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One indigenous water buffalo population to Anatolia was characterised with 11 cattle autosomal microsatellite loci. A set of 4 cattle microsatellite loci was found to be polymorphic in the Anatolian buffalo genome. Genotyping of these polymorphic microsatellite loci revealed alleles ranging from 3 to 9. The observed heterozygosity ranged from 0.550 to 0.775 and the expected heterozygosity ranged from 0.494 to 0.815. The FIS value within each locus, changed from –0.101 to 0.205. Total FIS was 0.043 indicating that Anatolian water buffalo population samples seemed to be in Hardy- Weinberg expectation.

In Turkey most farmers keep 1-2 buffaloes for family consumption and this system is very widespread in villages while farms with around 100 heads are located near to the big cities. These two most common housing systems were used to contribute to the somatic characterization of Anatolian buffalo in the context of a wide typification programme of this buffalo aimed to improve its productive and reproductive potentiality in agreement with a sustainable development. 76 males and 127 females of the Istanbul district and 32 males and 70 females raised in Danamandra vıllage of Silivri district were measured. On each buffalo, withers height, rump height, body length, chest depth and chest width were determined. The results showed a significant difference between males and females starting from 12 months in buffaloes of Danamandra village and from 3 years of age in animals of Istanbul district.