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10. The Global Soil Mycobiome consortium dataset for boosting fungal diversity research

Author

Tedersoo, Leho, Mikryukov, Vladimir, Anslan, Sten, Bahram, Mohammad, Khalid, Abdul Nasir, Corrales, Adriana, Agan, Ahto, Vasco-Palacios, Aída-M., Saitta, Alessandro, Antonelli, Alexandre, Rinaldi, Andrea C., Verbeken, Annemieke, Sulistyo, Bobby P., Tamgnoue, Boris, Furneaux, Brendan, Ritter, Camila Duarte, Nyamukondiwa, Casper, Sharp, Cathy, Marín, César, Dai, D. Q., Gohar, Daniyal, Sharmah, Dipon, Biersma, Elisabeth Machteld, Cameron, Erin K., De Crop, Eske, Otsing, Eveli, Davydov, Evgeny A., Albornoz, Felipe E., Brearley, Francis Q., Buegger, Franz, Gates, Genevieve, Zahn, Geoffrey, Bonito, Gregory, Hiiesalu, Indrek, Hiiesalu, Inga, Zettur, Irma, Barrio, Isabel C., Pärn, Jaan, Heilmann-Clausen, Jacob, Ankuda, Jelena, Kupagme, John Y., Sarapuu, Joosep, Maciá-Vicente, Jose G., Fovo, Joseph Djeugap, Geml, József, Alatalo, Juha M., Alvarez-Manjarrez, Julieta, Monkai, Jutamart, Põldmaa, Kadri, Runnel, Kadri, Adamson, Kalev, Bråthen, Kari A., Pritsch, Karin, Tchan, Kassim I., Armolaitis, Kęstutis, Hyde, Kevin D., Newsham, Kevin K., Panksep, Kristel, Adebola, Lateef A., Lamit, Louis J., Saba, Malka, da Silva Cáceres, Marcela E., Tuomi, Maria, Gryzenhout, Marieka, Bauters, Marijn, Bálint, Miklós, Wijayawardene, Nalin, Hagh-Doust, Niloufar, Yorou, Nourou S., Kurina, Olavi, Mortimer, Peter E., Meidl, Peter, Nilsson, R. Henrik, Puusepp, Rasmus, Casique-Valdés, Rebeca, Drenkhan, Rein, Garibay-Orijel, Roberto, Godoy, Roberto, Alfarraj, Saleh, Rahimlou, Saleh, Põlme, Sergei, Dudov, Sergey V., Mundra, Sunil, Ahmed, Talaat, Netherway, Tarquin, Henkel, Terry W., Roslin, Tomas, Fedosov, Vladimir E., Onipchenko, Vladimir G., Yasanthika, W. A. Erandi, Lim, Young Woon, Piepenbring, Meike, Klavina, Darta, Kõljalg, Urmas, and Abarenkov, Kessy

Published
2021
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16. Connecting the multiple dimensions of global soil fungal diversity

Author

Mikryukov, Vladimir, primary, Dulya, Olesya, additional, Zizka, Alexander, additional, Bahram, Mohammad, additional, Hagh-Doust, Niloufar, additional, Anslan, Sten, additional, Prylutskyi, Oleh, additional, Delgado-Baquerizo, Manuel, additional, Maestre, Fernando T., additional, Nilsson, Henrik, additional, Pärn, Jaan, additional, Öpik, Maarja, additional, Moora, Mari, additional, Zobel, Martin, additional, Espenberg, Mikk, additional, Mander, Ülo, additional, Khalid, Abdul Nasir, additional, Corrales, Adriana, additional, Agan, Ahto, additional, Vasco-Palacios, Aída-M., additional, Saitta, Alessandro, additional, Rinaldi, Andrea, additional, Verbeken, Annemieke, additional, Sulistyo, Bobby, additional, Tamgnoue, Boris, additional, Furneaux, Brendan, additional, Duarte Ritter, Camila, additional, Nyamukondiwa, Casper, additional, Sharp, Cathy, additional, Marín, César, additional, Gohar, Daniyal, additional, Klavina, Darta, additional, Sharmah, Dipon, additional, Dai, Dong-Qin, additional, Nouhra, Eduardo, additional, Biersma, Elisabeth Machteld, additional, Rähn, Elisabeth, additional, Cameron, Erin, additional, De Crop, Eske, additional, Otsing, Eveli, additional, Davydov, Evgeny, additional, Albornoz, Felipe, additional, Brearley, Francis, additional, Buegger, Franz, additional, Zahn, Geoffrey, additional, Bonito, Gregory, additional, Hiiesalu, Inga, additional, Barrio, Isabel, additional, Heilmann-Clausen, Jacob, additional, Ankuda, Jelena, additional, Doležal, Jiri, additional, Kupagme, John, additional, Maciá-Vicente, Jose, additional, Djeugap Fovo, Joseph, additional, Geml, József, additional, Alatalo, Juha, additional, Alvarez-Manjarrez, Julieta, additional, Põldmaa, Kadri, additional, Runnel, Kadri, additional, Adamson, Kalev, additional, Bråthen, Kari-Anne, additional, Pritsch, Karin, additional, Tchan Issifou, Kassim, additional, Armolaitis, Kęstutis, additional, Hyde, Kevin, additional, Newsham, Kevin K., additional, Panksep, Kristel, additional, Lateef, Adebola Azeez, additional, Hansson, Linda, additional, Lamit, Louis, additional, Saba, Malka, additional, Tuomi, Maria, additional, Gryzenhout, Marieka, additional, Bauters, Marijn, additional, Piepenbring, Meike, additional, Wijayawardene, Nalin N., additional, Yorou, Nourou, additional, Kurina, Olavi, additional, Mortimer, Peter, additional, Meidl, Peter, additional, Kohout, Petr, additional, Puusepp, Rasmus, additional, Drenkhan, Rein, additional, Garibay-Orijel, Roberto, additional, Godoy, Roberto, additional, Alkahtani, Saad, additional, Rahimlou, Saleh, additional, Dudov, Sergey, additional, Põlme, Sergei, additional, Ghosh, Soumya, additional, Mundra, Sunil, additional, Ahmed, Talaat, additional, Netherway, Tarquin, additional, Henkel, Terry, additional, Roslin, Tomas, additional, Nteziryayo, Vincent, additional, Fedosov, Vladimir, additional, Onipchenko, Vladimir, additional, Yasanthika, Weeragalle Arachchillage Erandi, additional, Lim, Young, additional, Van Nuland, Michael, additional, Soudzilovskaia, Nadejda, additional, Antonelli, Alexandre, additional, Kõljalg, Urmas, additional, Abarenkov, Kessy, additional, and Tedersoo, Leho, additional

Published
2023
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22. Root-associated fungi as determinants of long-term biodiversity effects on ecosystem functioning

Author

Maciá-Vicente, Jose G., Francioli, Davide, Weigelt, Alexandra, Albracht, Cynthia, Barry, Kathryn E., Buscot, François, Ebeling, Anne, Eisenhauer, Nico, Hennecke, Justus, Heintz-Buschart, Anna, van Ruijven, Jasper, Mommer, Liesje, Maciá-Vicente, Jose G., Francioli, Davide, Weigelt, Alexandra, Albracht, Cynthia, Barry, Kathryn E., Buscot, François, Ebeling, Anne, Eisenhauer, Nico, Hennecke, Justus, Heintz-Buschart, Anna, van Ruijven, Jasper, and Mommer, Liesje

Abstract

Ecosystem functioning, and primary plant production in particular, is positively associated with plant diversity across grassland ecosystems, a relationship that strengthens with time. Root-associated fungi are considered important determinants of biodiversity-productivity relationships, but the actual contribution of pathogens, mutualists, and saprotrophs is not understood. We studied the relationships between diversity and composition of root-associated fungal communities and the plant diversity-productivity relationship over time. We characterized by ITS MiSeq amplicon sequencing the fungal communities associated with roots of plants growing in experimental grassland plots of the delta-BEF experiment in Jena (https://doi.org/10.1016/bs.aecr.2019.06.006), which vary in plant community diversity, composition, and age. This study was aimed at better understanding the role of fungi on the effects of biodiversity on ecosystems function, with importance for predicting the consequences of species losses worldwide and managing ecosystems under changing environmental conditions.

