1,335 results on '"M. Siddiqui"'
Search Results
2. 'Real-life' data of the efficacy and safety of belantamab mafodotin in relapsed multiple myeloma—the Mayo Clinic experience
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I. Vaxman, J. Abeykoon, A. Dispenzieri, S. K. Kumar, F. Buadi, M. Q. Lacy, D. Dingli, Y. Hwa, A. Fonder, M. Hobbs, C. Reeder, T. Sher, S. Hayman, T. Kourelis, R. Warsame, E. Muchtar, N. Leung, R. Go, W. Gonsalves, M. Siddiqui, R. A. Kyle, S. V. Rajkumar, McCullough Kristen, P. Kapoor, and M. A. Gertz
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Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Belantamab mafodotin is a highly selective targeted therapy for multiple myeloma. It targets the B cell maturation antigen (BCMA) on plasma cells and showed promising results in several randomized clinical trials. We report the outcomes of 36 patients treated at Mayo Clinic. Our cohort received a median of eight prior lines of therapy. Six patients received belantamab in combination with other medications (pomalidomide, cyclophosphamide, thalidomide), 13 patients (36%) were 70 years or older, two patients had a creatinine of >2.5 mg/dL, and one patient was on dialysis. All three patients with renal failure received full dose belantamab. Chimeric antigen receptor (CAR-T) therapy was used prior to belantamab in seven patients and none of them responded to belantamab therapy. The overall response rate (ORR) was 33% (CR 6%, VGPR 8%, PR 19%), like the ORR reported in the DREAMM-2 trial. Keratopathy developed in 16 patients (43%), grade 1 in six patients, grade 2 in seven patients, and grade 3 in three patients. Eight percent discontinued therapy due to keratopathy. The median PFS and OS was 2 months and 6.5 months, respectively.
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- 2021
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3. Herniation of the Anterior Wall of the Stomach into a Congenital Postdiaphragmatic Space: An Unusual Complication following Laparoscopic Nissen Fundoplication
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A. Eisawi, A. Al-Temimi, Mohamed Dirie, S. Bukhari, and M. Siddiqui
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Medicine - Abstract
Postoperative herniation of the stomach into potential spaces is a rare but serious complication of Nissen fundoplication. We report a 55-year-old female who presented with persistent vomiting shortly following laparoscopic Nissen fundoplication. At laparotomy, the anterior wall of the stomach was noted to be herniating into a congenital space behind the diaphragm. Anterior gastropexy was performed following the reduction of the herniating gastric segment. A high index of suspicion followed by aggressive and timely intervention is necessary to diagnose and manage postoperative gastric herniation and reduce the subsequent morbidity and mortality.
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- 2010
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4. Patterns of Care in the Diagnosis and Management of Intracranial Atherosclerosis‐Related Large‐Vessel Occlusion: The Rescue‐LVO Survey
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Fazeel M. Siddiqui, Jeffrey J. Fletcher, Augusto E. Elias, Sudeepta Dandapat, Sushant P. Kale, Daniel Heiferman, Loren Riedy, Mudassir Farooqui, Aaron Rodriguez‐Calienes, Juan Vivanco‐Suarez, Aditya S. Pandey, and Santiago Ortega‐Gutierrez
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atherosclerosis ,imaging ,stroke ,thrombectomy ,Neurology. Diseases of the nervous system ,RC346-429 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background We aimed to determine the current practice patterns among neurointerventional practitioners frequently involved in treating intracranial atherosclerosis‐related large‐vessel occlusion (ICAS‐LVO) during mechanical thrombectomy. Methods We conducted an international online survey of neurointerventionalist members of the Society of Vascular and Interventional Neurology and Society of Neurointerventional Surgery. The 28‐question poll evaluated the preferences on diagnosis, treatment, and endovascular approach to ICAS‐LVO. Results A total of 184 individual survey responses were obtained from practicing neurointerventional physicians. Overall, 38.3% reported an incidence of 6% to 10% of ICAS‐LVO during mechanical thrombectomy. Most neurointerventionalists (91%) diagnose ICAS‐LVO after a continued or recurrent occlusion or by the presence of fixed focal stenosis after multiple mechanical thrombectomy attempts. Most respondents (86%) preferred acute treatment of ICAS‐LVO with rescue stenting (RS)±angioplasty. However, in patients who achieved recanalization with a severe fixed focal stenosis, most (58%) recommended primary medical management. The preferred medication during acute RS was intravenous antiplatelet therapy (65%), and after acute RS, it was dual oral antiplatelet therapy (65%). Fear of hemorrhagic complications (74%) was the most compelling reason not to perform RS±angioplasty. Of respondents, 24% were hesitant to randomize patients to acute RS versus medical therapy in a future randomized trial because of the lack of sensitive and specific biomarkers to diagnose ICAS‐LVO before mechanical thrombectomy treatment. Conclusions The findings of this survey highlight the variations in practice in the medical and endovascular management of ICAS‐LVO. In addition, it informs the situation of equipoise in the treatment decision in ICAS‐LVO, which can then be incorporated into the design of future randomized clinical trials.
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- 2024
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5. Abstract 056: Patterns of Care in the Management of Intracranial Atherosclerosis‐related Large Vessel Occlusion–the RESCUE‐LVO survey
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Fazeel M. Siddiqui, Jeffrey J. Fletcher, Augusto E. Elias, Sudeepta Dandapat, Sushant P. Kale, Daniel Heiferman, Loren Riedy, Mudassir Farooqui, Aaron Rodriguez Calienes, Juan Vivanco‐Suarez, Aditya S. Pandey, and Santiago Ortega‐Gutierrez
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Neurology. Diseases of the nervous system ,RC346-429 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Introduction Intracranial atherosclerosis‐related large vessel occlusion (ICAS‐LVO) is a common cause of failed mechanical thrombectomy (MT) in acute ischemic stroke (AIS) [1]. Treatment of ICAS‐LVO with rescue stenting and/or angioplasty has shown promising outcomes, but diagnosing ICAS‐LVO during MT can be challenging [2, 3]. There are uncertainties regarding optimal approaches, techniques, and timing for treating ICAS‐LVO. To understand current practice patterns and address these uncertainties, we conducted a survey among neurointerventional practitioners experienced in ICAS‐LVO management during MT. Methods We conducted an international online survey of neurointerventionalist members of the Society of Neurointerventional Surgery (SNIS) and the Society of Vascular and Interventional Neurology (SVIN). The 28‐question poll evaluated the preferences on diagnosis, treatment, and endovascular approach to ICAS‐LVO. Results 168 individual survey responses were obtained from practicing neurointerventional physicians. Overall, 40.6% reported an incidence of 6–10% of ICAS‐LVO during MT. Most neurointerventionalists (91%) diagnose ICAS‐LVO after a continued or recurrent occlusion or by the presence of fixed focal stenosis (FFS) after multiple MT attempts. Most respondents (86%) preferred acute treatment of ICAS‐LVO with rescue stenting (RS) +/‐ angioplasty. However, in patients who achieved recanalization with a severe FFS, the majority (44%) recommended maximal medical management only. The preferred medication during acute RS was intravenous antiplatelet therapy (69%), and after acute RS was dual oral antiplatelet therapy (58%). Fear of hemorrhagic complications (70%) was the most compelling reason not to perform RS +/‐ angioplasty. Twenty‐five percent of respondents were hesitant to randomize patients to acute RS versus medical therapy in a future randomized trial because of the lack of sensitive and specific biomarkers to diagnose ICAS‐LVO before MT treatment. Conclusion Our survey highlights the significant variability and uncertainty in the diagnosis and management of ICAS‐LVO during MT among neurointerventional practitioners. There is no equipoise regarding the optimal treatment strategy, and the fear of hemorrhagic complications associated with antithrombotic medications contributes to the variation in practice. Our survey underscores the need for future research and randomized clinical trials to address the uncertainties in the management of ICAS‐LVO during MT. Improved imaging biomarkers and consensus guidelines are essential to guide clinical decision‐making and optimize patient outcomes in this challenging population of AIS patients.
