1,657 results on '"M. Donnelly"'
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2. Yes, Developmental Students Can Thrive in Integrated Courses and Compressed Terms: Leveraging Institutional Data and National Trends to Build the Best Reading/Writing Program
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Kimberley M. Donnelly
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Researchers, organizations, companies, non-profits, practitioners, and to some extent, the public, are clamoring for massive reform in developmental coursework in higher education (American Association of Community Colleges, 2018; Edgecombe et al., 2014; Complete College America, 2012). One such reform is the push for integrated reading and writing (IRW) courses. The pressure for redesign of developmental reading and writing programs is intense, but other transformations in higher education are also shaping the future of developmental education. For example, as a result of joining Achieving the Dream's core program in 2019, the College of Southern Maryland (CSM) made a commitment to shift the majority of courses to a compressed 7-week format by fall term of 2021. After 18 months of implementation, CSM's new IRW curriculum in compressed terms appears to serve students about as well as the former multi-course, multi-level program. Even though the former program was robust, vigorous, and thorough, IRW in compressed terms appears to be equally effective in preparing students for success in credit-level courses, while saving them 15-30 weeks of time and up to 9 credits of cost, depending on where they were placed in the old system.
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- 2023
3. Athletic Trainers' Comfort, Competence, and Perspectives about Physically Active Individuals with Developmental Disabilities
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Patrick M. Donnelly
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Athletic trainers are healthcare providers who work in a variety of settings, including, but not limited to, secondary schools, colleges and universities, and physician clinics. Given the prevalence of developmental disabilities and the settings in which athletic trainers are employed, it is likely that athletic trainers will provide healthcare services for physically active individuals with developmental disabilities. This study examined athletic trainers' comfort and competence to provide care to physically active individuals with developmental disabilities, specifically those with mild intellectual disabilities, Autism Spectrum Disorder, and Attention-Deficit/Hyperactivity Disorder, as well as identifying sources of knowledge, and relationships between background, knowledge, experience, education, and perceived comfort and competence. A QUAN/qual mixed analysis of data collected via survey examined self-reported ratings, perceptions, and relationships among variables. Correlational analysis using Pearson correlation coefficient two-tailed test of significance (Pearson r) with a confidence level p < 0.05 demonstrated a strong positive correlation (r (89) = 0.77, p <0.001). between athletic trainer comfort and competence. Pearson Chi-Square analysis yielded a statistically significant moderate positive association between participant-rated comfort and experience (x[superscript 2] = 15.345, df = 2, N=60, p <0.001, Cramer's V = 0.506), as well as participant-rated competence and experience (x[superscript 2] = 12.969, df = 2, N=65, p <0.01, Cramer's V = 0.447). Qualitative analysis of open-ended questions yielded additional themes and insights (e.g., self-understanding, experience, disability blindness). The findings of this study seem to indicate that participants feel underprepared from an educational training standpoint but emphasize the importance of experience on perceptions of comfort and competence. This study seeks to add to the existing body of literature and inform potential curricular changes to better serve the healthcare needs of physically active individuals with developmental disabilities. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2024
4. Protein mimetic 2D FAST rescues alpha synuclein aggregation mediated early and post disease Parkinson’s phenotypes
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Nicholas H. Stillman, Johnson A. Joseph, Jemil Ahmed, Charles Zuwu Baysah, Ryan A. Dohoney, Tyler D. Ball, Alexandra G. Thomas, Tessa C. Fitch, Courtney M. Donnelly, and Sunil Kumar
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Science - Abstract
Abstract Abberent protein-protein interactions potentiate many diseases and one example is the toxic, self-assembly of α-Synuclein in the dopaminergic neurons of patients with Parkinson’s disease; therefore, a potential therapeutic strategy is the small molecule modulation of α-Synuclein aggregation. In this work, we develop an Oligopyridylamide based 2-dimensional Fragment-Assisted Structure-based Technique to identify antagonists of α-Synuclein aggregation. The technique utilizes a fragment-based screening of an extensive array of non-proteinogenic side chains in Oligopyridylamides, leading to the identification of NS132 as an antagonist of the multiple facets of α-Synuclein aggregation. We further identify a more cell permeable analog (NS163) without sacrificing activity. Oligopyridylamides rescue α-Synuclein aggregation mediated Parkinson’s disease phenotypes in dopaminergic neurons in early and post disease Caenorhabditis elegans models. We forsee tremendous potential in our technique to identify lead therapeutics for Parkinson’s disease and other diseases as it is expandable to other oligoamide scaffolds and a larger array of side chains.
