457 results on '"MURPHY JJ"'
Search Results
2. Behavioral Effects of Ecotourism on Green Sea Turtles
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Haden, Blake, Jensen, Bronwyn, Tyska, Drew, Lockwood, Jake, Murphy, JJ, Clark, Riley, Avelar, Rori, and Bigelow, Bill
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ComputingMilieux_COMPUTERSANDEDUCATION ,ComputingMilieux_MISCELLANEOUS - Abstract
Poster created by students of The Island School semester research class of Fall 2018
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- 2022
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3. 'ONE STOP' CHEST PAIN CLINICS: DO THEY WORK?
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Murphy, JJ, Bossingham, and Hetherington, P
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- 1997
4. P825Remote monitoring of implantable loop recorders, when is more too much?
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Pounds, G., primary, Murphy, JJ., additional, Wilson, DW., additional, and Hungin, A P S, additional
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- 2017
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5. P824Real Care: minimising diagnostic time in the implantable loop recorder population
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Pounds, G., primary, Murphy, JJ., additional, Hungin, A P S, additional, Wilson, DW., additional, and Curry, JK., additional
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- 2017
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6. 617 WHAT IS THE NATURAL HISTORY OF HEART FAILURE DUE TO LEFT VENTRICULAR SYSTOLIC DYSFUNCTION IN THE ERA OF EVIDENCE BASED MEDICINE?
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Singh, R., primary, Murphy, JJ., additional, Fuat, A., additional, Brennan, G., additional, Wilson, DW, additional, and Hungin, APS., additional
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- 2012
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7. The effects of dairy cow weight on selected soil physical properties related to compaction
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Herbin, T, primary, Hennessy, D, additional, Murphy, JJ, additional, Richards, K, additional, Piwowarczyk, A, additional, and Holden, NM, additional
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- 2010
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8. Peripartum health and welfare of Holstein-Friesian cows in a confinement-TMR system compared to a pasture-based system
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Olmos, G, primary, Mee, JF, additional, Hanlon, A, additional, Patton, J, additional, Murphy, JJ, additional, and Boyle, L, additional
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- 2009
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9. Development of dairy-based functional foods
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Stanton, C, primary, Coakley, M, additional, Murphy, JJ, additional, Fitzgerald, GF, additional, Devery, R, additional, and Ross, RP, additional
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- 2002
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10. FOLLOW‐UP OF PATIENTS WITH SUSPECTED VENOUS THROMBOSIS BUT NEGATIVE RADIONUCLIDE VENOGRAPHY
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Murphy, JJ, primary and Chandler, ST, additional
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- 1995
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11. TRAINING AND SUPERVISION OF TEMPORARY TRANSVENOUS PACEMAKER INSERTION
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Murphy, JJ, primary, Frain, JPJ, additional, and Stephenson, CJ, additional
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- 1995
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12. Laparoscopic cholecystectomy without exchange transfusion in sickle cell disease
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McDermott, E.W.M., primary, AlKhalifa, K., additional, and Murphy, Jj, additional
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- 1993
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13. Ceri Williams
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Murphy, JJ
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Williams, Ceri ,Pathologists -- Biography ,Health - Abstract
Consultant histopathologist Darlington Memorial Hospital (b 1955; q Cardiff 1979; BSc, FRCPath), d 11 April 2003. Ceri spent a year in clinical haematology before training as a histopathologist. He was [...]
- Published
- 2003
14. The diagnostic accuracy and utility of a B-type natriuretic peptide test in a community population of patients with suspected heart failure.
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Fuat A, Murphy JJ, Hungin APS, Curry J, Mehrzad AA, Hetherington A, Johnston JI, Smellie WSA, Duffy V, Cawley P, Fuat, Ahmet, Murphy, Jeremy J, Hungin, A Pali S, Curry, Jane, Mehrzad, Ali A, Hetherington, Andrew, Johnston, Jennifer I, Smellie, W Stuart A, Duffy, Victoria, and Cawley, Patricia
- Abstract
Background: National guidelines suggest the use of natriuretic peptides in suspected heart failure but there have been no studies comparing assays in primary care.Aim: To test and compare the diagnostic accuracy and utility of B-type natriuretic peptide (BNP) and N-terminal B-type natriuretic peptide (NT proBNP) in diagnosing heart failure due to left ventricular systolic dysfunction in patients with suspected heart failure referred by GPs to one-stop diagnostic clinics.Design Of Study: Community cohort, prospective, diagnostic accuracy study.Setting: One-stop diagnostic clinics in Darlington Memorial and Bishop Auckland General Hospitals and general practices in South Durham.Subjects: Two hundred and ninety-seven consecutive patients with symptoms and signs suggestive of heart failure referred from general practice.Method: The study measured sensitivity, specificity, positive and negative predictive values (PPV, NPV), and area under receiver operating characteristic curve for BNP (near patient assay) and NT proBNP (laboratory assay) in diagnosis of heart failure due to left ventricular systolic dysfunction. The NPV of both assays was determined as a potential method of reducing the number of referrals for echocardiography.Results: One hundred and fourteen of the 297 patients had left ventricular systolic dysfunction (38%). At the manufacturer's recommended cut-off of 100 pg/ml BNP gave a NPV of 82%. BNP performed better at a cut-off of 40 pg/ml with a NPV of 88%. At a cut-off of 150 pg/ml, NT proBNP gave a NPV of 92%. Using cut-offs of 40 pg/ml and 150 pg/ml for BNP and NT pro-BNP, respectively, could have prevented 24% and 25% of referrals to the clinic, respectively.Conclusions: In this setting, NT pro-BNP performed marginally better than BNP, and would be easier to use practically in primary care. A satisfactory cut-off has been identified, which needs validating in general practice. NT pro-BNP could be used to select referrals to a heart failure clinic or for echocardiography. This process needs testing in real-life general practice. [ABSTRACT FROM AUTHOR]- Published
- 2006
15. Sepsis associated with transfusion of red cells contaminated with Yersinia enterocolitica
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Tipple, MA, primary, Bland, LA, additional, Murphy, JJ, additional, Arduino, MJ, additional, Panlilio, AL, additional, Farmer, JJ, additional, Tourault, MA, additional, Macpherson, CR, additional, Menitove, JE, additional, and Grindon, AJ, additional
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- 1990
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16. The prevalence and clinical significance of autoantibodies to plasminogen activator inhibitor 1 in systemic lupus erythematosus.