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- 2023
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6. Abstract 231: Rescue Stenting for Failed Mechanical Thrombectomy in Acute Ischemic Stroke:An Analysis of the SVIN Registry
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Aaron C. Rodriguez‐Calienes, Diogo Haussen, Mahmoud H. Mohammaden, Raul G. Nogueira, Alhamza R. Al‐Bayati, Ameer E. Hassan, Wondwossen G. Tekle, Souhm K. Desai, Juan Vivanco‐Suarez, Milagros Galecio‐Castillo, Johanna T. Fifi, Shahram Majidi, Stavros Matsoukas, James E. Siegler, Pratit D. Patel, Tudor G. Jovin, Sunil A. Sheth, Sergio Salazar‐Marioni, Thanh N. Nguyen, Mohamad Abdalkader, Italo Linfante, Guilherme Dabus, Brijesh P. Mehta, Fazeel M. Siddiqui, and Santiago Ortega‐Gutierrez
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Neurology. Diseases of the nervous system ,RC346-429 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Introduction Mechanical thrombectomy (MT) often fails to achieve successful reperfusion in up to 20% of acute ischemic stroke (AIS) patients with large vessel occlusion (LVO) [1, 2]. Rescue strategies options, including balloon angioplasty alone, rescue stenting (RS) alone, or stent with balloon angioplasty, have shown promise in observational studies and meta‐analyses [3, 4]. We aimed to evaluate the association between RS with functional outcomes compared to medical management (MM) in anterior circulation LVO‐AIS patients who underwent failed MT. Methods This retrospective cohort study utilized prospectively collected data from the Society of Vascular and Interventional Neurology (SVIN) Registry, including adult patients with AIS who experienced a failed MT at 14 comprehensive stroke centers. A failed MT was defined as a modified Thrombolysis in Cerebral Infarction (mTICI) score of 0 to 2a after multiple attempts to clot retrieval. The patients were divided into two groups: those who received RS and those who only received MM. The primary efficacy outcome was the shift in the degree of disability, as measured by the modified Rankin Scale (mRS), at 90 days. Additional outcomes included functional independence (defined as a 90‐day mRS score of 0‐2), symptomatic intracranial hemorrhage (sICH), and mortality at 90 days. These outcomes were assessed using uni‐ and multivariable logistic regression models. Results A total of 642 patients were included in the analysis. The RS group consisted of 294 (45.8%) patients, while the MM group comprised 348 (54.2%) patients. A mTICI score of 2b‐3 was achieved in 242/293 (82.6%) patients in the RS group. Compared to the MM group, the RS showed a favorable shift in the overall 90‐day mRS distribution (adjusted common odds ratio [OR]=1.97, 95% CI 1.36–2.85, p=
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- 2023
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7. Relativistic ultrafast electron diffraction at high repetition rates
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K. M. Siddiqui, D. B. Durham, F. Cropp, F. Ji, S. Paiagua, C. Ophus, N. C. Andresen, L. Jin, J. Wu, S. Wang, X. Zhang, W. You, M. Murnane, M. Centurion, X. Wang, D. S. Slaughter, R. A. Kaindl, P. Musumeci, A. M. Minor, and D. Filippetto
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Crystallography ,QD901-999 - Abstract
The ability to resolve the dynamics of matter on its native temporal and spatial scales constitutes a key challenge and convergent theme across chemistry, biology, and materials science. The last couple of decades have witnessed ultrafast electron diffraction (UED) emerge as one of the forefront techniques with the sensitivity to resolve atomic motions. Increasingly sophisticated UED instruments are being developed that are aimed at increasing the beam brightness in order to observe structural signatures, but so far they have been limited to low average current beams. Here, we present the technical design and capabilities of the HiRES (High Repetition-rate Electron Scattering) instrument, which blends relativistic electrons and high repetition rates to achieve orders of magnitude improvement in average beam current compared to the existing state-of-the-art instruments. The setup utilizes a novel electron source to deliver femtosecond duration electron pulses at up to MHz repetition rates for UED experiments. Instrument response function of sub-500 fs is demonstrated with < 100 fs time resolution targeted in future. We provide example cases of diffraction measurements on solid-state and gas-phase samples, including both micro- and nanodiffraction (featuring 100 nm beam size) modes, which showcase the potential of the instrument for novel UED experiments.
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- 2023
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8. On-line adaptive and real-time intrafraction motion management of spine-SBRT on an MR-linac
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Justine M. Cunningham, Karen Chin Snyder, Joshua P. Kim, Salim M. Siddiqui, Parag Parikh, Indrin J. Chetty, and Jennifer L. Dolan
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MR-linac ,spine ,SBRT (stereotactic body radiation therapy) ,adaptive ,IGRT (image guided radiation therapy) ,SRS (stereotactic radiosurgery) ,Physics ,QC1-999 - Abstract
Purpose: The superior soft-tissue contrast of MRI-guided radiotherapy offers enhanced localization accuracy of the spinal cord in spine Stereotactic Body Radiotherapy (SBRT). This work includes a planning study for spine-SBRT on an MR-Linac. Additionally, a patient with spine metastasis was treated using an adaptive radiation therapy workflow. We report our initial experience of targeting accuracy, image-guided localization, on-line adaptive planning, and treatment with real-time intrafraction imaging with automatic beam gating.Methods: Six spine-SBRT patients were retrospectively re-planned to 18 Gy in 1-fraction on a commercial, Monte Carlo-based MR-Linac treatment planning system. Plans were generated using 9–13 step-and-shoot intensity-modulated radiation therapy 6 MV-flattening filter free beams and optimized to achieve plan quality criteria recommended by RTOG-0631. One thoracic vertebral body clinical case was treated to 27 Gy in 3-fractions utilizing ART, where daily anatomical changes were accounted for via re-planning and treatment in an on-line manner to account for limited ability to correct rotational setup uncertainties.Results: Plans met all critical-tissue constraints outlined in RTOG-0631 and AAPM Task Group-101, while covering 90% of the target with the prescription dose. Clinically, visibility of the spinal cord allowed for patient setup focusing on spinal cord-alignment. Utilization of the online ART workflow, while re-contouring the target and spinal cord, enabled an increase in prescription dose coverage from 89 to 95% in two of three fractions while maintaining acceptable doses to organs-at-risk. Real-time MR-cine imaging demonstrated sufficient quality for the automatic beam gating algorithm to provide intrafraction motion management of the spinal canal utilizing a 3.0 mm gating boundary and 1–2% region of excursion allowance, in the sagittal plane. A decrease in coverage, below the 95% threshold was noted in post-treatment volumetric imaging due to lateral movement not observed during real-time gating.Conclusion: Achieved plan quality and deliverability was within accepted standards. MR-guidance with an on-line ART workflow offered increased accuracy in the localization of the spinal cord at the time of treatment to enhance both tissue sparing and target volume coverage. Increased spatial resolution of cine-images, and tracking in three-dimensions would be beneficial for future spine-SBRT treatments on the MR-Linac.
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- 2022
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9. A 10T SRAM Cell with Enhanced Read Sensing Margin and Weak NMOS Keeper for Large Signal Sensing to Improve VDDMIN.
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M. Sultan M. Siddiqui, Sudhir Kumar Sharma, Saurabh Porwal, Khatik Bhagvan Pannalal, and Sudhir Kumar 0002
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- 2019
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10. Evidence of nested quasi-one-dimensional Fermi surface and decoupled charge-lattice orders in layered TaTe_{2}
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Yi Lin, Maximillian Huber, Sangeeta Rajpurohit, Yanglin Zhu, Khalid M. Siddiqui, Daniel H. Eilbott, Luca Moreschini, Ping Ai, Jonathan D. Denlinger, Zhiqiang Mao, Liang Z. Tan, and Alessandra Lanzara
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Physics ,QC1-999 - Abstract
The formations of charge and lattice orders are generally coupled in charge density wave (CDW) materials and share identical order wave vectors. Although this situation is usually satisfied in a large class of two-dimensional materials, it falls short in describing the so-called CDW-like phase transition in layered tantalum ditelluride (TaTe_{2}), accompanied by anomalous low temperature transport properties and a periodic lattice distortion (PLD). Here we combine angle-resolved photoemission spectroscopy and low energy electron diffraction to directly access the charge and lattice structures in 1T-polytypic TaTe_{2} and study the anomalous phase transition. Our data reveal the presence of a surprising quasi-one-dimensional Fermi surface with nesting (FSN) condition, despite its van der Waals layered structure. We find that the wave vectors of the FSN and PLD are different, suggesting the decoupled formation between charge and lattice orders. These conditions are accompanied by rich footprints in band structure, including Fermi surface suppression, minigaps, and satellite bands. Our results suggest that TaTe_{2} manifests intrinsic mixed dimensionality between its electronic and lattice structure and that the CDW-like phase transition is likely governed by multiple mechanisms. Our work provides routes for forging unconventional CDW phases and charge-lattice entanglement that would otherwise not be available in materials with fixed dimensionality.