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- 2024
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5. dTrmt10A impacts Hsp70 chaperone m6A levels and the stress response in the Drosophila brain
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Alexandra E. Perlegos, Xiuming Quan, Kirby M. Donnelly, Hui Shen, Emily J. Shields, Heidi Elashal, Kathy Fange Liu, and Nancy M. Bonini
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Medicine ,Science - Abstract
Abstract Chronic cellular stress has a profound impact on the brain, leading to degeneration and accelerated aging. Recent work has revealed the vital role of RNA modifications, and the proteins responsible for regulating them, in the stress response. In our study, we defined the role of CG14618/dTrmt10A, the Drosophila counterpart of human TRMT10A a N 1 -methylguanosine methyltransferase, on m6A regulation and heat stress resilience in the Drosophila brain. By m6A-IP RNA sequencing on Drosophila head tissue, we demonstrated that manipulating dTrmt10A levels indirectly regulates m6A levels on polyA + RNA. dTrmt10A exerted its influence on m6A levels on transcripts enriched for neuronal signaling and heat stress pathways, similar to the m6A methyltransferase Mettl3. Intriguingly, its impact primarily targeted 3' UTR m6A, setting it apart from the majority of Drosophila m6A-modified transcripts which display 5' UTR enrichment. Upregulation of dTrmt10A led to increased resilience to acute heat stress, decreased m6A modification on heat shock chaperones, and coincided with decreased decay of chaperone transcripts and increased translation of chaperone proteins. Overall, these findings establish a potential mechanism by which dTrmt10A regulates the acute brain stress response through m6A modification.
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- 2023
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6. Stress urinary incontinence prevalence and risk factors in female rugby players: a common health problem across four nations
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Kari Bø, Isabel S Moore, Patrick O'Halloran, Joanna Perkins, Gráinne M Donnelly, Mairéad Liston, Molly McCarthy-Ryan, Karina Leahy, and Yeomans Caithriona
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Medicine (General) ,R5-920 - Abstract
Objectives Female athletes engaging in high-impact sports have a higher prevalence of experiencing stress urinary incontinence (SUI). However, the prevalence of sport-specific SUI and associated risk factors in female rugby players is relatively unknown. We aimed to determine the prevalence of general and rugby-related SUI and identify associated risk factors and inciting events in female rugby players.Methods Observational, cross-sectional study of 396 female rugby players (age 28±8 years, mass 80±18 kg, height 1.90±0.19 m, playing years 7±6 years) participating in rugby across UK and Ireland completed an electronic questionnaire regardless of SUI status.Results 63 to 88% of players had SUI, and 43% had rugby-related SUI. There was an association with players reporting a change in incontinence status due to playing rugby (p
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- 2024
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7. Orbitofrontal and striatal metabolism, volume, thickness and structural connectivity in relation to social anhedonia in depression: A multimodal study
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Brianna M. Donnelly, David T. Hsu, John Gardus, Junying Wang, Jie Yang, Ramin V. Parsey, and Christine DeLorenzo
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Major depression disorder ,Social anhedonia ,Brain imaging ,Orbitofrontal cortex ,SSRI treatment ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Background: Social anhedonia is common within major depressive disorder (MDD) and associated with worse treatment outcomes. The orbitofrontal cortex (OFC) is implicated in both reward (medial OFC) and punishment (lateral OFC) in social decision making. Therefore, to understand the biology of social anhedonia in MDD, medial/lateral OFC metabolism, volume, and thickness, as well as structural connectivity to the striatum, amygdala, and ventral tegmental area/nucleus accumbens were examined. A positive relationship between social anhedonia and these neurobiological outcomes in the lateral OFC was hypothesized, whereas an inverse relationship was hypothesized for the medial OFC. The association between treatment-induced changes in OFC neurobiology and depression improvement were also examined. Methods: 85 medication-free participants diagnosed with MDD were assessed with Wisconsin Schizotypy Scales to assess social anhedonia and received pretreatment simultaneous fluorodeoxyglucose positron emission tomography (FDG-PET) and magnetic resonance imaging (MRI), including structural and diffusion. Participants were then treated in an 8-week randomized placebo-controlled double-blind course of escitalopram. PET/MRI were repeated following treatment. Metabolic rate of glucose uptake was quantified from dynamic FDG-PET frames using Patlak graphical analysis. Structure (volume and cortical thickness) was quantified from structural MRI using Freesurfer. To assess structural connectivity, probabilistic tractography was performed on diffusion MRI and average FA was calculated within the derived tracts. Linear mixed models with Bonferroni correction were used to examine the relationships between variables. Results: A significantly negative linear relationship between pretreatment social anhedonia score and structural connectivity between the medial OFC and the amygdala (estimated coefficient: −0.006, 95 % CI: −0.0108 – −0.0012, p-value = 0.0154) was observed. However, this finding would not survive multiple comparisons correction. No strong evidence existed to show a significant linear relationship between pretreatment social anhedonia score and metabolism, volume, thickness, or structural connectivity to any of the regions examined. There was also no strong evidence to suggest significant linear relationships between improvement in depression and percent change in these variables. Conclusions: Based on these multimodal findings, the OFC likely does not underlie social anhedonia in isolation and therefore should not be the sole target of treatment for social anhedonia. This is consistent with previous reports that other areas of the brain such as the amygdala and the striatum are highly involved in this behavior. Relatedly, amygdala-medial OFC structural connectivity could be a future target. The results of this study are crucial as, to our knowledge, they are the first to relate structure/function of the OFC with social anhedonia severity in MDD. Future work may need to involve a whole brain approach in order to develop therapeutics for social anhedonia.
