153 results on '"M. Gutknecht"'
Search Results
2. Seasonal Plant Nitrogen Use and Soil N pools in Intermediate Wheatgrass (Thinopyrum intermedium)
- Author
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Michelle Dobbratz, Jacob M. Jungers, and Jessica L. M. Gutknecht
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Kernza ,nitrogen use efficiency ,nitrogen mineralization ,plant tissue N ,N immobilization ,root nitrogen ,Agriculture (General) ,S1-972 - Abstract
Intermediate wheatgrass (Thinopyrum intermedium; IWG) is a perennial grass under development as a grain and forage crop. Although IWG is known for its ability to take up nitrate and improve water quality, seasonal nitrogen (N) demand and uptake by IWG is not well known. We measured IWG shoot, root, and grain production, tissue N concentration, and soil mineral N at multiple plant growth stages in 1- and 2-year-old IWG stands fertilized with various rates of N: (1) 80 kg N ha−1 applied at spring regrowth (spring), (2) 40–40 kg N ha−1 applied at spring regrowth and anthesis (split), and (3) an unfertilized control. We also calculated nitrogen use efficiency and biomass N yield. Soil mineral N, N-mineralization rates, and plant N concentration increased with fertilization, and lodging increased with spring fertilization, while root physiological N use efficiency (PNUE) declined with fertilization. Seasonally, shoot and root N concentration declined at physiological maturity, while shoot PNUE was highest at maturity, suggesting either that surplus N was allocated to grain or that more biomass was being produced per unit N taken up. In the 1-year-old stand, during fall regrowth, soil mineral N levels were among the lowest; however, the total soil N was highest compared with other sampling times, suggesting a large influx of organic N between physiological maturity and fall regrowth. Based on our results, IWG is well suited to use nitrogen inputs and avoid excess N leaching into groundwater, but it is also clear that IWG has strong seasonal N allocation patterns that should be taken into consideration with N recommendations and best practices.
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- 2023
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3. DNA Template Dilution Impacts Amplicon Sequencing-Based Estimates of Soil Fungal Diversity
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Sarah C. Castle, Zewei Song, Daryl M. Gohl, Jessica L. M. Gutknecht, Carl J. Rosen, Michael J. Sadowsky, Deborah A. Samac, and Linda L. Kinkel
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Plant culture ,SB1-1110 ,Microbial ecology ,QR100-130 ,Plant ecology ,QK900-989 - Abstract
Next generation sequencing of taxonomically relevant marker genes has enabled researchers to sample the richness, diversity, and composition of environmental microbiomes at previously unattainable depths. However, molecular methods may have unintended downstream consequences and the inadvertent undersampling of microbial communities may be a significant pitfall in microbiome profiling. One such procedure, dilution of the DNA template prior to polymerase chain reaction (PCR), may improve marker gene amplification by reducing chimeric read formation and decreasing PCR inhibitor concentrations. However, dilution unavoidably reduces target DNA template number per sample. We evaluated the effects of pre-PCR DNA template dilution on estimates of soil fungal microbiome diversity, composition, and species abundance distributions across a collection of 144 agricultural soil samples. Fungal DNA templates were serially diluted at 0-, 10-, 100-, and 1,000-fold and sequence data of diluted templates were compared with those of an identical set of undiluted templates. For three prairie soil samples, in addition to evaluating variation among replicates of individual samples, we serially diluted fungal DNA extracts from soil samples in triplicate and sequenced undiluted and diluted samples. DNA template dilution significantly reduced estimates of fungal richness and diversity, as compared with undiluted samples. Dilution of DNA template also resulted in reduced relative abundances of rare operational taxonomic units (OTUs) and increased relative abundances of common OTUs. Collectively, changes in OTU abundance distributions following dilution produced substantial shifts in overall fungal community composition. Our results highlight risks associated with sample dilution and point to the potential utility of quantifying pre-PCR template concentration in the estimation of microbiomes. We urge researchers to thoroughly document methods and to reconsider routine dilution of pre-PCR DNA templates particularly for low abundance microbiome samples. As efforts to profile environmental microbiomes using molecular sequencing approaches accelerate, developing an adequate understanding of potential methodological bottlenecks will increase our ability to accurately characterize and compare datasets.
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- 2018
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4. Developments in Agricultural Soil Quality and Health: Reflections by the Research Committee on Soil Organic Matter Management
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Michelle M. Wander, Larry J. Cihacek, Mark Coyne, Rhae A. Drijber, Julie M. Grossman, Jessica L. M. Gutknecht, William R. Horwath, Sindhu Jagadamma, Daniel C. Olk, Matt Ruark, Sieglinde S. Snapp, Lisa K. Tiemann, Ray Weil, and Ronald F. Turco
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soil quality ,soil health ,soil services ,indicators ,frameworks ,public-private partnerships (PPP) ,Environmental sciences ,GE1-350 - Abstract
The North Central Education and Research Activity Committee (NCERA-59) was formed in 1952 to address how soil organic matter formation and management practices affect soil structure and productivity. It is in this capacity that we comment on the science supporting soil quality and associated soil health assessment for agricultural lands with the goal of hastening progress in this important field. Even though the suite of soil quality indicators being applied by U.S. soil health efforts closely mirrors the “minimum data set” we developed and recommended in the mid-1990s, we question whether the methods or means for their selection and development are sufficient to meet current and emerging soil health challenges. The rush to enshrine a standard suite of dated measures may be incompatible with longer-term goals. Legitimate study of soil health considers soil change accrued over years to decades that influence on- and off-site function. Tailoring of methods to local conditions is needed to effectively apply and interpret indicators for different soil resource regions and land uses. Adherence to a set suite of methods selected by subjective criteria should be avoided, particularly when we do not yet have adequate data or agreed upon interpretive frameworks for many so-called “Tier 1” biological indicators used in soil health assessment. While pooling data collected by producer-groups is one of the most exciting new trends in soil health, standardizing methods to meet broad inventory goals could compromise indicator use for site or application-specific problem solving. Changes in our nation's research landscape are shifting responsibility for soil stewardship from national and state government backed entities to public-private partnerships. As a result, it is critical to ensure that the data needed to assess soil health are generated by reproducible methods selected through a transparent process, and that data are readily available for public and private sector use. Appropriate methods for engagement need to be applied by public-private research partnerships as they establish and expand coordinated research enterprises that can deliver fact-based interpretation of soil quality indicators within the type of normative soil health framework conceived by USDA over 20 years ago. We look to existing examples as we consider how to put soil health information into the hands of practitioners in a manner that protects soils' services.
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- 2019
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5. Whole-Ecosystem Climate Manipulation Effects on Total Mercury within a Boreal Peatland
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Caroline Pierce, Sona Psarska, Brandy D. Stewart, Keith C. Oleheiser, Natalie A. Griffiths, Jessica L. M. Gutknecht, Randall K. Kolka, Stephen D. Sebestyen, Edward A. Nater, and Brandy M. Toner
- Abstract
Mercury is a ubiquitous pollutant that accumulates in peatlands, an ecosystem highly sensitive to climate change. We examined the effects of increasing temperature and elevated atmospheric carbon dioxide (CO2) on the concentration of total mercury (THg) in peatland soil and porewater. This research was performed at the Spruce and Peatland Responses Under Changing Environments (SPRUCE) experiment, an ecosystem-scale manipulation in an ombrotrophic bog in northern Minnesota, USA, which includes five temperature levels (above- and below-ground warming), with ambient or enhanced CO2 concentration. The effect of temperature on THgporewater concentration was dependent on depth but overall, increasing temperature led to increased THgporewater concentrations. The ratio of THgpeat to THgporewater decreased, indicating that THg moved from the peat into porewater under warmer conditions. Increased temperature resulted in decreased water table height, and as the water table dropped, increased THgporewater concentrations were observed, as well as decreased THgpeat concentration. The effect of elevated CO2 on THg concentrations in peat and porewater was less clear but in the top portion of the depth profile (0 cm to -40 cm), a negative correlation between elevated CO2 and THgpeat and a positive correlation between elevated CO2 and THgporewater concentration was observed. Our findings indicate with projected climate change, we may see enhanced concentrations of mercury in peatland porewaters that are available for export to surface waters, with potential implications for bioaccumulation in downstream aquatic communities.
- Published
- 2022
6. To meet grand challenges, agricultural scientists must engage in the politics of constructive collective action
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Nicholas R. Jordan, Timothy J. Krupnik, P. V. V. Prasad, Jessica L. M. Gutknecht, Mitchell C. Hunter, Sieglinde S. Snapp, K. A. Bybee-Finley, and Cameron M. Pittelkow
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0106 biological sciences ,media_common.quotation_subject ,Environmental ethics ,04 agricultural and veterinary sciences ,Biology ,Opinion and Policy Papers ,Collective action ,Deliberation ,01 natural sciences ,Constructive ,Economic Justice ,Politics ,Action (philosophy) ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Policy advocacy ,Opinion and Policy Paper ,Agronomy and Crop Science ,010606 plant biology & botany ,media_common ,Grand Challenges - Abstract
Agriculture now faces grand challenges, with crucial implications for the global future. These include the need to increase production of nutrient‐dense food, to improve agriculture's effects on soil, water, wildlife, and climate, and to enhance equity and justice in food and agricultural systems. We argue that certain politics of constructive collective action—and integral involvement of agricultural scientists in these politics—are essential for meeting grand challenges and other complex problems facing agriculture in the 21st century. To spur reflection and deliberation about the role of politics in the work of agricultural scientists, we outline these politics of constructive collective action. These serve to organize forceful responses to grand challenges through coordinated and cooperative action taken by multiple sectors of society. In essence, these politics entail (1) building bonds of affinity within a heterogenous network, (2) developing a shared roadmap for collective action, and (3) taking sustained action together. These emerging politics differ markedly from more commonly discussed forms of political activity by scientists, e.g., policy advisory, policy advocacy, and protest. We present key premises for our thesis, and then describe and discuss a politics of constructive collective action, the necessary roles of agricultural scientists, and an agenda for exploring and expanding their engagement in these politics.
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- 2020
7. Angelo Evaluation: application of a multisensor system for psycho-physiological stress detection in working environments.
- Author
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MikeC Andersson, A. Avamini, A. Colosimo, Arnaldo D'Amico, Fabrizio Davide, Corrado Di Natale, S. Ganci, M. Gutknecht, Martin Holmberg, E. Mazzone, M. Nardi, Andrea Pede, Martina Russo, V. Spicacci Minervini, and Arianna Tibuzzi
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- 2001
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8. Key Edaphic Properties Largely Explain Temporal and Geographic Variation in Soil Microbial Communities across Four Biomes.
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Kathryn M Docherty, Hannah M Borton, Noelle Espinosa, Martha Gebhardt, Juliana Gil-Loaiza, Jessica L M Gutknecht, Patrick W Maes, Brendon M Mott, John Jacob Parnell, Gayle Purdy, Pedro A P Rodrigues, Lee F Stanish, Olivia N Walser, and Rachel E Gallery
- Subjects
Medicine ,Science - Abstract
Soil microbial communities play a critical role in nutrient transformation and storage in all ecosystems. Quantifying the seasonal and long-term temporal extent of genetic and functional variation of soil microorganisms in response to biotic and abiotic changes within and across ecosystems will inform our understanding of the effect of climate change on these processes. We examined spatial and seasonal variation in microbial communities based on 16S rRNA gene sequencing and phospholipid fatty acid (PLFA) composition across four biomes: a tropical broadleaf forest (Hawaii), taiga (Alaska), semiarid grassland-shrubland (Utah), and a subtropical coniferous forest (Florida). In this study, we used a team-based instructional approach leveraging the iPlant Collaborative to examine publicly available National Ecological Observatory Network (NEON) 16S gene and PLFA measurements that quantify microbial diversity, composition, and growth. Both profiling techniques revealed that microbial communities grouped strongly by ecosystem and were predominately influenced by three edaphic factors: pH, soil water content, and cation exchange capacity. Temporal variability of microbial communities differed by profiling technique; 16S-based community measurements showed significant temporal variability only in the subtropical coniferous forest communities, specifically through changes within subgroups of Acidobacteria. Conversely, PLFA-based community measurements showed seasonal shifts in taiga and tropical broadleaf forest systems. These differences may be due to the premise that 16S-based measurements are predominantly influenced by large shifts in the abiotic soil environment, while PLFA-based analyses reflect the metabolically active fraction of the microbial community, which is more sensitive to local disturbances and biotic interactions. To address the technical issue of the response of soil microbial communities to sample storage temperature, we compared 16S-based community structure in soils stored at -80°C and -20°C and found no significant differences in community composition based on storage temperature. Free, open access datasets and data sharing platforms are powerful tools for integrating research and teaching in undergraduate and graduate student classrooms. They are a valuable resource for fostering interdisciplinary collaborations, testing ecological theory, model development and validation, and generating novel hypotheses. Training in data analysis and interpretation of large datasets in university classrooms through project-based learning improves the learning experience for students and enables their use of these significant resources throughout their careers.
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- 2015
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9. Soil biogeochemistry across Central and South American tropical dry forests
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Beatriz Salgado-Negret, Bonnie G. Waring, Camila Pizano, Nicolas A. Jelinski, Juan Manuel Dupuy, Annette M. Trierweiler, Maria G. Gei, Jennifer S. Powers, David Medvigy, Catherine M. Hulshof, Dan V. Du, Skip J. Van Bloem, Mark E. De Guzman, Jessica L. M. Gutknecht, G German Vargas, Andrew J. Margenot, and Naomi B. Schwartz
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Tropical and subtropical dry broadleaf forests ,Ecology ,Phosphorus ,chemistry.chemical_element ,Biogeochemistry ,Seasonality ,medicine.disease ,Nitrogen ,chemistry ,South american ,medicine ,Spatial ecology ,Environmental science ,Carbon ,Ecology, Evolution, Behavior and Systematics - Published
- 2021
10. Linking microbial community analysis and ecosystem studies: A rapid lipid analysis protocol for high throughput
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Teri C. Balser, Chao Liang, and Jessica L. M. Gutknecht
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chemistry.chemical_classification ,Nutrient cycle ,Ecology ,Soil Science ,Fatty acid ,Large sample ,chemistry.chemical_compound ,Hybrid protocol ,chemistry ,Microbial population biology ,Environmental science ,lipids (amino acids, peptides, and proteins) ,Extraction methods ,Ecosystem ,Food science ,Ecology, Evolution, Behavior and Systematics ,Fatty acid methyl ester - Abstract
During the past two decades interest in linking soil microbial community composition and activity with ecosystem scale field studies of nutrient cycling or plant community response to disturbances has grown. Despite its importance there are challenges in making this linkage. Foremost is the question of analytical feasibility. In general, microbiological community-level methodologies have not been readily adaptable to the large sample sizes necessary for ecosystem-scale research. As a result, it has been difficult to generate compatible microbial and ecosystem data sets. Soil lipid analysis shows potential as a middle ground between simple biomass measures and molecular profiling. However, the two protocols that have most often been followed are either rapid but indiscriminate (total lipid analysis or fatty acid methyl ester analysis; FAME), or precise but time consuming (phospholipid fatty acid analysis; PLFA). In this paper we report results from a standardized soil used test a modified extraction method (the ‘hybrid’ method) developed to balance the speed of FAME and the precision of PLFA in order to increase sample throughput. In comparing the three methods, we find that FAME and PLFA are qualitatively and quantitatively distinct. The FAME method yielded the highest fatty acid abundance, but also had high variance resulting in low precision. The PLFA method had precision, but low yield. The ‘hybrid’ method fell midway between FAME and PLFA for quantitative fatty acid yield. In addition, the hybrid extraction can be completed in a fraction of the time it takes for PLFA. The hybrid protocol appears to provide an optimal balance between effort and accuracy and therefore is a good choice for large-scale ecosystem studies.
