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1. An autosomal genetic linkage map of the sheep genome

Author

Crawford, A.M., Dodds, K.G., Ede, A.J., Pierson, C.A., Montgomery, G.W., Garmonsway, H.G., Beattie, A.E., Davies, K., Maddox, J.F., Kappes, S.W., Stone, R.T., Nguyen, T.C., Penty, J.M., Lord, E.A., Broom, J.E., Buitkamp, J., Schwaiger, W., Epplen, J.T., Matthew, P., Matthews, M.E., Hulme, D.J., Beh, K.J., McGraw, R.A., and Beattie, C.W.

Subjects
Chromosome mapping -- Research, Linkage (Genetics) -- Research, Sheep -- Genetic aspects, Biological sciences
Abstract

The AgResearch International Mapping Flock is a set of nine sheep pedigrees that covers 2070 of the sheep genome. The extensive ovine genetic linkage map covered 246 polymorphic markers in nine three-generation full-sib pedigrees. Unlinked markers showed heterozygous males with autosomal or pseudoautosomal origins. The maximum number of informative meioses for the map was 222, with 140 as an average number per marker.

Published
1995

2. LIST OF CONTRIBUTORS

Author

Albini, B., primary, Adler, B., additional, Adler, H., additional, Ameratunga, R., additional, Anderson, A.O., additional, Andrews, A.E., additional, Arstila, T.P., additional, Bailey, M., additional, Barnes, H.J., additional, Bazin, H., additional, Bertoni, G., additional, Blacklaws, B., additional, Bos, N.A., additional, Brait, M., additional, Butler, J.E., additional, Cahill, R.N.P., additional, Carter, S.D., additional, Cesbron, J.-Y., additional, Charlemagne, J., additional, Charley, B., additional, Cunningham, C., additional, Cukrowska, B., additional, Daha, M.R., additional, Dammers, P.M., additional, Deenen, G.J., additional, Defresne, M.P., additional, Delhem, N., additional, Demaries, S.L., additional, Desmecht, D., additional, Dijkstra, C.D., additional, Ellis, A.E., additional, Fatzer, R., additional, Felsburg, P.J., additional, Fletcher, O.J., additional, Fluri, A., additional, Foss, D.L., additional, Gianello, P., additional, Giger, U., additional, Goddeeris, B., additional, Govaerts, A., additional, Grant, C.K., additional, Greiner, D.L., additional, Griebel, P.J., additional, Grimholt, U., additional, Groen, H., additional, Hague, B., additional, Haig, D., additional, Hala, K., additional, Hamers, R., additional, Hanken, R.J., additional, Hannant, D., additional, Harbour, D.A., additional, Harlan, J., additional, Hawken, R.J., additional, Hein, W.R., additional, Heinen, E., additional, Helfand, S.C., additional, Hermann, T., additional, Høgåsen, K., additional, Hogenesch, H., additional, Hordvik, I., additional, Horohov, D.W., additional, Howard, C., additional, Hünig, T., additional, Husband, A., additional, Hüttner, S.W., additional, Hylkema, M.N., additional, Ingram, G.A., additional, Ishiguro, N., additional, Jakowlew, S.B., additional, Jeurissen, S.H.M., additional, Joosten, E., additional, Jørgensen, T., additional, Jungi, T.W., additional, Kaplan, M.H., additional, Kaufman, J., additional, Kimpton, W.G., additional, Knight, K.L., additional, Koch, C., additional, Komatsu, M., additional, Koppenheffer, T.L., additional, Krakowka, G.S., additional, Kroese, F.G.M., additional, Landsverk, T., additional, Lanning, D., additional, Latinne, D., additional, Leblond, V., additional, Leutenegger, C., additional, Levy, J.K., additional, Lewin, H., additional, Lie, Ø., additional, Lillehoj, H.S., additional, Llanes, D., additional, Lumsden, J.S., additional, Lunn, D.P., additional, Lunney, J., additional, Lutz, H., additional, MacHugh, N., additional, Maddox, J.F., additional, Mage, R.G., additional, Martin, H.M., additional, McClure, S., additional, McConnell, T.J., additional, McCormack, W.T., additional, McCullagh, P.P., additional, McKeever, D., additional, Mertens, B., additional, Miller, N.W., additional, Modiano, J.F., additional, Morgan, B.P., additional, Morizot, D.C., additional, Moutschen, M.P., additional, Murtaugh, M.P., additional, Muyldermans, S., additional, Naessens, J., additional, Nash, A.D., additional, Nguyen, T.C., additional, Nieuwenhuis, P., additional, Obexer-Ruff, G., additional, Pabst, R., additional, Pastoret, P.P., additional, Pedersen, N.C., additional, Pertile, T.L., additional, Pescovitz, M.D., additional, Peterhans, E., additional, Pilstöm, L., additional, Plachy, J., additional, Press, C. McL., additional, Pu, R., additional, Ramamoorthy, C., additional, Ratcliffe, M.J.H., additional, Rautenschlein, S., additional, Reinacher, M., additional, Ritchey, J.W., additional, Robertsen, B., additional, Rodkey, L.S., additional, Rombout, J.H.W.M., additional, Roth, J., additional, Rothkötter, H.J., additional, Rozing, J., additional, Schat, K.A., additional, Seto, A., additional, Sharar, S., additional, Sharma, J.M., additional, Sinkora, J., additional, Sittisombut, N., additional, Soares, M., additional, Sopp, P., additional, Stokes, C.R., additional, Suter, M., additional, Tabel, H., additional, Tatner, M.F., additional, Tissot, R.G., additional, Tlaskalová-Hogenová, H., additional, Toivanen, P., additional, Tompkins, M.B., additional, Tompkins, W.A.F., additional, Torres-Nagel, N.E., additional, Tournefier, A., additional, Trebichavsky, I., additional, Tucker, E., additional, Urbain, J., additional, Vainio, O., additional, van den Berg, R.H., additional, van den Berg, T.K., additional, van den Broeke, A., additional, van der Meide, P., additional, Vandevelde, M., additional, van Rees, E.P., additional, Vögeli, P., additional, Wagner, J.L., additional, Wakenell, P.S., additional, Watson, D., additional, Weinstein, P.D., additional, Werner, E.R., additional, Westermann, J., additional, Whalen, B.J., additional, Willett, B.J., additional, Winkelstein, J.A., additional, Winn, R., additional, Yamamoto, J.K., additional, Young, A.J., additional, and Zurbriggen, A., additional