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- 2024
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8. Teachers and Technology: A Qualitative Program Evaluation of Technology Skills Development in a Teacher Preparation Program
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David M. Donnelly
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This dissertation explored the systemic factors influencing learners' technology outcomes in a teacher preparation program, specifically addressing technology fluency and the ability to integrate technology into instruction. Using a combination of grounded theory and qualitative program evaluation, this study identified the scope, contexts, and systems of influence and control that have an impact on technology skills development for teacher candidates. Using backward design, this study mapped the learning experiences of teacher candidates, identifying key contributors of technology skills development within the program. Using this analysis, a conceptual framework outlining the flow of systemic influences was created, and a data collection tool was developed to quantify the technology fluency and disposition of program faculty. These tools can be used to identify and evaluate a teacher preparation program's technology outcomes, and evaluate the technology abilities of program staff. Through qualitative interviews, this tool was used to identify the overall temperament toward technology within the program and identify areas in which improvements could be made. Recommendations were made for the specific program in the final chapter. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
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- 2022
9. The Axis of Access: A Quantitative Ethnography of Presidential Discourse on the Construct of College Access in the United States
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Pamela M. Donnelly
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Federal discourse pertaining to college access requires clarified definition. Use of the college access construct has become commonplace, yet no unified refinement of meaning exists. This study, which covered U.S. presidential communications from January 2009 to October 2021, addressed the abstraction of language as leaders presented ideas, policies, and opinions. Observable trends impacting social mobility for students from underserved populations were of central interest. The research methodology, Quantitative Ethnography (QE), used the tool of Epistemic Network Analysis (ENA). Eight codes were identified through grounded analysis: Affordability, Pathway Program, Underserved Populations, Class Systems, Upward Mobility, Career Readiness, Trajectory, and Career Technical Education (CTE) and assessed through postmodernism. The Code most commonly appearing in the data set was Upward Mobility. Two codes tied for second-most-common: Affordability and Pathway Programs. In terms of connections among the codes from a broad overview, the most dominant communication patterns among the three presidents included epistemic links from Pathway Programs to both Affordability and Underserved Populations. Overall congruence across administrations was notably lacking. Conclusions drawn included that presidential discourse pertaining to the U.S. college access dilemma may be accurately described as circular, as illustrated by an original figure demonstrating the researcher's "Axis of Access" concept. Due to the churn of new administrations with differing definitions of college access coming into power every 4 to 8 years, a substantial hurdle for stakeholders in the U.S. Department of Education and related divisions was identified; therefore, a recommendation made was to create a new College Access Bridge Division in the U.S. Department of Education, to enable consistency of discourse and policy implementation. The incorporation of kin networks into pathway programs starting in middle school was recommended at the pathway program level, as was expanding criteria for such programs. Both national and global implications were discussed. Of note: this dissertation marks the first utilization of QE and ENA in the field of higher education in the United States. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2022
10. A Study of the Effectiveness of IXL Math Online Software on Student Achievement in an Urban Middle School
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Shawn M. Donnelly
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The purpose of this study is to evaluate the effectiveness of IXL Math online software in raising student achievement on the New York State Math exam, with special focus on effects by student gender, ethnicity and disability status. The study includes an analysis of the relationship between scale scores and time spent using the IXL system, number of problems attempted, and skills mastered. This study is significant because national, state and local measures indicate no measurable improvement in math achievement with an alarming percentage of students scoring below proficient levels. Further, past studies examined teacher perception or student motivation regarding educational technology and achievement. To date, is the only study independently analyzing the effectiveness of a widely-used online learning application, IXL Math, in a Title 1 urban Middle School consisting of 6th, 7th and 8th grade students and measuring the impact of the online program on students most at-risk, and whose attributes comprise the lowest third percentile of achievers. A quasi-experimental research design was conducted by comparing two distinct cohorts of students--one using traditional paper assignments and the other completing IXL online assignments, and using statistical analysis, a determination was made that there was no significant difference in the scale scores between the two groups. Additionally, the interaction between IXL and gender, ethnicity, and disability, and its effect on math scores was analyzed. Two-way analysis of variance tests and Pearson's correlation were conducted using SPSS software package. The major findings are discussed offering recommendations for future practice and research. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2021
11. Structural Determination of the Australian Bat Lyssavirus Nucleoprotein and Phosphoprotein Complex
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Camilla M. Donnelly, Murray Stewart, Justin A. Roby, Vinod Sundaramoorthy, and Jade K. Forwood
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rhabdovirus ,Australian bat lyssavirus ,rabies virus ,phosphoprotein ,nucleoprotein ,nucleocapsid ,Microbiology ,QR1-502 - Abstract
Australian bat lyssavirus (ABLV) shows similar clinical symptoms as rabies, but there are currently no protein structures available for ABLV proteins. In lyssaviruses, the interaction between nucleoprotein (N) and phosphoprotein (N) in the absence of RNA generates a complex (N0P) that is crucial for viral assembly, and understanding the interface between these two proteins has the potential to provide insight into a key feature: the viral lifecycle. In this study, we used recombinant chimeric protein expression and X-ray crystallography to determine the structure of ABLV nucleoprotein bound to residues 1–40 of its phosphoprotein chaperone. Comparison of our results with the recently generated structure of RABV CVS-11 N0P demonstrated a highly conserved interface in this complex. Because the N0P interface is conserved in the lyssaviruses of phylogroup I, it is an attractive therapeutic target for multiple rabies-causing viral species.
