13 results on '"Maddumage, R."'
Search Results
2. Using genome information to identify the regulation of fruit texture in apple
- Author
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Schaffer, R.J., Johnston, J.W., Chagné, D., Gardiner, S.E., Crowhurst, R.N., Atkinson, R.G., Sutherland, P., Tacken, E., Bowen, J., Gunaseelan, K., Maddumage, R., Pindo, M., Troggio, M., Costa, F., Guillen, F., Guitton, B., Watson, A., Velasco, R., and Tustin, S.
- Published
- 2010
3. A Genomics Approach to Understanding Fruit Characters
- Author
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Schaffer, R. J., Crowhurst, R. N., Hallett, I. C., Atkinson, R. G., Bulley, S. M., Montefiori, M., Matich, A. J., Nangul, A., Currie, A., Allan, A. C., White, A., Annette Richardson, Blackmore, A., Warren, B., Edwards, C., Fullerton, C., Brendolise, C., Hamiaux, C., Chagne, D., Hunter, D., Jensen, D., Souleyre, E. J. F., Boldingh, H. L., Ireland, H., Cooney, J., Burdon, J. M., Mccallum, J. N., Marsh, K. B., Hoeata, K. B., Lin-Wang, K., Popowski, L., Davy, M., Seelye, M., Wohlers, M., Petley, M., Punter, M., Wright, M. A., Beresford, M., Wang, M. Y., Nieuwenhuizen, N. J., Silva, N., Datson, P. M., Sutherland, P. W., Mcatee, P., Sutton, P., Pathirana, R., Maddumage, R., Richter, R., Rebstock, R., Espley, R. V., Feng, R., Winz, R. A., Hellens, R., Prakash, R., Schroder, R., Storey, R., Lowe, R., Baldwin, S., Gunaseelan, K., Olsson, S., Nardozza, S., Jaswinder, S. S., Green, S. A., Harris-Virgin, T., Laing, W. A., Chen, X., Yauk, Y. K., Hanley, Z., and David, K. M.
4. A genomics approach to understanding fruit characters
- Author
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Schaffer, R. J., Crowhurst, R. N., Hallett, I. C., Atkinson, R. G., Bulley, S. M., Montefiori, M., Matich, A. J., Nangul, A., Currie, A., Allan, A. C., White, A., Richardson, A. C., Blackmore, A., Warren, B., Edwards, C., Fullerton, C., Brendolise, C., Hamiaux, C., Chagne, D., Hunter, D., Jensen, D., Souleyre, E. J. F., Boldingh, H. L., Ireland, H., Cooney, J., Burdon, J. M., Mccallum, J. N., Marsh, K. B., Hoeata, K. B., Lin-Wang, K., Popowski, L., Davy, M., Seelye, M., Wohlers, M., Petley, M., Punter, M., Wright, M. A., Beresford, M., Wang, M. Y., Nieuwenhuizen, N. J., Silva, N., Datson, P. M., Sutherland, P. W., Mcatee, P., Sutton, P., Pathirana, R., Maddumage, R., Richter, R., Rebstock, R., Espley, R. V., Feng, R., Winz, R. A., Hellens, R., Prakash, R., Schröder, R., Storey, R., Lowe, R., Baldwin, S., Gunaseelan, K., Olsson, S., Nardozza, S., Sekhon Jaswinder, S., Green, S. A., Harris-Virgin, T., Laing, W. A., Chen, X., Yauk, Y. K., Hanley, Z., and Karine David
5. Impact of single nucleotide polymorphisms (SNPs) in antioxidant-enzyme genes on the concentrations of folate, homocysteine and glutathione in plasma from healthy subjects after folic acid supplementation - a randomized controlled crossover trial.