Published
2023

23. Connecting the multiple dimensions of global soil fungal diversity

Author

Universidad de Alicante. Departamento de Ecología, Universidad de Alicante. Instituto Multidisciplinar para el Estudio del Medio "Ramón Margalef", Mikryukov, Vladimir, Dulya, Olesya, Zizka, Alexander, Bahram, Mohammad, Hagh-Doust, Niloufar, Anslan, Sten, Prylutskyi, Oleh, Delgado-Baquerizo, Manuel, Maestre, Fernando T., Nilsson, Henrik, Pärn, Jaan, Van Nuland, Michael, Soudzilovskaia, Nadejda A., Antonelli, Alexandre, Kõljalg, Urmas, Abarenkov, Kessy, Tedersoo, Leho, Öpik, Maarja, Moora, Mari, Zobel, Martin, Espenberg, Mikk, Mander, Ülo, Khalid, Abdul Nasir, Corrales, Adriana, Agan, Ahto, Vasco-Palacios, Aída-M., Saitta, Alessandro, Rinaldi, Andrea C., Verbeken, Annemieke, Sulistyo, Bobby P., Tamgnoue, Boris, Furneaux, Brendan, Duarte Ritter, Camila, Nyamukondiwa, Casper, Sharp, Cathy, Marín, César, Gohar, Daniyal, Klavina, Darta, Sharmah, Dipon, Dai, Dong Qin, Nouhra, Eduardo, Biersma, Elisabeth Machteld, Rähn, Elisabeth, Cameron, Erin K., De Crop, Eske, Otsing, Eveli, Davydov, Evgeny A., Albornoz, Felipe E., Brearley, Francis Q., Buegger, Franz, Zahn, Geoffrey, Bonito, Gregory, Hiiesalu, Inga, Barrio, Isabel C., Heilmann-Clausen, Jacob, Ankuda, Jelena, Doležal, Jiri, Kupagme, John Y., Maciá-Vicente, Jose G., Fovo, Joseph Djeugap, Geml, József, Alatalo, Juha M., Alvarez-Manjarrez, Julieta, Põldmaa, Kadri, Runnel, Kadri, Adamson, Kalev, Bråthen, Kari Anne, Pritsch, Karin, Issifou, Kassim Tchan, Armolaitis, Kęstutis, Hyde, Kevin D., Newsham, Kevin K., Panksep, Kristel, Lateef, Adebola A., Hansson, Linda, Lamit, Louis J., Saba, Malka, Tuomi, Maria, Gryzenhout, Marieka, Bauters, Marijn, Piepenbring, Meike, Wijayawardene, Nalin, Yorou, Nourou S., Kurina, Olavi, Mortimer, Peter E., Meidl, Peter, Kohout, Petr, Puusepp, Rasmus, Drenkhan, Rein, Garibay-Orijel, Roberto, Godoy, Roberto, Alkahtani, Saad, Rahimlou, Saleh, Dudov, Sergey V., Põlme, Sergei, Ghosh, Soumya, Mundra, Sunil, Ahmed, Talaat, Netherway, Tarquin, Henkel, Terry W., Roslin, Tomas, Nteziryayo, Vincent, Fedosov, Vladimir E., Onipchenko, Vladimir G., Yasanthika, W.A. Erandi, Lim, Young Woon, Universidad de Alicante. Departamento de Ecología, Universidad de Alicante. Instituto Multidisciplinar para el Estudio del Medio "Ramón Margalef", Mikryukov, Vladimir, Dulya, Olesya, Zizka, Alexander, Bahram, Mohammad, Hagh-Doust, Niloufar, Anslan, Sten, Prylutskyi, Oleh, Delgado-Baquerizo, Manuel, Maestre, Fernando T., Nilsson, Henrik, Pärn, Jaan, Van Nuland, Michael, Soudzilovskaia, Nadejda A., Antonelli, Alexandre, Kõljalg, Urmas, Abarenkov, Kessy, Tedersoo, Leho, Öpik, Maarja, Moora, Mari, Zobel, Martin, Espenberg, Mikk, Mander, Ülo, Khalid, Abdul Nasir, Corrales, Adriana, Agan, Ahto, Vasco-Palacios, Aída-M., Saitta, Alessandro, Rinaldi, Andrea C., Verbeken, Annemieke, Sulistyo, Bobby P., Tamgnoue, Boris, Furneaux, Brendan, Duarte Ritter, Camila, Nyamukondiwa, Casper, Sharp, Cathy, Marín, César, Gohar, Daniyal, Klavina, Darta, Sharmah, Dipon, Dai, Dong Qin, Nouhra, Eduardo, Biersma, Elisabeth Machteld, Rähn, Elisabeth, Cameron, Erin K., De Crop, Eske, Otsing, Eveli, Davydov, Evgeny A., Albornoz, Felipe E., Brearley, Francis Q., Buegger, Franz, Zahn, Geoffrey, Bonito, Gregory, Hiiesalu, Inga, Barrio, Isabel C., Heilmann-Clausen, Jacob, Ankuda, Jelena, Doležal, Jiri, Kupagme, John Y., Maciá-Vicente, Jose G., Fovo, Joseph Djeugap, Geml, József, Alatalo, Juha M., Alvarez-Manjarrez, Julieta, Põldmaa, Kadri, Runnel, Kadri, Adamson, Kalev, Bråthen, Kari Anne, Pritsch, Karin, Issifou, Kassim Tchan, Armolaitis, Kęstutis, Hyde, Kevin D., Newsham, Kevin K., Panksep, Kristel, Lateef, Adebola A., Hansson, Linda, Lamit, Louis J., Saba, Malka, Tuomi, Maria, Gryzenhout, Marieka, Bauters, Marijn, Piepenbring, Meike, Wijayawardene, Nalin, Yorou, Nourou S., Kurina, Olavi, Mortimer, Peter E., Meidl, Peter, Kohout, Petr, Puusepp, Rasmus, Drenkhan, Rein, Garibay-Orijel, Roberto, Godoy, Roberto, Alkahtani, Saad, Rahimlou, Saleh, Dudov, Sergey V., Põlme, Sergei, Ghosh, Soumya, Mundra, Sunil, Ahmed, Talaat, Netherway, Tarquin, Henkel, Terry W., Roslin, Tomas, Nteziryayo, Vincent, Fedosov, Vladimir E., Onipchenko, Vladimir G., Yasanthika, W.A. Erandi, and Lim, Young Woon

Abstract

How the multiple facets of soil fungal diversity vary worldwide remains virtually unknown, hindering the management of this essential species-rich group. By sequencing high-resolution DNA markers in over 4000 topsoil samples from natural and human-altered ecosystems across all continents, we illustrate the distributions and drivers of different levels of taxonomic and phylogenetic diversity of fungi and their ecological groups. We show the impact of precipitation and temperature interactions on local fungal species richness (alpha diversity) across different climates. Our findings reveal how temperature drives fungal compositional turnover (beta diversity) and phylogenetic diversity, linking them with regional species richness (gamma diversity). We integrate fungi into the principles of global biodiversity distribution and present detailed maps for biodiversity conservation and modeling of global ecological processes.

Published
2023

24. Connecting the multiple dimensions of global soil fungal diversity

Author

Mikryukov, Vladimir, Dulya, Olesya, Zizka, Alexander, Bahram, Mohammad, Hagh-Doust, Niloufar, Anslan, Sten, Prylutskyi, Oleh, Delgado-Baquerizo, Manuel, Maestre, Fernando T., Nilsson, Henrik, Pärn, Jaan, Öpik, Maarja, Moora, Mari, Zobel, Martin, Espenberg, Mikk, Mander, Ülo, Khalid, Abdul Nasir, Corrales, Adriana, Agan, Ahto, Vasco-Palacios, Aída-M., Saitta, Alessandro, Rinaldi, Andrea, Verbeken, Annemieke, Sulistyo, Bobby, Tamgnoue, Boris, Furneaux, Brendan, Duarte Ritter, Camila, Nyamukondiwa, Casper, Sharp, Cathy, Marín, César, Gohar, Daniyal, Klavina, Darta, Sharmah, Dipon, Dai, Dong-Qin, Nouhra, Eduardo, Biersma, Elisabeth Machteld, Rähn, Elisabeth, Cameron, Erin, De Crop, Eske, Otsing, Eveli, Davydov, Evgeny, Albornoz, Felipe, Brearley, Francis, Buegger, Franz, Zahn, Geoffrey, Bonito, Gregory, Hiiesalu, Inga, Barrio, Isabel, Heilmann-Clausen, Jacob, Ankuda, Jelena, Doležal, Jiri, Kupagme, John, Maciá-Vicente, Jose, Djeugap Fovo, Joseph, Geml, József, Alatalo, Juha, Alvarez-Manjarrez, Julieta, Põldmaa, Kadri, Runnel, Kadri, Adamson, Kalev, Bråthen, Kari-Anne, Pritsch, Karin, Tchan Issifou, Kassim, Armolaitis, Kęstutis, Hyde, Kevin, Newsham, Kevin K., Panksep, Kristel, Lateef, Adebola Azeez, Hansson, Linda, Lamit, Louis, Saba, Malka, Tuomi, Maria, Gryzenhout, Marieka, Bauters, Marijn, Piepenbring, Meike, Wijayawardene, Nalin N., Yorou, Nourou, Kurina, Olavi, Mortimer, Peter, Meidl, Peter, Kohout, Petr, Puusepp, Rasmus, Drenkhan, Rein, Garibay-Orijel, Roberto, Godoy, Roberto, Alkahtani, Saad, Rahimlou, Saleh, Dudov, Sergey, Põlme, Sergei, Ghosh, Soumya, Mundra, Sunil, Ahmed, Talaat, Netherway, Tarquin, Henkel, Terry, Roslin, Tomas, Nteziryayo, Vincent, Fedosov, Vladimir, Onipchenko, Vladimir, Yasanthika, Weeragalle Arachchillage Erandi, Lim, Young, Van Nuland, Michael, Soudzilovskaia, Nadejda, Antonelli, Alexandre, Kõljalg, Urmas, Abarenkov, Kessy, Tedersoo, Leho, Mikryukov, Vladimir, Dulya, Olesya, Zizka, Alexander, Bahram, Mohammad, Hagh-Doust, Niloufar, Anslan, Sten, Prylutskyi, Oleh, Delgado-Baquerizo, Manuel, Maestre, Fernando T., Nilsson, Henrik, Pärn, Jaan, Öpik, Maarja, Moora, Mari, Zobel, Martin, Espenberg, Mikk, Mander, Ülo, Khalid, Abdul Nasir, Corrales, Adriana, Agan, Ahto, Vasco-Palacios, Aída-M., Saitta, Alessandro, Rinaldi, Andrea, Verbeken, Annemieke, Sulistyo, Bobby, Tamgnoue, Boris, Furneaux, Brendan, Duarte Ritter, Camila, Nyamukondiwa, Casper, Sharp, Cathy, Marín, César, Gohar, Daniyal, Klavina, Darta, Sharmah, Dipon, Dai, Dong-Qin, Nouhra, Eduardo, Biersma, Elisabeth Machteld, Rähn, Elisabeth, Cameron, Erin, De Crop, Eske, Otsing, Eveli, Davydov, Evgeny, Albornoz, Felipe, Brearley, Francis, Buegger, Franz, Zahn, Geoffrey, Bonito, Gregory, Hiiesalu, Inga, Barrio, Isabel, Heilmann-Clausen, Jacob, Ankuda, Jelena, Doležal, Jiri, Kupagme, John, Maciá-Vicente, Jose, Djeugap Fovo, Joseph, Geml, József, Alatalo, Juha, Alvarez-Manjarrez, Julieta, Põldmaa, Kadri, Runnel, Kadri, Adamson, Kalev, Bråthen, Kari-Anne, Pritsch, Karin, Tchan Issifou, Kassim, Armolaitis, Kęstutis, Hyde, Kevin, Newsham, Kevin K., Panksep, Kristel, Lateef, Adebola Azeez, Hansson, Linda, Lamit, Louis, Saba, Malka, Tuomi, Maria, Gryzenhout, Marieka, Bauters, Marijn, Piepenbring, Meike, Wijayawardene, Nalin N., Yorou, Nourou, Kurina, Olavi, Mortimer, Peter, Meidl, Peter, Kohout, Petr, Puusepp, Rasmus, Drenkhan, Rein, Garibay-Orijel, Roberto, Godoy, Roberto, Alkahtani, Saad, Rahimlou, Saleh, Dudov, Sergey, Põlme, Sergei, Ghosh, Soumya, Mundra, Sunil, Ahmed, Talaat, Netherway, Tarquin, Henkel, Terry, Roslin, Tomas, Nteziryayo, Vincent, Fedosov, Vladimir, Onipchenko, Vladimir, Yasanthika, Weeragalle Arachchillage Erandi, Lim, Young, Van Nuland, Michael, Soudzilovskaia, Nadejda, Antonelli, Alexandre, Kõljalg, Urmas, Abarenkov, Kessy, and Tedersoo, Leho