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- 2022
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11. An Uncommon Presentation of Carcinosarcoma of the Stomach and a Minimally Invasive Approach for Treatment
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Anoush Calikyan, Agedi N. Boto, Valeriia Klymenko, and Imran M. Siddiqui
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Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Carcinosarcoma is a rare malignant neoplasm that is composed of both epithelial and mesenchymal tumor components. Gastric carcinosarcoma is even more rare and is often diagnosed at a late stage. In this report, we investigate a case of early gastric carcinosarcoma with regional lymph node metastasis in a 78-year-old woman. The patient underwent partial gastrectomy, lymphadenectomy, and splenectomy. The tumor was confined to the gastric submucosa, and a biopsy specimen led to a histological diagnosis of carcinosarcoma with adenocarcinoma, squamous-cell carcinoma, and undifferentiated pleomorphic sarcoma components. Metastasis was present in one lymph node and displayed osteosarcomatous differentiation. Vigilant monitoring for recurrence and metastatic disease will be required for this patient.
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- 2022
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12. A 7-Nm Dual Port 8T SRAM with Duplicated Inter-Port Write Data to Mitigate Write Disturbance.
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M. Sultan M. Siddiqui, Sumit Srivastav, Dattatray Ramrao Wanjul, Manankumar Suthar, and Sudhir Kumar 0002
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- 2018
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13. Fast Convergence Algorithms for Coherence Optimization of Rank-1 Grassmannian Codebooks
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F. Akram, I. Rashid, A. Ghafoor, and A. M. Siddiqui
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Grassmannian codebooks ,hybrid metaheuristics ,numerical optimization ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Best Complex Antipodal Spherical Codes (BCASC) and Coherence Based Grassmannian Codebooks (CBGC) are state of the art algorithms to produce minimal coherence codebooks, however have high running time (relatively more in BCASC search than CBGC algorithm) which restricts their wider application. BCASC and CBGC algorithms are modified in a novel way by incorporating additional parameters adapted to three categories of codebooknovercompleteness to check stagnance of optimization and divergent behaviour to achieve faster convergence. The proposed algorithms are compared with BCASC and CBGC algorithms to achieve similar coherence results in much less time.
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- 2019
14. A retrospective study to assess visual field improvement following augmented trabeculectomy
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Clarissa E H Fang, Mohamad T Hakim, Muhammad M Siddiqui, Deborah Armstrong, and Vikas Shankar
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Ophthalmology - Published
- 2023
15. Epitaxial Growth of Aurivillius Bi3Fe2Mn2Ox Supercell Thin Films on Silicon
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James P. Barnard, Robynne L. Paldi, Matias Kalaswad, Zihao He, Hongyi Dou, Yizhi Zhang, Jianan Shen, Dongqi Zheng, Neil R. Dilley, Raktim Sarma, Aleem M. Siddiqui, Peide D. Ye, and Haiyan Wang
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General Materials Science ,General Chemistry ,Condensed Matter Physics - Published
- 2023
16. A 16kb column-based split cell-VSS, data-aware write-assisted 9T ultra-low voltage SRAM with enhanced read sensing margin in 28nm FDSOI.
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M. Sultan M. Siddiqui, Zhao Chuan Lee, and Tony Tae-Hyoung Kim
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- 2017
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17. Evolution of Minimally Invasive Adrenal Surgery at a Tertiary Care Centre in Oman
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Najeeb AbuDraz, Mohamed S Al-Masruri, Ghalib Al Badaai, Yamam Al-Shamari, Omayma Elshafie, and Khurram M Siddiqui
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General Medicine - Abstract
Objectives: This study aimed to review the case records and report the outcomes of open and laparoscopic adrenalectomy (LA) cases. Methods: This retrospective study included patients who underwent adrenal surgery from January 2010 to December 2020 at Sultan Qaboos University, Muscat, Oman. Demographic details, indications, surgical approaches, intra-operative data, complications, final pathology and outcome at the last follow-up were analysed. Results: A total of 52 patients underwent 61 adrenalectomies; six patients had a bilateral procedure while three patients had to undergo revision surgery resulting in a total of 55 individual procedures. Open adrenalectomy (OA) was performed on 11 patients and 44 patients underwent LA. Most patients (n = 27) were obese with a body mass index >30. Functional adenoma was excised in 36 patients with final diagnosis of Conn’s syndrome in 15, pheochromocytoma in 13 and Cushing’s syndrome in nine patients. Five patients had surgery for oncological indications. Non-functional adenoma was excised in 13 patients, with a mean size of 8.9 cm (range: 4–15 cm). The mean duration of surgery was less in laparoscopic procedure compared to open (199 versus 246 minutes). The mean estimated blood loss in LA was significantly less (108 versus 450 mL; P
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- 2023
18. Exact Solution of Unsteady Tank Drainage for Ellis Fluid
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K. N. Memon, S. F. Shah, and A A. M. Siddiqui
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Tank drainage ,Ellis fluid ,Exact solution. ,Mechanical engineering and machinery ,TJ1-1570 - Abstract
In this work, we investigate the the problem of an unsteady tank drainage while considering an isothermal and incompressible Ellis fluid. Exact solution is gotten for a resulting non-linear PDE (partial differential equation)-subject to proper boundary conditions-. The special cases such as Newtonian, Power law, and as well as Bingham solution are retrieved from this suggested model of Ellis fluid. Expressions for velocity profile, shear stress on the pipe, volume flux, average velocity, and the relationship between the time vary with the depth of a tank and the time required for complete drainage are obtained. Impacts of different developing parameters on velocity profile vz and depth H(t) are illustrated graphically. The analogy of the Ellis, power law, Newtonian, and Bingham Plastic fluids for the relation of depth with respect to time, unfold that the tank can be empty faster for Ellis fluid as compared to its special cases.
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- 2018
19. An 8T SRAM with BTI-Aware Stability Monitor and two-phase write operation for cell stability improvement in 28-nm FDSOI.
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Zhao Chuan Lee, M. Sultan M. Siddiqui, Zhi-Hui Kong, and Tony Tae-Hyoung Kim
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- 2016
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20. Discrete SARS-CoV-2 antibody titers track with functional humoral stability
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Yannic C. Bartsch, Stephanie Fischinger, Sameed M. Siddiqui, Zhilin Chen, Jingyou Yu, Makda Gebre, Caroline Atyeo, Matthew J. Gorman, Alex Lee Zhu, Jaewon Kang, John S. Burke, Matthew Slein, Matthew J. Gluck, Samuel Beger, Yiyuan Hu, Justin Rhee, Eric Petersen, Benjamin Mormann, Michael de St Aubin, Mohammad A. Hasdianda, Guruprasad Jambaulikar, Edward W. Boyer, Pardis C. Sabeti, Dan H. Barouch, Boris D. Julg, Elon R. Musk, Anil S. Menon, Douglas A. Lauffenburger, Eric J. Nilles, and Galit Alter
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- 2021
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21. Role of Nursing Informatics in Implementation of SNOMED-CT in India.
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Sweety Rai, Owais M. Siddiqui, Susil K. Meher, A. Shariff, and Shefali Banga
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- 2019
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22. Open-Spaced Ridged Hydrogel Scaffolds Containing TiO2-Self-Assembled Monolayer of Phosphonates Promote Regeneration and Recovery Following Spinal Cord Injury
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Madigan, Ahad M. Siddiqui, Frederic Thiele, Rachel N. Stewart, Simone Rangnick, Georgina J. Weiss, Bingkun K. Chen, Jodi L. Silvernail, Tammy Strickland, Jarred J. Nesbitt, Kelly Lim, Jean E. Schwarzbauer, Jeffrey Schwartz, Michael J. Yaszemski, Anthony J. Windebank, and Nicolas N.
