1. Genetic and functional characterisation of the lactococcal P335 phage-host interactions
- Author
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Laurens Hanemaaijer, Jennifer Mahony, Joana Oliveira, Marco Ventura, Douwe van Sinderen, Horst Neve, Gabriele Andrea Lugli, Barry Collins, Christian Cambillau, Thijs R. H. M. Kouwen, School of Microbiology, University College Cork (UCC), Università degli studi di Parma [Parme, Italie], Dept Microbiol & Biotechnol, Max Rubner Inst, Architecture et fonction des macromolécules biologiques (AFMB), Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), Department of Microbiology, University College Cork, Università degli studi di Parma = University of Parma (UNIPR), University of Parma = Università degli studi di Parma [Parme, Italie], Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)-Institut National de la Recherche Agronomique (INRA), University College Cork ( UCC ), Università degli studi di Parma, Architecture et fonction des macromolécules biologiques ( AFMB ), and Centre National de la Recherche Scientifique ( CNRS ) -Aix Marseille Université ( AMU ) -Institut National de la Recherche Agronomique ( INRA )
- Subjects
0301 basic medicine ,viruses ,[ SDV.MP.BAC ] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology ,Proteomics ,Siphoviridae ,Bacteriophage ,Phage group ,Bacteriophages ,MESH: Genetic Variation ,MESH : Viral Proteins ,2. Zero hunger ,Genetics ,biology ,Dairy Fermentation ,MESH: Genomics ,Genomics ,MESH : Host Specificity ,MESH : Bacteriophages ,Lactococcus lactis ,[ SDV.BBM.GTP ] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,MESH: Calcium ,[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,DNA microarray ,Research Article ,Biotechnology ,MESH: Host Specificity ,Context (language use) ,[ SDV.MP.VIR ] Life Sciences [q-bio]/Microbiology and Parasitology/Virology ,Host Specificity ,Microbiology ,Dairy ,Viral Proteins ,03 medical and health sciences ,MESH : Genetic Variation ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,MESH: Bacteriophages ,MESH : Calcium ,Host (biology) ,MESH : Genomics ,Genetic Variation ,biology.organism_classification ,MESH: Viral Proteins ,[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology ,030104 developmental biology ,MESH: Lactococcus lactis ,Fermentation ,Receptor-binding protein ,Calcium ,MESH : Lactococcus lactis - Abstract
Background Despite continuous research efforts, bacterio(phages) infecting Lactococcus lactis starter strains persist as a major threat to dairy fermentations. The lactococcal P335 phages, which are currently classified into four sub-groups (I-IV), are the second most frequently isolated phage group in an industrial dairy context. Results The current work describes the isolation and comparative genomic analysis of 17 novel P335 group phages. Detailed analysis of the genomic region of P335 phages encoding the so-called “baseplate”, which includes the receptor binding protein (RBP) was combined with a functional characterization of the RBP of sub-group III and IV phages. Additionally, calcium-dependence assays revealed a specific requirement for calcium by sub-group IV phages while host range analysis highlighted a higher number of strains with CWPS type A (11 of 39 strains) are infected by the P335 phages assessed in this study than those with a C (five strains), B (three of 39 strains) or unknown (one of 39 strains) CWPS type. Conclusions These analyses revealed significant divergence among RBP sequences, apparently reflecting their unique interactions with the host and particularly for strains with a type A CWPS. The implications of the genomic architecture of lactococcal P335 phages on serving as a general model for Siphoviridae phages are discussed. Electronic supplementary material The online version of this article (doi:10.1186/s12864-017-3537-5) contains supplementary material, which is available to authorized users.
- Published
- 2017
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