Abstract

How the multiple facets of soil fungal diversity vary worldwide remains virtually unknown, hindering the management of this essential species-rich group. By sequencing high-resolution DNA markers in over 4000 topsoil samples from natural and human-altered ecosystems across all continents, we illustrate the distributions and drivers of different levels of taxonomic and phylogenetic diversity of fungi and their ecological groups. We show the impact of precipitation and temperature interactions on local fungal species richness (alpha diversity) across different climates. Our findings reveal how temperature drives fungal compositional turnover (beta diversity) and phylogenetic diversity, linking them with regional species richness (gamma diversity). We integrate fungi into the principles of global biodiversity distribution and present detailed maps for biodiversity conservation and modeling of global ecological processes.

Published
2023

25. Unraveling the prevalence of soil-borne fungal pathogens in the North China Plain: a global analysis approach

Author

Liu, Mengshuai, Mommer, Liesje, van Ruijven, Jasper, van der Werf, Wopke, Xu, Zhan, Zhang, Fusuo, Song, Chunxu, Maciá-Vicente, Jose G., Liu, Mengshuai, Mommer, Liesje, van Ruijven, Jasper, van der Werf, Wopke, Xu, Zhan, Zhang, Fusuo, Song, Chunxu, and Maciá-Vicente, Jose G.

Abstract

Soil-borne fungal plant pathogens lead to worldwide economic yield losses. However, despite the agricultural importance of the North China Plain (NCP), little is known about the occurrence and severity of soil-borne fungal pathogens that could potentially affect the yields of three main crops in this area: wheat, maize and soybean. By combining searches in public databases, we identified a set of main soil-borne fungal pathogen species potentially affecting crop production in the NCP. We investigated their distribution patterns at three scales: globally, in China and in the NCP, and evaluated how these patterns were determined by a range of variables related to climate, spatial drivers and crop area density of the three crop species. We found 25 main soil-borne fungal pathogens that could potentially affect the yields of wheat, maize and soybean in the NCP. Twenty of these fungal pathogens were prevalent across the globe, and 13 were very frequent in the NCP. Significant positive relationships between pathogen prevalence and crop area density were only found for two specialist pathogens. Our work provides an overview of the main soil-borne fungal pathogens in one of China’s most intensively cultivated regions, shedding light on potential, previously overlooked, fungal threats for agricultural production in the area. This baseline information may contribute to the development of sustainable management strategies aimed at mitigating disease outbreaks caused by soil-borne pathogens in the future.

Published
2023

26. Uncovering the biodiversity of root endophytic fungi in Europe

Author

Delgado, Gregorio, Maciá Vicente, Jose, Delgado, Gregorio, and Maciá Vicente, Jose

Abstract

Extensive sampling of root endophytic fungi across Europe led to the discovery of two novel fungal genera, Endoradiciella and Extremopsis, and the description of six species new to science.

Published
2023

27. Phaeosphaeriaceae translation elongation factor 1-alpha (Tef1) gene, partial cds.

Author

Ashrafi, Samad, Wennrich, Jan Peer, Becker, Yvonne, Maciá Vicente, Jose, Brißke-Rode, Anke, Daub, Matthias, Thünen, Torsten, Dababat, Abdelfattah A., Finckh, Maria R., Stadler, Marc, Maier, Wolfgang, Ashrafi, Samad, Wennrich, Jan Peer, Becker, Yvonne, Maciá Vicente, Jose, Brißke-Rode, Anke, Daub, Matthias, Thünen, Torsten, Dababat, Abdelfattah A., Finckh, Maria R., Stadler, Marc, and Maier, Wolfgang

Published
2023

28. Phaeosphaeriaceae RNA polymerase II second-largest subunit (RPB2) gene, partial cds.

Author

Ashrafi, Samad, Wennrich, Jan Peer, Becker, Yvonne, Maciá Vicente, Jose, Brißke-Rode, Anke, Daub, Matthias, Thünen, Torsten, Dababat, Abdelfattah A., Finckh, Maria R., Stadler, Marc, Maier, Wolfgang, Ashrafi, Samad, Wennrich, Jan Peer, Becker, Yvonne, Maciá Vicente, Jose, Brißke-Rode, Anke, Daub, Matthias, Thünen, Torsten, Dababat, Abdelfattah A., Finckh, Maria R., Stadler, Marc, and Maier, Wolfgang

Published
2023

29. The structure of root-associated fungal communities is related to the long-term effects of plant diversity on productivity

Author

Maciá-Vicente, Jose G., Francioli, Davide, Weigelt, Alexandra, Albracht, Cynthia, Barry, Kathryn E., Buscot, François, Ebeling, Anne, Eisenhauer, Nico, Hennecke, Justus, Heintz-Buschart, Anna, van Ruijven, Jasper, Mommer, Liesje, Maciá-Vicente, Jose G., Francioli, Davide, Weigelt, Alexandra, Albracht, Cynthia, Barry, Kathryn E., Buscot, François, Ebeling, Anne, Eisenhauer, Nico, Hennecke, Justus, Heintz-Buschart, Anna, van Ruijven, Jasper, and Mommer, Liesje

Abstract

Root-associated fungi could play a role in determining both the positive relationship between plant diversity and productivity in experimental grasslands, and its strengthening over time. This hypothesis assumes that specialized pathogenic and mutualistic fungal communities gradually assemble over time, enhancing plant growth more in species-rich than in species-poor plots. To test this hypothesis, we used high-throughput amplicon sequencing to characterize root-associated fungal communities in experimental grasslands of 1 and 15 years of age with varying levels of plant species richness. Specifically, we tested whether the relationship between fungal communities and plant richness and productivity becomes stronger with the age of the experimental plots. Our results showed that fungal diversity increased with plant diversity, but this relationship weakened rather than strengthened over the two time points. Contrastingly, fungal community composition showed increasing associations with plant diversity over time, suggesting a gradual build-up of specific fungal assemblages. Analyses of different fungal guilds showed that these changes were particularly marked in pathogenic fungi, whose shifts in relative abundance are consistent with the pathogen dilution hypothesis in diverse plant communities. Our results suggest that root-associated fungal pathogens play more specific roles in determining the diversity–productivity relationship than other root-associated plant symbionts.