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axon regeneration ,biomaterials ,immune cells ,machine learning ,mesenchymal stromal cells (MSCs) ,oligo(poly(ethylene glycol)) fumarate ,Schwann cells ,spinal cord injury ,titanium dioxide ,scarring - Abstract
The spinal cord has a poor ability to regenerate after an injury, which may be due to cell loss, cyst formation, inflammation, and scarring. A promising approach to treating a spinal cord injury (SCI) is the use of biomaterials. We have developed a novel hydrogel scaffold fabricated from oligo(poly(ethylene glycol) fumarate) (OPF) as a 0.08 mm thick sheet containing polymer ridges and a cell-attractive surface on the other side. When the cells are cultured on OPF via chemical patterning, the cells attach, align, and deposit ECM along the direction of the pattern. Animals implanted with the rolled scaffold sheets had greater hindlimb recovery compared to that of the multichannel scaffold control, which is likely due to the greater number of axons growing across it. The immune cell number (microglia or hemopoietic cells: 50–120 cells/mm2 in all conditions), scarring (5–10% in all conditions), and ECM deposits (Laminin or Fibronectin: approximately 10–20% in all conditions) were equal in all conditions. Overall, the results suggest that the scaffold sheets promote axon outgrowth that can be guided across the scaffold, thereby promoting hindlimb recovery. This study provides a hydrogel scaffold construct that can be used in vitro for cell characterization or in vivo for future neuroprosthetics, devices, or cell and ECM delivery.
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- 2023
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23. Two Phase Write Scheme to Improve Low Voltage Write-ability in Medium-Density SRAMs.
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M. Sultan M. Siddiqui, Shailendra Sharad, Yogendra Sharma, and Amit Khanuja
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- 2015
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24. Mechanical Property Evaluation of CuNb Composites Manufactured with High-Pressure Torsion
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D. Frazer, R. C. Connick, C. Howard, M. Siddiqui, R. Fritz, P. Kutlesa, and P. Hosemann
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General Engineering ,General Materials Science - Published
- 2022
25. Intra-tracheal extension of hilar mass mimicking severe asthma: Anesthesiologist perspective
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Khalid M Siddiqui, Muhammad F Khan, Muhammad A Asghar, and Syed S Uddin
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Anesthesiology ,RD78.3-87.3 - Published
- 2018
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26. Motivation for using data-driven algorithms in research: A review of machine learning solutions for image analysis of micrographs in neuroscience
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Frederic Thiele, Anthony J Windebank, and Ahad M Siddiqui
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Cellular and Molecular Neuroscience ,Neurology ,Neurology (clinical) ,General Medicine ,Pathology and Forensic Medicine - Abstract
Machine learning is a powerful tool that is increasingly being used in many research areas, including neuroscience. The recent development of new algorithms and network architectures, especially in the field of deep learning, has made machine learning models more reliable and accurate and useful for the biomedical research sector. By minimizing the effort necessary to extract valuable features from datasets, they can be used to find trends in data automatically and make predictions about future data, thereby improving the reproducibility and efficiency of research. One application is the automatic evaluation of micrograph images, which is of great value in neuroscience research. While the development of novel models has enabled numerous new research applications, the barrier to use these new algorithms has also decreased by the integration of deep learning models into known applications such as microscopy image viewers. For researchers unfamiliar with machine learning algorithms, the steep learning curve can hinder the successful implementation of these methods into their workflows. This review explores the use of machine learning in neuroscience, including its potential applications and limitations, and provides some guidance on how to select a fitting framework to use in real-life research projects.
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- 2023
27. Novel paradigm enables accurate monthly gestational screening to prevent congenital toxoplasmosis and more
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Y Zhou, K Leahy, A Grose, J Lykins, M Siddiqui, N. Leong, P Goodall, S Withers, K Ashi, S Schrantz, V Tesic, A P Abeleda, K Beavis, F Clouser, M Ismail, M Christmas, R Piarroux, D Limonne, E Chapey, S Abraham, I Baird, J Thibodeau, K Boyer, E Torres, S Conrey, K Wang, MA Staat, N Back, J Gomez Marin, F Peyron, S Houze, M Wallon, and R McLeod
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Article - Abstract
BackgroundCongenital toxoplasmosis is a treatable, preventable disease, but untreated causes death, prematurity, loss of sight, cognition and motor function, and substantial costs worldwide.Methods/FindingsIn our ongoing USA feasibility/efficacy clinical trial, data collated with other ongoing and earlier published results proved high performance of an Immunochromatographic-test(ICT) that enables accurate, rapid diagnosis/treatment, establishing new paradigms for care. Overall results from patient blood and/or serum samples tested with ICT compared with gold-standard-predicate-test results found ICT performance for 4606 sera/1876 blood, 99.3%/97.5% sensitive and 98.9%/99.7% specific. However, in the clinical trial the FDA-cleared-predicate test initially caused practical, costly problems due to false-positive-IgM results. For 58 persons, 3/43 seronegative and 2/15 chronically infected persons had false positive IgM predicate tests. This caused substantial anxiety, concerns, and required costly, delayed confirmation in reference centers. Absence of false positive ICT results contributes to solutions: Lyon and Paris France and USA Reference laboratories frequently receive sera with erroneously positive local laboratory IgM results impeding patient care. Therefore, thirty-two such sera referred to Lyon’s Reference laboratory were ICT-tested. We collated these with other earlier/ongoing results: 132 of 137 USA or French persons had false positive local laboratory IgM results identified correctly as negative by ICT. Five false positive ICT results in Tunisia and Marseille, France, emphasize need to confirm positive ICT results with Sabin-Feldman-Dye-test or western blot. Separate studies demonstrated high performance in detecting acute infections, meeting FDA, CLIA, WHO ASSURED, CEMark criteria and patient and physician satisfaction with monthly-gestational-ICT-screening.Conclusions/SignificanceThis novel paradigm using ICT identifies likely false positives or raises suspicion that a result is truly positive, rapidly needing prompt follow up and treatment. Thus, ICT enables well-accepted gestational screening programs that facilitate rapid treatment saving lives, sight, cognition and motor function. This reduces anxiety, delays, work, and cost at point-of-care and clinical laboratories.Author’s SummaryToxoplasmosis is a major health burden for developed and developing countries, causing damage to eyes and brain, loss of life and substantial societal costs. Prompt diagnosis in gestational screening programs enables treatment, thereby relieving suffering, and leading to > 14-fold cost savings for care. Herein, we demonstrate that using an ICT that meets WHO ASSURED-criteria identifying persons with/without antibody toToxoplasma gondiiin sera and whole blood with high sensitivity and specificity, is feasible to use in USA clinical practice. We find this new approach can help to obviate the problem of detection of false positive anti-T.gondiiIgM results for those without IgG antibodies toT.gondiiwhen this occurs in present, standard of care, predicate USA FDA cleared available assays. Thus, this accurate test facilitates gestational screening programs and a global initiative to diagnose and thereby prevent and treatT.gondiiinfection. This minimizes likelihood of false positives (IgG and/or IgM) while maintaining maximum sensitivity. When isolated IgM antibodies are detected, it is necessary to confirm and when indicated continue follow up testing in ∼2 weeks to establish seroconversion. Presence of a positive ICT makes it likely that IgM is truly positive and a negative ICT makes it likely that IgM will be a false positive without infection. These results create a new, enthusiastically-accepted, precise paradigm for rapid diagnosis and validation of results with a second-line test. This helps eliminate alarm and anxiety about false-positive results, while expediting needed treatment for true positive results and providing back up distinguishing false positive tests.