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Bates, RL, Payne, SJ, Drury, SL, Nelson, PN, Isenberg, DA, Murphy, JJ, and Frampton, G
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IMMUNOGLOBULINS ,PLASMINOGEN ,SYSTEMIC lupus erythematosus ,AUTOANTIBODIES ,IMMUNOASSAY - Abstract
We have recently described the novel autoantigen plasminogen activator inhibitor (PAI-1) in systemic lupus erythematosus (SLE). The aim of this study was to determine the prevalence and clinical significance of anti-PAI-1 autoantibodiesin patients with SLE. Autoantibodies to recombinant PAI-1 were measured in retrospective sera of 48 lupus patients by immunoassay in order to assess their clinical significance. This showed that 71% of sera from 48 lupus patients had significantly elevated anti-PAI-1 autoantibodiesas compared with normal control subjects (P < 0.0001). There was a weak but significant (P < 0.043) correlation with anti-dsDNA autoantibodies. In longitudinal studies, autoantibodies against PAI-1 correlated with clinical parameters measured by the BILAG disease activity index including global clinical score. Our study demonstrates the high frequency of novel autoantibodies to PAI-1 in patients with lupus. The serial clinical correlations with anti-PAI-1 autoantibodies also support the hypothesis that these autoantibodies may play a pathogenic role in lupus. [ABSTRACT FROM AUTHOR]
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- 2003
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17. Experimental studies on the aetiology of acute scorpion pancreatitis
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C. Bartholomew, Murphy Jj, H Sankaran, FitzGerald O, and McGeeney Kf
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medicine.medical_specialty ,Scorpion ,Venom ,digestive system ,complex mixtures ,Gastroenterology ,Scorpions ,Pathogenesis ,03 medical and health sciences ,Dogs ,Secretin ,Internal medicine ,biology.animal ,Sphincter of Oddi ,medicine ,Animals ,Humans ,Pancreas ,030304 developmental biology ,0303 health sciences ,Gastrointestinal tract ,biology ,Venoms ,business.industry ,030302 biochemistry & molecular biology ,Pancreatic Ducts ,medicine.disease ,3. Good health ,Trinidad and Tobago ,medicine.anatomical_structure ,Pancreatitis ,Acute Disease ,Amylases ,Acute pancreatitis ,Surgery ,business ,Digestive System - Abstract
This study examined the action of the venom of the scorpion Tityus trinitatis on the pancreas and gastrointestinal tract in anaesthetized dogs, on the isolated extracorporeal haemoperfised canine pancreas and on the isolated canine sphincter of Oddi. The venom induces exocrine secretion in both the isolated and intact pancreas and causes contraction of the isolated sphincter of Oddi. These results are discussed in relation to the pathogenesis of acute scorpion pancreatitis and possibly of some other form of acute pancreatitis.
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- 1976
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18. DIRECT CYSTOMETRY
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Schoenberg Hw and Murphy Jj
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medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Urology ,media_common.quotation_subject ,Urinary system ,Cystometry ,medicine.disease ,Urination ,Diverticulosis ,Medicine ,business ,Hydronephrosis ,media_common - Published
- 1962
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19. Exocrine pancreatic response to the venom of the scorpion, Tityus trinitatis
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Oliver FitzGerald, Murphy Jj, C. Bartholomew, and McGeeney Kf
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medicine.medical_specialty ,animal structures ,Tityus trinitatis ,Scorpion ,Venom ,Biology ,complex mixtures ,Scorpions ,Dogs ,Pancreatic Juice ,Internal medicine ,biology.animal ,medicine ,Animals ,Trypsin ,Secretion ,Pancreas ,Venoms ,Gastroenterology ,Lipase ,Trinidad and Tobago ,medicine.anatomical_structure ,Endocrinology ,Exocrine pancreas ,Amylases ,Pancreatic juice ,Research Article ,medicine.drug - Abstract
This paper records for the first time the exocrine pancreatic response to scorpion venom, in this case that of Tityus trinitatis, a scorpion endemic in Trinidad. The crude venom injected intravenously into fasting anaesthetised dogs induced a secretion of the exocrine pancreas. The secretion evoked was rich in enzymes.
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- 1977
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20. Response of the isolated pancreas to scorpion venom
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McGeeney Kf, Murphy Jj, FitzGerald O, and C. Bartholomew
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medicine.medical_specialty ,Scorpion ,Venom ,complex mixtures ,Secretin ,Pathogenesis ,Scorpions ,Dogs ,Internal medicine ,biology.animal ,medicine ,Animals ,Pancreas ,biology ,Dose-Response Relationship, Drug ,business.industry ,Venoms ,General Medicine ,medicine.disease ,Perfusion ,Sting ,medicine.anatomical_structure ,Endocrinology ,Pancreatitis ,Acute Disease ,Acute pancreatitis ,business - Abstract
THE venom of the scorpionTityus trinitatis causes secretion of the secretin stimulated isolated canine pancreas. In the absence of secretin, similar doses of venom evoked no response. The implications of these results are discussed. The results with this isolated model show that the action of the venom is directly on the pancreas. Further, these results provide the opportunity to offer a rationale for the pathogenesis of that form of pancreatitis which occurs following the sting of the scorpion.
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- 1977
21. The Action of Tityus trinitatis Venom on the Canine Pancreas
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C. Bartholomew, FitzGerald O, Murphy Jj, and McGeeney Kf
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medicine.medical_specialty ,animal structures ,Tityus trinitatis ,biology ,business.industry ,Scorpion ,virus diseases ,Venom ,Scorpion stings ,Pharmacology ,medicine.disease ,complex mixtures ,eye diseases ,Sting ,medicine.anatomical_structure ,Endocrinology ,Internal medicine ,biology.animal ,Pancreatic juice ,Medicine ,Acute pancreatitis ,business ,Pancreas - Abstract
Acute pancreatitis following the sting of the scorpion of Trinidad, Tityus trinitatis has been described (Waterman, 1938; Poon-King, 1963; Bartholomew, 1970). Whereas excessive salivary secretion is well documented as one of the common sequelae of scorpion stings, as far as we are aware no reports have ever been published on the secretory response of the pancreas to scorpion venom. This paper records for the first time the pancreatic exocrine response to scorpion venom, in this case that of T. trinitatis from Trinidad.