Published
1998
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4. The sheep genome reference sequence: a work in progress

Author

The International Sheep Genomics Consortium, ., Archibald, A.L., Cockett, N.E., Dalrymple, B.P., Faraut, Thomas, Kijas, J.W., Maddox, J.F., McEwan, J.C., Hutton Oddy, V., Raadsma, H.W., Wade, C., Wang, J., Wang, W., Xun, X., The International Sheep Genomics Consortium, Partenaires INRAE, The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Utah State University (USU), Livestock Industries, Laboratoire de Génétique Cellulaire (LGC), Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, University of Melbourne, Invermay Agricultural Centre, AgResearch Ltd, School of Environmental and Rural Science, University of New England (UNE), Faculty of Veterinary Science, The University of Sydney, Beijing Genomics Institute [Shenzhen] (BGI), and Institute of Zoology

Subjects
sheep, [SDV]Life Sciences [q-bio], sequence, reference, genome, ovis aries
Abstract

Chantier qualité GA; International audience; Until recently, the construction of a reference genome was performed using Sanger sequencing alone. The emergence of next-generation sequencing platforms now means reference genomes may incorporate sequence data generated from a range of sequencing platforms, each of which have different read length, systematic biases and mate-pair characteristics. The objective of this review is to inform the mammalian genomics community about the experimental strategy being pursued by the International Sheep Genomics Consortium (ISGC) to construct the draft reference genome of sheep (Ovis aries). Component activities such as data generation, sequence assembly and annotation are described, along with information concerning the key researchers performing the work. This aims to foster future participation from across the research community through the coordinated activities of the consortium. The review also serves as a ‘marker paper’ by providing information concerning the pre-publication release of the reference genome. This ensures the ISGC adheres to the framework for data sharing established at the recent Toronto International Data Release Workshop and provides guidelines for data users.

Published
2010

5. Molecular Cytogenetics and Gene Mapping in Sheep (Ovis aries, 2n = 54)

Author

Goldammer, T., Di Meo, G.P., Luhken, G., Drögemüller, Cord, Wu, C.H., Kijas, J., Dalrymple, B.P., Nicholas, F.W., Maddox, J.F., Iannuzzi, L., and Cockett, N.E.