Published
2023

30. Connecting the multiple dimensions of global soil fungal diversity

Author

Tedersoo, Leho, Mikryukov, Vladimir, Zizka, Alexander, Bahram, Mohammad, Hagh-Doust, Niloufar, Anslan, Sten, Prylutskyi, Oleh, Delgado-Baquerizo, Manuel, Maestre, Fernando T., Pärn, Jaan, Öpik, Maarja, Moora, Mari, Zobel, Martin, Espenberg, Mikk, Mander, Ülo, Khalid, Abdul Nasir, Corrales, Adriana, Agan, Ahto, Vasco-Palacios, Aída M., Saitta, Alessandro, Rinaldi, Andrea C., Verbeken, Annemieke, Sulistyo, Bobby P., Tamgnoue, Boris, Furneaux, Brendan, Ritter, Camila Duarte, Nyamukondiwa, Casper, Sharp, Cathy, Marín, César, Gohar, Daniyal, Klavina, Darta, Sharmah, Dipon, Dai, Dong Qin, Nouhra, Eduardo, Biersma, Elisabeth Machteld, Rähn, Elisabeth, Cameron, Erin K., De Crop, Eske, Otsing, Eveli, Davydov, Evgeny A., Albornoz, Felipe E., Brearley, Francis Q., Buegger, Franz, Zahn, Geoffrey, Bonito, Gregory, Hiiesalu, Inga, Barrio, Isabel C., Heilmann-Clausen, Jacob, Ankuda, Jelena, Kupagme, John Y., Maciá-Vicente, Jose G., Fovo, Joseph Djeugap, Geml, József, Alatalo, Juha M., Alvarez-Manjarrez, Julieta, Põldmaa, Kadri, Runnel, Kadri, Adamson, Kalev, Bråthen, Kari Anne, Pritsch, Karin, Tchan, Kassim I., Armolaitis, Kęstutis, Hyde, Kevin D., Newsham, Kevin K., Panksep, Kristel, Lateef, Adebola A., Tiirmann, Liis, Hansson, Linda, Lamit, Louis J., Saba, Malka, Tuomi, Maria, Gryzenhout, Marieka, Bauters, Marijn, Piepenbring, Meike, Wijayawardene, Nalin, Yorou, Nourou S., Kurina, Olavi, Mortimer, Peter E., Meidl, Peter, Kohout, Petr, Nilsson, Rolf Henrik, Puusepp, Rasmus, Drenkhan, Rein, Garibay-Orijel, Roberto, Godoy, Roberto, Alkahtani, Saad, Rahimlou, Saleh, Dudov, Sergey V., Põlme, Sergei, Ghosh, Soumya, Mundra, Sunil, Ahmed, Talaat, Netherway, Tarquin, Henkel, Terry W., Roslin, Tomas, Nteziryayo, Vincent, Fedosov, Vladimir E., Onipchenko, Vladimir G., Erandi Yasanthika, W.A., Lim, Young Woon, Soudzilovskaia, Nadejda A., Antonelli, Alexandre, Kõljalg, Urmas, Abarenkov, Kessy, Tedersoo, Leho, Mikryukov, Vladimir, Zizka, Alexander, Bahram, Mohammad, Hagh-Doust, Niloufar, Anslan, Sten, Prylutskyi, Oleh, Delgado-Baquerizo, Manuel, Maestre, Fernando T., Pärn, Jaan, Öpik, Maarja, Moora, Mari, Zobel, Martin, Espenberg, Mikk, Mander, Ülo, Khalid, Abdul Nasir, Corrales, Adriana, Agan, Ahto, Vasco-Palacios, Aída M., Saitta, Alessandro, Rinaldi, Andrea C., Verbeken, Annemieke, Sulistyo, Bobby P., Tamgnoue, Boris, Furneaux, Brendan, Ritter, Camila Duarte, Nyamukondiwa, Casper, Sharp, Cathy, Marín, César, Gohar, Daniyal, Klavina, Darta, Sharmah, Dipon, Dai, Dong Qin, Nouhra, Eduardo, Biersma, Elisabeth Machteld, Rähn, Elisabeth, Cameron, Erin K., De Crop, Eske, Otsing, Eveli, Davydov, Evgeny A., Albornoz, Felipe E., Brearley, Francis Q., Buegger, Franz, Zahn, Geoffrey, Bonito, Gregory, Hiiesalu, Inga, Barrio, Isabel C., Heilmann-Clausen, Jacob, Ankuda, Jelena, Kupagme, John Y., Maciá-Vicente, Jose G., Fovo, Joseph Djeugap, Geml, József, Alatalo, Juha M., Alvarez-Manjarrez, Julieta, Põldmaa, Kadri, Runnel, Kadri, Adamson, Kalev, Bråthen, Kari Anne, Pritsch, Karin, Tchan, Kassim I., Armolaitis, Kęstutis, Hyde, Kevin D., Newsham, Kevin K., Panksep, Kristel, Lateef, Adebola A., Tiirmann, Liis, Hansson, Linda, Lamit, Louis J., Saba, Malka, Tuomi, Maria, Gryzenhout, Marieka, Bauters, Marijn, Piepenbring, Meike, Wijayawardene, Nalin, Yorou, Nourou S., Kurina, Olavi, Mortimer, Peter E., Meidl, Peter, Kohout, Petr, Nilsson, Rolf Henrik, Puusepp, Rasmus, Drenkhan, Rein, Garibay-Orijel, Roberto, Godoy, Roberto, Alkahtani, Saad, Rahimlou, Saleh, Dudov, Sergey V., Põlme, Sergei, Ghosh, Soumya, Mundra, Sunil, Ahmed, Talaat, Netherway, Tarquin, Henkel, Terry W., Roslin, Tomas, Nteziryayo, Vincent, Fedosov, Vladimir E., Onipchenko, Vladimir G., Erandi Yasanthika, W.A., Lim, Young Woon, Soudzilovskaia, Nadejda A., Antonelli, Alexandre, Kõljalg, Urmas, and Abarenkov, Kessy

Abstract

How the multiple facets of soil fungal diversity vary worldwide remains virtually unknown, hindering the management of this essential species-rich group. By sequencing high-resolution DNA markers in over 4000 topsoil samples from natural and human-altered ecosystems across all continents, we illustrate the distributions and drivers of different levels of taxonomic and phylogenetic diversity of fungi and their ecological groups. We show the impact of precipitation and temperature interactions on fungal local species richness (alpha diversity) across different climates. Our findings reveal how temperature drives fungal compositional turnover (beta diversity) and phylogenetic diversity, linking them with regional species richness (gamma diversity). Our work integrates fungi into the principles of global biodiversity distribution and presents detailed maps for biodiversity conservation and modeling of global ecological processes., How the multiple facets of soil fungal diversity vary worldwide remains virtually unknown, hindering the management of this essential species-rich group. By sequencing high-resolution DNA markers in over 4000 topsoil samples from natural and human-altered ecosystems across all continents, we illustrate the distributions and drivers of different levels of taxonomic and phylogenetic diversity of fungi and their ecological groups. We show the impact of precipitation and temperature interactions on fungal local species richness (alpha diversity) across different climates. Our findings reveal how temperature drives fungal compositional turnover (beta diversity) and phylogenetic diversity, linking them with regional species richness (gamma diversity). Our work integrates fungi into the principles of global biodiversity distribution and presents detailed maps for biodiversity conservation and modeling of global ecological processes. ### Data overview These datasets contain comprehensive estimates of alpha, beta, and gamma diversity. The data are provided in two formats: TIFF (Tagged Image File Format) and GeoPackage formats, which are commonly used to store geospatially-referenced data. Alpha Diversity: `Alpha_S_*` files: These files contain estimates of alpha diversity (local species diversity) for each grid cell of a raster file. `Alpha_AOA_*` files: These files outline the 'Area of Applicability' for the alpha diversity estimates. `Alpha_Uncertainty_*` files: These files contain data related to the uncertainty of the alpha diversity predictions. Uncertainty here represents the range or degree of error associated with the diversity estimates. `Alpha_Hotspots_and_ProtectedAreas` contains information on fungal diversity hotspots and their area under protection (based on IUCN classification). 'Hotspots' are areas with exceptionally high alpha diversity. Beta Diversity: `Beta_*` f

Published
2023

31. The structure of root‐associated fungal communities is related to the long‐term effects of plant diversity on productivity

Author

Maciá‐Vicente, Jose G., primary, Francioli, Davide, additional, Weigelt, Alexandra, additional, Albracht, Cynthia, additional, Barry, Kathryn E., additional, Buscot, François, additional, Ebeling, Anne, additional, Eisenhauer, Nico, additional, Hennecke, Justus, additional, Heintz‐Buschart, Anna, additional, van Ruijven, Jasper, additional, and Mommer, Liesje, additional

Published
2023
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33. Deciphering the role of specialist and generalist plant–microbial interactions as drivers of plant–soil feedback

Author

Semchenko, Marina, Barry, Kathryn E., Vries, Franciska T., Mommer, Liesje, Moora, Mari, Maciá‐Vicente, Jose G., Sub Ecology and Biodiversity, Ecology and Biodiversity, Sub Ecology and Biodiversity, and Ecology and Biodiversity