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- 1976
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22. Renal innervation and renin activity in salt metabolism and hypertension
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JH Russell, Itskovitz Hd, Mogil Ra, and Murphy Jj
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chemistry.chemical_classification ,medicine.medical_specialty ,Hypertension, Renal ,Sympathetic Nervous System ,business.industry ,Sodium ,Salt (chemistry) ,Metabolism ,Kidney ,Plasma renin activity ,Norepinephrine ,Endocrinology ,Dogs ,chemistry ,Physiology (medical) ,Internal medicine ,Renin ,Methods ,Medicine ,Animals ,Sympathectomy ,business - Published
- 1969
23. Renal innervation and renin activity in salt metabolism and hypertension
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Mogil, RA, primary, Itskovitz, HD, additional, Russell, JH, additional, and Murphy, JJ, additional
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- 1969
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24. Evaluation of Preoperative Skin Preparation
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J. Kucharczu, Kretzler H, Murphy Jj, Zintel Ha, Gamble J, Ellis H, A. Nichols, J. A. Dull, and Fultz C
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medicine.medical_specialty ,business.industry ,medicine ,Surgery ,business ,Skin preparation - Published
- 1952
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25. Letter. Self-limiting abdominal wall herniation and constipation following herpes zoster infection.
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Healy, C, McGreal, G, Lenehan, B, McDermott, EW, and Murphy, JJ
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- 1998
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26. Get Fit For Your Op.
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Murphy JJ and Conway B
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- 2007
27. Problems with temporary cardiac pacing: expecting trainees in medicine to perform transvenous pacing is no longer acceptable.
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Murphy JJ
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- 2001
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28. Self-limiting abdominal wall herniation and constipation following herpes zoster infection
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Healy, C, McGreal, G, Lenehan, B, McDermott, EW, and Murphy, JJ
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- 1998
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29. Antitumour activity of neratinib in patients with HER2-mutant advanced biliary tract cancers
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James J. Harding, Sarina A. Piha-Paul, Ronak H. Shah, Jessica J. Murphy, James M. Cleary, Geoffrey I. Shapiro, David I. Quinn, Irene Braña, Victor Moreno, Mitesh Borad, Sherene Loi, Iben Spanggaard, Haeseong Park, James M. Ford, Mónica Arnedos, Salomon M. Stemmer, Christelle de la Fouchardiere, Christos Fountzilas, Jie Zhang, Daniel DiPrimeo, Casey Savin, S. Duygu Selcuklu, Michael F. Berger, Lisa D. Eli, Funda Meric-Bernstam, Komal Jhaveri, David B. Solit, Ghassan K. Abou-Alfa, Institut Català de la Salut, [Harding JJ] Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA. Department of Medicine, Weill Cornell Medical College, New York, NY, USA. [Piha-Paul SA] Department of Investigational Cancer Therapeutics, The University of Texas, MD Anderson Cancer Center, Houston, TX, USA. [Shah RH, Murphy JJ] Department of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY, USA. Kravis Center for Molecular Oncology, Sloan Kettering Institute, New York, NY, USA. [Cleary JM, Shapiro GI] Dana-Farber Cancer Institute, Boston, MA, USA. [Braña I] Servei d’Oncologia Mèdica, Vall d’Hebron Hospital Universitari, Barcelona, Spain. Molecular Therapeutic Research Unit – UITM-La Caixa, Vall d’Hebron Institute of Oncology (VHIO), Barcelona, Spain, and Vall d'Hebron Barcelona Hospital Campus
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Multidisciplinary ,acciones y usos químicos::acciones farmacológicas::mecanismos moleculares de acción farmacológica::inhibidores enzimáticos::inhibidores de proteínas cinasas [COMPUESTOS QUÍMICOS Y DROGAS] ,Otros calificadores::Otros calificadores::/farmacoterapia [Otros calificadores] ,General Physics and Astronomy ,Neoplasms::Neoplasms by Site::Digestive System Neoplasms::Biliary Tract Neoplasms [DISEASES] ,General Chemistry ,Other subheadings::Other subheadings::/drug therapy [Other subheadings] ,Otros calificadores::Otros calificadores::/efectos adversos [Otros calificadores] ,Chemical Actions and Uses::Pharmacologic Actions::Molecular Mechanisms of Pharmacological Action::Enzyme Inhibitors::Protein Kinase Inhibitors [CHEMICALS AND DRUGS] ,General Biochemistry, Genetics and Molecular Biology ,Tracte biliar - Càncer - Tractament ,Other subheadings::Other subheadings::/adverse effects [Other subheadings] ,neoplasias::neoplasias por localización::neoplasias del sistema digestivo::neoplasias del tracto biliar [ENFERMEDADES] ,Proteïnes quinases - Inhibidors - Efectes secundaris - Abstract
Antitumour activity; Neratinib; Biliary tract cancers Actividad antitumoral; Neratinib; Cánceres de vías biliares Activitat antitumoral; Neratinib; Càncers de vies biliars HER2 mutations are infrequent genomic events in biliary tract cancers (BTCs). Neratinib, an irreversible, pan-HER, oral tyrosine kinase inhibitor, interferes with constitutive receptor kinase activation and has activity in HER2-mutant tumours. SUMMIT is an open-label, single-arm, multi-cohort, phase 2, ‘basket’ trial of neratinib in patients with solid tumours harbouring oncogenic HER2 somatic mutations (ClinicalTrials.gov: NCT01953926). The primary objective of the BTC cohort, which is now complete, is first objective response rate (ORR) to neratinib 240 mg orally daily. Secondary objectives include confirmed ORR, clinical benefit rate, progression-free survival, duration of response, overall survival, safety and tolerability. Genomic analyses were exploratory. Among 25 treatment-refractory patients (11 cholangiocarcinoma, 10 gallbladder, 4 ampullary cancers), the ORR is 16% (95% CI 4.5–36.1%). The most common HER2 mutations are S310F (n = 11; 48%) and V777L (n = 4; 17%). Outcomes appear worse for ampullary tumours or those with co-occurring oncogenic TP53 and CDKN2A alterations. Loss of amplified HER2 S310F and acquisition of multiple previously undetected oncogenic co-mutations are identified at progression in one responder. Diarrhoea is the most common adverse event, with any-grade diarrhoea in 14 patients (56%). Although neratinib demonstrates antitumour activity in patients with refractory BTC harbouring HER2 mutations, the primary endpoint was not met and combinations may be explored. The SUMMIT trial was sponsored/funded by Puma Biotechnology, Inc. Investigators from MSKCC who participated in the trial were also supported in part by a Cancer Center Support Grant (P30 CA008748) and Cycle for Survival. Puma Biotechnology, Inc was involved in the following: study design; data collection, analysis and interpretation of the data; writing of the report; the decision to submit the article for publication. The authors would like to thank all patients and their families for participating in the SUMMIT trial. The authors acknowledge David Hyman (Memorial Sloan Kettering), Richard Bryce (Puma Biotechnology), and Alshad Lalani (Puma Biotechnology) for their important contributions to the original SUMMIT study design, oversight, and interpretation, and Feng Xu (Puma Biotechnology) and Jane Liang (Puma Biotechnology) for statistical and programming support. The authors also thank Lee Miller and Deirdre Carman (Miller Medical Communications Ltd) for medical writing/editing assistance, which was funded by Puma Biotechnology, Inc.
