1. Genome wide association study of HTLV-1-associated myelopathy/tropical spastic paraparesis in the Japanese population
- Author
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Masao Matsuoka, Atae Utsunomiya, Masakazu Shimizu, Toshiki Watanabe, Eiji Matsuura, Mineki Saito, Norihiro Takenouchi, Tomoo Sato, Marina Penova, Hideo Hara, Yasuharu Tabara, Masako Iwanaga, Kunihiro Tsukasaki, Richard Paul, Meiko Takahashi, Yoshihisa Yamano, Shuji Kawaguchi, Fumihiko Matsuda, Shuji Izumo, Kaoru Uchimaru, Jun-ichirou Yasunaga, Takahisa Kawaguchi, Satoshi Nozuma, Hiroshi Takashima, Masanori Nakagawa, Graduate School of Medicine and Faculty of Medicine Kyoto University, Kyoto University, St. Marianna University School of Medicine [Kanagawa, Japan], Kawasaki Medical School [Kurashiki, Japan] (KMS), The University of Tokyo (UTokyo), Pasteur Kyoto International Joint Research Unit for Integrative Vaccinomics [Kyoto, Japan], Institut Pasteur [Paris] (IP), Kumamoto University, and This study was supported in part by the Japanese Ministry of Health, Labor, and Welfare (Grant 201331002B), the Japan Agency of Medical Research and Development (Grants 16ek0109070h0003, 18kk0205008h0003, 19ek0109348h0002, and 19ek0109283h0003), and the Kyoto University Grant for Top Global University Japan Project and Grant-in-Aid for Scientific Research on Innovative Areas–Platforms for Advanced Technologies and Research Resources (16H06277).
- Subjects
0301 basic medicine ,MESH: Paraparesis, Tropical Spastic ,proviral load ,Genome-wide association study ,Human leukocyte antigen ,Biology ,Polymorphism, Single Nucleotide ,03 medical and health sciences ,Myelopathy ,0302 clinical medicine ,Japan ,immune system diseases ,HLA Antigens ,hemic and lymphatic diseases ,Tropical spastic paraparesis ,medicine ,Genetics ,Humans ,Genotyping ,Allele frequency ,MESH: HLA Antigens ,Genetic association ,MESH: Japan ,[SDV.MHEP.ME]Life Sciences [q-bio]/Human health and pathology/Emerging diseases ,Human T-lymphotropic virus 1 ,Multidisciplinary ,MESH: Human T-lymphotropic virus 1 ,MESH: Humans ,genome-wide association study ,MESH: Polymorphism, Single Nucleotide ,virus diseases ,Chromosome Mapping ,Odds ratio ,Viral Load ,Biological Sciences ,medicine.disease ,Paraparesis, Tropical Spastic ,HLA ,030104 developmental biology ,HTLV-1 ,Immunology ,MESH: Genome-Wide Association Study ,MESH: Chromosome Mapping ,MESH: Viral Load ,HAM/TSP ,030217 neurology & neurosurgery - Abstract
Significance Human T cell leukemia virus type 1 (HTLV-1) proviral load is associated with the risk of developing HTLV-1–associated myelopathy/tropical spastic paraparesis (HAM/TSP) and several small-scale candidate gene approaches have also identified associations of particular HLA alleles with HAM/TSP risk. However, no large-scale genome-wide association (GWA) studies have been performed to date. By a large-scale GWA study and comprehensive genotyping of classical HLA genes, we found that HLA-DRB1 alleles carrying leucine at the antigen presentation groove domain (DRB1-GB-7-Leu) increased the susceptibility to HAM/TSP. Individuals who were homozygous for DRB1-GB-7-Leu had a ninefold increased odds of developing HAM/TSP. This effect of DRB1-GB-7-Leu was independent of proviral load. These findings identify DRB1-GB-7-Leu as a genetic risk marker of HAM/TSP development., HTLV-1–associated myelopathy (HAM/TSP) is a chronic and progressive inflammatory disease of the central nervous system. The aim of our study was to identify genetic determinants related to the onset of HAM/TSP in the Japanese population. We conducted a genome-wide association study comprising 753 HAM/TSP patients and 899 asymptomatic HTLV-1 carriers. We also performed comprehensive genotyping of HLA-A, -B, -C, -DPB1, -DQB1, and -DRB1 genes using next-generation sequencing technology for 651 HAM/TSP patients and 804 carriers. A strong association was observed in HLA class I (P = 1.54 × 10−9) and class II (P = 1.21 × 10−8) loci with HAM/TSP. Association analysis using HLA genotyping results showed that HLA-C*07:02 (P = 2.61 × 10−5), HLA-B*07:02 (P = 4.97 × 10−10), HLA-DRB1*01:01 (P = 1.15 × 10−9) and HLA-DQB1*05:01 (P = 2.30 × 10−9) were associated with disease risk, while HLA-B*40:06 (P = 3.03 × 10−5), HLA-DRB1*15:01 (P = 1.06 × 10−5) and HLA-DQB1*06:02 (P = 1.78 × 10−6) worked protectively. Logistic regression analysis identified amino acid position 7 in the G-BETA domain of HLA-DRB1 as strongly associated with HAM/TSP (P = 9.52 × 10−10); individuals homozygous for leucine had an associated increased risk of HAM/TSP (odds ratio, 9.57), and proline was protective (odds ratio, 0.65). Both associations were independent of the known risk associated with proviral load. DRB1-GB-7-Leu was not significantly associated with proviral load. We have identified DRB1-GB-7-Leu as a genetic risk factor for HAM/TSP development independent of proviral load. This suggests that the amino acid residue may serve as a specific marker to identify the risk of HAM/TSP even without knowledge of proviral load. In light of its allele frequency worldwide, this biomarker will likely prove useful in HTLV-1 endemic areas across the globe.
- Published
- 2021
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