Subjects
Physiology, generalist microbiota, fungi, food and beverages, Plant Ecology and Nature Conservation, litter decomposition, plant–soil interactions, Plant Science, Plants, PE&RC, Plant Roots, root exudates, Feedback, mycorrhizal fungi, Soil, Rhizosphere, Plantenecologie en Natuurbeheer, functional traits, fungal pathogens, host-specificity, Symbiosis, Phylogeny, Soil Microbiology
Abstract

Feedback between plants and soil microbial communities can be a powerful driver of vegetation dynamics. Plants elicit changes in the soil microbiome that either promote or suppress conspecifics at the same location, thereby regulating population density-dependence and species co-existence. Such effects are often attributed to the accumulation of host-specific antagonistic or beneficial microbiota in the rhizosphere. However, the identity and host-specificity of the microbial taxa involved are rarely empirically assessed. Here we review the evidence for host-specificity in plant-associated microbes and propose that specific plant–soil feedbacks can also be driven by generalists. We outline the potential mechanisms by which generalist microbial pathogens, mutualists and decomposers can generate differential effects on plant hosts and synthesize existing evidence to predict these effects as a function of plant investments into defence, microbial mutualists and dispersal. Importantly, the capacity of generalist microbiota to drive plant–soil feedbacks depends not only on the traits of individual plants but also on the phylogenetic and functional diversity of plant communities. Identifying factors that promote specialization or generalism in plant–microbial interactions and thereby modulate the impact of microbiota on plant performance will advance our understanding of the mechanisms underlying plant–soil feedback and the ways it contributes to plant co-existence.

Published
2022
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38. Global patterns in endemicity and vulnerability of soil fungi

Author

Tedersoo, Leho, primary, Mikryukov, Vladimir, additional, Zizka, Alexander, additional, Bahram, Mohammad, additional, Hagh‐Doust, Niloufar, additional, Anslan, Sten, additional, Prylutskyi, Oleh, additional, Delgado‐Baquerizo, Manuel, additional, Maestre, Fernando T., additional, Pärn, Jaan, additional, Öpik, Maarja, additional, Moora, Mari, additional, Zobel, Martin, additional, Espenberg, Mikk, additional, Mander, Ülo, additional, Khalid, Abdul Nasir, additional, Corrales, Adriana, additional, Agan, Ahto, additional, Vasco‐Palacios, Aída‐M., additional, Saitta, Alessandro, additional, Rinaldi, Andrea C., additional, Verbeken, Annemieke, additional, Sulistyo, Bobby P., additional, Tamgnoue, Boris, additional, Furneaux, Brendan, additional, Ritter, Camila Duarte, additional, Nyamukondiwa, Casper, additional, Sharp, Cathy, additional, Marín, César, additional, Gohar, Daniyal, additional, Klavina, Darta, additional, Sharmah, Dipon, additional, Dai, Dong Qin, additional, Nouhra, Eduardo, additional, Biersma, Elisabeth Machteld, additional, Rähn, Elisabeth, additional, Cameron, Erin K., additional, De Crop, Eske, additional, Otsing, Eveli, additional, Davydov, Evgeny A., additional, Albornoz, Felipe E., additional, Brearley, Francis Q., additional, Buegger, Franz, additional, Zahn, Geoffrey, additional, Bonito, Gregory, additional, Hiiesalu, Inga, additional, Barrio, Isabel C., additional, Heilmann‐Clausen, Jacob, additional, Ankuda, Jelena, additional, Kupagme, John Y., additional, Maciá‐Vicente, Jose G., additional, Fovo, Joseph Djeugap, additional, Geml, József, additional, Alatalo, Juha M., additional, Alvarez‐Manjarrez, Julieta, additional, Põldmaa, Kadri, additional, Runnel, Kadri, additional, Adamson, Kalev, additional, Bråthen, Kari Anne, additional, Pritsch, Karin, additional, Tchan, Kassim I., additional, Armolaitis, Kęstutis, additional, Hyde, Kevin D., additional, Newsham, Kevin K., additional, Panksep, Kristel, additional, Lateef, Adebola A., additional, Tiirmann, Liis, additional, Hansson, Linda, additional, Lamit, Louis J., additional, Saba, Malka, additional, Tuomi, Maria, additional, Gryzenhout, Marieka, additional, Bauters, Marijn, additional, Piepenbring, Meike, additional, Wijayawardene, Nalin, additional, Yorou, Nourou S., additional, Kurina, Olavi, additional, Mortimer, Peter E., additional, Meidl, Peter, additional, Kohout, Petr, additional, Nilsson, Rolf Henrik, additional, Puusepp, Rasmus, additional, Drenkhan, Rein, additional, Garibay‐Orijel, Roberto, additional, Godoy, Roberto, additional, Alkahtani, Saad, additional, Rahimlou, Saleh, additional, Dudov, Sergey V., additional, Põlme, Sergei, additional, Ghosh, Soumya, additional, Mundra, Sunil, additional, Ahmed, Talaat, additional, Netherway, Tarquin, additional, Henkel, Terry W., additional, Roslin, Tomas, additional, Nteziryayo, Vincent, additional, Fedosov, Vladimir E., additional, Onipchenko, Vladimir G., additional, Yasanthika, W. A. Erandi, additional, Lim, Young Woon, additional, Soudzilovskaia, Nadejda A., additional, Antonelli, Alexandre, additional, Kõljalg, Urmas, additional, and Abarenkov, Kessy, additional

Published
2022
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42. Fungal Planet 1043 – 29 June 2020