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- 2023
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30. Beyond cost: 'responsible purchasing' of managed care by employers: two surveys of business-coalition members reveal how seriously these firms take their purchasing role on behalf of their workers.
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Lo Sasso AT, Perloff L, Schield J, Murphy JJ, Mortimer JD, and Budetti PP
- Abstract
We explore the extent of 'responsible purchasing' by employers--the degree to which employers collect and use nonfinancial information in selecting and managing employee health plans. Most firms believe that they have some responsibility for assessing the quality of the health plans they offer. Some pay attention to plan characteristics such as the ability to provide adequate access to providers and services and scores on enrollee satisfaction surveys. A more limited but still notable number of firms take specific actions based on responsible purchasing information. Because of countervailing pressures, however, it is not clear whether or not the firms most involved in responsible purchasing are signaling a developing trend. [ABSTRACT FROM AUTHOR]
- Published
- 1999
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31. Exploring spatio-temporal changes in coastal recreational fisheries and potential links to extreme weather events.
- Author
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Ochwada-Doyle FA, Miles N, Hughes JM, Murphy JJ, Lowry MB, West L, and Taylor MD
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- Animals, Australia, Recreation, Ecosystem, Spatio-Temporal Analysis, Climate Change, Fishes physiology, Humans, SARS-CoV-2 isolation & purification, Fisheries, Extreme Weather, COVID-19 epidemiology
- Abstract
Extreme weather events across coastal environments are expected to increase in frequency under predicted climate change scenarios. These events can impact coastal recreational fisheries and their supporting ecosystems by influencing the productivity of fish stocks or altering behaviours and decision-making among fishers. Using off-site telephone/diary survey data on estuarine and oceanic recreational fishing activity in eastern Australia, we analyse interannual and geographic variability in bream (Acanthopagrus spp) and snapper (Chrysophrys auratus) catch, total effort and total catch per unit effort (CPUE) through a period (2013/2014, 2017/2018 and 2019/2020) that encompassed severe drought, bushfires and flooding. Interacting spatial and temporal differences were detected for bream and may reflect spatial variation in the intensity and extent of some of the extreme weather events. The catch of snapper did not change temporally, providing little evidence that this species' catch may be influenced by the extreme weather events. Independent bioregional and temporal effects on effort were detected, while CPUE only showed significant bioregional differences. Although adverse conditions created by the extreme weather events may have dissuaded fisher participation and impacted effort, we propose that the observed temporal patterns in effort reflect the early influence of socio-economic changes brought on by the COVID-19 pandemic on coastal recreational fishing, over and above the impacts of extreme weather events. This study demonstrates how interrelated ecological, social and economic factors can shape coastal recreational fisheries and facilitates development of management strategies to address future threats to the sector., Competing Interests: NO authors have competing interests., (Copyright: © 2024 Ochwada-Doyle et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
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32. Land cover and space use influence coyote carnivory: evidence from stable-isotope analysis.
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Webster SC, Hinton JW, Chamberlain MJ, Murphy JJ, and Beasley JC
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- Animals, Carbon Isotopes analysis, Carnivory, Diet, Territoriality, Southeastern United States, Feeding Behavior physiology, Coyotes physiology, Nitrogen Isotopes analysis
- Abstract
For many species, the relationship between space use and diet composition is complex, with individuals adopting varying space use strategies such as territoriality to facilitate resource acquisition. Coyotes ( Canis latrans ) exhibit two disparate types of space use; defending mutually exclusive territories (residents) or moving nomadically across landscapes (transients). Resident coyotes have increased access to familiar food resources, thus improved foraging opportunities to compensate for the energetic costs of defending territories. Conversely, transients do not defend territories and are able to redirect energetic costs of territorial defense towards extensive movements in search of mates and breeding opportunities. These differences in space use attributed to different behavioral strategies likely influence foraging and ultimately diet composition, but these relationships have not been well studied. We investigated diet composition of resident and transient coyotes in the southeastern United States by pairing individual space use patterns with analysis of stable carbon (δ
13 C) and nitrogen (δ15 N) isotope values to assess diet. During 2016-2017, we monitored 41 coyotes (26 residents, 15 transients) with GPS radio-collars along the Savannah River area in the southeastern United States. We observed a canopy effect on δ13 C values and little anthropogenic food in coyote diets, suggesting13 C enrichment is likely more influenced by reduced canopy cover than consumption of human foods. We also observed other land cover effects, such as agricultural cover and road density, on δ15 N values as well as reduced space used by coyotes, suggesting that cover types and localized, resident-like space use can influence the degree of carnivory in coyotes. Finally, diets and niche space did not differ between resident and transient coyotes despite differences observed in the proportional contribution of potential food sources to their diets. Although our stable isotope mixing models detected differences between the diets of resident and transient coyotes, both relied mostly on mammalian prey (52.8%, SD = 15.9 for residents, 42.0%, SD = 15.6 for transients). Resident coyotes consumed more game birds (21.3%, SD = 11.6 vs 13.7%, SD = 8.8) and less fruit (10.5%, SD = 6.9 vs 21.3%, SD = 10.7) and insects (7.2%, SD = 4.7 vs 14.3%, SD = 8.5) than did transients. Our findings indicate that coyote populations fall on a feeding continuum of omnivory to carnivory in which variability in feeding strategies is influenced by land cover characteristics and space use behaviors., Competing Interests: The authors declare that they have no competing interests., (© 2024 Webster et al.)- Published
- 2024
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33. Create a culture of experiments in environmental programs.