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- 2023
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12. Design and Implementation of Digital Aids to Empower Struggling Readers
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Patrick M. Donnelly
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Decades of research have established effective curricula for struggling readers. In the digital age, educational technologies expand access to apps and resources to supplement classroom instruction, but most lack scientific backing. "Sound it Out," a collaborative effort between reading researchers and technology developers, aims to address this disconnect. This dissertation describes the design and development of the "Sound it Out" tool using three intervention studies of children ages 7-15 (n = 175). Each study answers questions of efficacy and the context for which this tool is ideally suited. We find that, with practice, emerging readers can effectively leverage the tool's symbolic vowel annotation to decode novel words more accurately. We also find generalizable gains with extended practice and enhanced benefits with caregiver-supervised usage. Results demonstrate that "Sound it Out" is an effective scaffold for vowel recognition in emerging readers. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2020
13. Henipavirus Matrix Protein Employs a Non-Classical Nuclear Localization Signal Binding Mechanism
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Camilla M. Donnelly, Olivia A. Vogel, Megan R. Edwards, Paige E. Taylor, Justin A. Roby, Jade K. Forwood, and Christopher F. Basler
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Nipah virus ,Hendra virus ,henipavirus ,matrix protein ,importin ,X-ray crystallography ,Microbiology ,QR1-502 - Abstract
Nipah virus (NiV) and Hendra virus (HeV) are highly pathogenic species from the Henipavirus genus within the paramyxovirus family and are harbored by Pteropus Flying Fox species. Henipaviruses cause severe respiratory disease, neural symptoms, and encephalitis in various animals and humans, with human mortality rates exceeding 70% in some NiV outbreaks. The henipavirus matrix protein (M), which drives viral assembly and budding of the virion, also performs non-structural functions as a type I interferon antagonist. Interestingly, M also undergoes nuclear trafficking that mediates critical monoubiquitination for downstream cell sorting, membrane association, and budding processes. Based on the NiV and HeV M X-ray crystal structures and cell-based assays, M possesses a putative monopartite nuclear localization signal (NLS) (residues 82KRKKIR87; NLS1 HeV), positioned on an exposed flexible loop and typical of how many NLSs bind importin alpha (IMPα), and a putative bipartite NLS (244RR-10X-KRK258; NLS2 HeV), positioned within an α-helix that is far less typical. Here, we employed X-ray crystallography to determine the binding interface of these M NLSs and IMPα. The interaction of both NLS peptides with IMPα was established, with NLS1 binding the IMPα major binding site, and NLS2 binding as a non-classical NLS to the minor site. Co-immunoprecipitation (co-IP) and immunofluorescence assays (IFA) confirm the critical role of NLS2, and specifically K258. Additionally, localization studies demonstrated a supportive role for NLS1 in M nuclear localization. These studies provide additional insight into the critical mechanisms of M nucleocytoplasmic transport, the study of which can provide a greater understanding of viral pathogenesis and uncover a potential target for novel therapeutics for henipaviral diseases.
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- 2023
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14. Structural Characterization of Porcine Adeno-Associated Virus Capsid Protein with Nuclear Trafficking Protein Importin Alpha Reveals a Bipartite Nuclear Localization Signal
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Mikayla Hoad, Emily M. Cross, Camilla M. Donnelly, Subir Sarker, Justin A. Roby, and Jade K. Forwood
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Adeno-associated virus ,importin alpha ,nuclear localization ,binding interface ,structure ,Microbiology ,QR1-502 - Abstract
Adeno-associated viruses (AAV) are important vectors for gene therapy, and accordingly, many aspects of their cell transduction pathway have been well characterized. However, the specific mechanisms that AAV virions use to enter the host nucleus remain largely unresolved. We therefore aimed to reveal the interactions between the AAV Cap protein and the nuclear transport protein importin alpha (IMPα) at an atomic resolution. Herein we expanded upon our earlier research into the Cap nuclear localization signal (NLS) of a porcine AAV isolate, by examining the influence of upstream basic regions (BRs) towards IMPα binding. Using a high-resolution crystal structure, we identified that the IMPα binding determinants of the porcine AAV Cap comprise a bipartite NLS with an N-terminal BR binding at the minor site of IMPα, and the previously identified NLS motif binding at the major site. Quantitative assays showed a vast difference in binding affinity between the previously determined monopartite NLS, and bipartite NLS described in this study. Our results provide a detailed molecular view of the interaction between AAV capsids and the nuclear import receptor, and support the findings that AAV capsids enter the nucleus by binding the nuclear import adapter IMPα using the classical nuclear localization pathway.