- Author
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Mansoor MA, Stea TH, Slettan A, Perera E, Maddumage R, Kottahachchi D, Ali DS, Cabo R, and Blomhoff R
- Abstract
Background: One-carbon metabolism links folate and methionine metabolism and this is essential for nucleotide synthesis in the cells. Alterations in one-carbon metabolism are associated with cardiovascular disease (CVD), type 2 diabetes and cancer. Our aim was to investigate whether SNPs in antioxidant-enzyme genes impact the concentrations of folate in serum (s-folate), plasma total homocysteine (p-tHcy) and total glutathione in plasma (p-tGSH) in healthy subjects after supplementation with folic acid., Methods: In a randomized, double blind, crossover study, healthy subjects received 0.8 mg folic acid per day or a placebo for two weeks. Twenty-four male, and sixty-seven female subjects participated in this study. Participants were aged 36.4 ± 14.8 years (mean ± SD). We studied SNPs in six genes by PCR methods. The concentrations of s-folate, p-tHcy and p-tGSH were measured in fasting samples with Cobas and an HPLC-fluorescence method. Student T-tests and ANOVA were used for the statistical calculations., Main Findings: The subjects with SNP (rs4880) in superoxide dismutase (SOD2) gene (CC) allele had higher concentrations of s-folate and lower concentrations of p-tHcy than subjects with (CT + TT) alleles, (p = 0.014 and p = 0.012). Contrary to SOD2 (CC) allele, the subjects with SNP (rs1001179) catalase (CAT) CC allele had lower concentrations of s-folate (p = 0.029), higher concentrations of p-tGSH (0.017) and higher concentrations of p-tHcy before and after folic acid supplementations (p = 0.015, p = 0.017) than the subjects with (CT + TT) allele. Glutathione transferase (theta)1 (GST-T1) genotype was associated with higher concentrations of s-folate than GST-T0 before (p = 0.025) and after folic acid supplementation (p = 0.047). SNP (rs1050450) in glutathione peroxidase (GPX1) had also impact on the concentrations of p-tGSH (p = 0.011) in healthy subjects., Conclusion: SNPs in SOD2 (rs4880), CAT (rs1001179), and GST1 impact the concentrations of s-folate, and p-tHcy in healthy subjects before and after folic acid supplementation. Our findings suggest that SNPs in antioxidant-genes have a role in health and disease by impacting the concentrations of s-folate, p-tHcy and p-tGSH., Competing Interests: Declarations. Competing interests: The authors declare no competing interests., (© 2025. The Author(s).)
- Published
- 2025
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6. The O-methyltransferase gene MdoOMT1 is required for biosynthesis of methylated phenylpropenes in ripe apple fruit.
- Author
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Yauk YK, Chagné D, Tomes S, Matich AJ, Wang MY, Chen X, Maddumage R, Hunt MB, Rowan DD, and Atkinson RG
- Subjects
- Allylbenzene Derivatives, Ethylenes metabolism, Eugenol analogs & derivatives, Eugenol metabolism, Fruit genetics, Gene Expression Regulation, Plant, Isoenzymes genetics, Isoenzymes metabolism, Malus genetics, Methyltransferases genetics, Molecular Sequence Data, Odorants, Phylogeny, Plant Proteins metabolism, Plants, Genetically Modified, Quantitative Trait Loci, Anisoles metabolism, Fruit metabolism, Malus metabolism, Methyltransferases metabolism, Plant Proteins genetics
- Abstract
Phenylpropenes, such as eugenol and trans-anethole, are important aromatic compounds that determine flavour and aroma in many herbs and spices. Some apple varieties produce fruit with a highly desirable spicy/aromatic flavour that has been attributed to the production of estragole, a methylated phenylpropene. To elucidate the molecular basis for estragole production and its contribution to ripe apple flavour and aroma we characterised a segregating population from a Royal Gala (RG, estragole producer) × Granny Smith (GS, non-producer) apple cross. Two quantitative trait loci (QTLs; accounting for 9.2 and 24.8% of the variation) on linkage group (LG) 1 and LG2 were identified that co-located with seven candidate genes for phenylpropene O-methyltransferases (MdoOMT1-7). Of these genes, only expression of MdoOMT1 on LG1 increased strongly with ethylene and could be correlated with increasing estragole production in ripening RG fruit. Transient over-expression in tobacco showed that MdoOMT1 utilised a range of phenylpropene substrates and catalysed the conversion of chavicol to estragole. Royal Gala carried two alleles (MdoOMT1a, MdoOMT1b) whilst GS appeared to be homozygous for MdoOMT1b. MdoOMT1a showed a higher affinity and catalytic efficiency towards chavicol than MdoOMT1b, which could account for the phenotypic variation at the LG1 QTL. Multiple transgenic RG lines with reduced MdoOMT1 expression produced lower levels of methylated phenylpropenes, including estragole and methyleugenol. Differences in fruit aroma could be perceived in these fruit, compared with controls, by sensory analysis. Together these results indicate that MdoOMT1 is required for the production of methylated phenylpropenes in apple and that phenylpropenes including estragole may contribute to ripe apple fruit aroma., (© 2015 The Authors The Plant Journal © 2015 John Wiley & Sons Ltd.)
- Published
- 2015
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7. Crystal structure of kiwellin, a major cell-wall protein from kiwifruit.