Author

Crous, P.W., Wingfield, M.J., Chooi, Y.-H., Gilchrist, C.L.M., Lacey, E., Pitt, J.I., Roets, F., Swart, W.J., Cano-Lira, J.F., Valenzuela-Lopez, N., Hubka, V., Shivas, R.G., Stchigel, A.M., Holdom, D.G., Jurjević, Ž., Kachalkin, A.V., Lebel, T., Lock, C., Martín, M.P., Tan, Y.P., Tomashevskaya, M.A., Vitelli, J.S., Baseia, I.G., Bhatt, V.K., Brandrud, T.E., De Souza, J.T., Dima, B., Lacey, H.J., Lombard, L., Johnston, P.R., Morte, A., Papp, V., Rodríguez, A., Rodríguez-Andrade, E., Semwal, K.C., Tegart, L., Abad, Z.G., Akulov, A., Alvarado, P., Alves, A., Andrade, J.P., Arenas, F., Asenjo, C., Ballarà, J., Barrett, M.D., Berná, L.M., Berraf-Tebbal, A., Bianchinotti, M.V., Bransgrove, K., Burgess, T.I., Carmo, F.S., Chávez, R., Čmoková, A., Dearnaley, J.D.W., de A. Santiago, A.L.C.M., Freitas-Neto, J.F., Denman, S., Douglas, B., Dovana, F., Eichmeier, A., Esteve-Raventós, F., Farid, A., Fedosova, A.G., Ferisin, G., Ferreira, R.J., Ferrer, A., Figueiredo, C.N., Figueiredo, Y.F., Reinoso-Fuentealba, C.G., Garrido-Benavent, I., Cañete-Gibas, C.F., Gil-Durán, C., Glushakova, A.M., Gonçalves, M.F.M., González, M., Gorczak, M., Gorton, C., Guard, F.E., Guarnizo, A.L., Guarro, J., Gutiérrez, M., Hamal, P., Hien, L.T., Hocking, A.D., Houbraken, J., Hunter, G.C., Inácio, C.A., Jourdan, M., Kapitonov, V.I., Kelly, L., Khanh, T.N., Kisło, K., Kiss, L., Kiyashko, A., Kolařík, M., Kruse, J., Kubátová, A., Kučera, V., Kučerová, I., Kušan, I., Lee, H.B., Levicán, G., Lewis, A., Liem, N.V., Liimatainen, K., Lim, H.J., Lyons, M.N., Maciá-Vicente, J.G., Magaña-Dueñas, V., Mahiques, R., Malysheva, E.F., Marbach, P.A.S., Marinho, P., Matočec, N., McTaggart, A.R., Mešić, A., Morin, L., Muñoz-Mohedano, J.M., Navarro-Ródenas, A., Nicolli, C.P., Oliveira, R.L., Otsing, E., Ovrebo, C.L., Pankratov, T.A., Paños, A., Paz-Conde, A., Pérez-Sierra, A., Phosri, C., Pintos, Á., Pošta, A., Prencipe, S., Rubio, E., Saitta, A., Sales, L.S., Sanhueza, L., Shuttleworth, L.A., Smith, J., Smith, M.E., Spadaro, D., Spetik, M., Sochor, M., Sochorová, Z., Sousa, J.O., Suwannasai, N., Tedersoo, L., Thanh, H.M., Thao, L.D., Tkalčec, Z., Vaghefi, N., Venzhik, A.S., Verbeken, A., Vizzini, A., Voyron, S., Wainhouse, M., Whalley, A.J.S., Wrzosek, M., Zapata, M., Zeil-Rolfe, I., Groenewald, J.Z., Crous, Pedro W., Groenewald, Johannes Z., Wingfield, Michael J., Roets, Francois, Swart, Wijnand J., Akulov, Alex, Smith, Jason, Lombard, Lorenzo, Wainhouse, Matt, Douglas, Brian, Denman, Sandra, Johnston, Peter R., Jurjević, Željko, Kolařík, Miroslav, Hubka, Vit, Suwannasai, Nuttika, Martín, María P., Phosri, Cherdchai, Whalley, Anthony J.S., Pitt, John I., Lacey, Ernest, Gilchrist, Cameron L.M., Chooi, Yit-Heng, Figueiredo, Cristiane Nascimento, Sales, Lucas Souza, Andrade, Jackeline Pereira, Figueiredo, Yasmim Freitas, De Souza, Jorge Teodoro, Lacey, Heather J., Hocking, Ailsa D., de L. Oliveira, Renan, Ferreira, Renato J., Lúcio, Paulo Sérgio Marinho, Baseia, Iuri G., Glushakova, Anna M., Tomashevskaya, Maria A., Kachalkin, Aleksey V., Maciá-Vicente, Jose G., Gil-Durán, Carlos, Levicán, Gloria, Chávez, Renato, Sanhueza, Loreto, Ferrer, Alonso, Dima, Bálint, Semwal, Kamal C., Papp, Viktor, Brandrud, Tor Erik, Bhatt, Vinod K., Garrido-Benavent, Isaac, Ballarà, Josep, Liimatainen, Kare, Mahiques, Rafael, Pintos, Ángel, González, Marta, Alvarado, Pablo, Rubio, Enrique, Shuttleworth, Lucas A., Lewis, Alex, Gorton, Caroline, Pérez-Sierra, Ana, Thao, Le Dinh, Hien, Le Thu, Van Liem, Nguyen, Thanh, Ha Minh, Khanh, Tran Ngoc, Saitta, Alessandro, Tedersoo, Leho, Otsing, Eveli, Paz-Conde, Aurelia, Kiss, Levente, Vaghefi, Niloofar, Dearnaley, John D.W., Kelly, Lisa, Bransgrove, Kaylene, Rodríguez-Andrade, Ernesto, Cano-Lira, José F., Stchigel, Alberto M., de Freitas Neto, Julimar F., Sousa, Julieth O., Ovrebo, Clark L., Lee, Hyang Burm, Lim, Hyo Jin, de A. Santiago, André Luiz C.M, Nicolli, Camila Primieri, Carmo, Filipe Sandin, Inácio, Carlos Antonio, Marbach, Phellippe Arthur Santos, Kučera, Viktor, Fedosova, Anna G., Sochorová, Zuzana, Sochor, Michal, Pankratov, Timofey A., Reinoso-Fuentealba, Cintia, Bianchinotti, M. Virginia, Lebel, Teresa, Tegart, Lachlan, Verbeken, Annemieke, Gorczak, Michał, Kisło, Kamil, Wrzosek, Marta, Kruse, Julia, Shivas, Roger G., McTaggart, Alistair R., Lyons, Michael N., Dovana, Francesco, Voyron, Samuele, Vizzini, Alfredo, Ferisin, Giuliano, Raventós, Fernando Esteve, Guard, Frances E., Barrett, Matthew D., Farid, Arian, Smith, Matthew E., Lock, Claire, Vitelli, Joseph S., Holdom, David, Tan, Yu Pei, Kušan, Ivana, Matočec, Neven, Pošta, Ana, Tkalčec, Zdenko, Mešić, Armin, Valenzuela-Lopez, Nicomedes, Guarro, Josep, Čmoková, Adéla, Gonçalves, Micael F.M., Alves, Artur, Spetik, Milan, Berraf-Tebbal, Akila, Eichmeier, Ales, andZcaron, Jurjeviandcacute, eljko, Kučerová, Ivana, Kubátová, Alena, Gibas, Connie F.C., Hamal, Petr, Prencipe, Simona, Spadaro, Davide, Houbraken, Jos, Zapata, Mario, Asenjo, Claudia, Gutiérrez, Mónica, Burgess, Treena I., Abad, Z. Gloria, Kiyashko, Anna, Magaña-Dueñas, Viridiana, Rodríguez, Antonio, Navarro-Ródenas, Alfonso, Arenas, Francisco, Guarnizo, Angel Luigi, Morte, Asunción, Berná, Luis Miguel, Paños, Angela, Muñoz-Mohedano, Justo M., Hunter, Gavin C., Zeil-Rolfe, Isabel, Morin, Louise, Jourdan, Mireille, Venzhik, Aleksandra S., Kapitonov, Vladimir I., and Malysheva, Ekaterina F.

Subjects
ITS nrDNA barcodes, LSU, Fungal Planet description sheets, systematics, new taxa, Research Article
Abstract

Novel species of fungi described in this study include those from various countries as follows: Antarctica, Cladosporium arenosum from marine sediment sand. Argentina, Kosmimatamyces alatophylus (incl. Kosmimatamyces gen. nov.) from soil. Australia, Aspergillus banksianus, Aspergillus kumbius, Aspergillus luteorubrus, Aspergillus malvicolor and Aspergillus nanangensis from soil, Erysiphe medicaginis from leaves of Medicago polymorpha, Hymenotorrendiella communis on leaf litter of Eucalyptus bicostata, Lactifluus albopicri and Lactifluus austropiperatus on soil, Macalpinomyces collinsiae on Eriachne benthamii, Marasmius vagus on soil, Microdochium dawsoniorum from leaves of Sporobolus natalensis, Neopestalotiopsis nebuloides from leaves of Sporobolus elongatus, Pestalotiopsis etonensis from leaves of Sporobolus jacquemontii, Phytophthora personensis from soil associated with dying Grevillea mccutcheonii. Brazil, Aspergillus oxumiae from soil, Calvatia baixaverdensis on soil, Geastrum calycicoriaceum on leaf litter, Greeneria kielmeyerae on leaf spots of Kielmeyera coriacea. Chile, Phytophthora aysenensis on collar rot and stem of Aristotelia chilensis. Croatia, Mollisia gibbospora on fallen branch of Fagus sylvatica. Czech Republic, Neosetophoma hnaniceana from Buxus sempervirens. Ecuador, Exophiala frigidotolerans from soil. Estonia, Elaphomyces bucholtzii in soil. France, Venturia paralias from leaves of Euphorbia paralias. India, Cortinarius balteatoindicus and Cortinarius ulkhagarhiensis on leaf litter. Indonesia, Hymenotorrendiella indonesiana on Eucalyptus urophylla leaf litter. Italy, Penicillium taurinense from indoor chestnut mill. Malaysia, Hemileucoglossum kelabitense on soil, Satchmopsis pini on dead needles of Pinus tecunumanii. Poland, Lecanicillium praecognitum on insects’ frass. Portugal, Neodevriesia aestuarina from saline water. Republic of Korea, Gongronella namwonensis from freshwater. Russia, Candida pellucida from Exomias pellucidus, Heterocephalacria septentrionalis as endophyte from Cladonia rangiferina, Vishniacozyma phoenicis from dates fruit, Volvariella paludosa from swamp. Slovenia, Mallocybe crassivelata on soil. South Africa, Beltraniella podocarpi, Hamatocanthoscypha podocarpi, Coleophoma podocarpi and Nothoseiridium podocarpi (incl. Nothoseiridium gen. nov.) from leaves of Podocarpus latifolius, Gyrothrix encephalarti from leaves of Encephalartos sp., Paraphyton cutaneum from skin of human patient, Phacidiella alsophilae from leaves of Alsophila capensis, and Satchmopsis metrosideri on leaf litter of Metrosideros excelsa. Spain, Cladophialophora cabanerensis from soil, Cortinarius paezii on soil, Cylindrium magnoliae from leaves of Magnolia grandiflora, Trichophoma cylindrospora (incl. Trichophoma gen. nov.) from plant debris, Tuber alcaracense in calcareus soil, Tuber buendiae in calcareus soil. Thailand, Annulohypoxylon spougei on corticated wood, Poaceascoma filiforme from leaves of unknown Poaceae. UK, Dendrostoma luteum on branch lesions of Castanea sativa, Ypsilina buttingtonensis from heartwood of Quercus sp. Ukraine, Myrmecridium phragmiticola from leaves of Phragmites australis. USA, Absidia pararepens from air, Juncomyces californiensis (incl. Juncomyces gen. nov.) from leaves of Juncus effusus, Montagnula cylindrospora from a human skin sample, Muriphila oklahomaensis (incl. Muriphila gen. nov.) on outside wall of alcohol distillery, Neofabraea eucalyptorum from leaves of Eucalyptus macrandra, Diabolocovidia claustri (incl. Diabolocovidia gen. nov.) from leaves of Serenoa repens, Paecilomyces penicilliformis from air, Pseudopezicula betulae from leaves of leaf spots of Populus tremuloides. Vietnam, Diaporthe durionigena on branches of Durio zibethinus and Roridomyces pseudoirritans on rotten wood. Morphological and culture characteristics are supported by DNA barcodes.

