1. rs11886868 and rs4671393 of BCL11A associated with HbF level variation and modulate clinical events among sickle cell anemia patients
- Author
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Imen Moumni, Leila Chaouch, Imen Boudrigua, Dorra Chaouachi, Miniar Kalai, Houyem Ouragini, Raouf Hafsia, Salem Abbes, Imen Darragi, Laboratoire d'hématologie moléculaire et cellulaire (LR11IPT07), Institut Pasteur de Tunis, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Université de Tunis El Manar (UTM), and LR11IPT07
- Subjects
0301 basic medicine ,Male ,[SDV]Life Sciences [q-bio] ,BCL11A gene ,MESH: Genotype ,0302 clinical medicine ,Gene Frequency ,hemic and lymphatic diseases ,Genotype ,MESH: Anemia, Sickle Cell/blood ,Fetal Hemoglobin ,education.field_of_study ,MESH: Anemia, Sickle Cell/genetics ,MESH: Polymorphism, Single Nucleotide ,Nuclear Proteins ,[SDV.MHEP.HEM]Life Sciences [q-bio]/Human health and pathology/Hematology ,Hematology ,Phenotype ,Sickle cell anemia ,3. Good health ,030220 oncology & carcinogenesis ,Female ,Adult ,congenital, hereditary, and neonatal diseases and abnormalities ,Population ,MESH: Nuclear Proteins/genetics ,MESH: Fetal Hemoglobin/genetics ,Anemia, Sickle Cell ,Biology ,Polymorphism, Single Nucleotide ,03 medical and health sciences ,MESH: Carrier Proteins/genetics ,Fetal hemoglobin ,medicine ,MESH: Fetal Hemoglobin/metabolism ,MESH: Gene Frequency ,Humans ,education ,Allele frequency ,Genotyping ,Gene ,Retrospective Studies ,MESH: Humans ,HbF ,MESH: Adult ,MESH: Retrospective Studies ,medicine.disease ,MESH: Male ,Repressor Proteins ,030104 developmental biology ,Immunology ,Carrier Proteins ,MESH: Female - Abstract
International audience; Aims: Fetal hemoglobin (HbF) modulates the phenotype of sickle cell anemia (SCA) by inhibiting deoxy sickle hemoglobin (HbS) polymerization. HbF genes are genetically regulated, and the level of HbF and its distribution among sickle erythrocytes is highly variable. Herein, we aimed to determine whether two functional polymorphisms of BCL11A are implicated in the variation of HbF and clinical events in SCA Tunisian patients. Material and methods: The studied population consisted of 148 SCA patients with SS phenotype. The group of patients was divided into two subgroups according to the threshold point of %HbF which is 15%. Genotyping of rs11886868 and rs4671393 was performed using PCR/Sequencing. To test for trait association with the candidate SNPs, genotype and allele frequencies between `group who had %HbF < 15' and `group who had %HbF > 15' (controls) were compared using Pearson's chi-square test (compare 2, version 1.02). The association of each genotype and the combined genotype with complications was performed by logistic regression test. Results: Our findings showed that the majority of patients carried genotype CT of rs11886868 and genotypes AG and GG of rs4671393 present HbF level < 15%. RR = 0.08, RR = 0.176, and RR = 0.189, respectively. The results showed a significant association between the alleles T of rs11886868 and G of rs4671393 and %HbF < 15% with P = 0.016; RR = 0.39 and P = 8.9 x 10(-3): RR = 0.567, respectively. Interestingly, the C allele of the rs11886868 and the A allele of the rs46713939 were associated with an ameliorated phenotype in patient's SCA. The combination of the genotypes GG and CT explains more phenotypic variance than the sum of the two BCL11A SNPs taken individually.
- Published
- 2016
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