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- 2019
11. Impacts of Sampling Design on Estimates of Microbial Community Diversity and Composition in Agricultural Soils
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Carl J. Rosen, Linda L. Kinkel, Michael J. Sadowsky, Jessica L. M. Gutknecht, Sarah C. Castle, and Deborah A. Samac
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0301 basic medicine ,Bacteria ,Ecology ,Soil test ,Microbiota ,Minnesota ,030106 microbiology ,Fungi ,Soil Science ,Sampling (statistics) ,Agriculture ,Biology ,Soil ,03 medical and health sciences ,030104 developmental biology ,Productivity (ecology) ,Microbial population biology ,Microbial ecology ,Soil water ,Sampling design ,Cover crop ,Phylogeny ,Soil Microbiology ,Ecology, Evolution, Behavior and Systematics - Abstract
Soil microbiota play important and diverse roles in agricultural crop nutrition and productivity. Yet, despite increasing efforts to characterize soil bacterial and fungal assemblages, it is challenging to disentangle the influences of sampling design on assessments of communities. Here, we sought to determine whether composite samples—often analyzed as a low cost and effort alternative to replicated individual samples—provide representative summary estimates of microbial communities. At three Minnesota agricultural research sites planted with an oat cover crop, we conducted amplicon sequencing for soil bacterial and fungal communities (16SV4 and ITS2) of replicated individual or homogenized composite soil samples. We compared soil microbiota from within and among plots and then among agricultural sites using both sampling strategies. Results indicated that single or multiple replicated individual samples, or a composite sample from each plot, were sufficient for distinguishing broad site-level macroecological differences among bacterial and fungal communities. Analysis of a single sample per plot captured only a small fraction of the distinct OTUs, diversity, and compositional variability detected in the analysis of multiple individual samples or a single composite sample. Likewise, composite samples captured only a fraction of the diversity represented by the six individual samples from which they were formed, and, on average, analysis of two or three individual samples offered greater compositional coverage (i.e., greater number of OTUs) than a single composite sample. We conclude that sampling design significantly impacts estimates of bacterial and fungal communities even in homogeneously managed agricultural soils, and our findings indicate that while either strategy may be sufficient for broad macroecological investigations, composites may be a poor substitute for replicated samples at finer spatial scales.
- Published
- 2019
12. Review of health economic analyses in atopic dermatitis: how diverse is the literature?
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Matthias Augustin, M. Gutknecht, and Rabea Reinert
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medicine.medical_specialty ,Cost effectiveness ,Cost-Benefit Analysis ,Dermatitis, Atopic ,03 medical and health sciences ,0302 clinical medicine ,Cost of Illness ,medicine ,Humans ,Pharmacology (medical) ,030212 general & internal medicine ,Intensive care medicine ,Disease burden ,Economic consequences ,Health Services Needs and Demand ,Health economics ,business.industry ,030503 health policy & services ,Health Policy ,Inflammatory skin disease ,food and beverages ,Health Care Costs ,General Medicine ,Atopic dermatitis ,medicine.disease ,Economics, Medical ,body regions ,Models, Economic ,Cost utility ,Economic evaluation ,0305 other medical science ,business - Abstract
Atopic dermatitis (AD) is a common chronic, pruritic inflammatory skin disease. It is associated with a high personal burden of illness and economic consequences. Since AD can occur at any age, and many treatments and prevention options exist, a high diversity of health economic findings can be expected.A literature search was performed in January 2018 with the objective to report on previously published health economic analyses in AD. In total, 89 analyses were identified. Most analyses focused on the cost-of-illness (n = 34; 38%) followed by cost-utility and/or cost-effectiveness evaluations (n = 26; 29%) and cost analyses (n = 12; 13%) of treatments in AD. Further evaluations dealt with the prevention of AD (n = 13; 15%). Besides the different methods of health economic analyses, high variety was identified concerning the target population, comprised costs, effectiveness measures, comparators, and the modeling method.Given the different health-care environments and methodologies chosen, health economic analyses in AD cannot be compared with each other and cannot be related to other landscapes of care. Nevertheless, the analyses identified give hint for a high socioeconomic impact of AD on the one hand and unmet needs from the patient perspective on the other.
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- 2018
13. Definition of psoriasis severity in routine clinical care: current guidelines fail to capture the complexity of long-term psoriasis management
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M. Gutknecht, Matthias Augustin, A Langenbruch, Ulrich Mrowietz, R von Kiedrowski, Kristian Reich, Diamant Thaçi, D. Maaßen, Marc Alexander Radtke, and Andreas Körber
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Adult ,Male ,medicine.medical_specialty ,Consensus ,Cross-sectional study ,Clinical Decision-Making ,Medizin ,macromolecular substances ,Dermatology ,Disease ,Severity of Illness Index ,Systemic therapy ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Quality of life ,Psoriasis Area and Severity Index ,Germany ,Psoriasis ,Severity of illness ,medicine ,Humans ,Aged ,business.industry ,Dermatology Life Quality Index ,Middle Aged ,medicine.disease ,Long-Term Care ,humanities ,Cross-Sectional Studies ,nervous system ,030220 oncology & carcinogenesis ,Practice Guidelines as Topic ,Quality of Life ,Female ,Dermatologic Agents ,business - Abstract
Background Assessment of disease severity is an essential component of psoriasis management. Moderate-to-severe disease qualifies for systemic treatment but different definitions are used. Objectives To analyse the impact of different severity definitions for psoriasis in real-world healthcare. Methods Cross-sectional data on 3274 patients with psoriasis from more than 200 dermatology offices and clinics across Germany were analysed for disease severity based on Psoriasis Area and Severity Index (PASI) and Dermatology Life Quality Index (DLQI). The proportions of patients having moderate-to-severe disease were determined accordingly. Results The proportion of patients meeting the European consensus criteria for moderate-to-severe psoriasis (PASI AND DLQI > 10) was 14·0%, although 45·3% attained at least PASI OR DLQI > 10. Consideration of all patients on systemic drugs as being 'moderate-to-severe' increased these proportions to 56·9% and 75·2%, respectively. When only PASI > 10 was used, moderate-to-severe disease affected 35·3% and 69·3%, respectively. Conclusions The proportion of patients with psoriasis under dermatological care considered to have moderate-to-severe disease varies considerably according to how the latter is defined, resulting in uncertainty and inequity of access to systemic therapy. We propose an international standardisation in this for the sake of more reliable treatment and healthcare planning.
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- 2018
14. Does the Dermatology Life Quality Index (DLQI) underestimate the disease‐specific burden of psoriasis patients?
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A Langenbruch, Matthias Augustin, M. Gutknecht, and Marc Alexander Radtke
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Adult ,Male ,medicine.medical_specialty ,Visual analogue scale ,Cross-sectional study ,Health Status ,Dermatology ,Severity of Illness Index ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Bias ,Cost of Illness ,Quality of life ,Psoriasis Area and Severity Index ,Surveys and Questionnaires ,Psoriasis ,Severity of illness ,Humans ,Medicine ,Disease burden ,Aged ,business.industry ,Dermatology Life Quality Index ,Middle Aged ,medicine.disease ,humanities ,Cross-Sectional Studies ,Infectious Diseases ,030220 oncology & carcinogenesis ,Quality of Life ,Physical therapy ,Female ,business - Abstract
Background The Dermatology Life Quality Index (DLQI) is the most frequently used health-related quality of life (HRQoL) instrument for skin diseases. According to the DLQI instructions, the responses 'not relevant' and 'my skin problem has not at all affected this aspect of life' ('not at all') have to be scored as 0 = no HRQoL impairments. Objective The aim of this study was to estimate potential bias of DLQI measurements for patients with psoriasis based on items considered to be not relevant. Methods One thousand two hundred forty-three patients with psoriasis were surveyed in a cross-sectional study. Disease severity (Psoriasis Area and Severity Index, PASI) and subjective health state (EuroQoL Visual Analogue Scale, EQ VAS) were compared per DLQI item between patients who answered the respective question 'not relevant' and those who answered 'not at all'. Results Patients who declared a DLQI item to be not relevant showed a higher disease severity and a lower health state. Conclusion Results indicate that patients who declare a DLQI item to be not relevant have a higher disease-related burden than those who do not feel affected by their psoriasis in the same aspect of life. If aspects of life are considered to be not relevant due to high disease burden, this should be reflected by a HRQoL instrument.
- Published
- 2018
15. Storage and export of soil carbon and mineral surface area along an erosional gradient in the Sierra Nevada, California
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Emmanuel J. Gabet, Jessica L. M. Gutknecht, Simon M. Mudd, Beth Weinman, Xiang Wang, and Kyungsoo Yoo
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chemistry.chemical_classification ,Total organic carbon ,010504 meteorology & atmospheric sciences ,Knickpoint ,Soil Science ,Soil science ,Weathering ,04 agricultural and veterinary sciences ,Soil carbon ,01 natural sciences ,chemistry ,Rock fragment ,Soil water ,040103 agronomy & agriculture ,Erosion ,0401 agriculture, forestry, and fisheries ,Environmental science ,Organic matter ,0105 earth and related environmental sciences - Abstract
Steep soil-mantled hillslopes are thought to be important sources of sediments and organic carbon (OC) to rivers. Minerals in these sediments may protect OC from decomposition, yet the significance of such interactions in steep upland soils remains poorly constrained particularly in relation to erosion rates. We examined a tributary basin draining to the Middle Folk Feather River in California, where knickpoint migration has created a series of hillslopes with erosion rates varying over an order of magnitude (35 to 250 mm kyr−1). This setting provides a unique opportunity to study soil OC pools and their erosional exports as a function of changes in erosion rates. Soil OC inventories were 37% lower at rapidly eroding sites relative to slowly eroding sites. This difference was driven by coarse rock contents as rapidly eroding soils had more rock fragments, limiting their capacities to store OC. Although clay contents in soils were negatively correlated with erosion rates, the total mineral specific surface area remained relatively invariant. Based on secondary phyllosilicate minerals present in the studied soils and our field observations of saprocks, we suggest that this discrepancy may have originated from different clay mineralogy (types and abundance) associated with different degrees of deep subsurface chemical weathering. Across the erosion gradient, the radiocarbon age of mineral associated organic matter (MOC) in saprock varied by a factor 2 (from 1045 to 2110 14C years), while soil turnover times estimated from soil thickness and erosion rates varied from 17 to 5.4 kyr. At the site eroding at the fastest rate, the soil turnover time approaches the 14C age of MOC, suggesting erosion can potentially limit the timescale over which MOC is replaced. We found that organic matter generally covered
- Published
- 2018
16. Soil organic carbon and mineral interactions on climatically different hillslopes
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Xiang Wang, Jessica L. M. Gutknecht, Kyungsoo Yoo, Ronald Amundson, Arjun M. Heimsath, and Adrian A. Wackett
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inorganic chemicals ,Hydrology ,010504 meteorology & atmospheric sciences ,Soil biology ,Soil organic matter ,Soil Science ,04 agricultural and veterinary sciences ,Soil carbon ,01 natural sciences ,Pedogenesis ,Soil water ,otorhinolaryngologic diseases ,040103 agronomy & agriculture ,Temperate climate ,Erosion ,0401 agriculture, forestry, and fisheries ,Environmental science ,Pedology ,sense organs ,psychological phenomena and processes ,0105 earth and related environmental sciences - Abstract
Climate and topography have been widely recognized but studied separately as important factors controlling soil organic carbon (SOC) dynamics. Subsequently, the significance of their interplay in determining SOC storages and their pools is not well understood. Here we examined SOC storages and SOC-mineral interactions along two hillslope transects in differing climate zones (MAP = 549 mm in semi-arid eucalyptus savannah vs. 816 mm in temperate eucalyptus forest) in southeastern Australia. On eroding slopes, SOC inventories were twice as large at the wetter site (4.5 ± 0.6 vs. 2.3 ± 0.9 kg m−2), whereas depositional soils had similar SOC inventories at both locations (7.5 ± 2.0 vs.7.0 ± 2.2 kg m−2). On eroding slopes, carbon concentrations of the mineral-associated SOC fraction ( 2.0 g cm−3) increased by ~50% with increasing rainfall, which was also positively correlated to abundances of clay minerals and pedogenic iron oxides. Within individual hillslopes, carbon concentrations of the mineral-associated SOC fraction doubled from eroding to depositional soils at the drier site, but no topographic trend was observed at the wetter site. The effects of topography on SOC inventories and mineral-associated SOC were more strongly expressed under the drier climate, where vegetation was sparser and soil erosion involved mineral grain size sorting. Our results demonstrate that SOC pools and their interactions with minerals are dependent on topographic locations, emphasizing the need to include geomorphic data when assessing climatic controls of SOC.