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- 2023
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15. The abscopal effect: inducing immunogenicity in the treatment of brain metastases secondary to lung cancer and melanoma
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Jovanna A. Tracz, Brianna M. Donnelly, Sam Ngu, Morana Vojnic, A.Gabriella Wernicke, and Randy S. D’Amico
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Cancer Research ,Neurology ,Oncology ,Neurology (clinical) - Published
- 2023
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16. Sports Medicine and the Pelvic Floor
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Gráinne M. Donnelly and Isabel S. Moore
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Public Health, Environmental and Occupational Health ,Orthopedics and Sports Medicine ,General Medicine - Published
- 2023
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17. Head and neck angiography in the pediatric population: single-center experience with indications, safety, feasibility, and technical differences among infants, childhood, and adolescents
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Andre Monteiro, Brianna M. Donnelly, Matthew J. Recker, Asham Khan, Jason M. Davies, Kenneth V. Snyder, Renee M. Reynolds, Adnan H. Siddiqui, and Elad I. Levy
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General Medicine - Abstract
OBJECTIVE Pediatric patients are candidates for head and neck endovascular procedures less frequently than adults. Data on utilization, feasibility, safety, and technical details of head and neck angiography in the pediatric population are scarce. METHODS The authors performed a retrospective review of their center’s endovascular database to identify all patients ≤ 18 years of age who underwent diagnostic or interventional catheter-based angiography of the head and neck. Procedure-related variables for identified patients were compared across infancy (birth to 2 years), childhood (> 2–11 years), and adolescence (> 11–18 years). RESULTS One hundred twenty-one pediatric patients who underwent 274 angiogram procedures were included in this study. Of these angiograms, 197 were diagnostic and 118 were interventional (including 41 of the diagnostic angiogram procedures that were performed concurrently with the intervention). The most common indications for diagnostic angiograms were suspected vascular malformations in 52 cases (26.4%) and aneurysms in 23 (11.7%). The rate of positive findings on diagnostic angiograms ranged from 27.3% to 80% according to the indication. Access site–related complications were observed after 2 punctures (0.7%). Procedure-related complications occurred in 3 patients (1.1%). In adolescents, the rates of general anesthesia use and sheathless access were significantly lower (each p < 0.001), and the rates of radial artery access (p < 0.001); 5-French (5F) (p = 0.01), 6F (p < 0.001), and 8F (p = 0.03) access; and closure device usage (p < 0.001) were significantly higher. In infants, the rates of ultrasound guidance, 4F access, and failure of the primary puncture site were significantly higher (each p < 0.001). CONCLUSIONS Head and neck angiograms in the pediatric population were feasible and safe in the authors’ overall experience. Technical differences were observed across the infant, childhood, and adolescent groups, but safe outcomes were similar throughout these age ranges.
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- 2023
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18. Decarbonization of the chemical industry through electrification: Barriers and opportunities
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Dharik S. Mallapragada, Yury Dvorkin, Miguel A. Modestino, Daniel V. Esposito, Wilson A. Smith, Bri-Mathias Hodge, Michael P. Harold, Vincent M. Donnelly, Alice Nuz, Casey Bloomquist, Kyri Baker, Lars C. Grabow, Yushan Yan, Nav Nidhi Rajput, Ryan L. Hartman, Elizabeth J. Biddinger, Eray S. Aydil, and André D. Taylor
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General Energy - Published
- 2023
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19. Phagocytic glia are obligatory intermediates in transmission of mutant huntingtin aggregates across neuronal synapses
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Kirby M Donnelly, Olivia R DeLorenzo, Aprem DA Zaya, Gabrielle E Pisano, Wint M Thu, Liqun Luo, Ron R Kopito, and Margaret M Panning Pearce
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huntingtin ,prion-like ,neurodegeneration ,phagocytic glia ,Draper ,protein aggregate ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Emerging evidence supports the hypothesis that pathogenic protein aggregates associated with neurodegenerative diseases spread from cell to cell through the brain in a manner akin to infectious prions. Here, we show that mutant huntingtin (mHtt) aggregates associated with Huntington disease transfer anterogradely from presynaptic to postsynaptic neurons in the adult Drosophila olfactory system. Trans-synaptic transmission of mHtt aggregates is inversely correlated with neuronal activity and blocked by inhibiting caspases in presynaptic neurons, implicating synaptic dysfunction and cell death in aggregate spreading. Remarkably, mHtt aggregate transmission across synapses requires the glial scavenger receptor Draper and involves a transient visit to the glial cytoplasm, indicating that phagocytic glia act as obligatory intermediates in aggregate spreading between synaptically-connected neurons. These findings expand our understanding of phagocytic glia as double-edged players in neurodegeneration—by clearing neurotoxic protein aggregates, but also providing an opportunity for prion-like seeds to evade phagolysosomal degradation and propagate further in the brain.
