C, but inclusion of 5% (wt/vol) NaCl in the medium at 40 degrees C boosted PBP 2' production and allowed growth of the organism in the presence of 10 micrograms of methicillin per ml. When exponential-phase cultures were challenged with methicillin, growth and peptidoglycan synthesis were much more resistant at 30 degrees C than at 40 degrees C. Inclusion of NaCl in medium rendered growth and peptidoglycan synthesis more methicillin resistant at 40 degrees C. Hence, there was a good correlation between PBP 2' production and methicillin-resistant peptidoglycan synthesis under these conditions. However, PBP 2' production was increased by NaCl at 30 degrees C without markedly affecting the susceptibilities of growth and peptidoglycan synthesis to methicillin. Pregrowth of cells with methicillin, which was expected to boost PBP 2' production, seemed to increase the susceptibilities of growth and peptidoglycan synthesis to methicillin. Patterns of growth and peptidoglycan synthesis susceptibilities to methicillin which were similar to those described above were found in chloramphenicol-inhibited cultures, in which presumably no induction of PBP 2' could occur during the methicillin challenge period. Complex effects were noted in the combination of subinhibitory methicillin and NaCl. Growth of cells in the presence of NaCl stimulated their autolytic activity, which was further increased by growth with subinhibitory methicillin in addition to NaCl. It appears that NaCl enhances methicillin resistance by stimulating PBP 2' production and providing osmotic support but opposes it by stimulating autolytic activity which is exacerbated by the very low cross-linking of peptidoglycan in methicillin-resistant strains grown in the presence of methicillin.
- Published
- 1987
- Full Text
- View/download PDF
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