- Published
- 2018
17. Carbon Dosing Increases Nitrate Removal Rates in Denitrifying Bioreactors at Low-Temperature High-Flow Conditions
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Marta B. Roser, Jeffrey S. Strock, David J. Mulla, Gary W. Feyereisen, Kurt A. Spokas, and Jessica L. M. Gutknecht
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Environmental Engineering ,Hydraulic retention time ,Nitrogen ,chemistry.chemical_element ,010501 environmental sciences ,Management, Monitoring, Policy and Law ,01 natural sciences ,chemistry.chemical_compound ,Denitrifying bacteria ,Bioreactors ,Animal science ,Nitrate ,Biochar ,Hardwood ,Coir ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Water Science and Technology ,Nitrates ,Temperature ,04 agricultural and veterinary sciences ,Pollution ,Carbon ,chemistry ,Denitrification ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Sodium acetate - Abstract
Nitrogen losses from croplands contribute to impairment of water bodies. This laboratory experiment evaluated various C sources for use in a denitrifying bioreactor, a conservation practice designed to reduce N losses. The nitrate removal efficiency of candidate treatments (corn cobs [CC], corn cobs with modified coconut coir [CC+MC], corn cobs with modified coconut coir and modified macadamia shell biochar [CC+MC+MBC], wood chips [WC], wood chips with hardwood biochar [WC+BC], and wood chips with continuous sodium acetate addition [WC+A]) were tested with up-flow direction. Effluent was sampled after a repeated weekly flow regime with hydraulic residence times of 1.5, 8, 12, and 24 h. Column temperatures were 15°C for 14 wk (warm), 5°C for 13 wk (cold), and again 15°C for 7 wk (rewarm). Cumulative nitrate N load reduction was greatest for WC+A (80, 80, and 97% during the warm, cold, and rewarm runs, respectively). Corn cob treatments (CC, CC+MC, and CC+MC+MBC) had the second greatest cumulative load reductions for all three temperature experiments, and WC and WC+BC had the lowest performance under these conditions. The nitrate removal rate was optimum at the 1.5-h hydraulic residence time for the WC+A treatment: 43, 30, and 121 g N m⁻³ d⁻¹ for the warm, cold, and rewarm runs, respectively. Furthermore, acetate addition greatly improved wood chip performance and could be used to enhance nitrate N removal under the cold and high-flow-rate conditions of springtime drainage for the north-central United States.
- Published
- 2018
18. DNA Template Dilution Impacts Amplicon Sequencing-Based Estimates of Soil Fungal Diversity
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Carl J. Rosen, Zewei Song, Daryl M. Gohl, Linda L. Kinkel, Deborah A. Samac, Michael J. Sadowsky, Jessica L. M. Gutknecht, and Sarah C. Castle
- Subjects
0301 basic medicine ,Dna template ,030106 microbiology ,Plant Science ,Computational biology ,lcsh:Plant culture ,Biology ,lcsh:Microbial ecology ,DNA sequencing ,law.invention ,03 medical and health sciences ,Fungal Diversity ,law ,lcsh:SB1-1110 ,Microbiome ,Molecular Biology ,Gene ,Ecology, Evolution, Behavior and Systematics ,Polymerase chain reaction ,Ecology ,Species diversity ,lcsh:QK900-989 ,030104 developmental biology ,lcsh:Plant ecology ,lcsh:QR100-130 ,Species richness ,Agronomy and Crop Science - Abstract
Next generation sequencing of taxonomically relevant marker genes has enabled researchers to sample the richness, diversity, and composition of environmental microbiomes at previously unattainable depths. However, molecular methods may have unintended downstream consequences and the inadvertent undersampling of microbial communities may be a significant pitfall in microbiome profiling. One such procedure, dilution of the DNA template prior to polymerase chain reaction (PCR), may improve marker gene amplification by reducing chimeric read formation and decreasing PCR inhibitor concentrations. However, dilution unavoidably reduces target DNA template number per sample. We evaluated the effects of pre-PCR DNA template dilution on estimates of soil fungal microbiome diversity, composition, and species abundance distributions across a collection of 144 agricultural soil samples. Fungal DNA templates were serially diluted at 0-, 10-, 100-, and 1,000-fold and sequence data of diluted templates were compared with those of an identical set of undiluted templates. For three prairie soil samples, in addition to evaluating variation among replicates of individual samples, we serially diluted fungal DNA extracts from soil samples in triplicate and sequenced undiluted and diluted samples. DNA template dilution significantly reduced estimates of fungal richness and diversity, as compared with undiluted samples. Dilution of DNA template also resulted in reduced relative abundances of rare operational taxonomic units (OTUs) and increased relative abundances of common OTUs. Collectively, changes in OTU abundance distributions following dilution produced substantial shifts in overall fungal community composition. Our results highlight risks associated with sample dilution and point to the potential utility of quantifying pre-PCR template concentration in the estimation of microbiomes. We urge researchers to thoroughly document methods and to reconsider routine dilution of pre-PCR DNA templates particularly for low abundance microbiome samples. As efforts to profile environmental microbiomes using molecular sequencing approaches accelerate, developing an adequate understanding of potential methodological bottlenecks will increase our ability to accurately characterize and compare datasets.
- Published
- 2018
19. Cost-of-illness of patients with lymphoedema
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Katharina Herberger, Christine Blome, S Purwins, M. Gutknecht, K Klose, Desiree Ann-Christin Dietz, and Matthias Augustin
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Adult ,Male ,medicine.medical_specialty ,Total cost ,Lipolymphedema ,Dermatology ,030204 cardiovascular system & hematology ,03 medical and health sciences ,Indirect costs ,0302 clinical medicine ,Cost of Illness ,Quality of life ,Germany ,medicine ,Humans ,Lymphedema ,Disease management (health) ,Intensive care medicine ,health care economics and organizations ,Aged ,business.industry ,Middle Aged ,medicine.disease ,Infectious Diseases ,Cost driver ,030220 oncology & carcinogenesis ,Quality of Life ,Physical therapy ,Female ,Observational study ,business - Abstract
Background Chronic lymphedema is characterized by a continuous need for medical treatment, many comorbidities, and impaired quality of life. In Germany, about 4.5 million patients are affected by lymphedema. Thus, lymphedema causes high direct and indirect costs, even more in case of complications such as erysipelas and ulcers. Objective The aim of this study was to determinate the costs of illness of community lymphedema patients living in the metropolitan area of Hamburg, Germany. Methods An observational cross-sectional study in patients with lymphedema and combined lipolymphedema of any origin was performed analysing direct and indirect costs for the patients, the statutory health insurance, and society. Results In total, 348 patients (90.8% female) were examined and interviewed. The mean age of the patients was 57.3 ± 14.5 years. On average, the total costs per patient and year were € 5784, of which € 4445 (76.0%) were direct costs and € 1338 indirect costs. Within the direct medical costs, € 3796 were accounted for the statutory health insurances and € 649 for the patient. The main cost drivers were costs for manual decongestive therapy and disability costs. Conclusion Chronic lymphedema is associated with high direct and indirect costs. This community based study is the first cost analysis of chronic lymph- and combined lipolymphedema giving insights to economic impact of lymphedema treatment. There is a high need for structured disease management programs in order to diagnose and treat lymphedema early and to avoid complications, thus limiting socioeconomic burden. This article is protected by copyright. All rights reserved.
- Published
- 2017
20. Evidence of knee extensor dysfunction during sit-to-stand following distal femoral extension osteotomy and patellar tendon advancement in young adults with cerebral palsy: A pilot study
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Tom F. Novacheck, Sarah M Gutknecht, Jean L. Stout, Meghan E. Munger, Michael H. Schwartz, Elizabeth R. Boyer, Jennifer C. Laine, and Lucas H Araujo de Oliveira
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Knee Joint ,medicine.medical_treatment ,Tendon Transfer ,0206 medical engineering ,Biophysics ,Pilot Projects ,02 engineering and technology ,Osteotomy ,Cerebral palsy ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Patellar Ligament ,otorhinolaryngologic diseases ,medicine ,Humans ,Orthopedics and Sports Medicine ,Young adult ,Gait ,Retrospective Studies ,Knee extensors ,Sit to stand ,business.industry ,Cerebral Palsy ,Rehabilitation ,Patella ,medicine.disease ,020601 biomedical engineering ,Patellar tendon ,Biomechanical Phenomena ,Surgery ,Physical therapy ,Female ,business ,030217 neurology & neurosurgery - Abstract
A distal femoral extension osteotomy with patellar tendon advancement (DFEO+PTA) is a common treatment for individuals with cerebral palsy (CP) who walk in crouch. Musculoskeletal modeling suggests that the typical patella baja position post-DFEO+PTA may limit one's abilities to perform sit-to-stand (STS) tasks; however, STS function has not been assessed. Our purpose was to compare how well individuals who received a DFEO+PTA can perform a 5-times STS test (FTSST) eight or more years after surgery compared to their peers who did not receive a DFEO+PTA (non-DFEO+PTA group). Twenty-one participants completed the task (12 DFEO+PTA, 9 non-DFEO+PTA). Three-dimensional kinematics and kinetics were captured. Kinetics were non-dimensionalized to facilitate group comparisons. Non-DFEO+PTA participants performed the FTSST moderately faster than the DFEO+PTA group (median(IQR), 14.6(9.3) seconds vs. 20.3(10.1) seconds, non-parametric effect size ɣ=0.97, p=0.241). Peak negative knee power was larger for the non-DFEO+PTA group (Mean±SD, -0.063±0.025 vs. -0.048± 0.020, Cohen's d=0.66, p=0.165). A similar but weaker trend was observed for negative hip power (median(IQR) -0.120(0.066) vs. -0.105(0.044), ɣ=0.43, p=0.671). Both groups used their hips approximately twice as much as their knees to perform the task. The functional deficit among DFEO+PTA participants may be due to patella baja decreasing the knee extensor moment arm, which concurs with the modeling prediction. The group differences may also be due to the non-DFEO+PTA group being slightly higher functioning. Future research is warranted to determine if optimizing patella position during a DFEO+PTA may improve unaided STS function without compromising gait improvements.
- Published
- 2017
21. Eine probabilistische Kosteneffektivitätsanalyse einer azellulären synthetischen Matrix (ASM) als Ergänzung zur Standardversorgung venöser und gemischter Ulzera cruris in Deutschland auf Basis eines Discrete-Event-Simulations-Modells
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D Droeschel, Matthias Augustin, F. Lindsay, M. Gutknecht, Stefan Walzer, and RJ Shannon
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Gynecology ,medicine.medical_specialty ,Cost effectiveness ,business.industry ,Health Policy ,medicine ,business - Abstract
Zusammenfassung Ziel Das vorliegende gesundheitsökonomische Modell wurde entwickelt, um in Deutschland standardmäßig Therapien im Bereich chronische Wunden systematisch und vergleichend zu analysieren. In der zugrunde liegenden Analyse wurden die gesundheitsökonomischen Parameter von Patienten mit einem Ulcus cruris venosum/mixtum, die zusätzlich zur Standardversorgung (SV) mit einer azellulären synthetischen Matrix (ASM) behandelt wurden, berechnet und mit denen von Patienten verglichen, die nur eine Standardversorgung erhalten haben. Methodik Zunächst wurde in den (Standard-)Literaturdatenbanken systematisch nach einem gesundheitsökonomischen Modell gesucht. Die Ergebnisse dieser Literatursuche werden in einer anderen Publikation zur Methodik und Modellbeschreibung ausführlich diskutiert. Angesichts des Fehlens eines publizierten, akzeptierten und für Deutschland adäquaten Modells wurde in Form eines Discrete-Event-Simulations-Modells (DES-Modell) ein neues gesundheitsökonomisches Modell für den Bereich chronische Wunden entwickelt. Auf Basis des DES-Modells wurde eine Kosteneffektivitätsanalyse aus Sicht der Gesetzlichen Krankenversicherung (GKV) durchgeführt. Für die Kostendaten wurden GKV-Routinedaten genutzt. Patienten aus dem Deutschen Register chronischer Wunden (DRCW), die nur mit der SV behandelt wurden und ähnliche Patientencharakteristika aufwiesen, wurden mit Patienten aus einer einarmigen multizentrischen Phase-II-Studie einer azellulären synthetischen Matrix (ASM) verglichen. Die Wirksamkeit der Behandlung (1-Jahres-Vorhersage) wurde mittels Kaplan-Meier-Kurven für die 12-Wochen-Heilungszeit der SV + ASM im Vergleich zur alleinigen Behandlung mit der SV berechnet. Die Modellergebnisse wurden mittels einer probabilistischen Sensitivitätsanalyse für ulzerationsfreie Tage validiert und die Ergebnisse jeweils in einem Scatterplot der geschätzten gemeinsamen Dichte der inkrementellen Kosten und der inkrementellen Effekte der SV versus der SV + ASM sowie in einer Kosteneffektivitäts-Akzeptanz-Kurve dargestellt. Ergebnisse Die Kosteneffektivitätsanalyse zeigte, dass eine auf SV + ASM basierende Therapie gemäß dem Modell effektiver (0,008 inkrementeller Effekt ambulant; −0,045 inkrementeller Effekt stationär) und kostensparender (−321,14 €) ist und somit aus gesundheitsökonomischer Sicht als dominant gegenüber der SV angesehen werden kann. Zusätzlich zeigten sich die Therapien in der Versorgungssäule Facharzt gegenüber denen in der Versorgungssäule Hausarzt als zumindest gleich effektiv und kosteneinsparend und somit dominant. Bei Berücksichtigung der ambulanten Pflege in Verbindung mit dem jeweiligen Arzt war die hausärztliche Versorgung zwar gleich effektiv, aber kostensparender (129,40 € vs. 187,20 € = −57,80 €) als die fachärztliche Versorgung und somit dominant. Die Dominanz nach Hausarzt und Facharzt sowie mit ambulanter Pflege war konsistent zu der, die sich aus der Kosteneffektivität ergibt. Schlussfolgerung Die azelluläre synthetische Matrix (ASM) bestätigte in einer klinischen Studie ihre signifikanten Heilungschancen, die in das gesundheitsökonomische Modell zur chronischen Wunde eingeflossen sind. Unter den zugrunde liegenden Modellannahmen bekräftigt das Modell angesichts von Kosteneinsparungen in allen Behandlungspfaden eines Ulcus cruris venosum/mixtum die Wirtschaftlichkeit einer möglichen Verordnung der ASM im deutschen Kontext.