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Ferraro PJ, Cherry TL, Shogren JF, Vossler CA, Cason TN, Flint HB, Hochard JP, Johansson-Stenman O, Martinsson P, Murphy JJ, Newbold SC, Thunström L, van Soest D, van 't Veld K, Dannenberg A, Loewenstein GF, and van Boven L
- Subjects
- Learning
- Abstract
Organizations need a better "learning by doing" approach.
- Published
- 2023
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34. RNA-Binding Proteins and Their Emerging Roles in Cancer: Beyond the Tip of the Iceberg.
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Murphy JJ, Surendranath K, and Kanagaraj R
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- Humans, RNA-Binding Proteins genetics, RNA-Binding Proteins metabolism, Neoplasms genetics, Neoplasms metabolism
- Abstract
RNA-binding proteins (RBPs) represent a large family of proteins with an extensive array of roles that contribute to coordinating and directing multiple functions in RNA metabolism and transcription [...].
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- 2023
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35. A deep learning workflow for quantification of micronuclei in DNA damage studies in cultured cancer cell lines: A proof of principle investigation.
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Panchbhai A, Savash Ishanzadeh MC, Sidali A, Solaiman N, Pankanti S, Kanagaraj R, Murphy JJ, and Surendranath K
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- Humans, Workflow, Micronucleus Tests methods, DNA Damage, Cell Line, Deep Learning, Neoplasms
- Abstract
The cytokinesis block micronucleus assay is widely used for measuring/scoring/counting micronuclei, a marker of genome instability in cultured and primary cells. Though a gold standard method, this is a laborious and time-consuming process with person-to-person variation observed in quantification of micronuclei. We report in this study the utilisation of a new deep learning workflow for detection of micronuclei in DAPI stained nuclear images. The proposed deep learning framework achieved an average precision of >90% in detection of micronuclei. This proof of principle investigation in a DNA damage studies laboratory supports the idea of deploying AI powered tools in a cost-effective manner for repetitive and laborious tasks with relevant computational expertise. These systems will also help improving the quality of data and wellbeing of researchers., Competing Interests: Declaration of Competing Interest The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results., (Copyright © 2023 Elsevier B.V. All rights reserved.)
- Published
- 2023
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36. Veteran and Staff Experience from a Pilot Program of Health Care System-Distributed Wearable Devices and Data Sharing.
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Saleem JJ, Wilck NR, Murphy JJ, and Herout J
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- Delivery of Health Care, Humans, Information Dissemination, Pilot Projects, United States, United States Department of Veterans Affairs, Veterans, Wearable Electronic Devices
- Abstract
Objective: The growing trend to use wearable devices to track activity and health data has the potential to positively impact the patient experience with their health care at home and with their care team. As part of a pilot program, the U.S. Department of Veterans Affairs (VA) distributed Fitbits to Veterans through four VA medical centers. Our objective was to assess the program from both Veterans' and clinicians' viewpoints. Specifically, we aimed to understand barriers to Fitbit setup and use for Veterans, including syncing devices with a VA mobile application (app) to share data, and assess the perceived value of the device functions and ability to share information from the Fitbit with their care team. In addition, we explored the clinicians' perspective, including how they expected to use the patient-generated health data (PGHD)., Methods: We performed semi-structured interviews with 26 Veterans and 16 VA clinicians to assess the program. Responses to each question were summarized in order of frequency of occurrence across participants and audited by an independent analyst for accuracy., Results: Our findings reveal that despite setup challenges, there is support for the use of Fitbits to engage Veterans and help manage their health. Clinicians believed there were benefits for having Veterans use the Fitbits and expected to use the PGHD in a variety of ways as part of the Veterans' care plans, including monitoring progress toward health behavior goals. Veterans were overwhelmingly enthusiastic about using the Fitbits; this enthusiasm seems to extend beyond the 3 month "novelty period.", Conclusion: The pilot program for distributing Fitbits to Veterans appears to be successful from both Veterans' and clinicians' perspectives and suggests that expanded use of wearable devices should be considered. Future studies will need to carefully consider how to incorporate the PGHD into the electronic health record and clinical workflow., Competing Interests: None declared., (Thieme. All rights reserved.)
- Published
- 2022
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37. AU-Rich Element RNA Binding Proteins: At the Crossroads of Post-Transcriptional Regulation and Genome Integrity.