- Author
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Hamiaux C, Maddumage R, Middleditch MJ, Prakash R, Brummell DA, Baker EN, and Atkinson RG
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- Actinidia genetics, Amino Acid Sequence, Antigens, Plant genetics, Antigens, Plant metabolism, Cell Wall genetics, Chitin metabolism, Crystallography, X-Ray, Fruit genetics, Hydrogen-Ion Concentration, Models, Molecular, Molecular Sequence Data, Oligosaccharides metabolism, Plant Proteins genetics, Plant Proteins metabolism, Polysaccharides metabolism, Protein Binding, Protein Conformation, Protein Structure, Secondary, Sequence Homology, Amino Acid, Static Electricity, Actinidia metabolism, Antigens, Plant chemistry, Cell Wall metabolism, Fruit metabolism, Plant Proteins chemistry
- Abstract
Kiwellin is a cysteine-rich, cell wall-associated protein with no known structural homologues. It is one of the most abundant proteins in kiwifruit (Actinidia spp.), and has been shown to be recognised by IgE of some patients allergic to kiwifruit. Cleavage of kiwellin into an N-terminal 4 kDa peptide called kissper and a core domain called KiTH is mediated by actinidin in vitro, and isolation of the kissper peptide from green-fleshed kiwifruit extracts suggested it may result from in vivo processing of kiwellin. In solution, kissper is highly flexible and displays pore-forming activity in synthetic lipid-bilayers. We present here the 2.05 Å resolution crystal structure of full-length kiwellin, purified from its native source, Actinidia chinensis (gold-fleshed kiwifruit). The structure confirms the modularity of the protein and the intrinsic flexibility of kissper and reveals that KiTH harbours a double-psi β-barrel fold hooked to an N-terminal β hairpin. Comparisons with structurally-related proteins suggest that a deep gorge located at the protein surface forms a binding site for endogenous ligands., (Copyright © 2014 Elsevier Inc. All rights reserved.)
- Published
- 2014
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8. The AAT1 locus is critical for the biosynthesis of esters contributing to 'ripe apple' flavour in 'Royal Gala' and 'Granny Smith' apples.
- Author
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Souleyre EJ, Chagné D, Chen X, Tomes S, Turner RM, Wang MY, Maddumage R, Hunt MB, Winz RA, Wiedow C, Hamiaux C, Gardiner SE, Rowan DD, and Atkinson RG
- Subjects
- Acetyltransferases metabolism, Acetyltransferases physiology, Chromosome Mapping, Down-Regulation, Genetic Association Studies, Genetic Linkage, Genetic Variation, Malus metabolism, Molecular Sequence Data, Plant Proteins metabolism, Plant Proteins physiology, Plants, Genetically Modified metabolism, Acetyltransferases genetics, Esters metabolism, Malus genetics, Plant Proteins genetics, Quantitative Trait Loci
- Abstract
The 'fruity' attributes of ripe apples (Malus × domestica) arise from our perception of a combination of volatile ester compounds. Phenotypic variability in ester production was investigated using a segregating population from a 'Royal Gala' (RG; high ester production) × 'Granny Smith' (GS; low ester production) cross, as well as in transgenic RG plants in which expression of the alcohol acyl transferase 1 (AAT1) gene was reduced. In the RG × GS population, 46 quantitative trait loci (QTLs) for the production of esters and alcohols were identified on 15 linkage groups (LGs). The major QTL for 35 individual compounds was positioned on LG2 and co-located with AAT1. Multiple AAT1 gene variants were identified in RG and GS, but only two (AAT1-RGa and AAT1-GSa) were functional. AAT1-RGa and AAT1-GSa were both highly expressed in the cortex and skin of ripe fruit, but AAT1 protein was observed mainly in the skin. Transgenic RG specifically reduced in AAT1 expression showed reduced levels of most key esters in ripe fruit. Differences in the ripe fruit aroma could be perceived by sensory analysis. The transgenic lines also showed altered ratios of biosynthetic precursor alcohols and aldehydes, and expression of a number of ester biosynthetic genes increased, presumably in response to the increased substrate pool. These results indicate that the AAT1 locus is critical for the biosynthesis of esters contributing to a 'ripe apple' flavour., (© 2014 The Authors The Plant Journal © 2014 John Wiley & Sons Ltd.)
- Published
- 2014
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9. Diversity and relative levels of actinidin, kiwellin, and thaumatin-like allergens in 15 varieties of kiwifruit (Actinidia).