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- 2020
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20. Subverting Mainstream Narratives in the Reagan Era: Giving Power to the People
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Ashley M. Donnelly
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- 2018
21. An examination of whether associations exist between maternal and neonatal 25OHD and infant size and adiposity at birth, 6–9 months and 2–2.5 years of age – a longitudinal observational study from the ROLO study
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Mary K. Horan, Jean M. Donnelly, Malachi J. McKenna, Brenda Crosbie, Mark T. Kilbane, and Fionnuala M. McAuliffe
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Fetal programming ,Maternal vitamin D ,Offspring adiposity ,Childhood obesity ,Maternal nutrition ,ROLO study ,Nutrition. Foods and food supply ,TX341-641 ,Food processing and manufacture ,TP368-456 ,Medicine (General) ,R5-920 - Abstract
Abstract Background Vitamin D status in pregnancy and offspring bone health effects are well established, yet limited knowledge exists on the effect of maternal vitamin D status on offspring size/adiposity. This study examines the association of early (13 weeks), late (28 weeks) pregnancy and neonatal (umbilical) 25-hydroxyvitamin D (25OHD) on offspring size/adiposity. Methods This analysis included mother-infant pairs from the ROLO study at birth (n = 292), 6–9 months (n = 160) and 2–2.5 years (n = 287) postpartum. Results Using Institute of Medicine 2011 Report criteria, 30% of women in early pregnancy and 38% in late pregnancy were at risk of vitamin D deficiency (25OHD
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- 2017
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22. Intensive Summer Intervention Drives Linear Growth of Reading Skill in Struggling Readers
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Patrick M. Donnelly, Elizabeth Huber, and Jason D. Yeatman
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response to intervention ,literacy ,growth curves ,dyslexia ,summer intervention ,Psychology ,BF1-990 - Abstract
A major achievement of reading research has been the development of effective intervention programs for struggling readers. Most intervention studies employ a pre-post design, to examine efficacy, but this precludes the study of growth curves over the course of the intervention program. Determining the time-course of improvement is essential for cost-effective, evidence-based decisions on the optimal intervention dosage. The goal of this study was to analyze reading growth curves during an intensive summer intervention program. A cohort of 31 children (6–12 years) with reading difficulties (N = 21 with dyslexia diagnosis) were enrolled in 160 h of intervention occurring over 8 weeks of summer vacation. We collected behavioral measures over 4 sessions assessing decoding, oral reading fluency, and comprehension. Mixed-effects modeling of longitudinal measurements revealed a linear dose-response relationship between hours of intervention and improvement in reading ability; there was significant linear growth on every measure of reading skill and none of the measures showed non-linear growth trajectories. Decoding skills showed substantial growth [Cohen’s d = 0.85 (WJ Basic Reading Skills)], with fluency and comprehension growing more gradually [d = 0.41 (WJ Reading Fluency)]. These results highlight the opportunity to improve reading skills over an intensive, short-term summer intervention program, and the linear dose-response relationship between duration and gains enables educators to set reading level goals and design a treatment plan to achieve them.