- Author
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Sidali A, Teotia V, Solaiman NS, Bashir N, Kanagaraj R, Murphy JJ, and Surendranath K
- Subjects
- 3' Untranslated Regions genetics, Animals, Humans, Adenine metabolism, Genome genetics, RNA Processing, Post-Transcriptional genetics, RNA-Binding Proteins genetics, Uridine genetics
- Abstract
Genome integrity must be tightly preserved to ensure cellular survival and to deter the genesis of disease. Endogenous and exogenous stressors that impose threats to genomic stability through DNA damage are counteracted by a tightly regulated DNA damage response (DDR). RNA binding proteins (RBPs) are emerging as regulators and mediators of diverse biological processes. Specifically, RBPs that bind to adenine uridine (AU)-rich elements (AREs) in the 3' untranslated region (UTR) of mRNAs (AU-RBPs) have emerged as key players in regulating the DDR and preserving genome integrity. Here we review eight established AU-RBPs (AUF1, HuR, KHSRP, TIA-1, TIAR, ZFP36, ZFP36L1, ZFP36L2) and their ability to maintain genome integrity through various interactions. We have reviewed canonical roles of AU-RBPs in regulating the fate of mRNA transcripts encoding DDR genes at multiple post-transcriptional levels. We have also attempted to shed light on non-canonical roles of AU-RBPs exploring their post-translational modifications (PTMs) and sub-cellular localization in response to genotoxic stresses by various factors involved in DDR and genome maintenance. Dysfunctional AU-RBPs have been increasingly found to be associated with many human cancers. Further understanding of the roles of AU-RBP
S in maintaining genomic integrity may uncover novel therapeutic strategies for cancer.- Published
- 2021
- Full Text
- View/download PDF
38. An experimental test of fundraising appeals targeting donor and recipient benefits.
- Author
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List JA, Murphy JJ, Price MK, and James AG
- Subjects
- Cost-Benefit Analysis, Economics, Behavioral, Humans, Models, Psychological, Altruism, Charities, Fund Raising, Motivation, Social Behavior
- Abstract
We partnered with Alaska's Pick.Click.Give. programme to implement a statewide natural field experiment with 540,000 Alaskans designed to examine two of the main motivations for charitable giving: concerns for the benefits to self (impure altruism or 'warm glow') or concerns for the benefits to others (pure altruism). Our empirical results highlight the relative importance of appeals to self: individuals who received such an appeal were 6.6% more likely to give and gave 23% more than counterparts in the control group. Yet, a message that instead appealed to recipient benefits (motivated by altruism) had no statistically significant effect on average donations relative to the control group. We also find evidence of long-run effects of warm-glow appeals in the subsequent year. Our results have import for theoreticians and empiricists interested in modelling charitable giving as well as practitioners and policymakers., (© 2021. The Author(s), under exclusive licence to Springer Nature Limited.)
- Published
- 2021
- Full Text
- View/download PDF
39. "Getting Ireland Active"-Application of a Systems Approach to Increase Physical Activity in Ireland Using the GAPPA Framework.
- Author
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Murphy JJ, Mansergh F, Murphy MH, Murphy N, Cullen B, O'Brien S, Finn S, O'Donoghue G, Barry N, O'Shea S, Leyden KM, Smyth P, Cooper J, Bengoechea EG, Cavill N, Milat AJ, Bauman AE, and Woods CB
- Subjects
- Female, Humans, Ireland, Male, Systems Analysis, Exercise, Health Promotion
- Abstract
Physical activity (PA) promotion is a complex challenge, with the Global Action Plan on Physical Activity (GAPPA) endorsing a systems approach and recommending countries assess existing areas of progress which can be strengthened. This paper reports a process facilitating a systems approach for identifying current good practice and gaps for promoting PA in Ireland. Elements of participatory action research were enabled through 3 stages: (1) aligning examples of actions from Irish policy documents (n = 3) to the GAPPA, (2) workshop with stakeholders across multiple sectors, and (3) review of outputs. Data collected through the workshop were analyzed using a deductive thematic analysis guided by the GAPPA. The policy context in Ireland aligns closely to the GAPPA with the creation of Active Systems the most common strategic objective across policy documents. Forty participants (50% male) took part in the systems approach workshop, which after revision resulted in 80 examples of good practice and 121 actions for greater impact. A pragmatic and replicable process facilitating a systems approach was adopted and showed current Irish policy and practices align with the GAPPA "good practices." The process provides existing areas of progress which can be strengthened, as well as the policy opportunities and practice gaps.
- Published
- 2021
- Full Text
- View/download PDF
40. Correction: Do truth-telling oaths improve honesty in crowd-working?
- Author
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Jacquemet N, James AG, Luchini S, Murphy JJ, and Shogren JF
- Abstract
[This corrects the article DOI: 10.1371/journal.pone.0244958.].
- Published
- 2021
- Full Text
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41. Nickel-Catalyzed Enantioselective Synthesis of Pre-Differentiated Homoallylic syn - or anti -1,2-Diols from Aldehydes and Dienol Ethers.
- Author
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Davies TQ, Murphy JJ, Dousset M, and Fürstner A
- Abstract
Nickel catalysis allied with cyclodiphosphazane or VAPOL-derived phosphoramidite ligands provides selective access to monoprotected vicinal diols by reductive coupling of dienol ethers and aldehydes. The observed regioselectivity is unprecedented, in that the diene reacts at the least nucleophilic and most hindered C atom that is attached to the oxygen substituent rather than at the terminal position. Notably, both syn and anti diastereomers of the products can be accessed depending on the configuration of the diene partner with usually excellent diastereo- and enantioselectivity.
- Published
- 2021
- Full Text
- View/download PDF
42. Do truth-telling oaths improve honesty in crowd-working?
- Author
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Jacquemet N, James AG, Luchini S, Murphy JJ, and Shogren JF
- Subjects
- Adolescent, Adult, Aged, Aged, 80 and over, Deception, Female, Humans, Male, Middle Aged, Surveys and Questionnaires, Young Adult, Codes of Ethics, Crowdsourcing economics, Crowdsourcing methods, Truth Disclosure
- Abstract
This study explores whether an oath to honesty can reduce both shirking and lying among crowd-sourced internet workers. Using a classic coin-flip experiment, we first confirm that a substantial majority of Mechanical Turk workers both shirk and lie when reporting the number of heads flipped. We then demonstrate that lying can be reduced by first asking each worker to swear voluntarily on his or her honor to tell the truth in subsequent economic decisions. Even in this online, purely anonymous environment, the oath significantly reduced the percent of subjects telling "big" lies (by roughly 27%), but did not affect shirking. We also explore whether a truth-telling oath can be used as a screening device if implemented after decisions have been made. Conditional on flipping response, MTurk shirkers and workers who lied were significantly less likely to agree to an ex-post honesty oath. Our results suggest oaths may help elicit more truthful behavior, even in online crowd-sourced environments., Competing Interests: The authors have declared that no competing interests exist.
