1. Novel genes and insights in complete asthma remission: A genome-wide association study on clinical and complete asthma remission
- Author
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Don D. Sin, Anne Boudier, Nicole Probst-Hensch, F. N. Dijk, Ke Hao, Judith M. Vonk, Yohan Bossé, Maartje A.E. Nieuwenhuis, Valérie Siroux, Medea Imboden, Emmanuelle Bouzigon, M. van den Berge, Gerard H. Koppelman, Dirk Keidel, Alen Faiz, Dirkje S. Postma, Siroux, Valérie, University Medical Center Groningen [Groningen] (UMCG), Institute for Advanced Biosciences / Institut pour l'Avancée des Biosciences (Grenoble) (IAB), Centre Hospitalier Universitaire [Grenoble] (CHU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Etablissement français du sang - Auvergne-Rhône-Alpes (EFS)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019]), Université Grenoble Alpes (UGA), Variabilité Génétique et Maladies Humaines, Institut Universitaire d'Hématologie (IUH), Université Paris Diderot - Paris 7 (UPD7)-Université Paris Diderot - Paris 7 (UPD7)-Institut National de la Santé et de la Recherche Médicale (INSERM), Swiss Tropical and Public Health Institute [Basel], University of Basel (Unibas), University of British Columbia (UBC), Institut Universitaire de Cardiologie et de Pneumologie de Québec (IUCPQ), Université Laval [Québec] (ULaval), Merck Research Laboratories, Centre Hospitalier Universitaire [Grenoble] (CHU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Etablissement français du sang - Auvergne-Rhône-Alpes (EFS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019]), and Groningen Research Institute for Asthma and COPD (GRIAC)
- Subjects
0301 basic medicine ,Oncology ,Male ,Allergy ,MESH: Asthma ,CHILDHOOD ,IL1RL1 ,Genome-wide association study ,Spontaneous remission ,MESH: Respiratory Function Tests ,[SDV.GEN] Life Sciences [q-bio]/Genetics ,[SDV.MHEP.PSR]Life Sciences [q-bio]/Human health and pathology/Pulmonology and respiratory tract ,DISEASE ,RESPONSIVENESS ,MESH: Genotype ,0302 clinical medicine ,MESH: Respiratory Mucosa ,Immunology and Allergy ,ADENOSINE 5'-MONOPHOSPHATE ,MESH: Genetic Association Studies ,MESH: Middle Aged ,MESH: Polymorphism, Single Nucleotide ,MESH: Genetic Predisposition to Disease ,MESH: Patient Outcome Assessment ,Middle Aged ,MESH: Gene Expression Regulation ,3. Good health ,Respiratory Function Tests ,Phenotype ,Bronchial hyperresponsiveness ,Female ,Bronchial Hyperreactivity ,MESH: Computational Biology ,Adult ,medicine.medical_specialty ,Genotype ,Immunology ,Quantitative Trait Loci ,SPUTUM EOSINOPHILS ,PHENOTYPES ,Single-nucleotide polymorphism ,Respiratory Mucosa ,MESH: Molecular Sequence Annotation ,MESH: Phenotype ,Polymorphism, Single Nucleotide ,03 medical and health sciences ,Internal medicine ,medicine ,Humans ,Genetic Predisposition to Disease ,Alleles ,Genetic Association Studies ,Asthma ,[SDV.GEN]Life Sciences [q-bio]/Genetics ,MESH: Humans ,business.industry ,MESH: Alleles ,MESH: Bronchial Hyperreactivity ,IL18R1 ,Computational Biology ,Molecular Sequence Annotation ,MESH: Adult ,ADULTS ,medicine.disease ,MESH: Quantitative Trait Loci ,MESH: Male ,respiratory tract diseases ,Patient Outcome Assessment ,030104 developmental biology ,030228 respiratory system ,Gene Expression Regulation ,[SDV.SPEE] Life Sciences [q-bio]/Santé publique et épidémiologie ,Expression quantitative trait loci ,MESH: Genome-Wide Association Study ,RISK-FACTORS ,[SDV.MHEP.PSR] Life Sciences [q-bio]/Human health and pathology/Pulmonology and respiratory tract ,[SDV.SPEE]Life Sciences [q-bio]/Santé publique et épidémiologie ,FOLLOW-UP ,business ,MESH: Female ,Genome-Wide Association Study - Abstract
© 2018 John Wiley & Sons Ltd Background: Asthma is a chronic respiratory disease without a cure, although there exists spontaneous remission. Genome-wide association (GWA) studies have pinpointed genes associated with asthma development, but did not investigate asthma remission. Objective: We performed a GWA study to develop insights in asthma remission. Methods: Clinical remission (ClinR) was defined by the absence of asthma treatment and wheezing in the last year and asthma attacks in the last 3 years and complete remission (ComR) similarly but additionally with normal lung function and absence of bronchial hyperresponsiveness (BHR). A GWA study on both ClinR and ComR was performed in 790 asthmatics with initial doctor diagnosis of asthma and BHR and long-term follow-up. We assessed replication of the 25 top single nucleotide polymorphisms (SNPs) in 2 independent cohorts (total n = 456), followed by expression quantitative loci (eQTL) analyses of the 4 replicated SNPs in lung tissue and epithelium. Results: Of the 790 asthmatics, 178 (23%) had ClinR and 55 ComR (7%) after median follow-up of 15.5 (range 3.3-47.8) years. In ClinR, 1 of the 25 SNPs, rs2740102, replicated in a meta-analysis of the replication cohorts, which was an eQTL for POLI in lung tissue. In ComR, 3 SNPs replicated in a meta-analysis of the replication cohorts. The top-hit, rs6581895, almost reached genome-wide significance (P-value 4.68 × 10−7) and was an eQTL for FRS2 and CCT in lung tissue. Rs1420101 was a cis-eQTL in lung tissue for IL1RL1 and IL18R1 and a trans-eQTL for IL13. Conclusions and Clinical Relevance: By defining a strict remission phenotype, we identified 3 SNPs to be associated with complete asthma remission, where 2 SNPs have plausible biological relevance in FRS2, CCT, IL1RL1, IL18R1 and IL13.
- Published
- 2018
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