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- 2019
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23. Coiling Variations for Treatment of Ruptured Intracranial Aneurysms: A Meta-Analytical Comparison of Comaneci-, Stent-, and Balloon-Coiling Assistance Techniques
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Jaims Lim, Andre Monteiro, Wady T. Jacoby, Hannah Danziger, Cathleen C. Kuo, Hussain Alkhars, Brianna M. Donnelly, Wasiq I. Khawar, Ming X. Lian, Joseph Iskander, Jason M. Davies, Kenneth V. Snyder, Adnan H. Siddiqui, and Elad I. Levy
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Surgery ,Neurology (clinical) - Published
- 2023
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24. Temperature Changes During EP Ablation In Veterans and 1-year Success Rates: A retrospective pilot analysis
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Roman Schumann, Matthew Yuyun, Taruna Chandok, Houman Amirfarzan, Christopher M. Donnelly, Ryan E. Ferguson, and Sarah M. Leatherman
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Anesthesiology and Pain Medicine ,Cardiology and Cardiovascular Medicine - Published
- 2023
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25. Real-time monitoring of atomic layer etching in Cl2/Ar pulsed gas, pulsed power plasmas by optical emission spectroscopy
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Qinzhen Hao, Pilbum Kim, Sang Ki Nam, Song-Yun Kang, and Vincent M. Donnelly
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Surfaces and Interfaces ,Condensed Matter Physics ,Surfaces, Coatings and Films - Abstract
Optical emission spectroscopy was used as a real-time monitor of the atomic layer etching (ALE) of Si in an Ar inductively coupled plasma (ICP). Pulses of Cl2 gas were repetitively injected into a continuous flow of Ar, followed by the ignition of the ICP and the application of substrate rf bias power (either continuous or rapidly modulated). Optical emissions from Si, SiCl, SiCl2, Ar, and Cl were monitored along a line parallel and close to the substrate surface as a function of time during the bias period, as well as in the ICP without bias power. From an analysis of the time dependencies of the decays of emissions during the modulated bias periods, it is argued that emissions at high Ar carrier gas flow rates are mainly from the primary products sputtered by the energetic Ar ions. Products decay with different, non-exponential time signatures. Cl and SiCl2 emissions decay to nearly undetectable levels toward the end of the bias period. SiCl emission follows a decay profile between that of Si and SiCl2. The time-integrated SiCl2 emission intensity scales linearly with time and correlates with etching rates measured by laser interferometry. The amount of Si etched per ALE cycle and the degree of self-limiting evolution of etching products is a sensitive function of the timing between the initiation and termination of Cl2 flow into the reactor and the application of ICP power. Spatially resolved optical emission is shown to be a useful in situ diagnosis, providing mechanistic insights, as well as process optimization for plasma-assisted atomic layer etching. It is also shown that the emission bands between 360 and 400 nm that are commonly observed during Si etching in a chlorine-containing plasma and are often ascribed to SiCl3 or SiCl3+ are instead most likely the A2Σ → X2Πr system of SiCl.
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- 2023
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26. Supplementary Figures S1 - S4 from Growth Factor–Independent 1 Is a Tumor Suppressor Gene in Colorectal Cancer
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Noah F. Shroyer, Milton J. Finegold, Julien Dubrulle, Joann M. Butkus, Shreena Patel, Zachary K. Criss, Jessica M. Donnelly, Christopher S. Williams, Xi Chen, Yuan-Hung Lo, and Min-Shan Chen
- Abstract
Supplementary Figure 1. Specificity of GFI1 antibody. Supplementary Figure 2. Cell cycle and apoptosis analysis of GFI1-expressing CRC cancer cell lines in vitro. Supplementary Figure 3. Expression of CDX2 in the intestine. Supplementary Figure 4. Loss of Gfi1 affects secretory cell lineages.
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- 2023
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27. Implementation and Maturity of Clinical Learning Environment Components Across Pediatric Residency Programs
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Eric Zwemer, Janet R. Serwint, Kira Sieplinga, Paria M. Wilson, Sarah Webber, Elizabeth Rodriguez Lien, Jessica C. Babal, Kathleen M. Donnelly, Michele Holloway Nichols, Maneesh Batra, Alan Schwartz, and Jennifer W. Reese
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Pediatrics, Perinatology and Child Health - Published
- 2023
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28. Pretreatment and Posttreatment Factors Associated with Shunt-Dependent Hydrocephalus After Aneurysmal Subarachnoid Hemorrhage: A Systematic Review and Meta-Analysis
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Manhal M. Siddiqi, Wasiq I. Khawar, Brianna M. Donnelly, Jaims Lim, Cathleen C. Kuo, Andre Monteiro, Ammad A. Baig, Muhammad Waqas, Mohammed A.R. Soliman, Jason M. Davies, Kenneth V. Snyder, Elad I. Levy, Adnan H. Siddiqui, and Kunal Vakharia
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Surgery ,Neurology (clinical) - Published
- 2023
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29. Running During Pregnancy and Postpartum, Part B: How Does Running-Related Advice and Guidance Received During Pregnancy and Postpartum Affect Women's Running Habits?