Published
2020

44. ​Global patterns in endemicity and vulnerability of soil fungi

Author

Tedersoo, Leho, Mikryukov, Vladimir, Zizka, Alexander, Bahram, Mohammad, Hagh-Doust, Niloufar, Anslan, Sten, Prylutskyi, Oleh, Delgado-Baquerizo, Manuel, Maestre, Fernando T., Pärn, Jaan, Öpik, Maarja, Moora, Mari, Zobel, Martin, Espenberg, Mikk, Mander, Ülo, Khalid, Abdul Nasir, Corrales, Adriana, Agan, Ahto, Vasco-Palacios, Aída-M., Saitta, Alessandro, Rinaldi, Andrea C., Verbeken, Annemieke, Sulistyo, Bobby P., Tamgnoue, Boris, Furneaux, Brendan, Ritter, Camila Duarte, Nyamukondiwa, Casper, Sharp, Cathy, Marín, César, Gohar, Daniyal, Klavina, Darta, Sharmah, Dipon, Dai, Dong Qin, Nouhra, Eduardo, Biersma, Elisabeth Machteld, Rähn, Elisabeth, Cameron, Erin K., De Crop, Eske, Otsing, Eveli, Davydov, Evgeny A., Albornoz, Felipe E., Brearley, Francis Q., Buegger, Franz, Zahn, Geoffrey, Bonito, Gregory, Hiiesalu, Inga, Barrio, Isabel C., Heilmann-Clausen, Jacob, Ankuda, Jelena, Kupagme, John Y., Maciá-Vicente, Jose G., Djeugap Fovo, Joseph, Geml, József, Alatalo, Juha M., Alvarez-Manjarrez, Julieta, Põldmaa, Kadri, Runnel, Kadri, Adamson, Kalev, Bråthen, Kari Anne, Pritsch, Karin, Tchan, Kassim I., Armolaitis, Kęstutis, Hyde, Kevin D., Newsham, Kevin K., Panksep, Kristel, Lateef, Adebola A., Tiirmann, Liis, Hansson, Linda, Lamit, Louis J., Saba, Malka, Tuomi, Maria, Gryzenhout, Marieka, Bauters, Marijn, Piepenbring, Meike, Wijayawardene, Nalin, Yorou, Nourou S., Kurina, Olavi, Mortimer, Peter E., Meidl, Peter, Kohout, Petr, Nilsson, R. Henrik, Puusepp, Rasmus, Drenkhan, Rein, Garibay-Orijel, Roberto, Godoy, Roberto, Alkahtani, Saad, Rahimlou, Saleh, Dudov, Sergey V., Põlme, Sergei, Ghosh, Soumya, Mundra, Sunil, Ahmed, Talaat, Netherway, Tarquin, Henkel, Terry W., Roslin, Tomas, Nteziryayo, Vincent, Fedosov, Vladimir E., Onipchenko, Vladimir G., Yasanthika, W.A. Erandi, Lim, Young Woon, Soudzilovskaia, Nadejda A., Antonelli, Alexandre, Kõljalg, Urmas, Abarenkov, Kessy, Tedersoo, Leho, Mikryukov, Vladimir, Zizka, Alexander, Bahram, Mohammad, Hagh-Doust, Niloufar, Anslan, Sten, Prylutskyi, Oleh, Delgado-Baquerizo, Manuel, Maestre, Fernando T., Pärn, Jaan, Öpik, Maarja, Moora, Mari, Zobel, Martin, Espenberg, Mikk, Mander, Ülo, Khalid, Abdul Nasir, Corrales, Adriana, Agan, Ahto, Vasco-Palacios, Aída-M., Saitta, Alessandro, Rinaldi, Andrea C., Verbeken, Annemieke, Sulistyo, Bobby P., Tamgnoue, Boris, Furneaux, Brendan, Ritter, Camila Duarte, Nyamukondiwa, Casper, Sharp, Cathy, Marín, César, Gohar, Daniyal, Klavina, Darta, Sharmah, Dipon, Dai, Dong Qin, Nouhra, Eduardo, Biersma, Elisabeth Machteld, Rähn, Elisabeth, Cameron, Erin K., De Crop, Eske, Otsing, Eveli, Davydov, Evgeny A., Albornoz, Felipe E., Brearley, Francis Q., Buegger, Franz, Zahn, Geoffrey, Bonito, Gregory, Hiiesalu, Inga, Barrio, Isabel C., Heilmann-Clausen, Jacob, Ankuda, Jelena, Kupagme, John Y., Maciá-Vicente, Jose G., Djeugap Fovo, Joseph, Geml, József, Alatalo, Juha M., Alvarez-Manjarrez, Julieta, Põldmaa, Kadri, Runnel, Kadri, Adamson, Kalev, Bråthen, Kari Anne, Pritsch, Karin, Tchan, Kassim I., Armolaitis, Kęstutis, Hyde, Kevin D., Newsham, Kevin K., Panksep, Kristel, Lateef, Adebola A., Tiirmann, Liis, Hansson, Linda, Lamit, Louis J., Saba, Malka, Tuomi, Maria, Gryzenhout, Marieka, Bauters, Marijn, Piepenbring, Meike, Wijayawardene, Nalin, Yorou, Nourou S., Kurina, Olavi, Mortimer, Peter E., Meidl, Peter, Kohout, Petr, Nilsson, R. Henrik, Puusepp, Rasmus, Drenkhan, Rein, Garibay-Orijel, Roberto, Godoy, Roberto, Alkahtani, Saad, Rahimlou, Saleh, Dudov, Sergey V., Põlme, Sergei, Ghosh, Soumya, Mundra, Sunil, Ahmed, Talaat, Netherway, Tarquin, Henkel, Terry W., Roslin, Tomas, Nteziryayo, Vincent, Fedosov, Vladimir E., Onipchenko, Vladimir G., Yasanthika, W.A. Erandi, Lim, Young Woon, Soudzilovskaia, Nadejda A., Antonelli, Alexandre, Kõljalg, Urmas, and Abarenkov, Kessy

Abstract

Fungi are highly diverse organisms, which provide multiple ecosystem services. However, compared with charismatic animals and plants, the distribution patterns and conservation needs of fungi have been little explored. Here we used high-resolution sequencing to assess endemicity patterns, global change vulnerability and conservation priority areas for functional groups of soil fungi based on six global surveys using a high-resolution, long-read metabarcoding approach. We found that the endemicity of all fungi and most functional groups peaks in tropical habitats, including Amazonia, Yucatan, West-Central Africa, Sri Lanka and New Caledonia, with a negligible island effect compared with plants and animals. We also found that fungi are predominantly vulnerable to drought, heat and land cover change, particularly in dry tropical regions with high human population density. Fungal conservation areas of highest priority include herbaceous wetlands, tropical forests and woodlands. We stress that more attention should be focused on the conservation of fungi, especially root symbiotic arbuscular mycorrhizal and ectomycorrhizal fungi in tropical regions as well as unicellular early-diverging groups and macrofungi in general. Given the low overlap between the endemicity of fungi and macroorganisms, but high conservation needs in both groups, detailed analyses on distribution and conservation requirements are warranted for other microorganisms and soil organisms.

Published
2022

46. Nutrient availability does not affect community assembly in root-associated fungi but determines fungal effects on plant growth

Author

Maciá-Vicente, Jose G., Bai, Bing, Qi, Run, Ploch, Sebastian, Breider, Florian, Thines, Marco, Maciá-Vicente, Jose G., Bai, Bing, Qi, Run, Ploch, Sebastian, Breider, Florian, and Thines, Marco

Abstract

Nonmycorrhizal root-colonizing fungi are key determinants of plant growth, driving processes ranging from pathogenesis to stress alleviation. Evidence suggests that they might also facilitate host access to soil nutrients in a mycorrhiza-like manner, but the extent of their direct contribution to plant nutrition is unknown. To study how widespread such capacity is across root-colonizing fungi, we surveyed soils in nutrient-limiting habitats using plant baits to look for fungal community changes in response to nutrient conditions. We established a fungal culture collection and used Arabidopsis thaliana inoculation bioassays to assess the ability of fungi to facilitate host’s growth in the presence of organic nutrients unavailable to plants. Plant baits captured a representation of fungal communities extant in natural habitats and showed that nutrient limitation has little influence on community assembly. Arabidopsis thaliana inoculated with 31 phylogenetically diverse fungi exhibited a consistent fungus-driven growth promotion when supplied with organic nutrients compared to untreated plants. However, direct phosphorus measurement and RNA-seq data did not support enhanced nutrient uptake but rather that growth effects may result from changes in the plant’s immune response to colonization. The widespread and consistent host responses to fungal colonization suggest that distinct, locally adapted nonmycorrhizal fungi affect plant performance across habitats. IMPORTANCE: Recent studies have shown that root-associated fungi that do not engage in classical mycorrhizal associations can facilitate the hosts’ access to nutrients in a mycorrhiza-like manner. However, the generality of this capacity remains to be tested. Root-associated fungi are frequently deemed major determinants of plant diversity and performance, but in the vast majority of cases their ecological roles in nature remain unknown. Assessing how these plant symbionts affect plant productivity, diversity, and f

Published
2022

47. Leptodophora gen. nov. (Helotiales, Leotiomycetes) proposed to accommodate selected root-associated members of the genus Cadophora

Author

Koukol, Ondřej, Maciá-Vicente, Jose G., Koukol, Ondřej, and Maciá-Vicente, Jose G.