- Published
- 2017
22. Leaf litter diversity alters microbial activity, microbial abundances, and nutrient cycling in a subtropical forest ecosystem
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Katrin N. Leppert, Helge Bruelheide, François Buscot, Pascal A. Niklaus, David Eichenberg, Zhiqin Pei, and Jessica L. M. Gutknecht
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0106 biological sciences ,Nutrient cycle ,Ecology ,Biodiversity ,Species diversity ,04 agricultural and veterinary sciences ,Plant litter ,Biology ,010603 evolutionary biology ,01 natural sciences ,Microbial population biology ,040103 agronomy & agriculture ,Litter ,0401 agriculture, forestry, and fisheries ,Environmental Chemistry ,Ecosystem ,Species richness ,human activities ,Earth-Surface Processes ,Water Science and Technology - Abstract
Human activities affect both tree species composition and diversity in forested ecosystems. This in turn alters the species diversity of plant litter and litter quality, which may have cascading effects on soil microbial communities and their functions for decomposition and nutrient cycling. We tested microbial responses to litter species diversity in a leaf litter decomposition experiment including monocultures, 2-, and 4-species mixtures in the subtropical climate zone of southeastern China. Soil microbial community composition was assessed by lipid analysis, and microbial functions were measured using extracellular enzyme activity and gross rates of nitrogen mineralization. We observed a positive relationship between litter species diversity and abundances of mycorrhizal fungi and actinomycetes. Alternatively, enzyme activities involved in carbon and phosphorus acquisition, and enzyme indices of relative carbon limitation, were higher only in the 4-species mixtures. This suggests that the minimum basal substrate level for enzyme production was reached, or that limitation was higher, at the highest diversity level only. Responses to litter diversity also changed over time, where phosphatase responses to litter diversity were strongest early in decomposition and the indices of carbon limitation relative to other nutrients showed stronger responses later in decomposition. Enzyme activities were related to lipid biomarker data and the mass of litter remaining at the third time point, but relationships between enzyme activity and the mass of litter remaining were not consistent across other time points. We conclude that litter species richness will likely only reduce microbial functions at key intervals of diversity loss while microbial growth is more sensitive to incremental diversity loss, with no clear relationships between them or to ecosystem functions. The observed litter diversity effects on soil microbial biomass and enzyme activity indicate interactions of aboveground and belowground communities, and together with environmental conditions they are important for maintaining ecosystem functions.
- Published
- 2017
23. Cost-effectiveness of an 8% Capsaicin Patch in the Treatment of Brachioradial Pruritus and Notalgia Paraesthetica, Two Forms of Neuropathic Pruritus
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Olga Herrlein, M. Gutknecht, Anette Maria Dieckhöfer, Matthias Augustin, Hannah Lüling, Claudia Zeidler, S. Steinke, and Sonja Ständer
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Male ,Visual Analog Scale ,Cost effectiveness ,Visual analogue scale ,Cost-Benefit Analysis ,Transdermal Patch ,Dermatology ,Brachioradial pruritus ,030207 dermatology & venereal diseases ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Quality of life ,030202 anesthesiology ,Rating scale ,medicine ,Humans ,Verbal Rating Scale ,Paresthesia ,Prospective Studies ,Pain Measurement ,Retrospective Studies ,business.industry ,Pruritus ,Life Quality Index ,Antipruritics ,General Medicine ,Middle Aged ,medicine.disease ,Treatment Outcome ,chemistry ,Capsaicin ,Anesthesia ,Quality of Life ,Female ,business - Abstract
In brachioradial pruritus and notalgia paraesthetica, the 8% capsaicin patch is a novel and effective, but cost-intense, therapy. Routine data for 44 patients were collected 6 months retrospectively and prospectively to first patch application. The cost to health insurance and the patient, and patient-reported outcomes were analysed (visual analogue scale, numerical rating scale, verbal rating scale for pruritus symptoms, Dermatological Life Quality Index, and Patient Benefit Index). Mean inpatient treatment costs were reduced by €212.31, and mean outpatient treatment and medication costs by €100.74 per patient (p.p.). However, these reductions did not offset the high cost of the patch itself (€767.02 p.p.); thus the total cost to health insurance increased by €453.97 p.p. (p ≤ 0.01). The additional costs of therapy to the patient decreased by €441.06, thus the overall cost p.p. remained approximately the same (€3,306.03 vs. €3,318.94). Capsaicin patch therapy resulted in reduced pruritus, improved quality of life and greater patient benefit, thus long-term cost-efficiency analyses are necessary.
- Published
- 2017
24. Non-symbiotic soil microbes are more strongly influenced by altered tree biodiversity than arbuscular mycorrhizal fungi during initial forest establishment
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Peter B. Reich, Sarah E. Hobbie, Jake J. Grossman, Peter G. Kennedy, Jeannine Cavender-Bares, Allen J Butterfield, and Jessica L. M. Gutknecht
- Subjects
0106 biological sciences ,0301 basic medicine ,Microorganism ,Biodiversity ,Fungus ,Forests ,01 natural sciences ,Applied Microbiology and Biotechnology ,Microbiology ,Juniperus virginiana ,Trees ,Soil ,03 medical and health sciences ,Abundance (ecology) ,Mycorrhizae ,Biomass ,Soil Microbiology ,Biomass (ecology) ,Bacteria ,Ecology ,biology ,Host (biology) ,Fungi ,biology.organism_classification ,030104 developmental biology ,Species richness ,human activities ,010606 plant biology & botany - Abstract
While the relationship between plant and microbial diversity has been well studied in grasslands, less is known about similar relationships in forests, especially for obligately symbiotic arbuscular mycorrhizal (AM) fungi. To assess the effect of varying tree diversity on microbial alpha- and beta-diversity, we sampled soil from plots in a high-density tree diversity experiment in Minnesota, USA, 3 years after establishment. About 3 of 12 tree species are AM hosts; the other 9 primarily associate with ectomycorrhizal fungi. We used phospho- and neutral lipid fatty acid analysis to characterize the biomass and functional identity of the whole soil bacterial and fungal community and high throughput sequencing to identify the species-level richness and composition of the AM fungal community. We found that plots of differing tree composition had different bacterial and fungal communities; plots with conifers, and especially Juniperus virginiana, had lower densities of several bacterial groups. In contrast, plots with a higher density or diversity of AM hosts showed no sign of greater AM fungal abundance or diversity. Our results indicate that early responses to plant diversity vary considerably across microbial groups, with AM fungal communities potentially requiring longer timescales to respond to changes in host tree diversity.
- Published
- 2019
25. Developments in Agricultural Soil Quality and Health: Reflections by the Research Committee on Soil Organic Matter Management
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William R. Horwath, Jessica L. M. Gutknecht, Daniel C. Olk, Ray R. Weil, Lisa K. Tiemann, Sieglinde S. Snapp, Sindhu Jagadamma, Mark S. Coyne, Larry J. Cihacek, Rhae A. Drijber, Julie M. Grossman, Matthew D. Ruark, Ronald F. Turco, and Michelle M. Wander
- Subjects
lcsh:GE1-350 ,Soil health ,Minimum Data Set ,Resource (biology) ,soil health ,010504 meteorology & atmospheric sciences ,Land use ,business.industry ,Soil organic matter ,Environmental resource management ,010501 environmental sciences ,01 natural sciences ,Soil quality ,indicators ,Soil structure ,Agriculture ,frameworks ,soil quality ,Business ,soil services ,public-private partnerships (PPP) ,lcsh:Environmental sciences ,0105 earth and related environmental sciences ,General Environmental Science - Abstract
The North Central Education and Research Activity Committee (NCERA-59) was formed in 1952 to address how soil organic matter formation and management practices affect soil structure and productivity. It is in this capacity that we comment on the science supporting soil quality and associated soil health assessment for agricultural lands with the goal of hastening progress in this important field. Even though the suite of soil quality indicators being applied by U.S. soil health efforts closely mirrors the “minimum data set” we developed and recommended in the mid-1990s, we question whether the methods or means for their selection and development are sufficient to meet current and emerging soil health challenges. The rush to enshrine a standard suite of dated measures may be incompatible with longer-term goals. Legitimate study of soil health considers soil change accrued over years to decades that influence on- and off-site function. Tailoring of methods to local conditions is needed to effectively apply and interpret indicators for different soil resource regions and land uses. Adherence to a set suite of methods selected by subjective criteria should be avoided, particularly when we do not yet have adequate data or agreed upon interpretive frameworks for many so-called “Tier 1” biological indicators used in soil health assessment. While pooling data collected by producer-groups is one of the most exciting new trends in soil health, standardizing methods to meet broad inventory goals could compromise indicator use for site or application-specific problem solving. Changes in our nation's research landscape are shifting responsibility for soil stewardship from national and state government backed entities to public-private partnerships. As a result, it is critical to ensure that the data needed to assess soil health are generated by reproducible methods selected through a transparent process, and that data are readily available for public and private sector use. Appropriate methods for engagement need to be applied by public-private research partnerships as they establish and expand coordinated research enterprises that can deliver fact-based interpretation of soil quality indicators within the type of normative soil health framework conceived by USDA over 20 years ago. We look to existing examples as we consider how to put soil health information into the hands of practitioners in a manner that protects soils' services.
- Published
- 2019
26. Characterizing treatment-related patient needs in atopic eczema: insights for personalized goal orientation
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M. Gutknecht, Matthias Augustin, Neuza Silva, S. Steinke, Christine Blome, Rachel Sommer, Sonja Ständer, Natalia Kirsten, Thomas Werfel, and A Langenbruch
- Subjects
Adult ,Male ,Pediatrics ,medicine.medical_specialty ,Cross-sectional study ,Dermatology ,Disease ,Dermatitis, Atopic ,030207 dermatology & venereal diseases ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Surveys and Questionnaires ,Health care ,Outcome Assessment, Health Care ,medicine ,Outpatient clinic ,Humans ,SCORAD ,Young adult ,Disease burden ,medicine.diagnostic_test ,business.industry ,Middle Aged ,Infectious Diseases ,Cross-Sectional Studies ,030228 respiratory system ,Needs assessment ,Quality of Life ,Female ,business ,Goals ,Needs Assessment - Abstract
Background Atopic eczema (AE) is a common and burdensome chronic skin disease. Clinical guidelines suggest an evidence-based, personalized and stepwise treatment approach. Only few studies have so far focused on the specific patient needs in treatment. Objectives To characterize therapeutic needs of patients with AE in routine care. Methods Nationwide cross-sectional study in 91 dermatology practices and outpatient clinics. Descriptive statistics were used for valuation. Comparisons of HRQoL and general health status were performed including subgroups (age, gender and disease duration). Group comparisons of patient needs were performed for age groups, gender and disease duration. Correlations between patients' needs (PNQ) and HRQoL, generic health status and severity were tested. In addition, a hierarchical regression analysis was performed to determine which variables contribute to explain the variance in patient needs. Results Analysis of 1678 patients (60.5% female, mean age 38.35 ± 15.92 years) revealed a high disease burden with mean SCORAD of 42.26 ± 18.63, mean DLQI of 8.49 ± 6.45 and mean EQ VAS of 63.62 ± 21.98. Among the patient needs that were most frequently rated as 'quite important'/'very important' were as follows: 'to be free of itching' (96.0%), 'to get better skin quickly' (87.7%) and 'to be healed of all skin defects' (85.7%). In general, older people, women and patients who had been diagnosed with AE for 1 year or less rated the treatment needs as more important than younger patients, men and patients who had been diagnosed with AE for more than 1 year. Major determinants of higher needs were skin-related quality of life impairments, higher disease severity and higher age. Conclusions Patients with AE show a high number and variety of therapeutic needs related to disease signs and symptoms, which are associated with individual disease burden. The patient needs vary substantially according to patient characteristics. Identification of patient-specific needs may support personalized, patient-centred care and shared decision-making.
- Published
- 2019
27. Soil microbial restoration strategies for promoting climate‐ready prairie ecosystems
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Kathryn M. Docherty and Jessica L. M. Gutknecht
- Subjects
0106 biological sciences ,Ecology ,Climate ,010604 marine biology & hydrobiology ,General Medicine ,Biology ,Grassland ,010603 evolutionary biology ,01 natural sciences ,Mesocosm ,Soil conditioner ,Soil ,Microbial population biology ,Agronomy ,Metagenomics ,RNA, Ribosomal, 16S ,Soil water ,Ecosystem ,Species richness ,Restoration ecology ,Soil Microbiology - Abstract
Tractable practices for soil microbial restoration in tallgrass prairies reclaimed from agriculture are a critical gap in traditional ecological restoration. Long-term fertilization and tilling permanently alter soil bacterial and fungal communities, requiring microbe-targeted restoration methods to improve belowground ecosystem services and carbon storage in newly restored prairies. These techniques are particularly important when restoring for climate-ready ecosystems, adapted to altered temperature regimes. To approach these issues, we conducted a multi-factorial greenhouse experiment to test the effects of plant species richness, soil amendment and elevated temperature on soil microbial diversity, growth, and function. Treatments consisted of three seedlings of one plant species (Andropogon gerardii) or one seedling each of three plant species (A. gerardii, Echinacea pallida, Coreopsis lanceolata). Soil amendments included cellulose addition, inoculation with a microbial community collected from an undisturbed remnant prairie, and a control. We assessed microbial communities using extracellular enzyme assays, Illumina sequencing of the bacterial 16S rRNA gene, predicted bacterial metabolic pathways from sequence data and phospholipid fatty acid analysis (PLFA), which includes both bacterial and fungal lipid abundances. Our results indicate that addition of cellulose selects for slow-growing bacterial taxa (Verrucomicrobia) and fungi at ambient temperature. However, at elevated temperature, selection for slow-growing bacterial taxa is enhanced, while selection for fungi is lost, indicating temperature sensitivity among fungi. Cellulose addition was a more effective means of altering soil community composition than addition of microbial communities harvested from a remnant prairie. Soil water content was typically higher in the A. gerardii treatment alone, regardless of temperature, but at ambient temperature only, predicted metagenomics pathways for bacterial carbon metabolism were more abundant with A. gerardii. In summary, these results from a mesocosm test case indicate that adding cellulose to newly restored soil and increasing the abundance of C4 grasses, such as A. gerardii, can select for microbial communities adapted for slow growth and carbon storage. Further testing is required to determine if these approaches yield the same results in a field-level experiment.
