1. Higher-Order Looping and Nuclear Organization of Tcra Facilitate Targeted RAG Cleavage and Regulated Rearrangement in Recombination Centers
- Author
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David G. Schatz, Iannis Aifantis, Panagiotis Ntziachristos, Mariann Micsinai, Joy M. H. Wang, Ludovic Deriano, Yuval Kluger, Jeffrey A. Jeddeloh, Elphège P. Nora, Matthew Rodesch, Julie Chaumeil, Yanhong Ji, Jane A. Skok, New York University School of Medicine (NYU), New York University School of Medicine, NYU System (NYU)-NYU System (NYU), Développement lymphocytaire et Oncogénèse, Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Génétique et Biologie du Développement, Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut Curie [Paris]-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Roche NimbleGen Inc., Yale Cancer Center, Yale School of Medicine [New Haven, Connecticut] (YSM), Yale University [New Haven], Howard Hughes Medical Institute (HHMI), This work is supported by the National Institute ofHealth: R01GM086852 (to J.A.S.), R37AI32524 (to D.G.S.), RO1CA133379,RO1CA105129, RO1CA149655, and RO1GM088847 (to I.A.). J.A.S. is aLeukemia & Lymphoma Society (LLS) scholar. J.C. is an Irvington Institute Fellow of the Cancer Research Institute. M.M. was supported by an NSFIGERT 0333389. L.D. was an LLS Fellow. E.P.N. was supported by the FrenchMinistry of Research and the Association pour la Recherche sur le Cancer(France). I.A. is also supported by the Leukemia & Lymphoma Society (TRPgrant), The V Foundation for Cancer Research, and the Dana Foundation.D.G.S. is an Investigator, and I.A. is an Early Career Scientist of the HowardHughes Medical Institute. The authors from Roche NimbleGen, Inc. (M.J.R.and J.A.J.) recognize a competing interest in this publication as employeesof the company., Lassailly-Bondaz, Anne, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Institut Curie [Paris]-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Pierre et Marie Curie - Paris 6 (UPMC), and Yale University School of Medicine
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Genome instability ,MESH: V(D)J Recombination ,Ataxia Telangiectasia Mutated Proteins ,Inbred C57BL ,MESH: Mice, Knockout ,Tumor Suppressor Proteins/metabolism ,Mice ,0302 clinical medicine ,Transcription (biology) ,Receptors ,Recombinase ,Medicine and Health Sciences ,MESH: Animals ,MESH: Ataxia Telangiectasia Mutated Proteins ,lcsh:QH301-705.5 ,DNA-Binding Proteins/genetics/*metabolism ,Genetics ,MESH: Histones ,0303 health sciences ,MESH: Mice, Inbred CBA ,MESH: Receptors, Antigen, T-Cell, alpha-beta ,biology ,MESH: Genomic Instability ,V(D)J recombination ,Protein-Serine-Threonine Kinases/metabolism ,Chromatin ,alpha-beta/genetics/*metabolism ,Histone ,Antigen ,[SDV.IMM]Life Sciences [q-bio]/Immunology ,MESH: Cell Nucleus ,[SDV.IMM] Life Sciences [q-bio]/Immunology ,Knockout ,Cleavage (embryo) ,DNA-binding protein ,MESH: Genetic Loci ,General Biochemistry, Genetics and Molecular Biology ,Genomic Instability ,MESH: Protein-Serine-Threonine Kinases ,03 medical and health sciences ,MESH: Cell Cycle Proteins ,MESH: Mice, Inbred C57BL ,MESH: Homeodomain Proteins ,Homeodomain Proteins/genetics/*metabolism ,Animals ,MESH: Tumor Suppressor Proteins ,MESH: Mice ,Alleles ,030304 developmental biology ,MESH: DNA Damage ,Histones/genetics ,Cell Cycle Proteins/metabolism ,MESH: Alleles ,Inbred CBA ,Biology and Life Sciences ,T-Cell ,lcsh:Biology (General) ,Genetic Loci ,Cell Nucleus/metabolism ,biology.protein ,030217 neurology & neurosurgery ,MESH: DNA-Binding Proteins ,V(D)J Recombination ,DNA Damage - Abstract
International audience; V(D)J recombination is essential for generating a diverse array of B and T cell receptors that can recognize and combat foreign antigens. As with any recombination event, tight control is essential to prevent the occurrence of genetic anomalies that drive cellular transformation. One important aspect of regulation is directed targeting of the RAG recombinase. Indeed, RAG accumulates at the 3' end of individual antigen receptor loci poised for rearrangement; however, it is not known whether focal binding is involved in regulating cleavage, and what mechanisms lead to enrichment of RAG in this region. Here, we show that monoallelic looping out of the 3' end of the T cell receptor α (Tcra) locus, coupled with transcription and increased chromatin/nuclear accessibility, is linked to focal RAG binding and ATM-mediated regulation of monoallelic cleavage on looped-out 3' regions. Our data identify higher-order loop formation as a key determinant of directed RAG targeting and the maintenance of genome stability.
- Published
- 2013
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