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- 2023
28. The case for collecting, analysing, and utilizing sex-disaggregated data and gendered data to inform outbreak responses, a systematic review of the literature 2012-2022
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Emelie Phillips, McKenzie Gales, Shirin Heidari, Leah Pao, Marie-Amélie Degail, Christine Dubrey, Clara Ribas, Marie Meudec, M. Siddiqui, and Simone Carter
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Health (social science) ,Epidemiology ,Health Policy ,Public Health, Environmental and Occupational Health ,Medicine (miscellaneous) ,Health Informatics - Published
- 2023
29. Health and economic effects of introducing single-dose human papillomavirus vaccination in India
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TM de Carvalho, I Man, D Georges, LR Saraswati, P Bhandari, I Kataria, M Siddiqui, R Muwonge, E Lucas, R Sankaranarayanan, P Basu, J Berkhof, JA Bogaards, and I Baussano
- Abstract
BackgroundCervical cancer is a major public health problem in India, where access to prevention programmes is low. The World Health Organization-Strategic Advisory Group of Experts recently updated their recommendation for human papillomavirus (HPV) vaccination to include a single-dose option in addition to the two-dose option, which could make HPV vaccination programmes easier to implement and more affordable.MethodsWe combined projections from a type-specific HPV transmission model and a cancer progression model to assess the health and economic effects of HPV vaccination at national and state-level in India. The models used national and state-specific Indian demographic, epidemiological and cost data, and single-dose vaccine efficacy and immunogenicity data from the IARC India vaccine trial with 10-year follow-up. We compared single- and two-dose HPV vaccination for a range of plausible scenarios regarding single-dose vaccine protection, coverage and catch-up.ResultsUnder the base-case scenario of life-long protection of single-dose vaccination in 10-year-old girls with 90% coverage, the incremental cost-effectiveness ratio (ICER) of nationwide vaccination relative to no vaccination was $405 per DALY averted and lay below an opportunity-cost based threshold of 30% Indian GDP per capita in each state (state-specific ICER range: $67 to $593 per DALY averted). The ICER of two-dose vaccination versus no vaccination and versus single-dose vaccination was $1403 and minimum $2279 per DALY averted, respectively.ConclusionsNationwide introduction of single-dose HPV vaccination in India is highly likely to be cost-effective whereas extending the number of doses from one to two would have a less favourable profile.FundingBill & Melinda Gates Foundation.What is already known in this topicIn 2020, the World Health Organization (WHO) launched a global call for elimination of cervical cancer as a public health problem, of which HPV vaccination is a key pillar. However, access to HPV vaccination in India is still very low.In April 2022, the WHO Strategic Advisory Group of Experts (SAGE) issued a recommendation for countries to update their dosing schedules to include a single-dose option. Single-dose HPV vaccination is likely to be more affordable and would greatly facilitate the implementation of HPV vaccination.The key questions for India are whether, with a realistic cost-effectiveness threshold (30% GDP per capita), single-dose HPV vaccination would be a cost-effective intervention; and whether two-dose vaccination could still be affordable and worthwhile compared to a single-dose schedule, given the uncertainty in its initial efficacy and long-term protection.What this study addsWe used state-specific cancer incidence and locally collected cost data and built plausible vaccination efficacy scenarios based on the IARC India trial to inform the cost-effectiveness estimates.Single-dose vaccination in India would be cost-effective under a cost-effectiveness threshold of 30% of the Indian GDP per capita and the annual budget impact would be less than 10% of the cost of the current Indian universal childhood vaccination programme.Even though there was substantial heterogeneity, we confirmed that single-dose vaccination would be cost-effective across all Indian states.Catch-up single-dose vaccination to age 15 or 20 is a cost-effective strategy. However, the decision to implement catch-up will depend on the willingness of the health authorities to support a higher initial investment. We found two-dose vaccination to have a less favourable cost-effectiveness profile.How this study might affect research practice and policySingle-dose vaccination achieved a better balance between health benefits and financial burden than two-dose vaccination, even after taking into account uncertainty in the level of protection provided by single-dose HPV vaccination.Our results could be used by Indian health authorities at the national and state-level to inform their decision and planning of the implementation of HPV vaccination in India and could convey several lessons for other low and middle income countries.
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- 2023
30. Data from Exploiting MCL1 Dependency with Combination MEK + MCL1 Inhibitors Leads to Induction of Apoptosis and Tumor Regression in KRAS-Mutant Non–Small Cell Lung Cancer
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Aaron N. Hata, Paul E. Hughes, Cyril H. Benes, Angela Coxon, Sean P. Brown, Kristopher A. Sarosiek, Justin F. Gainor, Christopher G. Azzoli, Anna F. Farago, Zofia Piotrowska, Lecia V. Sequist, Colleen Keyes, John H. Shin, Daniel P. Cahill, Kevin A. Raskin, Cameron D. Wright, Michael Lanuti, Lorin A. Ferris, Kristof Vajda, Diamanda Rigas, Cameron Fraser, Chendi Li, Hannah L. Archibald, Maria Gomez-Caraballo, Nicole Phan, Samantha J. Bilton, Daria Timonina, Sean Caenepeel, Faria M. Siddiqui, and Varuna Nangia
- Abstract
BH3 mimetic drugs, which inhibit prosurvival BCL2 family proteins, have limited single-agent activity in solid tumor models. The potential of BH3 mimetics for these cancers may depend on their ability to potentiate the apoptotic response to chemotherapy and targeted therapies. Using a novel class of potent and selective MCL1 inhibitors, we demonstrate that concurrent MEK + MCL1 inhibition induces apoptosis and tumor regression in KRAS-mutant non–small cell lung cancer (NSCLC) models, which respond poorly to MEK inhibition alone. Susceptibility to BH3 mimetics that target either MCL1 or BCL-xL was determined by the differential binding of proapoptotic BCL2 proteins to MCL1 or BCL-xL, respectively. The efficacy of dual MEK + MCL1 blockade was augmented by prior transient exposure to BCL-xL inhibitors, which promotes the binding of proapoptotic BCL2 proteins to MCL1. This suggests a novel strategy for integrating BH3 mimetics that target different BCL2 family proteins for KRAS-mutant NSCLC.Significance:Defining the molecular basis for MCL1 versus BCL-xL dependency will be essential for effective prioritization of BH3 mimetic combination therapies in the clinic. We discover a novel strategy for integrating BCL-xL and MCL1 inhibitors to drive and subsequently exploit apoptotic dependencies of KRAS-mutant NSCLCs treated with MEK inhibitors.See related commentary by Leber et al., p. 1511.This article is highlighted in the In This Issue feature, p. 1494
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- 2023
31. Supplementary Data from Exploiting MCL1 Dependency with Combination MEK + MCL1 Inhibitors Leads to Induction of Apoptosis and Tumor Regression in KRAS-Mutant Non–Small Cell Lung Cancer
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Aaron N. Hata, Paul E. Hughes, Cyril H. Benes, Angela Coxon, Sean P. Brown, Kristopher A. Sarosiek, Justin F. Gainor, Christopher G. Azzoli, Anna F. Farago, Zofia Piotrowska, Lecia V. Sequist, Colleen Keyes, John H. Shin, Daniel P. Cahill, Kevin A. Raskin, Cameron D. Wright, Michael Lanuti, Lorin A. Ferris, Kristof Vajda, Diamanda Rigas, Cameron Fraser, Chendi Li, Hannah L. Archibald, Maria Gomez-Caraballo, Nicole Phan, Samantha J. Bilton, Daria Timonina, Sean Caenepeel, Faria M. Siddiqui, and Varuna Nangia
- Abstract
Supplementary Figure 1-5, Supplementary Tables 1-3
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- 2023
32. Demographics and Characteristics of Acutely Decompensated Heart Failure (ADHF) Patients in a Tertiary Care Center in Saudi Arabia
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Hassan Alalawi, Hamza L Fida, Omar A Bokhary, Majed A Alhuzali, Abdullah F Alharbi, Faisal Y Alhodian, Mohammed R Alsahari, and Aisha M Siddiqui
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General Engineering - Published
- 2023
33. A Radiation Hardened SRAM with Self-refresh and Compact Error Correction.
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M. Sultan M. Siddiqui, Ruchi Sharma, Van Loi Le, Taegeun Yoo, Ik-Joon Chang, and Tony Tae-Hyoung Kim
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- 2018
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34. Perception and understanding of dental practitioners in provision of dental treatment to pregnant women in Karachi, Pakistan
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Aisha Wali, Talha M Siddiqui, Anum Sarwar, Anum Anjum, and Hina Rao
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Dentists' perception ,oral health ,pregnant women ,Dentistry ,RK1-715 - Abstract
Aim: The aim of the study was to that assess the perceptions and understanding of dental practitioners in the provision of dental treatment to pregnant women. Materials and Methods: The study was a quantitative, cross-sectional type. A sample size of 200 dental practitioners were included in the study between the period of 6 months, i.e. June–December. A cluster sampling technique was employed covering four different dental institutes. A structured questionnaire was designed to assess the perception and understanding of dental practitioners in providing treatment to the pregnant women. Statistical Analysis: Statistical analysis was performed using SPSS version 19. Chi-square test was done to analyze the association of perception of dental practitioners in treating pregnant women in relation to gender. Results: A total of 200 dental practitioners filled the questionnaire out of which 43% (86) were males and 57% (114) were females. Eighty-two percent of the total participants said that it is safe to provide dental treatment during pregnancy, almost 90.4% of the total dentist interviewed was aware of the special position in which to place a pregnant woman on a dental chair. 85.5% of the study population do not prefer taking radiographs of a pregnant woman, 63% of the entire dentist surveyed prefers to use local anesthesia before any dental procedure on a pregnant patient. 96.5% care to educate their pregnant patient about improving dental health care. 59.5% of the dental practitioners said that they would consult the patient's gynecologist as a mandatory requirement before treating the patient. 57% of the dental practitioners answered with gingivitis. 70.5% agreed on scaling. The majority of the dentists prescribed paracetamol 85.5%. Conclusion: Little is known about the perception and utilization of dental practitioners in providing dental treatment to pregnant women in Pakistan. The present survey concluded that dental practitioners lack appropriate knowledge of X-rays and its effects, prescribing appropriate medications, consultation with patients' gynecologist as a mandatory requirement before provision of dental treatment and educating pregnant woman to seek dental care. There is a need to arrange continuous dental education programs for dental practitioners to gain updated knowledge when providing dental treatment to pregnant women.