Subjects
Chromosome structure, Genome analysis, Linkage mapping, QTL, Sheep cytogenetic map, 630 Agriculture, 590 Animals (Zoology)
Abstract

The development of a completely annotated sheep genome sequence is a key need for understanding the phylogenetic relationships and genetic diversity among the many different sheep breeds worldwide and for identifying genes controlling economically and physiologically important traits. The ovine genome sequence assembly will be crucial for developing optimized breeding programs based on highly productive, healthy sheep phenotypes that are adapted to modern breeding and production conditions. Scientists and breeders around the globe have been contributing to this goal by generating genomic and cDNA libraries, performing genome-wide and trait-associated analyses of polymorphism, expression analysis, genome sequencing, and by developing virtual and physical comparative maps. The International Sheep Genomics Consortium (ISGC), an informal network of sheep genomics researchers, is playing a major role in coordinating many of these activities. In addition to serving as an essential tool for monitoring chromosome abnormalities in specific sheep populations, ovine molecular cytogenetics provides physical anchors which link and order genome regions, such as sequence contigs, genes and polymorphic DNA markers to ovine chromosomes. Likewise, molecular cytogenetics can contribute to the process of defining evolutionary breakpoints between related species. The selective expansion of the sheep cytogenetic map, using loci to connect maps and identify chromosome bands, can substantially contribute to improving the quality of the annotated sheep genome sequence and will also accelerate its assembly. Furthermore, identifying major morphological chromosome anomalies and micro-rearrangements, such as gene duplications or deletions, that might occur between different sheep breeds and other Ovis species will also be important to understand the diversity of sheep chromosome structure and its implications for cross-breeding. To date, 566 loci have been assigned to specific chromosome regions in sheep and the new cytogenetic map is presented as part of this review. This review will also summarize the current cytogenomic status of the sheep genome, describe current activities in the sheep cytogenomics research sector, and will discuss the cytogenomics data in context with other major sheep genomics projects.

Published
2009

6. Linkage mapping of goat ChirUCO, LSCV and SR-CRSP microsatellites in sheep

Author

Maddox, J.F., Schibler, Laurent, Cribiu, E.P., Kang, N., Davies, K.P., Vaiman, Daniel, Unité de recherche Génétique Biochimique et Cytogénétique (LGBC), Institut National de la Recherche Agronomique (INRA), and ProdInra, Migration

Subjects
[SDV.GEN]Life Sciences [q-bio]/Genetics, [SDV.GEN] Life Sciences [q-bio]/Genetics, CARTOGRAPHIE GENETIQUE, ComputingMilieux_MISCELLANEOUS
Abstract

International audience

Published
2000

7. An autosomal genetic linkage map of the sheep genome

Author

Crawford, A.M., Dodds, K.G., Ede, A.J., Pearson, C.A., Garmonsway, H.G., Beattie, A.E., Montgomery, G.W., Nguyen, T.C., Davies, K., Maddox, J.F., Lord, E.A., Matthews, J.M., Beh, K.J., Mcgraw, R.A., Beattie, C.W., ProdInra, Migration, Laboratoire d'Analyse Génétique pour les Espèces Animales (LABOGENA), and Institut National de la Recherche Agronomique (INRA)

Subjects
[SDV] Life Sciences [q-bio], [SDV.GEN]Life Sciences [q-bio]/Genetics, [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics, [SDV]Life Sciences [q-bio], [SDV.GEN] Life Sciences [q-bio]/Genetics, [SDV.GEN.GA] Life Sciences [q-bio]/Genetics/Animal genetics, ComputingMilieux_MISCELLANEOUS
Abstract

24. Conference of ISAG; International audience

Published
1994

8. A genetic linkage map of the sheep genome

Author

CRAWFORD, A.M., DODDS, K.G., Ede, A.J., Pearson, C.A., Garmonsway, H.G., BEATTIE, A.E., NGUYEN, T.C., Maddox, J.F., Lord, E.A., Kappes, S.W., Schwaiger, W., Epplen, J.T., Matthews, J.M., Montgomery, G.W., BEATTIE, C.W., and ProdInra, Migration

Subjects
[SDV] Life Sciences [q-bio], [SDV]Life Sciences [q-bio]
Published
1994

16. Brief Notes.

Author

Beh, K.J., Riffkin, C.D., Davies, K.P., di Ienno, K.L., Maddox, J.F., Kim, K.S., Marklund, S., Rothschild, M.F., Meurs, K.M., Kittleson, M., Spangler, E., Ware, W.A., Womack, J.E., Towbin, J.A., Andrews, A.E., Gill, C.A., Bottema, C.D.K., Maak, S., and Neumann, K.

Subjects
ANIMAL genetics, GENETIC polymorphisms, ANIMAL genome mapping
Abstract

Introduces articles concerning animal genetics. Dinucleotide repeat polymorphism at the ovine loci; Analysis of porcine melanocortin-5 receptor genes; Identification of polymorphisms in head and hinge region of feline cardiac Beta-myosin heavy chain gene; Linkage and physical mapping of sheep perforin gene.

Published
2000
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