- Published
- 2021
- Full Text
- View/download PDF
43. In Response to "Association Between Youth Smoking, Electronic Cigarette Use, and COVID-19".
- Author
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Camacho OM and Murphy JJ
- Subjects
- Adolescent, Humans, SARS-CoV-2, Smoking, COVID-19, Electronic Nicotine Delivery Systems, Vaping
- Published
- 2021
- Full Text
- View/download PDF
44. Delayed Presentation of Meconium Ileus in an Infant With Cystic Fibrosis.
- Author
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Lahiri T, Sullivan JS, Sartorelli KH, and Murphy JJ
- Subjects
- Cholestasis prevention & control, Delayed Diagnosis, Female, Fish Oils therapeutic use, Humans, Infant, Newborn, Lipids administration & dosage, Meconium Ileus therapy, Olive Oil therapeutic use, Parenteral Nutrition, Soybean Oil therapeutic use, Triglycerides administration & dosage, Cystic Fibrosis diagnosis, Meconium Ileus diagnosis
- Abstract
Although infants with meconium ileus usually present with apparent symptoms shortly after birth, the diagnosis of meconium ileus and cystic fibrosis (CF) may be delayed, awaiting newborn screening (NBS) results. We present the case of an 11-day-old term girl with delayed passage of meconium at 48 hours who had 2 subsequent small meconium stools over the following week. There was a normal feeding history and no signs of abdominal distension or distress. She then presented with an acute abdomen, decompensated shock, bowel perforation, and peritonitis, requiring multiple intestinal surgeries. Her NBS for CF was positive, and CF was ultimately confirmed with mutation analysis. Her course was complicated by prolonged parenteral feedings and mechanical ventilation via tracheostomy. The infant was managed with soy oil, medium chain triglycerides, olive oil, fish oil lipids and experienced only transaminitis without cholestasis and no chronic liver sequelae, with subsequent normalization of her transaminases without treatment. Because her only symptom was decreased stool output and NBS results were unavailable, the CF diagnosis was delayed until she presented in extremis. Delayed meconium passage and decreased stool output during the first week of life should lead to suspicion and additional evaluation for CF while awaiting NBS results. Careful monitoring is indicated to prevent serious, life-threatening complications. The use of soy oil, medium chain triglycerides, olive oil, fish oil lipids for infants requiring prolonged parenteral nutrition may also be considered proactively to prevent cholestasis, particularly for high risk groups., Competing Interests: POTENTIAL CONFLICT OF INTEREST: The authors have indicated they have no potential conflicts of interest to disclose., (Copyright © 2020 by the American Academy of Pediatrics.)
- Published
- 2020
- Full Text
- View/download PDF
45. Veterans' response to an automated text messaging protocol during the COVID-19 pandemic.
- Author
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Saleem JJ, Read JM, Loehr BM, Frisbee KL, Wilck NR, Murphy JJ, Vetter BM, and Herout J
- Subjects
- Betacoronavirus, COVID-19, Decision Trees, Humans, Mobile Applications, SARS-CoV-2, Telemedicine, Triage, United States, United States Department of Veterans Affairs, Coronavirus Infections diagnosis, Pandemics, Pneumonia, Viral diagnosis, Text Messaging, Veterans
- Abstract
The US Department of Veterans Affairs (VA) is using an automated short message service application named "Annie" as part of its coronavirus disease 2019 (COVID-19) response with a protocol for coronavirus precautions, which can help the veteran monitor symptoms and can advise the veteran when to contact his or her VA care team or a nurse triage line. We surveyed 1134 veterans on their use of the Annie application and coronavirus precautions protocol. Survey results support what is likely a substantial resource savings for the VA, as well as non-VA community healthcare. Moreover, the majority of veterans reported at least 1 positive sentiment (felt more connected to VA, confident, or educated and/or felt less anxious) by receiving the protocol messages. The findings from this study have implications for other healthcare systems to help manage a patient population during the coronavirus pandemic., (Published by Oxford University Press on behalf of the American Medical Informatics Association 2020. This work is written by US Government employees and is in the public domain in the US.)
- Published
- 2020
- Full Text
- View/download PDF
46. Chagosensine: A Riddle Wrapped in a Mystery Inside an Enigma.
- Author
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Heinrich M, Murphy JJ, Ilg MK, Letort A, Flasz JT, Philipps P, and Fürstner A
- Subjects
- Alkenes chemical synthesis, Alkenes chemistry, Alkynes chemical synthesis, Alkynes chemistry, Biological Products chemistry, Catalysis, Chemistry Techniques, Synthetic, Cobalt chemistry, Cyclization, Furans chemical synthesis, Furans chemistry, Lactones chemical synthesis, Lactones chemistry, Macrolides chemistry, Oxidation-Reduction, Stereoisomerism, Biological Products chemical synthesis, Macrolides chemical synthesis
- Abstract
The marine macrolide chagosensine is supposedly distinguished by a ( Z,Z )-configured 1,3-chlorodiene contained within a highly strained 16-membered lactone ring, which also incorporates two trans -2,5-disubstituted tetrahydrofuran (THF) rings; this array is unique. After our initial synthesis campaign had shown that the originally proposed structure is incorrect, the published data set was critically revisited to identify potential mis-assignments. The "northern" THF ring and the anti -configured diol in the "southern" sector both seemed to be sites of concern, thus making it plausible that a panel of eight diastereomeric chagosensine-like compounds would allow the puzzle to be solved. To meet the challenge, the preparation of the required building blocks was optimized, and a convergent strategy for their assembly was developed. A key role was played by the cobalt-catalyzed oxidative cyclization of alken-5-ol derivatives ("Mukaiyama cyclization"), which is shown to be exquisitely chemoselective for terminal alkenes, leaving even terminal alkynes (and other sites of unsaturation) untouched. Likewise, a palladium-catalyzed alkyne alkoxycarbonylation reaction with formation of an α-methylene-γ-lactone proved instrumental, which had not found application in natural product synthesis before. Further enabling steps were a nickel-catalyzed "Tamaru-type" homocrotylation, stereodivergent aldehyde homologations, radical hydroindation, and palladium-catalyzed alkyne-1,2-bis-stannation. The different building blocks were assembled in a serial fashion to give the idiosyncratic chlorodienes by an unprecedented site-selective Stille coupling followed by copper-mediated tin/chlorine exchange. The macrolactones were closed under forcing Yamaguchi conditions, and the resulting products were elaborated into the targeted compound library. Yet, only one of the eight diastereomers turned out to be stable in the solvent mixture that had been used to analyze the natural product; all other isomers were prone to ring opening and/or ring expansion. In addition to this stability issue, our self-consistent data set suggests that chagosensine has almost certainly little to do with the structure originally proposed by the isolation team.