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- 2016
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35. Flow of a Second Grade Fluid through Constricted Tube using Integral Method
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A A. M. Siddiqui, N. Z. Khan, Muhammad Afzal Rana, and Tahira Haroon
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Non-Newtonian fluids ,Constricted tube ,Analytical solutions ,Shear stress ,Back flow ,Separation and reattachment points. ,Mechanical engineering and machinery ,TJ1-1570 - Abstract
The steady flow of a second grade fluid through constricted tube for mild stenosis is modeled and analyzed theoretically. The governing equations are simplified by implying an order-of-magnitude analysis. Based on Karman Pohlhausen procedure polynomial solution for velocity profile is presented. Expressions for pressure gradient, shear stress, separation and reattachment points are also calculated. The effects of nondimensional parameters emerging in the model on the velocity profile, shear stress, pressure gradient are discussed and depicted graphically. The effect of non-Newtonian parameter on velocity profile, wall shear stress and pressure gradient is also analyzed. It is found that the Reynolds number strongly effect the wall shear stress, separation and reattachment points.
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- 2016
36. [Et 3 NH][HSO 4 ] catalyzed solvent‐free synthesis of new 1,2,3‐triazolidene‐indolinone derivatives
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Madiha M. Siddiqui, Amol A. Nagargoje, Akram K. Raza, Parshuram M. Pisal, and Bapurao B. Shingate
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Organic Chemistry - Published
- 2022
37. [HDBU][HSO4]-catalyzed facile synthesis of new 1,2,3-triazole-tethered 2,3-dihydroquinazolin-4[1H]-one derivatives and their DPPH radical scavenging activity
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Madiha M. Siddiqui, Amol A. Nagargoje, Satish V. Akolkar, Jaiprakash N. Sangshetti, Vijay M. Khedkar, Parshuram M. Pisal, and Bapurao B. Shingate
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General Chemistry - Published
- 2022
38. Commissioning, clinical implementation, and initial experience with a new brain tumor treatment package on a low‐field MR‐linac
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Karen Chin Snyder, Weihua Mao, Joshua P. Kim, Justine Cunningham, Indrin J. Chetty, Salim M. Siddiqui, Parag Parikh, and Jennifer Dolan
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Radiation ,Radiology, Nuclear Medicine and imaging ,Instrumentation - Published
- 2023
39. Abstract WMP95: External Validation Of Acute Atherosclerotic Ischemic Stroke Radiological Markers
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Vincent A Barnes, Alayna N Henry, Kiddy L Ume, Gary Rajah, Sudeepta Dandapat, Santiago Ortega-Gutierrez, and Fazeel M Siddiqui
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Advanced and Specialized Nursing ,Neurology (clinical) ,Cardiology and Cardiovascular Medicine - Abstract
Introduction: Intracranial atherosclerosis-related acute large vessel occlusion (ICAS-LVO) is the dominant cause of acute middle cerebral artery (MCA) occlusions that can be passed with wire or microcatheter but cannot be completely opened (5-15% of all middle cerebral artery (MCA) infarcts). The major challenge of ICAS-LVO is the tendency of reocclusion or cause a residual, fixed severe stenosis rendering the vessel with suboptimal revascularization. These patients carry a poor functional outcome and high mortality despite mechanical thrombectomy (MT). We aimed to externally validate three preidentified markers of ICAS-LVO on early non-contrast computed tomography (NCCT) and CT Angiogram (absent hyperdense MCA sign (HMCAS), Hounsfield measurements (HU ratio≤1.1 and Delta HU Methods: We conducted a retrospective analysis of 77 consecutive patients presenting with acute M1 occlusions undergoing MT. Based on our previous observational experiences, NCCT and CTA patterns that had been associated with ICAS-LVO included the absent HMCAS, HU ratio and Delta HU between site of occlusion and contralateral MCA and CTA truncal occlusion. ICAS-LVO was identified if an occlusion was difficult to cross, had tendency to reocclude after successful recanalization or demonstrated residual fixed severe stenosis. These markers were also compared with reperfusion rates and functional outcomes at 3 months. Results: Out of 77 patients, 13 (16%) had suspected ICAS-LVO. Absent HMCAS had a sensitivity of 91% and specificity of 90% (AUC 0.91), HU ratio ≤1.1 and delta HU 2) at 3 months. Conclusion: Initial non-contrast CT and CTA markers are highly sensitive and specific in predicting atherosclerotic M1 occlusions and significantly associated with failed reperfusion, and poor functional outcomes after mechanical thrombectomy.
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- 2023
40. Author Correction: Ultrafast X-ray imaging of the light-induced phase transition in VO2
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Allan S. Johnson, Daniel Perez-Salinas, Khalid M. Siddiqui, Sungwon Kim, Sungwook Choi, Klara Volckaert, Paulina E. Majchrzak, Søren Ulstrup, Naman Agarwal, Kent Hallman, Richard F. Haglund, Christian M. Günther, Bastian Pfau, Stefan Eisebitt, Dirk Backes, Francesco Maccherozzi, Ann Fitzpatrick, Sarnjeet S. Dhesi, Pierluigi Gargiani, Manuel Valvidares, Nongnuch Artrith, Frank de Groot, Hyeongi Choi, Dogeun Jang, Abhishek Katoch, Soonnam Kwon, Sang Han Park, Hyunjung Kim, and Simon E. Wall
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General Physics and Astronomy - Published
- 2023
41. Clinical Utility of the Transthoracic Echocardiogram for Isolated Lacunar Infarcts
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Jeffrey Z. Nie, Matthew W. Weber, Kiddy Ume, Joseph Bernard, Stephanie A. Menezes, Vismay Thakkar, and Fazeel M. Siddiqui
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Stroke ,Heart Diseases ,Risk Factors ,Stroke, Lacunar ,Humans ,Ischemic Stroke ,Retrospective Studies - Abstract
Stroke is a prominent and financially burdensome disease. Lacunar strokes are traditionally attributed to small vessel disease rather than cardioemboli, which typically occlude larger arteries. Thus, the benefit of screening for potential sources of cardioemboli in lacunar stroke patients is unclear. We evaluated the clinical utility of the transthoracic echocardiogram performed in patients with lacunar strokes.A single-center retrospective analysis of ischemic stroke patients from January 2013 through December 2017 was performed. Brain magnetic resonance imaging was used to select patients with a single lacunar infarct. Patients presenting with acute symptoms of cardiac disease or an abnormal electrocardiogram were excluded. Transthoracic echocardiogram results were reviewed, and their utility in decision-making was evaluated.Of the 442 patients at our institution diagnosed with ischemic stroke during the inclusion period, 89 met inclusion criteria. Transthoracic echocardiogram detected a patent foramen ovale in 5.6% of patients, mitral annular calcification in 9.0% of patients, and abnormal wall motion in 4.5% of patients. For all patients, there were no findings that prompted anticoagulation, antibiotic, or surgical intervention. The cost of an inpatient transthoracic echocardiogram is $4100, resulting in $364,900 in unnecessary health care spending.Transthoracic echocardiogram appears to have minimal therapeutic value in most patients with lacunar strokes. In stroke patients with no acute symptoms of cardiac disease and a normal electrocardiogram, it may be reasonable to forgo the transthoracic echocardiogram if the brain magnetic resonance imaging shows an isolated lacunar infarct.