- Published
- 2019
28. Time to revise the Dermatology Life Quality Index scoring in psoriasis treatment guidelines
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Marc Alexander Radtke, Éva Remenyik, Andrea Szegedi, László Gulácsi, A.K. Poór, Matthias Augustin, Péter Holló, Fanni Rencz, M. Gutknecht, Valentin Brodszky, Márta Péntek, Miklós Sárdy, and A Langenbruch
- Subjects
Adult ,Male ,medicine.medical_specialty ,business.industry ,Dermatology ,Dermatology Life Quality Index ,Middle Aged ,Severity of Illness Index ,Infectious Diseases ,Family medicine ,Surveys and Questionnaires ,Practice Guidelines as Topic ,medicine ,Quality of Life ,Humans ,Psoriasis ,Female ,business ,Psoriasis treatment ,Aged - Published
- 2019
29. Long-term elevated CO2 shifts composition of soil microbial communities in a Californian annual grassland, reducing growth and N utilization potentials
- Author
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Tong Yuan, Kathryn M. Docherty, Qiaoshu Zheng, Xavier Le Roux, Jizhong Zhou, Yunfu Gu, Shikui Dong, Yunfeng Yang, Mengting Yuan, Sihang Yang, Zhou Shi, Jessica L. M. Gutknecht, Xingyu Ma, Bruce A. Hungate, Audrey Niboyet, Christopher B. Field, Nona R. Chiariello, Laboratoire d'Ecologie Microbienne - UMR 5557 (LEM), Centre National de la Recherche Scientifique (CNRS)-Ecole Nationale Vétérinaire de Lyon (ENVL)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National de la Recherche Agronomique (INRA)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS), Tsinghua University [Beijing] (THU), University of Oklahoma (OU), Stanford University, Western Michigan University [Kalamazoo], Beijing Normal University (BNU), Sichuan Agricultural University, Helmholtz Zentrum für Umweltforschung = Helmholtz Centre for Environmental Research (UFZ), Minnesota State University [Moorhead], Minnesota State Colleges and Universities system, Northern Arizona University [Flagstaff], Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Ecole Nationale Vétérinaire de Lyon (ENVL)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS), Institut d'écologie et des sciences de l'environnement de Paris (iEES Paris ), Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), AgroParisTech, Lawrence Berkeley National Laboratory [Berkeley] (LBNL), United States Department of Energy (DOE) National Science Foundation (NSF) DEB-0092642/0445324National Natural Science Foundation of China 41471202/41430856Chinese Academy of Sciences XDB15010102The David & Lucile Packard FoundationMorgan Family Foundation INSU, CNRS -EC2CO Program (project INTERACT) State Key Joint Laboratory of Environmental Simulation and Pollution Control, Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Ecole Nationale Vétérinaire de Lyon (ENVL), and Institut de Recherche pour le Développement (IRD)-Sorbonne Université (SU)-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12)-Centre National de la Recherche Scientifique (CNRS)-Université de Paris (UP)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
- Subjects
Environmental Engineering ,010504 meteorology & atmospheric sciences ,MiSeq sequencing ,[SDV]Life Sciences [q-bio] ,Microbial communities ,010501 environmental sciences ,01 natural sciences ,chemistry.chemical_compound ,Animal science ,Nitrate ,Annual grassland ,Environmental Chemistry ,Ecosystem ,Ammonium ,Waste Management and Disposal ,Relative species abundance ,ComputingMilieux_MISCELLANEOUS ,0105 earth and related environmental sciences ,biology ,15. Life on land ,Ribosomal RNA ,Pollution ,Enzyme assay ,chemistry ,Microbial population biology ,13. Climate action ,GeoChip ,biology.protein ,Composition (visual arts) ,Elevated CO2 - Abstract
International audience; The continuously increasing concentration of atmospheric CO2 has considerably altered ecosystem functioning. However, few studies have examined the long-term (i.e. over a decade) effect of elevated CO2 on soil microbial communities. Using 16S rRNA gene amplicons and a GeoChip microarray, we investigated soil microbial communities from a Californian annual grassland after 14 years of experimentally elevated CO2 (275 ppm higher than ambient). Both taxonomic and functional gene compositions of the soil microbial community were modified by elevated CO2. There was decrease in relative abundance for taxa with higher ribosomal RNA operon (rrn) copy number under elevated CO2, which is a functional trait that responds positively to resource availability in culture. In contrast, taxa with lower rrn copy number were increased by elevated CO2. As a consequence, the abundance-weighted average rrn copy number of significantly changed OTUs declined from 2.27 at ambient CO2 to 2.01 at elevated CO2. The nitrogen (N) fixation gene nifH and the ammonium-oxidizing gene amoA significantly decreased under elevated CO2 by 12.6% and 6.1%, respectively. Concomitantly, nitrifying enzyme activity decreased by 48.3% under elevated CO2, albeit this change was not significant. There was also a substantial but insignificant decrease in available soil N, with both nitrate (NO3) (-27.4%) and ammonium (NH4+) (-15.4%) declining. Further, a large number of microbial genes related to carbon (C) degradation were also affected by elevated CO2, whereas those related to C fixation remained largely unchanged. The overall changes in microbial communities and soil N pools induced by long-term elevated CO2 suggest constrained microbial N decomposition, thereby slowing the potential maximum growth rate of the microbial community.
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- 2019
30. Soil and tree species traits both shape soil microbial communities during early growth of Chinese subtropical forests
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Peter Kühn, Zhiqin Pei, Wenzel Kröber, Ying Li, François Buscot, Helge Bruelheide, David Eichenberg, Thomas Scholten, Goddert von Oheimb, Jessica L. M. Gutknecht, and Oliver Purschke
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0106 biological sciences ,Subtropical forest ,media_common.quotation_subject ,Soil biology ,Soil Science ,Biology ,complex mixtures ,010603 evolutionary biology ,01 natural sciences ,Microbiology ,Competition (biology) ,Soil pH ,Soil ecology ,Ecosystem ,Water content ,Plant phylogeny ,Tree functional traits ,media_common ,Biomass (ecology) ,Bacteria ,Ecology ,Fungi ,food and beverages ,04 agricultural and veterinary sciences ,Lipid analysis ,Ecosystems Research ,Soil water ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Soil properties - Abstract
A better understanding of the linkages between aboveground and belowground biotic communities is needed for more accurate predictions about how ecosystems may be altered by climate change, land management, or biodiversity loss. Soil microbes are strongly affected by multiple factors including local abiotic environmental conditions and plant characteristics. To find out how soil microbial communities respond to multiple facets of the local soil and plant environment, we analysed soil lipid profiles associated with three-year-old monocultures of 29 tree species. These species are native of the diverse subtropical forests of southeast China and greatly vary in functional traits, growth or biomass characteristics, and phylogenetic relatedness. Along with the traits of each tree species, we also determined the soil and plot characteristics in each monoculture plot and tested for phylogenetic signals in tree species-specific microbial indicators. Microbial community structure and biomass were influenced by both soil properties and plant functional traits, but were not related to the phylogenetic distances of tree species. Specifically, total microbial biomass, indicators for fungi, bacteria, and actinomycetes were positively correlated with soil pH, soil organic nitrogen, and soil moisture. Our results also indicate that leaf dry matter content and the leaf carbon to nitrogen ratio influence multivariate soil microbial community structure, and that these factors and tree growth traits (height, crown or basal diameter) positively promote the abundances of specific microbial functional groups. At the same time, a negative correlation between leaf nitrogen content and Gram positive bacterial abundance was detected, indicating plant–microbial competition for nitrogen in our system. In conclusion, even at early stages of tree growth, soil microbial community abundance and structure can be significantly influenced by plant traits, in combination with local soil characteristics.
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- 2016
31. Monthly dynamics of microbial community structure and their controlling factors in three floodplain soils
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Uwe Langer, Elke Schulz, M. Moche, Jörg Rinklebe, and Jessica L. M. Gutknecht
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Biomass (ecology) ,Flood myth ,Ecology ,Soil Science ,chemistry.chemical_element ,Microbiology ,Carbon cycle ,Microbial population biology ,chemistry ,Environmental chemistry ,Soil water ,Environmental science ,Ecosystem ,Water content ,Carbon - Abstract
Seasonal dynamics of microbial community under frequently fluctuating oxidized and reduced conditions in floodplain soils are poorly understood, but are considered to be important for understanding microbial community and carbon cycling dynamics in these ecosystems. We determined the microbial community structure using phospholipid fatty acid analysis (PLFA) of three different floodplain soils (Eutric Gleysol = GLe, Eutric Fluvisol = FLe, and Mollic Fluvisol = FLm) at the Elbe River, Germany, for 17 months. Flood duration, soil moisture, soil temperature were also monitored, and hot and cold water extractable carbon (C HWE , C CWE ) were determined. Flood duration seems to have a negative impact on total PLFA biomass which increased in the order GLe HWE , C CWE in our soils.
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- 2015
32. The rhizosphere and cropping system, but not arbuscular mycorrhizae, affect ammonia oxidizing archaea and bacteria abundances in two agricultural soils
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Jessica L. M. Gutknecht, Thomas P. Brutnell, Kirsten S. Hofmockel, Cassandra J. Wattenburger, Quan Zhang, and Larry J. Halverson
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0106 biological sciences ,Rhizosphere ,Ecology ,fungi ,Bulk soil ,food and beverages ,Soil Science ,04 agricultural and veterinary sciences ,01 natural sciences ,Agricultural and Biological Sciences (miscellaneous) ,Manure ,chemistry.chemical_compound ,chemistry ,Agronomy ,Soil water ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Ammonium ,Nitrification ,Cropping system ,Plant nutrition ,010606 plant biology & botany - Abstract
Arbuscular mycorrhizal fungi (AMF) form symbioses with roots that can enhance plant nutrition. While AMF have been shown to have a role in soil nitrogen (N) cycling, it is unclear whether AMF affect N cycling microbes such as ammonia-oxidizing bacteria (AOB) and archaea (AOA), which convert ammonium into nitrite in the first step of nitrification. In this study, we examined the effects of AMF on AOA and AOB abundances within the corn rhizosphere and bulk soil of conventional (corn-soybean rotation with inorganic fertilizer) and diversified (corn-soybean-oats/alfalfa-oats rotation with composted manure) systems. We hypothesized that AMF would decrease AOA and AOB abundances in a cropping-system dependent manner, possibly due to competition for ammonium. We grew corn deficient or proficient in AMF symbiosis in microcosms for 10 weeks. At the end of the experiment, both soils planted with the AMF-proficient corn genotype had higher ammonium and lower nitrate pool sizes compared to the same soils planted with the AMF-deficient corn genotype. Likewise, total plant N was higher in the AMF-proficient genotype compared to the AMF-deficient genotype. Despite changes in soil inorganic N pool sizes, AOA and AOB abundances were unaffected by plant AMF-proficiency. Instead, AOA abundance was greater in the rhizosphere than in the bulk soil regardless of cropping system, and AOB abundance was greater in the conventional than the diversified cropping system soil regardless of proximity to the root. These data indicate that 1) AMF did not affect AOA or AOB abundance in these N-rich soils but other factors such as root proximity and inorganic fertilization did and 2) AOA and AOB have differing ecological niches within rhizosphere and bulk soil that should be considered when managing for nitrogen losses.
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- 2020
33. Cultivar and phosphorus effects on switchgrass yield and rhizosphere microbial diversity
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Thomas Kaiser, Christopher Staley, Michael J. Sadowsky, Craig C. Sheaffer, Anne Sawyer, John A. Lamb, Jessica L. M. Gutknecht, and Carl J. Rosen
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Perennial plant ,chemistry.chemical_element ,Panicum ,Applied Microbiology and Biotechnology ,03 medical and health sciences ,Nutrient ,Bioenergy ,Cultivar ,Soil Microbiology ,030304 developmental biology ,0303 health sciences ,Rhizosphere ,biology ,Bacteria ,030306 microbiology ,Phosphorus ,Microbiota ,Fungi ,General Medicine ,biology.organism_classification ,chemistry ,Agronomy ,Loam ,Panicum virgatum ,Biotechnology - Abstract
Switchgrass (Panicum virgatum L.) is a native perennial grass identified as a promising biofuel crop for production on marginal agricultural lands. As such, research into switchgrass fertility and the switchgrass rhizosphere microbiome has been ongoing in an effort to increase production sustainability. We examined the effects of cultivar and phosphorus (P) fertilization on biomass yield, P removal, and rhizosphere bacterial and fungal community structure in three switchgrass cultivars: Sunburst, Shawnee, and Liberty. The Liberty cv. is the first lowland-type bioenergy switchgrass adapted to USDA hardiness zones 4, 5, and 6. On a medium soil test P clay loam soil, biomass yield response to applied P was linear, increasing 135 kg ha−1 for every kilogram of P applied prior to establishment. Average post-frost biomass yield was 9.6 Mg ha−1 year−1 when unfertilized, and maximum biomass yield was 10.3 Mg ha−1 year−1 when fertilized at 58.6 kg ha−1 P, suggesting that P application on medium soil test P soils is beneficial for switchgrass establishment and early growth. Switchgrass cv. Shawnee was more productive than cvs. Liberty or Sunburst (11.3, 10.2, and 8.6 Mg ha−1 year−1, respectively). Both bacterial and fungal communities were significantly shaped by cultivar. These shifts, while inconsistent between year and cultivar, may reflect a selection of the microbial community from that present in soil to maximize total nutrient uptake, regardless of additional P amendments. Phosphorus fertilization did not affect microbial community structure. Results of this study suggest that the cultivar-associated selection of particular microbial taxa may have implications for increased productivity.