- Published
- 2020
- Full Text
- View/download PDF
47. Early Career Professionals' (Researchers, Practitioners, and Policymakers) Role in Advocating, Disseminating, and Implementing the Global Action Plan on Physical Activity: ISPAH Early Career Network View.
- Author
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Direito A, Murphy JJ, Mclaughlin M, Mair J, Mackenzie K, Kamada M, Sutherland R, Montgomery S, and Shilton T
- Subjects
- Humans, Exercise physiology, Health Promotion methods, Research Personnel
- Abstract
Increasing population levels of physical activity (PA) can assist in achieving the United Nations sustainable development goals, benefiting multiple sectors and contributing to global prosperity. Practices and policies to increase PA levels exist at the subnational, national, and international levels. In 2018, the World Health Organization launched the first Global Action Plan on Physical Activity (GAPPA). The GAPPA provides guidance through a framework of effective and feasible policy actions for increasing PA, and requires engagement and advocacy from a wide spectrum of stakeholders for successful implementation of the proposed actions. Early career professionals, including researchers, practitioners, and policymakers, can play a major role with helping "all people being regularly active" by contributing to 4 overarching areas: (1) generation-of evidence, (2) dissemination-of key messages and evidence, (3) implementation-of the evidence-based actions proposed in the GAPPA, and (4) contributing to advocacy for robust national action plans on PA. The contribution of early career professionals can be achieved through 5 pathways: (1) research, (2) workplace/practice, (3) business, (4) policy, and (5) professional and public opinion. Recommendations of how early career professionals can contribute to the generation, dissemination, and implementation of the evidence and actions proposed by the GAPPA are provided.
- Published
- 2019
- Full Text
- View/download PDF
48. Prostate Cancer: The Role of Inflammation and Chemokines.
- Author
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Rani A, Dasgupta P, and Murphy JJ
- Subjects
- Animals, Cell Movement, Disease Progression, Humans, Inflammation pathology, Male, Prostatic Neoplasms immunology, Tumor Microenvironment immunology, Chemokines physiology, Inflammation physiopathology, Prostatic Neoplasms pathology
- Abstract
Prostate cancer (PC) is a leading cause of death in men. Inflammation is one of the initiating processes whereby cells are trafficked into the tumor microenvironment by specific cytokines termed chemokines. This recruitment is complex and involves diverse leukocyte subsets with procancer and anticancer functions. Chemokines promote/abrogate proliferation of cancerous cells, block/aid apoptosis, and are instrumental/detrimental in cancer cell migration required for metastasis. Chemokines guide the release/transport of immune cells that serve as chaperones at sites of inflammation, and after subsequent activation, they lead to an immune response. The variety of immune cells recruited at the site of tumor initiation possess unique functions, and the plethora of chemokines released by each cell derived from a progenitor cell activated under a defined set of conditions dictates its specific role in cancer progression/regression. Geographic consequences that govern the climate and endemic diseases, along with the associated evolutionary effects that at times protect populations from one disease, could lead to genetic variations that determine a role for ethnicity and race in PC risk and susceptibility. Dysregulated expression or an imbalance in the homeostatic mechanisms associated with chemokines is implicated in PC. This review discusses the role of inflammation and chemokines in PC., (Copyright © 2019 American Society for Investigative Pathology. Published by Elsevier Inc. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
49. Novel Transhepatic Percutaneous Approach for Left Atrial Appendage Occlusion Using a Watchman Device.
- Author
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Huang HD, Murphy JJ, Sharma A, Kavinsky CJ, and Poulin MF
- Subjects
- Atrial Fibrillation diagnosis, Atrial Fibrillation physiopathology, Atrial Function, Left, Female, Humans, Middle Aged, Prosthesis Design, Punctures, Treatment Outcome, Atrial Appendage diagnostic imaging, Atrial Appendage physiopathology, Atrial Fibrillation therapy, Cardiac Catheterization instrumentation, Catheterization, Peripheral, Hepatic Veins diagnostic imaging
- Published
- 2019
- Full Text
- View/download PDF
50. Interactive Visualization to Facilitate Monitoring Longitudinal Survey Data and Paradata
- Author
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Murphy JJ, Duprey MA, Chew RF, Biemer PP, Harris KM, and Halpern CT
- Abstract
Surveys often require monitoring during data collection to ensure progress in meeting goals or to evaluate the interim results of an embedded experiment. Under complex designs, the amount of data available to monitor may be overwhelming and the production of reports and charts can be costly and time consuming. This is especially true in the case of longitudinal surveys, where data may originate from multiple waves. Other such complex scenarios include adaptive and responsive designs, which were developed to act on the results of such monitoring to implement prespecified options or alternatives in protocols. This paper discusses the development of an interactive web-based data visualization tool, the Adaptive Total Design (ATD) Dashboard, which we designed to provide a wide array of survey staff with the information needed to monitor data collection daily. The dashboard was built using the R programming language and Shiny framework and provides users with a wide range of functionality to quickly assess trends. We present the structure of the data used to populate the dashboard, its design, and the process for hosting it on the web. Furthermore, we provide guidance on graphic design, data taxonomy, and software decisions that can help guide others in the process of developing their own data collection monitoring systems. To illustrate the benefits of the dashboard, we present examples from the National Longitudinal Study of Adolescent to Adult Health (Add Health). We also discuss features of the dashboard to be developed for future waves of Add Health., (© 2019 Research Triangle Institute. All rights reserved.)
- Published
- 2019
- Full Text
- View/download PDF
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