- Author
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Maddumage R, Nieuwenhuizen NJ, Bulley SM, Cooney JM, Green SA, and Atkinson RG
- Subjects
- Actinidia immunology, Allergens immunology, Amino Acid Sequence, Antigens, Plant immunology, Blotting, Western, Chromatography, Liquid, Cysteine Endopeptidases immunology, Electrophoresis, Polyacrylamide Gel, Mass Spectrometry, Molecular Sequence Data, Plant Proteins immunology, Protein Conformation, Actinidia chemistry, Allergens chemistry, Antigens, Plant chemistry, Cysteine Endopeptidases chemistry, Fruit chemistry, Plant Proteins chemistry
- Abstract
In the last 30 years the incidence of kiwifruit allergy has increased with the three major allergenic proteins being identified as actinidin, kiwellin, and thaumatin-like protein (TLP). We report wide variation in the levels of actinidin and TLP in 15 kiwifruit varieties from the four most widely cultivated Actinidia species. Acidic and basic isoforms of actinidin were identified in Actinidia deliciosa 'Hayward' and Actinidia arguta 'Hortgem Tahi', while only a basic isoform of actinidin was identified in Actinidia chinensis 'Hort16A'. One isoform each of kiwellin and TLP were identified in ripe fruit. The cysteine protease activity of actinidin correlated with protein levels in all species except A. arguta. Protein modeling suggested that modifications to the S2 binding pocket influenced substrate specificity of the A. arguta enzyme. Our results indicate that care is necessary when extrapolating allergenicity results from single varieties to others within the same and between different Actinidia species.
- Published
- 2013
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10. Mapping, complementation, and targets of the cysteine protease actinidin in kiwifruit.
- Author
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Nieuwenhuizen NJ, Maddumage R, Tsang GK, Fraser LG, Cooney JM, De Silva HN, Green S, Richardson KA, and Atkinson RG
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- Actinidia metabolism, Alleles, Chitinases metabolism, Chromosome Mapping, DNA, Complementary, Frameshift Mutation, Gelatin metabolism, Genetic Complementation Test, Molecular Sequence Data, Mutagenesis, Site-Directed, Plant Proteins genetics, Plant Proteins metabolism, Plants, Genetically Modified, Quantitative Trait Loci, Sequence Analysis, DNA, Actinidia genetics, Cysteine Endopeptidases genetics, Cysteine Endopeptidases metabolism
- Abstract
Cysteine proteases (CPs) accumulate to high concentration in many fruit, where they are believed to play a role in fungal and insect defense. The fruit of Actinidia species (kiwifruit) exhibit a range of CP activities (e.g. the Actinidia chinensis variety YellowA shows less than 2% of the activity of Actinidia deliciosa variety Hayward). A major quantitative trait locus for CP activity was mapped to linkage group 16 in a segregating population of A. chinensis. This quantitative trait locus colocated with the gene encoding actinidin, the major acidic CP in ripe Hayward fruit encoded by the ACT1A-1 allele. Sequence analysis indicated that the ACT1A locus in the segregating A. chinensis population contained one functional allele (A-2) and three nonfunctional alleles (a-3, a-4, and a-5) each containing a unique frameshift mutation. YellowA kiwifruit contained two further alleles: a-6, which was nonfunctional because of a large insertion, and a-7, which produced an inactive enzyme. Site-directed mutagenesis of the act1a-7 protein revealed a residue that restored CP activity. Expression of the functional ACT1A-1 cDNA in transgenic plants complemented the natural YellowA mutations and partially restored CP activity in fruit. Two consequences of the increase in CP activity were enhanced degradation of gelatin-based jellies in vitro and an increase in the processing of a class IV chitinase in planta. These results provide new insight into key residues required for CP activity and the in vivo protein targets of actinidin.
- Published
- 2012
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11. Dissecting the role of climacteric ethylene in kiwifruit (Actinidia chinensis) ripening using a 1-aminocyclopropane-1-carboxylic acid oxidase knockdown line.