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- 2018
34. Measuring the importance of health domains in psoriasis – discrete choice experiment versus rating scales
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Matthias Augustin, M. Gutknecht, Marion Danner, Marthe-Lisa Schaarschmidt, and Christine Blome
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Medicine (miscellaneous) ,Discrete choice experiment ,Likert scale ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Quality of life (healthcare) ,Rating scale ,Psoriasis ,medicine ,skin and connective tissue diseases ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,preferences ,Social functioning ,Original Research ,business.industry ,030503 health policy & services ,Health Policy ,medicine.disease ,Patient Benefit Index ,Conjoint analysis ,Ranking ,Patient Preference and Adherence ,patient-reported outcomes ,conjoint analysis ,0305 other medical science ,business ,Social Sciences (miscellaneous) ,Clinical psychology - Abstract
Mandy Gutknecht,1 Marthe-Lisa Schaarschmidt,1,2 Marion Danner,3 Christine Blome,1 Matthias Augustin1 1German Center for Health Services Research in Dermatology (CVderm), Institute for Health Services Research in Dermatology and Nursing (IVDP), University Medical Center Hamburg-Eppendorf (UKE), Hamburg, Germany; 2Department of Dermatology, University Medical Center Mannheim, Heidelberg University, Mannheim, Germany; 3Institute for Health Economics and Clinical Epidemiology (IGKE), University Hospital of Cologne, Cologne, Germany Background: Psoriasis affects different aspects of health-related quality of life (eg, physical, psychological, and social impairments); these health domains can be of different importance for patients. The importance of domains can be measured with the Patient Benefit Index (PBI). This questionnaire weights the achievement of treatment goals by Likert scales (0, “not important at all” to 4, “very important”) using the Patient Needs Questionnaire (PNQ). Treatment goals assessed with the PBI have been assigned to five health domains; the importance of each domain can be calculated as the average importance of the respective treatment goals. In this study, the PBI approach of deriving importance weights is contrasted to a discrete choice experiment (DCE), in order to determine the importance of health domains in psoriasis, and to find if the resulting weights will differ when derived from these two methods.Methods: Adult patients with psoriasis completed both questionnaires (PNQ, DCE). The PBI domains were used as attributes in the DCE with the levels “did not help at all”, “helped moderately”, and “helped a lot”.Results: Using DCE, “improving physical functioning” was the most important health domain, followed by “improving psychological well-being”. Using PNQ, these domains were ranked in position two and three following “strengthening confidence in the therapy and in a possible healing”. The latter was least important using DCE. The only agreement of ranking was shown in “reducing impairments due to therapy” (position four). “Improving social functioning” was ranked in position three (DCE) and five (PNQ).Conclusion: Health domains have different importance to patients with psoriasis. Using PNQ or DCE to determine the importance of domains results in markedly different rankings; both approaches can thus not be considered equivalent. However, in this study, importance was assessed at the domain level in DCE and at the single item level in PNQ, which may have added to the differences. Keywords: conjoint analysis, Patient Benefit Index, patient-reported outcomes, preferences
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- 2018
35. Assessing the Importance of Treatment Goals in Patients with Psoriasis: Analytic Hierarchy Process vs. Likert Scales
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Marthe-Lisa Schaarschmidt, Christian Gross, M. Gutknecht, Matthias Augustin, and Marion Danner
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Adult ,Male ,Applied psychology ,Analytic hierarchy process ,Pain ,Likert scale ,Decision Support Techniques ,03 medical and health sciences ,Interpersonal relationship ,Young Adult ,0302 clinical medicine ,Germany ,Surveys and Questionnaires ,Outpatient clinic ,Humans ,Psoriasis ,Interpersonal Relations ,030212 general & internal medicine ,Aged ,Self-efficacy ,Hierarchy ,030503 health policy & services ,Pruritus ,Health services research ,Middle Aged ,Self Efficacy ,Patient Outcome Assessment ,Quality of Life ,Pairwise comparison ,Female ,0305 other medical science ,Psychology ,Goals ,Stress, Psychological - Abstract
To define treatment benefit, the Patient Benefit Index contains a weighting of patient-relevant treatment goals using the Patient Needs Questionnaire, which includes a 5-point Likert scale ranging from 0 (“not important at all”) to 4 (“very important”). These treatment goals have been assigned to five health dimensions. The importance of each dimension can be derived by averaging the importance ratings on the Likert scales of associated treatment goals. As the use of a Likert scale does not allow for a relative assessment of importance, the objective of this study was to estimate relative importance weights for health dimensions and associated treatment goals in patients with psoriasis by using the analytic hierarchy process and to compare these weights with the weights resulting from the Patient Needs Questionnaire. Furthermore, patients’ judgments on the difficulty of the methods were investigated. Dimensions of the Patient Benefit Index and their treatment goals were mapped into a hierarchy of criteria and sub-criteria to develop the analytic hierarchy process questionnaire. Adult patients with psoriasis starting a new anti-psoriatic therapy in the outpatient clinic of the Institute for Health Services Research in Dermatology and Nursing at the University Medical Center Hamburg (Germany) were recruited and completed both methods (analytic hierarchy process, Patient Needs Questionnaire). Ratings of treatment goals on the Likert scales (Patient Needs Questionnaire) were summarized within each dimension to assess the importance of the respective health dimension/criterion. Following the analytic hierarchy process approach, consistency in judgments was assessed using a standardized measurement (consistency ratio). At the analytic hierarchy process level of criteria, 78 of 140 patients achieved the accepted consistency. Using the analytic hierarchy process, the dimension “improvement of physical functioning” was most important, followed by “improvement of social functioning”. Concerning the Patient Needs Questionnaire results, these dimensions were ranked in second and fifth position, whereas “strengthening of confidence in the therapy and in a possible healing” was ranked most important, which was least important in the analytic hierarchy process ranking. In both methods, “improvement of psychological well-being” and “reduction of impairments due to therapy” were equally ranked in positions three and four. In contrast to this, on the level of sub-criteria, predominantly a similar ranking of treatment goals could be observed between the analytic hierarchy process and the Patient Needs Questionnaire. From the patients’ point of view, the Likert scales (Patient Needs Questionnaire) were easier to complete than the analytic hierarchy process pairwise comparisons. Patients with psoriasis assign different importance to health dimensions and associated treatment goals. In choosing a method to assess the importance of health dimensions and/or treatment goals, it needs to be considered that resulting importance weights may differ in dependence on the used method. However, in this study, observed discrepancies in importance weights of the health dimensions were most likely caused by the different methodological approaches focusing on treatment goals to assess the importance of health dimensions on the one hand (Patient Needs Questionnaire) or directly assessing health dimensions on the other hand (analytic hierarchy process).
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- 2018
36. How to weight patient-relevant treatment goals for assessing treatment benefit in psoriasis: preference elicitation methods vs. rating scales
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Marthe-Lisa Schaarschmidt, M. Gutknecht, Marina Otten, Marion Danner, and Matthias Augustin
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Adult ,Male ,Clinical Decision-Making ,Analytic hierarchy process ,Dermatology ,Treatment goals ,Medication Adherence ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Rating scale ,Psoriasis ,Patient-Centered Care ,Surveys and Questionnaires ,medicine ,Humans ,Preference elicitation ,030212 general & internal medicine ,Aged ,030503 health policy & services ,Contrast (statistics) ,Patient Preference ,General Medicine ,Middle Aged ,medicine.disease ,Preference ,Weighting ,Treatment Outcome ,Quality of Life ,Female ,0305 other medical science ,Psychology ,Clinical psychology - Abstract
In psoriasis, several patient-relevant treatment goals must be met to be able to consider a treatment beneficial. To assess treatment benefit, the validated questionnaire Patient Benefit Index (PBI) can be used. Its global score summarizes the degree of patient-relevant treatment goals achieved after treatment, weighted by their individual importance on rating scales. These treatment goals have empirically been assigned to five dimensions. While the weighting procedure of the PBI provides information about the importance patients attach to treatment goals on a rating scale from 0 to 4, methods of preference elicitation provide information on how patients would trade off certain treatment goals against each other. However, since the treatment goals defined in the PBI often overlap conceptually, the dimensions of the PBI might be more suitable for exploration in preference elicitation methods. We used an analytic hierarchy process (AHP) and a discrete choice experiment (DCE) to generate preference-based importance weights for the PBI dimensions, and compared these weights to those derived from the rating scales. We were further interested in the effect of importance weights on the calculation of the PBI score. A total of 120 patients with psoriasis completed a questionnaire at baseline, including AHP, DCE and the rating scales, and at follow-up, regarding the attainment of treatment goals, to calculate the PBI score. In contrast to the results derived from the average rating scores, use of AHP and DCE resulted in both similar importance weights and rankings of dimensions. Presumably, patients rated treatment goals differently than the respective dimension they belong to. However, the differently calculated importance weights led to similar values of the PBI score. Our findings nevertheless provide clear evidence that, regardless of the method used, the importance of treatment goals differs between psoriasis patients, and this should be reflected in treatment decisions.
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- 2018
37. Disease Burden, Psychological Well-Being and Attitudes regarding the Set of Emergency Medication in Adults with Insect Venom Allergy
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M. Gutknecht, Lisa Schoeben, Astrid Schmieder, and Marthe-Lisa Schaarschmidt
- Subjects
Adult ,Male ,medicine.medical_specialty ,Immunology ,Wasp Venoms ,Anxiety ,Hospital Anxiety and Depression Scale ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Quality of life ,Willingness to pay ,Cost of Illness ,medicine ,Hypersensitivity ,Immunology and Allergy ,Humans ,Depression (differential diagnoses) ,Disease burden ,Aged ,business.industry ,Depression ,Insect Bites and Stings ,General Medicine ,Middle Aged ,030228 respiratory system ,Family medicine ,Psychological well-being ,Cohort ,Patient Compliance ,Female ,medicine.symptom ,Emergencies ,business ,Attitude to Health - Abstract
Background: Insect venom allergy is common and greatly impairs patients’ quality of life. Additionally, low compliance with carrying emergency medication is reported. The aim of our study was to analyze the disease burden, levels of anxiety and depression, and to evaluate attitudes towards the set of emergency medication in affected patients. Methods: Between April 2016 and January 2017, patients ≥18 years visiting our department because of an insect venom allergy were asked to complete a paper-based questionnaire. The questionnaire assessed willingness to pay (WTP), the Hospital Anxiety and Depression Scale (HADS), subjective anxiety levels, willingness to carry the set of emergency medication, self-assurance in using it, compliance with carrying it, and reasons for not always carrying it. Results: 55 patients (81.8% wasp allergy) were included. On average, WTP for a complete cure was EUR 1,727 (median: 500). Using the HADS, 14.5% showed definite anxiety disorders while 5.5% had significant depression disorders. Most patients stated to carry the emergency medication “always” (25.5%) or “almost always” (47.3%). “Forgetfulness” (36.4%) was reported as the main reason for not always carrying the medication, followed by “too big” (18.2%). Conclusions: In our patient cohort, insect venom allergy was associated with a moderate disease burden and a good compliance with carrying the emergency medication. However, several of our participants demonstrated borderline or significant anxiety and/or depression disorders. In this regard, this study highlights the necessity to regularly ask the patient about the psychological well-being to identify patients needing psychological support.
- Published
- 2018
38. Long-Term Outcomes of Distal Femoral Extension Osteotomy and Patellar Tendon Advancement in Individuals with Cerebral Palsy
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Tom F. Novacheck, Michael H. Schwartz, Jean L. Stout, Sarah M Gutknecht, Meghan E. Munger, Elizabeth R. Boyer, Jennifer C. Laine, and Lucas H Araujo de Oliveira
- Subjects
Adult ,Male ,medicine.medical_specialty ,Adolescent ,medicine.medical_treatment ,Osteoarthritis ,Osteotomy ,Cerebral palsy ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Interquartile range ,Patellar Ligament ,medicine ,Humans ,Orthopedics and Sports Medicine ,Range of Motion, Articular ,Child ,Gait ,Gait Disorders, Neurologic ,Retrospective Studies ,030222 orthopedics ,business.industry ,Cerebral Palsy ,Knee flexion contracture ,Femur Head ,General Medicine ,medicine.disease ,Knee pain ,Gait analysis ,Physical therapy ,Quality of Life ,Surgery ,Female ,medicine.symptom ,Range of motion ,business ,030217 neurology & neurosurgery - Abstract
Background We examined long-term outcomes across the domains of the International Classification of Functioning, Disability and Health for 2 groups of participants with cerebral palsy who demonstrated crouch gait at clinical gait analysis. One group underwent a distal femoral extension osteotomy with patellar tendon advancement (DFEO + PTA). The other group received other treatments (non-DFEO + PTA). Methods Fifty-one participants returned for a long-term gait analysis, physical examination, energy consumption test, knee radiographs, and questionnaires (median, 13 years post-DFEO + PTA or post-baseline [range, 8 to 21 years]). A subset of participants in the DFEO + PTA group also had a short-term analysis (9 to 24 months postoperatively). Results Participants were reasonably well-matched at baseline, although the DFEO + PTA group demonstrated greater crouch: minimum knee flexion, a median of 37° (width of the interquartile range, 12°) compared with 27° (9°); and knee flexion contracture, a median of 15° (10°) compared with 10° (5°). The gait deviation index (GDI) and sagittal plane knee kinematics were most improved at short term for the DFEO + PTA participants, with a subsequent slight decline at long-term analysis. Fewer DFEO + PTA participants were in crouch at long term (37% compared with 65%). At the long-term assessment, group scores for function, mobility, participation, quality of life, and most pain questionnaires were similar. Knee pain and osteoarthritis ratings did not differ between the groups. Conclusions At long-term analysis, DFEO + PTA improves stance phase knee extension and knee flexion contracture compared with conventional treatment, but these benefits do not translate to improved activity, participation, or knee pain in early adulthood. Level of evidence Therapeutic Level III. See Instructions for Authors for a complete description of levels of evidence.
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- 2018
39. Health-related quality of life and patient burden in patients with split-thickness skin graft donor site wounds
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David Lohrberg, Bernd Hartmann, Joachim Dissemond, Matthias Augustin, Lisa Goepel, Marco Humrich, Marco Blessmann, Guido Bruning, Holger Diener, and M. Gutknecht
- Subjects
Adult ,Male ,medicine.medical_specialty ,medicine.medical_treatment ,Medizin ,Physical examination ,Dermatology ,Transplant Donor Site ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Quality of life ,Split thickness skin graft ,Germany ,medicine ,Humans ,Surgical Wound Infection ,In patient ,Aged ,Health related quality of life ,Wound Healing ,Adult patients ,medicine.diagnostic_test ,integumentary system ,business.industry ,030208 emergency & critical care medicine ,Original Articles ,Skin Transplantation ,Middle Aged ,Surgery ,Patient burden ,Cross-Sectional Studies ,Chronic Disease ,Quality of Life ,Skin grafting ,Female ,business - Abstract
Split-thickness skin grafting is a common procedure to treat different kinds of wounds. This systematic, multicentre, observational, cross-sectional study of adult patients with split-thickness skin graft (STSG) donor site wounds was conducted to evaluate quality of life (QoL) impairments caused by donor site wounds following split-thickness skin grafting. Therefore, 112 patients from 12 wound centres in Germany were examined based on patient and physician questionnaires as well as a physical examination of the donor site wound. Most indications for skin grafting were postsurgical treatment (n = 51; 42.5%) and chronic wounds (n = 47; 39.2%). European QoL visual analoque scale (EQ VAS) averaged 64.7 ± 23.3, European QoL 5 dimensions (EQ-5D) averaged 77.4 ± 30.0. Wound-QoL (range: 0-4) was rated 0.8 ± 0.8 post-surgery and 0.4 ± 0.6 at the time of survey (on average 21 weeks between the time points). Compared to averaged Wound-QoL scores of chronic wounds donor site-related QoL impairments in split-thickness skin-graft patients were less pronounced. There were significant differences in patient burden immediately after surgery compared to the time of the survey, with medium effect sizes. This supports the hypothesis that faster healing of the donor site wound leads to more favourable patient-reported outcomes.