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- 2021
42. Ultrafast X-ray imaging of the light-induced phase transition in VO2
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Allan S. Johnson, Daniel Perez-Salinas, Khalid M. Siddiqui, Sungwon Kim, Sungwook Choi, Klara Volckaert, Paulina E. Majchrzak, Søren Ulstrup, Naman Agarwal, Kent Hallman, Richard F. Haglund, Christian M. Günther, Bastian Pfau, Stefan Eisebitt, Dirk Backes, Francesco Maccherozzi, Ann Fitzpatrick, Sarnjeet S. Dhesi, Pierluigi Gargiani, Manuel Valvidares, Nongnuch Artrith, Frank de Groot, Hyeongi Choi, Dogeun Jang, Abhishek Katoch, Soonnam Kwon, Sang Han Park, Hyunjung Kim, and Simon E. Wall
- Subjects
phase transitions and critical phenomena ,Condensed Matter - Strongly Correlated Electrons ,Condensed Matter - Materials Science ,Strongly Correlated Electrons (cond-mat.str-el) ,Condensed Matter - Mesoscale and Nanoscale Physics ,electronic devices ,Mesoscale and Nanoscale Physics (cond-mat.mes-hall) ,X-rays ,General Physics and Astronomy ,Materials Science (cond-mat.mtrl-sci) ,FOS: Physical sciences ,electronic properties and materials ,530 Physik - Abstract
Using light to control transient phases in quantum materials is an emerging route to engineer new properties and functionality, with both thermal and non-thermal phases observed out of equilibrium. Transient phases are expected to be heterogeneous, either through photo-generated domain growth or by generating topological defects, and this impacts the dynamics of the system. However, this nanoscale heterogeneity has not been directly observed. Here we use time- and spectrally resolved coherent X-ray imaging to track the prototypical light-induced insulator-to-metal phase transition in vanadium dioxide on the nanoscale with femtosecond time resolution. We show that the early-time dynamics are independent of the initial spatial heterogeneity and observe a 200 fs switch to the metallic phase. A heterogeneous response emerges only after hundreds of picoseconds. Through spectroscopic imaging, we reveal that the transient metallic phase is a highly orthorhombically strained rutile metallic phase, an interpretation that is in contrast to those based on spatially averaged probes. Our results demonstrate the critical importance of spatially and spectrally resolved measurements for understanding and interpreting the transient phases of quantum materials.
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- 2022
- Full Text
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43. A Multislice Approach to Quantify Laser-Induced Lattice Temperature from Ultrafast Electron Diffraction Measurements of Single-Crystal Films
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Daniel B Durham, Khalid M Siddiqui, Colin Ophus, Andrew M Minor, and Daniele Filippetto
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Instrumentation - Published
- 2022
44. A 16-kb 9T Ultralow-Voltage SRAM With Column-Based Split Cell-VSS, Data-Aware Write-Assist, and Enhanced Read Sensing Margin in 28-nm FDSOI
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M. Sultan M. Siddiqui, Tony Tae-Hyoung Kim, and Zhao Chuan Lee
- Subjects
business.industry ,Computer science ,Electrical engineering ,Port (circuit theory) ,Chip ,Hardware and Architecture ,Margin (machine learning) ,Virtual ground ,Static random-access memory ,Electrical and Electronic Engineering ,business ,Software ,Energy (signal processing) ,Leakage (electronics) ,Voltage - Abstract
This work proposes an static random access memory (SRAM) with column-based split cell-VSS (CS-CVSS), data-aware write-assist (DAWA), and enhanced read sensing margin in 28-nm FDSOI technology. The proposed CS-CVSS and DAWA techniques improve both half-selected (HS) static noise margin (SNM) and write margin. They also improve HS dynamic noise margin (HS-DNM) by leveraging write through virtual ground with reduced load in the proposed write port. The proposed 3T read port enhances sensing margin by minimizing read bitline leakage through negative gate-to-source voltage regardless of cell data. A 16-kb 9T SRAM test chip demonstrated the minimum operating voltage for write and read operations as 0.47 and 0.25 V, respectively. The minimum energy of 6.72 pJ is achieved at 0.5 V.
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- 2021
45. Antimicrobial activity of aqueous and organic extracts of a Saudi medicinal plant: Rumex nervosus
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Abdul Rahman K Al-Asmari, Yunus M Siddiqui, Md Tanwir Athar, Ahmed Al-Buraidi, A S Al-Eid, and Ghalib B Horaib
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Antimicrobial activity ,Rumex nervosus ,Saudi medicinal plant ,Pharmacy and materia medica ,RS1-441 ,Analytical chemistry ,QD71-142 - Abstract
Objective: The antimicrobial effect of aerial part of Rumex nervosus obtained from the Southern region of Saudi Arabia was evaluated on bacterial strains Staphylococcus aureus, methicillin resistant S. aureus, Enterococcus faecalis, Escherichia coli, Pseudomonas Aeruginosa, and fungal strain Candida albicans. Materials and Methods: The solvents used for the extraction were aqueous, hexane, and methanol. The in vitro antimicrobial activity was performed by agar diffusion and disk diffusion methods and the confirmation of this activity was done by the enumeration of colony forming units (CFU). Results: The aqueous extract showed the growth inhibitory effect on Gram-positive bacteria while the Gram-negative P. aeruginosa was the most sensitive microorganism as determined by the agar diffusion technique. Surprisingly, the extract showed little antibacterial activity on other Gram-negative bacteria (E. coli) by this technique. Ethanolic extract was also found to be inhibitory to the growth of microorganisms. Hexane extract was relatively low in antimicrobial activity on Gram-negative E. coli and P. aeruginosa, while both the organic extracts were inhibitory to the growth of the fungus, C. albicans. Hexane gave no conclusive results with agar or disk diffusion methods, but showed the microbial growth inhibition in CFU enumeration. The antibacterial activity of active extracts was compared with vancomycin while antifungal activity of was compared with amphotericin B. Conclusion: The results obtained in the present study suggest that R. nervosus showed a marked antimicrobial activity with the test organisms.
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- 2015
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46. Anatomical location of injected microglia in different activation states and time course of injury determines survival of retinal ganglion cells after optic nerve crush
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Ahad M. Siddiqui, Thomas F. Sabljic, and Alexander K. Ball
- Subjects
General Neuroscience ,General Medicine - Abstract
Background: Activated microglia release harmful substances to retinal ganglion cells (RGCs), but may also benefit by removing cellular debris and secreting neurotrophic factors. These paradoxical roles remain controversial because the nature and time-course of the injury that defines their role is unknown. The aim of this study was to determine if pharmacological manipulation of microglia to acquire a pro-inflammatory or pro-survival phenotype will exacerbate or enhance neuronal survival after injury.Material and methods: Treated HAP I (highly aggressively proliferating immortalized) microglia were injected into the vitreous or tail vein (T V) of female Sprague-Dawley rats. Retinas were examined at 4-14 days following optic nerve crush (ONC) and the number of surviving RGCs was determined.Results: Injection of untreated HAP I cells resulted in the greater loss of RGCs early after ONC when injected into the vitreous and later after ONC when injected into the T V. LP S activated HAP I cells injected into the vitreous resulted in greater RGC loss with and without injury. When injected into the T V with ONC there was no loss of RGCs 4 days after ONC but greater loss afterwards. Minocycline treated HAP I cells injected into the vitreous resulted in greater RGC survival than untreated HAP I cells. However, when injected into the T V with ONC there was greater loss of RGCs. These results suggest that optic nerve signals attract extrinsic microglia to the retina, resulting in a proinflammatory response.Conclusion: Neuroprotection or cytotoxicity of microglia depends on the type of activation, time course of the injury, and if they act on the axon or cell body. HAPI microglia migrate to the retina or optic nerve following optic nerve injury when injected into the vitreous or tail vein, respectively. Pretreatment with LPS or minocycline differentially effects retinal ganglion cell survival. In most cases, the result late in the injury process is greater retinal ganglion cell loss. We show here that neuroprotection is not solely determined by the microglial activation state but factors such as the environment and time-course of the injury. Culture microglia can be treated in vitro and then injected in vivo. The cells migrate to the site of injury, cell body of retinal ganglion cells if in the vitreous or to the optic nerve if injected in the tail vein. Retinal ganglion cell death is dependent on the location the microglia act, time-course of injury, and activation state. Proinflammatory microglia can be neuroprotective early in the injury when the primary site of action is on the axons whereas hypoactivated microglia are neuroprotective early in injury when they act on the soma. Later in the injury, both become detrimental.