Abstract

Cadophora orchidicola, a root-associated asexual species, did not have a clear placement within the paraphyletic genus Cadophora because it was not represented by sequences derived from the type material. Based on four newly obtained molecular marker sequences from the ex-type strain, a new genus, Leptodophora, is proposed, typified with C. orchidicola, as well as new combinations for three recently described and closely related species. In addition, a new species, Collembolispora disimilis, is proposed for a fungus producing phialidic conidiogenous cells and previously treated as Cadophora sp.

Published
2022

50. Global patterns in endemicity and vulnerability of soil fungi

Author

Tedersoo, Leho, Mikryukov, Vladimir, Zizka, Alexander, Bahram, Mohammad, Hagh-Doust, Niloufar, Anslan, Sten, Prylutskyi, Oleh, Delgado-Baquerizo, Manuel, Maestre, Fernando T., Pärn, Jaan, Öpik, Maarja, Moora, Mari, Zobel, Martin, Espenberg, Mikk, Mander, Ülo, Khalid, Abdul Nasir, Corrales, Adriana, Agan, Ahto, Vasco-Palacios, Aída M., Saitta, Alessandro, Rinaldi, Andrea C., Verbeken, Annemieke, Sulistyo, Bobby P., Tamgnoue, Boris, Furneaux, Brendan, Ritter, Camila Duarte, Nyamukondiwa, Casper, Sharp, Cathy, Marín, César, Gohar, Daniyal, Klavina, Darta, Sharmah, Dipon, Dai, Dong Qin, Nouhra, Eduardo, Biersma, Elisabeth Machteld, Rähn, Elisabeth, Cameron, Erin K., De Crop, Eske, Otsing, Eveli, Davydov, Evgeny A., Albornoz, Felipe E., Brearley, Francis Q., Buegger, Franz, Zahn, Geoffrey, Bonito, Gregory, Hiiesalu, Inga, Barrio, Isabel C., Heilmann-Clausen, Jacob, Ankuda, Jelena, Kupagme, John Y., Maciá-Vicente, Jose G., Fovo, Joseph Djeugap, Geml, József, Alatalo, Juha M., Alvarez-Manjarrez, Julieta, Põldmaa, Kadri, Runnel, Kadri, Adamson, Kalev, Bråthen, Kari Anne, Pritsch, Karin, Tchan, Kassim I., Armolaitis, Kęstutis, Hyde, Kevin D., Newsham, Kevin K., Panksep, Kristel, Lateef, Adebola A., Tiirmann, Liis, Hansson, Linda, Lamit, Louis J., Saba, Malka, Tuomi, Maria, Gryzenhout, Marieka, Bauters, Marijn, Piepenbring, Meike, Wijayawardene, Nalin, Yorou, Nourou S., Kurina, Olavi, Mortimer, Peter E., Meidl, Peter, Kohout, Petr, Nilsson, Rolf Henrik, Puusepp, Rasmus, Drenkhan, Rein, Garibay-Orijel, Roberto, Godoy, Roberto, Alkahtani, Saad, Rahimlou, Saleh, Dudov, Sergey V., Põlme, Sergei, Ghosh, Soumya, Mundra, Sunil, Ahmed, Talaat, Netherway, Tarquin, Henkel, Terry W., Roslin, Tomas, Nteziryayo, Vincent, Fedosov, Vladimir E., Onipchenko, Vladimir G., Erandi Yasanthika, W.A., Lim, Young Woon, Soudzilovskaia, Nadejda A., Antonelli, Alexandre, Kõljalg, Urmas, Abarenkov, Kessy, Tedersoo, Leho, Mikryukov, Vladimir, Zizka, Alexander, Bahram, Mohammad, Hagh-Doust, Niloufar, Anslan, Sten, Prylutskyi, Oleh, Delgado-Baquerizo, Manuel, Maestre, Fernando T., Pärn, Jaan, Öpik, Maarja, Moora, Mari, Zobel, Martin, Espenberg, Mikk, Mander, Ülo, Khalid, Abdul Nasir, Corrales, Adriana, Agan, Ahto, Vasco-Palacios, Aída M., Saitta, Alessandro, Rinaldi, Andrea C., Verbeken, Annemieke, Sulistyo, Bobby P., Tamgnoue, Boris, Furneaux, Brendan, Ritter, Camila Duarte, Nyamukondiwa, Casper, Sharp, Cathy, Marín, César, Gohar, Daniyal, Klavina, Darta, Sharmah, Dipon, Dai, Dong Qin, Nouhra, Eduardo, Biersma, Elisabeth Machteld, Rähn, Elisabeth, Cameron, Erin K., De Crop, Eske, Otsing, Eveli, Davydov, Evgeny A., Albornoz, Felipe E., Brearley, Francis Q., Buegger, Franz, Zahn, Geoffrey, Bonito, Gregory, Hiiesalu, Inga, Barrio, Isabel C., Heilmann-Clausen, Jacob, Ankuda, Jelena, Kupagme, John Y., Maciá-Vicente, Jose G., Fovo, Joseph Djeugap, Geml, József, Alatalo, Juha M., Alvarez-Manjarrez, Julieta, Põldmaa, Kadri, Runnel, Kadri, Adamson, Kalev, Bråthen, Kari Anne, Pritsch, Karin, Tchan, Kassim I., Armolaitis, Kęstutis, Hyde, Kevin D., Newsham, Kevin K., Panksep, Kristel, Lateef, Adebola A., Tiirmann, Liis, Hansson, Linda, Lamit, Louis J., Saba, Malka, Tuomi, Maria, Gryzenhout, Marieka, Bauters, Marijn, Piepenbring, Meike, Wijayawardene, Nalin, Yorou, Nourou S., Kurina, Olavi, Mortimer, Peter E., Meidl, Peter, Kohout, Petr, Nilsson, Rolf Henrik, Puusepp, Rasmus, Drenkhan, Rein, Garibay-Orijel, Roberto, Godoy, Roberto, Alkahtani, Saad, Rahimlou, Saleh, Dudov, Sergey V., Põlme, Sergei, Ghosh, Soumya, Mundra, Sunil, Ahmed, Talaat, Netherway, Tarquin, Henkel, Terry W., Roslin, Tomas, Nteziryayo, Vincent, Fedosov, Vladimir E., Onipchenko, Vladimir G., Erandi Yasanthika, W.A., Lim, Young Woon, Soudzilovskaia, Nadejda A., Antonelli, Alexandre, Kõljalg, Urmas, and Abarenkov, Kessy

Abstract

This repository contains the data associated with the paper Tedersoo et al. (2022) Global patterns in endemicity and vulnerability of soil fungi // Global Change Biology. DOI:10.1111/gcb.16398 Fungi are highly diverse organisms and provide a wealth of ecosystem functions. However, distribution patterns and conservation needs of fungi have been very little explored compared to charismatic animals and plants. Here we assess endemicity patterns, global change vulnerability and conservation priority areas for functional groups of soil fungi based on six global surveys using a high-resolution, long-read metabarcoding approach. Endemicity of all fungi and most functional groups peaks in tropical habitats, including Amazonia, Yucatan, West-Central Africa, Sri Lanka and New Caledonia, with a negligible island effect compared with plants and animals. We also found that fungi are vulnerable mostly to drought, heat and land cover change, particularly in dry tropical regions with high human population density. Fungal conservation areas of highest priority include herbaceous wetlands, tropical forests and woodlands. We suggest that there should be more attention focused on the conservation of fungi, especially tropical root symbiotic arbuscular mycorrhizal and ectomycorrhizal fungi, unicellular early-diverging groups and macrofungi in general. Given the low overlap between endemicity of fungi and macroorganisms, but high matching in conservation needs, detailed analyses on distribution and conservation requirements are warranted for other microorganisms and soil organisms in general., This repository contains the data associated with the paper Tedersoo et al. (2022) Global patterns in endemicity and vulnerability of soil fungi // Global Change Biology. DOI:10.1111/gcb.16398 Fungi are highly diverse organisms and provide a wealth of ecosystem functions. However, distribution patterns and conservation needs of fungi have been very little explored compared to charismatic animals and plants. Here we assess endemicity patterns, global change vulnerability and conservation priority areas for functional groups of soil fungi based on six global surveys using a high-resolution, long-read metabarcoding approach. Endemicity of all fungi and most functional groups peaks in tropical habitats, including Amazonia, Yucatan, West-Central Africa, Sri Lanka and New Caledonia, with a negligible island effect compared with plants and animals. We also found that fungi are vulnerable mostly to drought, heat and land cover change, particularly in dry tropical regions with high human population density. Fungal conservation areas of highest priority include herbaceous wetlands, tropical forests and woodlands. We suggest that there should be more attention focused on the conservation of fungi, especially tropical root symbiotic arbuscular mycorrhizal and ectomycorrhizal fungi, unicellular early-diverging groups and macrofungi in general. Given the low overlap between endemicity of fungi and macroorganisms, but high matching in conservation needs, detailed analyses on distribution and conservation requirements are warranted for other microorganisms and soil organisms in general. This repository contains the following data associated with the publication: Supplementary tables S1 - S6 (`Tables_S1-S6.xlsx`): - Table S1. Definition of ecoregions and assignment of samples to ecoregions - Table S2. GSMc dataset used for endemicity analyses - Table S3. Dataset used for modeling endemicity values - Table S4. Dataset used for ca

Published
2022

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