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- 2018
40. Impacts of species richness on productivity in a large-scale subtropical forest experiment
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Martin Baruffol, Tesfaye Wubet, Jingyun Fang, Liang-Dong Guo, Andreas Schuldt, Goddert von Oheimb, Thomas Scholten, Zhengwen Wang, Walter Durka, Jessica L. M. Gutknecht, Bing Yang Ding, Ying Li, Werner Härdtle, Jürgen Bauhus, Zhiyao Tang, David Eichenberg, Karsten Schmidt, Erik Welk, Helge Bruelheide, Wenhua Xiang, Kequan Pei, Jintang He, Hong-Zhang Zhou, Xiao-Yong Chen, Chao-Dong Zhu, Pascal A. Niklaus, Thorsten Behrens, Stefan Trogisch, Dali Guo, Alexandra-Maria Klein, Yuanyuan Huang, Nadia Castro-Izaguirre, Keping Ma, Shan Li, Caiyun He, Shouren Zhang, Ren Yong Hu, Yuxin Chen, Bo Yang, Stefan G. Michalski, Douglas Chesters, Markus Fischer, Anne C. Lang, Christian Wirth, Xin Yu, Xiaojuan Liu, Yu Liang, Sabine Both, Li Zhu, François Buscot, Xuefei Yang, Xuezheng Shi, Naili Zhang, Thorsten Assmann, Bernhard Schmid, Lydia Hönig, Peter Kühn, Alexandra Erfmeier, Andy Hector, Jiayong Zhang, Minjia Tan, Matteo Brezzi, Michael Scherer-Lorenzen, and Mingjian Yu
- Subjects
0106 biological sciences ,Multidisciplinary ,Extinction ,010504 meteorology & atmospheric sciences ,ved/biology ,Ecology ,ved/biology.organism_classification_rank.species ,Biodiversity ,food and beverages ,580 Plants (Botany) ,Sustainability Science ,010603 evolutionary biology ,01 natural sciences ,Shrub ,Productivity (ecology) ,Afforestation ,Environmental science ,Ecosystem ,Species richness ,Tropical and subtropical moist broadleaf forests ,0105 earth and related environmental sciences - Abstract
Tree diversity improves forest productivity Experimental studies in grasslands have shown that the loss of species has negative consequences for ecosystem functioning. Is the same true for forests? Huang et al. report the first results from a large biodiversity experiment in a subtropical forest in China. The study combines many replicates, realistic tree densities, and large plot sizes with a wide range of species richness levels. After 8 years of the experiment, the findings suggest strong positive effects of tree diversity on forest productivity and carbon accumulation. Thus, changing from monocultures to more mixed forests could benefit both restoration of biodiversity and mitigation of climate change. Science , this issue p. 80
- Published
- 2018
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41. Patients' and Physicians' Preferences for Systemic Psoriasis Treatments: A Nationwide Comparative Discrete Choice Experiment (PsoCompare)
- Author
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Wiebke K. Peitsch, Michael Sticherling, M. Gutknecht, Matthias Augustin, Raphael M. Herr, Katharina Wroblewska, Sascha Gerdes, and Marthe-Lisa Schaarschmidt
- Subjects
Adult ,Male ,medicine.medical_specialty ,Health Knowledge, Attitudes, Practice ,Time Factors ,Attitude of Health Personnel ,discretechoiceexperiment ,Clinical Decision-Making ,MEDLINE ,Dermatology ,Risk Assessment ,Severity of Illness Index ,Drug Costs ,030207 dermatology & venereal diseases ,03 medical and health sciences ,Patient safety ,0302 clinical medicine ,Psoriasis Area and Severity Index ,Psoriasis ,Germany ,Severity of illness ,lcsh:Dermatology ,Medicine ,Humans ,Medical prescription ,Practice Patterns, Physicians' ,Adverse effect ,preferences ,Aged ,systemictreatment ,business.industry ,Age Factors ,conjointanalysis ,Patient Preference ,General Medicine ,lcsh:RL1-803 ,Middle Aged ,medicine.disease ,Surgery ,Treatment Outcome ,biologicals ,030220 oncology & carcinogenesis ,Emergency medicine ,Female ,Dermatologic Agents ,Patient Safety ,Risk assessment ,business - Abstract
Systemic antipsoriatic treatment options are increasing rapidly. The aim of this nationwide discrete choice experiment was to compare patients’ (n = 222) and physicians’ (n = 78) preferences for outcome and process attributes of systemic antipsoriatics using Relative Importance Scores (RIS). Both groups considered Psoriasis Area and Severity Index 90 (PASI 90) to be most important (RIS 21.4 and 20.8, respectively). Moreover, patients were highly concerned about mild and severe adverse events (RIS = 18.2 and 14.2), physicians about severe adverse events (RIS = 14.9) and cost (RIS = 13.8). Compared to physicians, patients worried more about mild adverse events and treatment location, but less about cost and frequency of laboratory tests. Physicians’ preferences were influenced by work experience and percentage of biological prescriptions, patients’ preferences by age, disease duration and severity. Older and less severely affected patients recruited via a patient organization focused more on safety, but less on efficacy and time until response than did patients from study centres. In conclusion, these differences in trade-offs should be integrated into a shared decision-making.
- Published
- 2017
42. Towards a methodical framework for comprehensively assessing forest multifunctionality
- Author
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Walter Durka, Bernhard Schmid, Pascal A. Niklaus, Philipp Goebes, David Eichenberg, Yuanyuan Huang, Lydia Hönig, Jürgen Bauhus, Sabine Both, Karsten Schmidt, Jin-Sheng He, Nadia Castro-Izaguirre, François Buscot, Christian Wirth, Andreas Schuldt, Christina Weißbecker, Ricarda Prinz, Thomas Scholten, Markus Fischer, Bo Yang, Erik Welk, Katherina A. Pietsch, Ying Li, Xuefei Yang, Christian Geißler, Werner Härdtle, Jessica L. M. Gutknecht, Douglas Chesters, Goddert von Oheimb, Helge Bruelheide, Stefan Trogisch, Christoph Z. Hahn, Tobias Proß, Sylvia Haider, Matthias Kunz, Zhengshan Song, Peter Kühn, Alexandra Erfmeier, Andy Hector, Michael Scherer-Lorenzen, Steffen Seitz, Katrin N. Leppert, Tesfaye Wubet, Alexandra-Maria Klein, Juliet A. Blum, Keping Ma, Michael Staab, Xiaojuan Liu, Chao-Dong Zhu, and Zhiqin Pei
- Subjects
0106 biological sciences ,Biodiversity ,multitrophic interactions ,forest biodiversity experiments ,580 Plants (Botany) ,Biology ,BEF-China ,010603 evolutionary biology ,01 natural sciences ,Plot (graphics) ,high-throughput methods ,Forest ecology ,Ecosystem ,BEF‐China ,Ecology, Evolution, Behavior and Systematics ,Original Research ,Nature and Landscape Conservation ,standardized protocols ,Ecology ,Scope (project management) ,business.industry ,Scale (chemistry) ,Comparability ,Environmental resource management ,04 agricultural and veterinary sciences ,Variable (computer science) ,Ecosystems Research ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,business ,high‐throughput methods - Abstract
Biodiversity-ecosystem functioning (BEF) research has extended its scope from communities that are short-lived or reshape their structure annually to structurally complex forest ecosystems. The establishment of tree diversity experiments poses specific methodological challenges for assessing the multiple functions provided by forest ecosystems. In particular, methodological inconsistencies and nonstandardized protocols impede the analysis of multifunctionality within, and comparability across the increasing number of tree diversity experiments. By providing an overview on key methods currently applied in one of the largest forest biodiversity experiments, we show how methods differing in scale and simplicity can be combined to retrieve consistent data allowing novel insights into forest ecosystem functioning. Furthermore, we discuss and develop recommendations for the integration and transferability of diverse methodical approaches to present and future forest biodiversity experiments. We identified four principles that should guide basic decisions concerning method selection for tree diversity experiments and forest BEF research: (1) method selection should be directed toward maximizing data density to increase the number of measured variables in each plot. (2) Methods should cover all relevant scales of the experiment to consider scale dependencies of biodiversity effects. (3) The same variable should be evaluated with the same method across space and time for adequate larger-scale and longer-time data analysis and to reduce errors due to changing measurement protocols. (4) Standardized, practical and rapid methods for assessing biodiversity and ecosystem functions should be promoted to increase comparability among forest BEF experiments. We demonstrate that currently available methods provide us with a sophisticated toolbox to improve a synergistic understanding of forest multifunctionality. However, these methods require further adjustment to the specific requirements of structurally complex and long-lived forest ecosystems. By applying methods connecting relevant scales, trophic levels, and above- and belowground ecosystem compartments, knowledge gain from large tree diversity experiments can be optimized. Biodiversity–ecosystem functioning (BEF) research has extended its scope from communities that are short‐lived or reshape their structure annually to structurally complex forest ecosystems. The establishment of tree diversity experiments poses specific methodological challenges for assessing the multiple functions provided by forest ecosystems. In particular, methodological inconsistencies and nonstandardized protocols impede the analysis of multifunctionality within, and comparability across the increasing number of tree diversity experiments. By providing an overview on key methods currently applied in one of the largest forest biodiversity experiments, we show how methods differing in scale and simplicity can be combined to retrieve consistent data allowing novel insights into forest ecosystem functioning. Furthermore, we discuss and develop recommendations for the integration and transferability of diverse methodical approaches to present and future forest biodiversity experiments. We identified four principles that should guide basic decisions concerning method selection for tree diversity experiments and forest BEF research: (1) method selection should be directed toward maximizing data density to increase the number of measured variables in each plot. (2) Methods should cover all relevant scales of the experiment to consider scale dependencies of biodiversity effects. (3) The same variable should be evaluated with the same method across space and time for adequate larger‐scale and longer‐time data analysis and to reduce errors due to changing measurement protocols. (4) Standardized, practical and rapid methods for assessing biodiversity and ecosystem functions should be promoted to increase comparability among forest BEF experiments. We demonstrate that currently available methods provide us with a sophisticated toolbox to improve a synergistic understanding of forest multifunctionality. However, these methods require further adjustment to the specific requirements of structurally complex and long‐lived forest ecosystems. By applying methods connecting relevant scales, trophic levels, and above‐ and belowground ecosystem compartments, knowledge gain from large tree diversity experiments can be optimized.
- Published
- 2017
43. Precipitation modifies the effects of warming and nitrogen addition on soil microbial communities in northern Chinese grasslands
- Author
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Zhen Wang, Jixun Guo, Liang Yu, Keping Ma, Weixing Liu, Bernhard Schmid, Naili Zhang, Jie Bi, Jessica L. M. Gutknecht, Shiqiang Wan, Guodong Han, University of Zurich, and Ma, Keping
- Subjects
Limiting factor ,geography ,geography.geographical_feature_category ,Ecology ,Steppe ,Field experiment ,2404 Microbiology ,Soil Science ,Context (language use) ,Global change ,Microbiology ,10127 Institute of Evolutionary Biology and Environmental Studies ,Agronomy ,Temperate climate ,570 Life sciences ,biology ,590 Animals (Zoology) ,Environmental science ,Terrestrial ecosystem ,Precipitation ,1111 Soil Science - Abstract
Terrestrial ecosystems experience simultaneous shifts in multiple drivers of global change, which can interactively affect various resources. The concept that different resources co-limit plant productivity has been well studied. However, co-limitation of soil microbial communities by multiple resources has not been as thoroughly investigated. Specifically, it is not clearly understood how microbial communities respond to shifts in multiple interacting resources such as water, temperature, and nitrogen (N), in the context of global change. To test the effects of these various resources on soil microorganisms, we established a field experiment with temperature and N manipulation in three grasslands of northern China, where there is a decrease in precipitation from east to west across the region. We found that microbial responses to temperature depended upon seasonal water regimes in these temperate steppes. When there was sufficient water present, warming had positive effects on soil microorganisms, suggesting an interaction between water and increases in temperature enhanced local microbial communities. When drought or alternating wet–dry stress occurred, warming had detrimental effects on soil microbial communities. Our results also provide clear evidence for serial co-limitation of microorganisms by water and N at the functional group and community levels, where water is a primary limiting factor and N addition positively affects soil microorganisms only when water is sufficient. We predict that future microbial responses to changes in temperature and N availability could be seasonal or exist only in non-drought years, and will strongly rely on future precipitation regimes.
- Published
- 2015
44. Carbon input and crop-related changes in microbial biomarker levels strongly affect the turnover and composition of soil organic carbon
- Author
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Jana Schmidt, Jessica L. M. Gutknecht, Beate Michalzik, Franҫois Buscot, and Elke Schulz
- Subjects
chemistry.chemical_classification ,Soil organic matter ,Soil Science ,chemistry.chemical_element ,Carbon sink ,Soil carbon ,Bacterial growth ,engineering.material ,Carbon sequestration ,Microbiology ,Nitrogen ,chemistry ,Agronomy ,engineering ,Monosaccharide ,Fertilizer - Abstract
It is increasingly recognized that a detailed understanding of the impacts of land use on soil carbon pools and microbially mediated carbon dynamics is required in order to accurately describe terrestrial carbon budgets and improve soil carbon retention. Toward this understanding, we analyzed the levels of biomarkers including phospholipid fatty acids, amino acids, monosaccharides, amino sugars, and several indicators of labile and stabilized carbon in soil samples from a long-term agricultural field experiment. Our results imply that the composition of soil organic carbon (SOC) strongly depends on both the applied fertilization regime and the cultivated crop. In addition, our approach allowed us to identify possible mechanisms of microbial growth and contributions to soil carbon storage under different long-term agricultural management regimes. Amino acids and monosaccharides were quantitatively the most dominant biomarkers and their levels correlated strongly positively with microbial biomass. The relative contributions of the studied biomarkers to the total SOC varied only slightly among the treatments except in cases of extreme fertilization and without any fertilizer. In case of extreme fertilization and with alfalfa as crop type, we found evidence for accumulation of microbially derived monosaccharides and amino acids within the labile OC pool, probably resulting from soil C saturation. Interestingly, we also found an accumulation of microbially derived monosaccharides and amino acids in completely unfertilized plots, which we assumed to be caused by the smaller pore space volume and subsequent oxygen limitation for microbial growth. Mineral fertilization also had substantial effects on soil organic N when applied to plots containing alfalfa, a leguminous plant. Our results demonstrate that over-fertilization, fertilizer type, and the cultivated crop type can have major impacts on the turnover and composition of soil organic carbon, and should be considered when assessing management effects on soil C dynamics.