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- 2022
47. Accurate quantification of lattice temperature dynamics from ultrafast electron diffraction of single-crystal films using dynamical scattering simulations
- Author
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Daniel B. Durham, Colin Ophus, Khalid M. Siddiqui, Andrew M. Minor, and Daniele Filippetto
- Subjects
Accelerator Physics (physics.acc-ph) ,Condensed Matter - Materials Science ,Radiation ,Condensed Matter - Mesoscale and Nanoscale Physics ,Mesoscale and Nanoscale Physics (cond-mat.mes-hall) ,Materials Science (cond-mat.mtrl-sci) ,FOS: Physical sciences ,Physics - Accelerator Physics ,Condensed Matter Physics ,Instrumentation ,Spectroscopy - Abstract
In ultrafast electron diffraction (UED) experiments, accurate retrieval of time-resolved structural parameters, such as atomic coordinates and thermal displacement parameters, requires an accurate scattering model. Unfortunately, kinematical models are often inaccurate even for relativistic electron probes, especially for dense, oriented single crystals where strong channeling and multiple scattering effects are present. This article introduces and demonstrates dynamical scattering models tailored for quantitative analysis of UED experiments performed on single-crystal films. As a case study, we examine ultrafast laser heating of single-crystal gold films. Comparison of kinematical and dynamical models reveals the strong effects of dynamical scattering within nm-scale films and their dependence on sample topography and probe kinetic energy. Applying to UED experiments on an 11 nm thick film using 750 keV electron probe pulses, the dynamical models provide a tenfold improvement over a comparable kinematical model in matching the measured UED patterns. Also, the retrieved lattice temperature rise is in very good agreement with predictions based on previously measured optical constants of gold, whereas fitting the Debye-Waller factor retrieves values that are more than three times lower. Altogether, these results show the importance of dynamical scattering theory for quantitative analysis of UED and demonstrate models that can be practically applied to single-crystal materials and heterostructures., 13 pages, 7 figures
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- 2022
48. Observation of Myocardial Involvement in Patients Recovered From COVID-19 by Using Cardiac Magnetic Resonance Imaging, In a Tertiary Care Hospital, Bangladesh
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N, Ghafoor, M M, Islam, S N, Shakil, K P, Deepa, A K, Dutta, K A, Medha, M, Siddiqui, N, Siraj, J A, Parven, and M S, Showkat
- Subjects
Adult ,Tertiary Care Centers ,Bangladesh ,Predictive Value of Tests ,COVID-19 ,Contrast Media ,Humans ,Magnetic Resonance Imaging, Cine ,Gadolinium ,Cardiomyopathies ,Magnetic Resonance Imaging - Abstract
It was previously reported that coronavirus caused myocardial injury in hospitalized patients. However, delayed cardiac involvement in symptomatic patient recovery from COVID-19 is not yet well known. The objective of this study was to evaluate cardiac involvement by using cardiac magnetic resonance (CMR) in symptomatic post-COVID-19 recovered patients. Thirty (30) patients who recovered from COVID-19 and had recently reported cardiac symptoms were studied in a prospective observational study performed at Popular Medical College Hospital, Dhaka, Bangladesh from March 2021 to September 2021. They underwent CMR examinations. CMR scanning protocol included the following: black blood, cine sequence, both short-axis and long-axis, T2-weight short tau inversion recovery (STIR) sequence, T2- weighted imaging (T2WI) and late gadolinium enhancement (LGE) and quantitative mapping sequences-native T1/T2 mapping and post-contrast T1 mapping. Myocardial edema and late gadolinium enhancement were assessed in all patients. Quantitative evaluation of native T1/T2 and ECV value and cardiac function were evaluated. There were 30 people in all in this study. The average age of the participants in the study was 36.6 years. Fourteen (46.6%) of the patients had abnormal cardiac MRI results, while the remaining 15(53.3%) had negative CMR findings. Among positive findings patients, 8(57.1%) of 14 had increased T2 signal. Increased myocardial edema was found in the same no of patients, involving 53.2% (128 of 224) of LV segments. Only 2 cases (2 of 14) showed mid myocardial and subepicardial LGE, involving 18 of 224, 8.03% of myocardial segments. Global native T1, T2 and ECV values are significantly elevated in all CMR positive findings patients. Native T1 1231ms (IQR: 1281.25-1257.5 versus 1155.5 (IQR: 1137.25-1172.75), T2 40 (IQR: 34.5-43.25) versus 35.5 (IQR: 34-37), ECV 31 (29.75-33.25) versus 23.5 (21.25-24.0), p0.001; p0.011 and p0.001 respectively. Reduced RV functional were found in positive as compared with negative CMR findings patients, EF, 32.05 (IQR: 25.25-39.0) versus 54.5 (IQR: 52.0-57.75) and EDV, 117.5 (IQR: 102.0-134.25) versus 95.0 (IQR: 71.75-99.75), p0.001 and p0.001 respectively. In this study cardiac involvement was found in the post-COVID-19 recovered patient with cardiac symptoms. Cardiac MRI findings included myocardial edema, fibrosis and reduced right ventricular function. So attention should be paid to symptomatic post-COVID-19 recovered patients.
- Published
- 2022
49. Factors influencing the use of postoperative bilevel positive airway pressure (BiPAP) in patients undergoing adult cardiac surgery: A retrospective cohort study
- Author
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Syed S. Ahmed, Muhammad S. Yousuf, Khalid Samad, Hameed Ullah, and Khalid M. Siddiqui
- Subjects
General Medicine - Abstract
Respiratory complications are one of the biggest challenges following cardiac surgery, which can lead to hypoxia and acute respiratory failure (ARF). The aim of this study to identify the factors led to BiPAP application for postoperative respiratory complications and its effectiveness as the main outcome measures after cardiac surgery.It was a retrospective cohort study with consecutive sampling technique. A total of 335 postcardiac surgery patients medical record was reviewed who were underwent for surgery from November 1, 2018 to November 30, 2019. 265 patients were finalized for the recruitment, five patients were excluded before the final analysis. Data of 260 patients were analyzed for compiling of results.The mean age was 59 years. 196 (75.4%) patients were males and females were 64 (24.6%). Mean weight was 72 kg and mean body mass index (BMI) 26.67 kg/mBiPAP is effective to treat ARF and other respiratory complications after adult cardiac surgeries. High BMI, atelectasis, and pneumonia are also the independent factors causing ARF. BiPAP can be a successful tool for preventing the adverse effects of postoperative pulmonary complications after cardiac surgery.
- Published
- 2022
50. Open spaced ridged hydrogel scaffolds containing TiSAMP surface chemistry promotes regeneration and recovery following spinal cord injury
- Author
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Ahad M. Siddiqui, Fredric Thiele, Rachel Stewart, Simone Rangnick, Georgina Weiss, Bingkun K. Chen, Jodi Silvernail, Tammy Strickland, Jarred Nesbitt, Kelly Lim, Jean E. Schwarzbauer, Jeffrey Schwartz, Michael J. Yaszemski, Anthony J. Windebank, and Nicolas N. Madigan
- Abstract
The spinal cord has poor ability to regenerate after injury, which may be due to cell loss, cyst formation, inflammation, and scarring. A promising approach to treat spinal cord injury (SCI) is the use of biomaterials. We have developed a novel hydrogel scaffold fabricated from oligo(poly(ethylene glycol) fumarate) (OPF) as a 0.08 mm thick sheet containing polymer ridges and a cell-attractive surface chemistry on the other side. When the cells are cultured on OPF with the chemical patterning, the cells attach, align, and deposit ECM along the direction of the pattern. Animals implanted with the rolled scaffold sheets had greater hindlimb recovery compared to the multichannel scaffold control, likely due to the greater number of axons growing across. Inflammation, scarring, and ECM deposits were equal across conditions. Overall, the results suggest that the scaffold sheets promote axon outgrowth that can be guided across the scaffold, thereby promoting hindlimb recovery.
- Published
- 2022
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