- Author
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Atkinson RG, Gunaseelan K, Wang MY, Luo L, Wang T, Norling CL, Johnston SL, Maddumage R, Schröder R, and Schaffer RJ
- Subjects
- Actinidia enzymology, Actinidia growth & development, Amino Acid Oxidoreductases metabolism, Cloning, Molecular, Contig Mapping, DNA, Complementary genetics, Ethylenes metabolism, Fruit enzymology, Fruit growth & development, Gene Expression Regulation, Plant, Gene Knockdown Techniques, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Plant Proteins metabolism, Plants, Genetically Modified, Sequence Analysis, DNA, Actinidia genetics, Actinidia physiology, Amino Acid Oxidoreductases genetics, Fruit genetics, Fruit physiology, Plant Growth Regulators metabolism, Plant Proteins genetics
- Abstract
During climacteric fruit ripening, autocatalytic (Type II) ethylene production initiates a transcriptional cascade that controls the production of many important fruit quality traits including flavour production and softening. The last step in ethylene biosynthesis is the conversion of 1-aminocyclopropane-1-carboxylic acid (ACC) to ethylene by the enzyme ACC oxidase (ACO). Ten independent kiwifruit (Actinidia chinensis) lines were generated targeting suppression of fruit ripening-related ACO genes and the fruit from one of these lines (TK2) did not produce detectable levels of climacteric ethylene. Ripening behaviour in a population of kiwifruit at harvest is asynchronous, so a short burst of exogenous ethylene was used to synchronize ripening in TK2 and control fruit. Following such a treatment, TK2 and control fruit softened to an 'eating-ripe' firmness. Control fruit produced climacteric ethylene and softened beyond eating-ripe by 5 d. In contrast, TK2 fruit maintained an eating-ripe firmness for >25 d and total volatile production was dramatically reduced. Application of continuous exogenous ethylene to the ripening-arrested TK2 fruit re-initiated fruit softening and typical ripe fruit volatiles were detected. A 17 500 gene microarray identified 401 genes that changed after ethylene treatment, including a polygalacturonase and a pectate lyase involved in cell wall breakdown, and a quinone oxidoreductase potentially involved in volatile production. Many of the gene changes were consistent with the softening and flavour changes observed after ethylene treatment. However, a surprisingly large number of genes of unknown function were also observed, which could account for the unique flavour and textural properties of ripe kiwifruit.
- Published
- 2011
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12. Heat-induced oxidative activity protects suspension-cultured plant cells from low temperature damage.
- Author
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Allan AC, Maddumage R, Simons JL, Neill SO, and Ferguson IB
- Abstract
A short heat pre-treatment (1 h at 38°C) was found to protect both suspension-cultured apple fruit cells and tobacco cells from cold-induced cell death. Tobacco cells were more sensitive to low temperatures than apple cells, with significant cell death after 48 h at 0 or -2°C. Real-time measurements of H
2 O2 levels during the heat pre-treatment revealed a substantial burst of this reactive oxygen species in both cell types. Real-time and longer-term measurements also showed a large burst of H2 O2 production from tobacco cells, but not apple cells, when exposed to low temperatures. Lower temperatures reduced levels of peroxidase activity (both total and intracellular), with the heat pre-treatment preventing some of the cold-induced reduction of this activity in both apple and tobacco cells. The greater sensitivity to low temperature of the tobacco cells may be related to higher H2 O2 production, with the heat treatment maintaining higher peroxidase activity. The lesser sensitivity of the apple cells may be due to the lack of a H2 O2 burst and maintenance of peroxidase activity by the heat treatment. These results support a role for oxidative metabolism in the beneficial effects of heat in inducing low temperature tolerance.- Published
- 2006
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13. Flow cytometric analysis of tracheary element differentiation in Zinnia elegans cells.
- Author
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Weir IE, Maddumage R, Allan AC, and Ferguson IB
- Subjects
- Asteraceae physiology, Autophagy, Calcium analysis, Cell Differentiation, Cell Membrane physiology, Cell Shape, Cell Size, Cell Survival, Cells, Cultured, Chromatin physiology, Fluorescent Dyes, Hydrogen-Ion Concentration, Microtubules physiology, Oxidative Stress, Plant Leaves chemistry, Plant Leaves physiology, Asteraceae cytology, Flow Cytometry methods, Plant Leaves cytology
- Abstract
Background: Tracheary element (TE) differentiation in single cells in culture isolated from Zinnia elegans leaves involves programmed cell death (PCD) co-ordinated with key morphological developments. We have used flow cytometry to analyze physiological and nuclear changes in the differentiating cells. Flow cytometry allows the identification of subpopulations, thereby removing the obscuring effect of population heterogeneity that occurs with the use of other techniques., Methods: Cell viability, plasma membrane integrity, oxidative activity, intracellular calcium and pH, cell wall thickening, the possible role of microtubule rearrangement, chromatin condensation, and DNA breakdown were followed by flow cytometry from the first stages of TE induction., Results: TE differentiation could be enhanced and made more synchronous by a centrifugation step at 72 h after cell isolation. Size and shape changes were the first changes identified in differentiating cells, and these properties could be used to isolate differentiating populations by back-gating. Chromatin condensation and nDNA breakdown followed patterns characteristic of programmed cell death., Conclusions: We have used flow cytometry to characterize the morphological and physiological changes that occur during TE differentiation, and our findings indicate that this process is a form of autophagic PCD in which microtubule rearrangement appears to play a role.
- Published
- 2005
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