- Published
- 2015
45. Nest-mounds of the yellow meadow ant (Lasius flavus) at the 'Alter Gleisberg', Central Germany: Hot or cold spots in nutrient cycling?
- Author
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Beate Michalzik, Jessica L. M. Gutknecht, and Peggy Bierbaß
- Subjects
Nutrient cycle ,biology ,Soil organic matter ,Lasius ,fungi ,food and beverages ,Soil Science ,Soil chemistry ,biology.organism_classification ,complex mixtures ,Microbiology ,Nutrient ,Agronomy ,Soil water ,Environmental science ,Soil fertility ,Cycling - Abstract
Nests of the yellow meadow ant ( Lasius flavus ) occur at high densities in grasslands worldwide. Although many studies have shown that L . flavus nests influence soil nutrient contents, little is known about their effect on soil nutrient cycling rates. The aim of this study was to examine the role of nest-mounds inhabited by L. flavus as potential ‘hot spots’ for soil nutrient cycling. Six pairs of nest-mounds and control soils were selected at a grassland site at the plateau of the Alter Gleisberg (Thuringia, Central Germany). L. flavus significantly modified the soil environment within the nest. In comparison to the control soils, nest-mounds were characterized by slightly higher soil temperatures during the summer months. In addition, we found that nests were related to decreased potential C mineralization rates and increased potential net N mineralization rates. Nest-mound soil exhibited lower amounts of SOC, hot-water extractable DOC and DN, and higher concentrations of leachable DOC and DN. Moreover, ants promoted the enrichment of base cations in the nest. Differences in the soil environment between nests and control soils were possibly a result of the burrowing activity of ants, soil mixing, accumulation of aphid honeydew, and decreased plant-derived nutrient inputs into the nest-mound soil. In conclusion, L. flavus nest-mounds had a significant but element dependent effect on the soil nutrient cycling and may represent cold spots for C cycling and hot spots for N cycling. Thus, L. flavus nests increase the spatial heterogeneity of soil properties and create unique micro-sites within grassland ecosystems.
- Published
- 2015
46. Strong positive biodiversity–productivity relationships in a subtropical forest experiment
- Author
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Stefan Trogisch, Anne C. Lang, David Eichenberg, Keping Ma, Li Zhu, François Buscot, Stefan G. Michalski, Shouren Zhang, Markus Fischer, Matteo Brezzi, Wenhua Xiang, Douglas Chesters, Erik Welk, Naili Zhang, Thorsten Assmann, Bernhard Schmid, Kequan Pei, Nadia Castro-Izaguirre, Xiao-Yong Chen, Jürgen Bauhus, Alexandra-Maria Klein, Lydia Hönig, Peter Kühn, Alexandra Erfmeier, Bo Yang, Hong-Zhang Zhou, Yuxin Chen, Andy Hector, Jiayong Zhang, Chao-Dong Zhu, Caiyun He, Ren Yong Hu, Zhengwen Wang, Yu Liang, Sabine Both, Tesfaye Wubet, Xiaojuan Liu, Jessica L. M. Gutknecht, Xuefei Yang, Xuezheng Shi, Thorsten Behrens, Jingyun Fang, Liang-Dong Guo, Bing Yang Ding, Walter Durka, Christian Wirth, Xin Yu, Andreas Schuldt, Zhiyao Tang, Martin Baruffol, Pascal A. Niklaus, Yuanyuan Huang, Ying Li, Werner Härdtle, Helge Bruelheide, Thomas Scholten, Minjia Tan, Michael Scherer-Lorenzen, Goddert von Oheimb, Mingjian Yu, Karsten Schmidt, Jintang He, Dali Guo, and Yan J
- Subjects
0106 biological sciences ,ved/biology ,Ecology ,Agroforestry ,010604 marine biology & hydrobiology ,ved/biology.organism_classification_rank.species ,Biodiversity ,15. Life on land ,Biology ,010603 evolutionary biology ,01 natural sciences ,Shrub ,Basal area ,Forest ecology ,Afforestation ,Ecosystem ,Species richness ,Tropical and subtropical moist broadleaf forests - Abstract
Forest ecosystems contribute substantially to global terrestrial primary productivity and climate regulation, but, in contrast to grasslands, experimental evidence for a positive biodiversity-productivity relationship in highly diverse forests is still lacking1. Here, we provide such evidence from a large forest biodiversity experiment with a novel design2 in subtropical China. Productivity (stand-level tree basal area, aboveground volume and carbon and their annual increment) increased linearly with the logarithm of tree species richness. Additive partitioning3 showed that increasing positive complementarity effects combined with weakening negative selection effects caused a strengthening of the relationship over time. In 2-species mixed stands, complementary effects increased with functional distance and selection effects with vertical crown dissimilarity between species. Understorey shrubs reduced stand-level tree productivity, but this effect of competition was attenuated by shrub species richness, indicating that a diverse understorey may facilitate overall ecosystem functioning. Identical biodiversity-productivity relationships were found in plots of different size, suggesting that extrapolation to larger scales is possible. Our results highlight the potential of multi-species afforestation strategies to simultaneously contribute to mitigation of climate change and biodiversity restoration.
- Published
- 2017
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47. A Lipid Extraction and Analysis Method for Characterizing Soil Microbes in Experiments with Many Samples
- Author
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Harry W. Read, Randall D. Jackson, Lawrence G. Oates, Jessica L. M. Gutknecht, David S. Duncan, and Teri B. Balser
- Subjects
0301 basic medicine ,Soil test ,General Chemical Engineering ,Microorganism ,030106 microbiology ,Biology ,ordination ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,chemistry.chemical_compound ,Soil ,Phospholipid Fatty Acid (PLFA) ,Organic matter ,Ecosystem ,bacteria ,Fatty acid methyl ester ,chemistry.chemical_classification ,General Immunology and Microbiology ,General Neuroscience ,Fatty Acids ,soil microbiology ,Microbial population biology ,Biochemistry ,chemistry ,Issue 125 ,Environmental chemistry ,Soil water ,lipids (amino acids, peptides, and proteins) ,fungi ,microbial community ,Fatty Acid Methyl Ester (FAME) ,Soil microbiology ,MIDI-FA ,lipid biomarker ,Environmental Sciences - Abstract
Microbial communities are important drivers and regulators of ecosystem processes. To understand how management of ecosystems may affect microbial communities, a relatively precise but effort-intensive technique to assay microbial community composition is phospholipid fatty acid (PLFA) analysis. PLFA was developed to analyze phospholipid biomarkers, which can be used as indicators of microbial biomass and the composition of broad functional groups of fungi and bacteria. It has commonly been used to compare soils under alternative plant communities, ecology, and management regimes. The PLFA method has been shown to be sensitive to detecting shifts in microbial community composition. An alternative method, fatty acid methyl ester extraction and analysis (MIDI-FA) was developed for rapid extraction of total lipids, without separation of the phospholipid fraction, from pure cultures as a microbial identification technique. This method is rapid but is less suited for soil samples because it lacks an initial step separating soil particles and begins instead with a saponification reaction that likely produces artifacts from the background organic matter in the soil. This article describes a method that increases throughput while balancing effort and accuracy for extraction of lipids from the cell membranes of microorganisms for use in characterizing both total lipids and the relative abundance of indicator lipids to determine soil microbial community structure in studies with many samples. The method combines the accuracy achieved through PLFA profiling by extracting and concentrating soil lipids as a first step, and a reduction in effort by saponifying the organic material extracted and processing with the MIDI-FA method as a second step.
- Published
- 2017
48. P08.30 CMV infection influences paracrine interactions in the glioblastoma microenvironment and amplifies the angiogenic phenotype
- Author
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M. Gutknecht, P. Behara, Antonio Chiocca, Korneel Grauwet, Sean E. Lawler, Harald Krenzlin, Charles H. Cook, and M. Griessl
- Subjects
Cancer Research ,medicine.diagnostic_test ,Angiogenesis ,medicine.medical_treatment ,Transforming growth factor beta ,Biology ,medicine.disease ,Phenotype ,Flow cytometry ,Paracrine signalling ,Cytokine ,Oncology ,Cell culture ,Immunology ,medicine ,biology.protein ,Cancer research ,Neurology (clinical) ,POSTER PRESENTATIONS ,Glioblastoma - Abstract
Objective: Cytomegalovirus (CMV) is a ubiquitous member of the herpes virus family with a prevalence of between 50-100% in the human population and lifelong persistence. While usually clinically benign, severe cases are observed in neonates and immunocompromised patients. CMV has been associated with various tumors, including glioblastoma (GBM). The aim of this study is to clarify the interrelationship between CMV and GBM, as to elucidate its contribution to GBM progression. Methods: Pericytes, proneural (PN) and mesenchymal (MES) human GBM cell lines were assessed via flow cytometry for permissiveness to CMV (Towne Strain) infection. The transcriptome of infected cells was assessed using RT-qPCR and RNA-Seq analysis. Transwell migration and endothelial tube formation were evaluated in co-culture experiments. C57BL/6 mice were infected with murine CMV (MCMV-Δm157) at P2 and syngeneic GL261 tumor cells were implanted at week 14 after latency was established. Tumor composition was analyzed using flow cytometry. Murine and human brain sections were analyzed by immunofluorescence staining. Results: CMV was found to closely co-localize with tumor vessels in patient derived GBM specimens. In vitro studies confirmed a high permissiveness of pericytes for CMV infection. GBM cells, permissive for CMV infection had a proneural, rather than a mesenchymal signature. The transcription of pro-angiogenic cytokines such as IL-6, TGF-beta and angiogenesis inducing receptor PAR-1 were up-regulated upon CMV infection. Transwell assays revealed increased migration towards CMV infected cells after 48h (GBM cells towards infected pericytes: 1.5-fold (p=0.07); pericytes towards infected GBM cells: 1.48-fold (p=0.009)). Further, co-culture of human brain microvascular endothelial cells (HBMEC) and infected PN cells led to the establishment of larger (160%, p=
- Published
- 2017
49. Cost-of-illness of psoriasis - results of a German cross-sectional study
- Author
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D Jungen, Klaus Strömer, Diamant Thaçi, Matthias Augustin, S Purwins, A Langenbruch, Marc Alexander Radtke, N. Zander, Kristian Reich, and M. Gutknecht
- Subjects
Adult ,Male ,medicine.medical_specialty ,Cross-sectional study ,Total cost ,Dermatology ,Drug Costs ,Direct Service Costs ,030207 dermatology & venereal diseases ,03 medical and health sciences ,Indirect costs ,0302 clinical medicine ,Sex Factors ,Cost of Illness ,Psoriasis ,Germany ,Surveys and Questionnaires ,Cost of illness ,Medicine ,Humans ,Treatment costs ,health care economics and organizations ,Aged ,Health economics ,Insurance, Health ,business.industry ,Age Factors ,Health Care Costs ,Middle Aged ,medicine.disease ,Surgery ,Infectious Diseases ,Cross-Sectional Studies ,Fees and Charges ,030220 oncology & carcinogenesis ,Sick leave ,Female ,Health Expenditures ,Sick Leave ,business ,Demography - Abstract
Background Though psoriasis poses a substantial chronic socio-economic burden, few studies have addressed the economic impact in Germany. Objectives The objective was to evaluate the annual costs of psoriasis in Germany from the societal perspective. Methods A cross-sectional study was performed in randomly selected German dermatology practices and clinics in 2013/2014 using standardised questionnaires of illness-related costs. Costs were grouped by perspective and category as well as analysed by sex and age. Group differences were tested by non-parametric tests. Results Complete data were obtained from 1,158 patients in 132 centres. Annual average costs for patients with psoriasis: Total costs € 5,543 ± € 8,044, systemic treatment costs (paid by the statutory health insurances (SHI)) € 3,733 ± € 7,322, out-of-pocket costs € 224 ± € 406, total SHI costs € 4,940 ± € 7,533, direct costs € 5,164 ± € 7,581 and indirect costs € 379 ± € 2,087. Significant higher costs in male and significant lower costs in 65+-year-old patients were found. Conclusions Psoriasis induces a considerable economic burden. Between 2003 and 2014, costs have markedly shifted from hospital, out-of-pocket and indirect costs towards systemic drug costs. This article is protected by copyright. All rights reserved.
- Published
- 2017
50. Rhizosphere priming effects on soil carbon and nitrogen mineralization
- Author
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Daniel C. Keck, Donald J. Herman, Biao Zhu, Mary K. Firestone, Weixin Cheng, and Jessica L. M. Gutknecht
- Subjects
Rhizosphere ,Horticulture ,Agronomy ,Soil organic matter ,Soil water ,Soil Science ,Soil classification ,Soil carbon ,Mineralization (soil science) ,Biology ,Respiration rate ,Microbiology ,Nitrogen cycle - Abstract
Living roots and their rhizodeposits affect microbial activity and soil carbon (C) and nitrogen (N) mineralization. This so-called rhizosphere priming effect (RPE) has been increasingly recognized recently. However, the magnitude of the RPE and its driving mechanisms remain elusive. Here we investigated the RPE of two plant species (soybean and sunflower) grown in two soil types (a farm or a prairie soil) and sampled at two phenological stages (vegetative and mature stages) over an 88-day period in a greenhouse experiment. We measured soil C mineralization using a continuous 13C-labeling method, and quantified gross N mineralization with a 15N-pool dilution technique. We found that living roots significantly enhanced soil C mineralization, by 27–245%. This positive RPE on soil C mineralization did not vary between the two soils or the two phenological stages, but was significantly greater in sunflower compared to soybean. The magnitude of the RPE was positively correlated with rhizosphere respiration rate across all treatments, suggesting the variation of RPE among treatments was likely caused by variations in root activity and rhizodeposit quantity. Moreover, living roots stimulated gross N mineralization rate by 36–62% in five treatments, while they had no significant impact in the other three treatments. We also quantified soil microbial biomass and extracellular enzyme activity when plants were at the vegetative stage. Generally, living roots increased microbial biomass carbon by 0–28%, β-glucosidase activity by 19–56%, and oxidative enzyme activity by 0–46%. These results are consistent with the positive rhizosphere effect on soil C (45–79%) and N (10–52%) mineralization measured at the same period. We also found significant positive relationships between β-glucosidase activity and soil C mineralization rates and between oxidative enzyme activity and gross N mineralization rates across treatments. These relationships provide clear evidence for the microbial activation hypothesis of RPE. Our results demonstrate that root–soil–microbial interactions can stimulate soil C and N mineralization through rhizosphere effects. The relationships between the RPE and rhizosphere respiration rate and soil enzyme activity can be used for explicit representations of RPE in soil organic matter models.
- Published
- 2014
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