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Gráinne M. Donnelly, Megan L. James, Celeste E. Coltman, Emma Brockwell, Joanna Perkins, and Isabel S. Moore
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- 2022
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30. Dorsal dry needling to the pronator quadratus muscle is a safe and valid technique: A cadaveric study
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Albert Pérez-Bellmunt, Carlos López-de-Celis, Jacobo Rodríguez-Sanz, César Hidalgo-García, Joseph M. Donnelly, Simón A Cedeño-Bermúdez, and César Fernández-de-las-Peñas
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Physical Therapy, Sports Therapy and Rehabilitation - Abstract
The pronator quadratus (PQ) muscle is an important stabilizer of the distal radio-ulnar joint and its pain referral pattern can mimic median or ulnar neuropathy. Research on treatment safety and efficacy with dry needling is scarce.To determine if a solid filiform needle accurately and safely penetrates the PQ during simulated clinical application of dry needling.: A cadaveric descriptive study was conducted. Needling insertion of PQ was performed in 10 cryopreserved forearms with a 30*0.32 mm solid filiform needle. With the forearm pronated, the needle was inserted 3 cm proximal to the ulnar styloid in an anterior direction toward the muscle. The needle was advanced into the PQ based upon clinician judgment. Safety was assessed by calculating the distance from the needle to the surrounding neurovascular bundles.Accurate needle penetration of the PQ was observed in 90% of the cadavers (needle penetration: 19.8 ± 4.0 mm, 95%CI 17.0 to 22.6 mm). No neurovascular bundle was pierced during needling in any specimen forearms. The distance from the tip of the needle was 15.1 ± 4.8 mm (95%CI 11.7 to 18.5 mm) to the ulnar nerve, 15.6 ± 7.6 mm (95%CI 10.0 to 21 mm) to the ulnar artery, 11.2 ± 3.3 mm (95%CI 8.8 to 13.6 mm) to the median nerve, and 4.9 ± 1.4 mm (95%CI 3.9 to 5.9 mm) to the anterior interosseous neurovascular bundle.The results from this cadaveric study support the assumption that needling of the PQ by the dorsal aspect of the forearm can be accurately and safely conducted by an experienced clinician. Studies investigating the clinical safety and effectiveness of this interventions are needed.
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- 2022
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31. Running During Pregnancy and Postpartum, Part A: Why Do Women Stop Running During Pregnancy and Not Return to Running in the Postpartum Period?
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Megan L. James, Isabel S. Moore, Gráinne M. Donnelly, Emma Brockwell, Joanna Perkins, and Celeste E. Coltman
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- 2022
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32. Beyond the Musculoskeletal System: Considering Whole-Systems Readiness for Running Postpartum
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Gráinne M. Donnelly, Emma Brockwell, Alan Rankin, and Isabel S. Moore
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- 2022
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33. Supplementary Figures from Using Machine Learning Algorithms to Predict Immunotherapy Response in Patients with Advanced Melanoma
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Iman Osman, Aristotelis Tsirigos, Judy Zhong, Jeffrey S. Weber, Anna C. Pavlick, David L. Rimm, Sofia Nomikou, James R. Patrinely, Lee Wheless, Douglas B. Johnson, Yuhe Xia, Irineu Illa-Bochaca, George Jour, Douglas M. Donnelly, Nicolas Coudray, and Paul Johannet
- Abstract
Supplemental Figure 1. Training a Response Classifier to predict whether treatment-naïve advanced melanoma patients will respond to immunotherapy. (a) Schematic showing our computational workflow. We initially trained the neural network with a 5-fold cross validation. Hyper-parameter selection occurred during this phase. After selecting training conditions, we retrained the model on the entire NYU dataset using those parameters. We then tested the classifier on the independent cohort from Vanderbilt (b) During the 5-fold cross validation, neural network accuracy continued to improve until around 175,000 iterations. ROC curves show the performance of each of the 5 test sets at the optimal threshold. Supplemental Figure 2. Performance of the fully trained neural network and logistic regression classifiers from the NYU training dataset. Supplemental Figure 3. Development of a machine learning classifier that predicts whether treatment-naïve advanced melanoma patients will respond to immunotherapy or suffer disease progression. (a) Schematic showing the computational work-flow that is presented in this study. After development of the Segmentation Classifier, all tiles within the training and validation datasets were labeled for the 3 regions of interest. Hyper-parameter selection was performed during the 5-fold cross validation. Then, the model was retrained on the entire NYU dataset using the optimized foundation architecture and tested on the Vanderbilt cohort. (b) Suggested final pipeline where the slide is first pre-processed (tiled with suppression of the background tiles) and segmented by the first convolutional neural network. Identified tumor tiles are then assessed by the second network to extract a first estimate of the response to immunotherapy. The prediction is then refined by combining the output of the neural network with select clinical data. Supplemental Figure 4. Class activation mapping (CAM) analyses identify regions within the tiles that are used by the DCNN to classify the tile as (a) POD or (b) Response. From left to right, for each label, is an image of the tile image overlaid by the image from CAM analyses, the original tile image alone, and the image of CAM analyses alone. Supplemental Figure 5. CellProfiler was used to segment cell nuclei within tiles classified as having a high probability of POD or Response. The POD tiles analyzed had a prediction probability of 0.75 or higher (136,109 tiles). The Response tiles analyzed had a prediction probability of 0.25 or lower (51,220 tiles). Student's t-test was used to compare basic features of the segmented nuclei including area, density, and eccentricity. Supplemental Figure 6. Value importance of DCNN prediction, ECOG performance status, and treatment category was calculated as the absolute value of their Z-scores.
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- 2023
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34. Supplementary Tables 1-11 from Using Machine Learning Algorithms to Predict Immunotherapy Response in Patients with Advanced Melanoma
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Iman Osman, Aristotelis Tsirigos, Judy Zhong, Jeffrey S. Weber, Anna C. Pavlick, David L. Rimm, Sofia Nomikou, James R. Patrinely, Lee Wheless, Douglas B. Johnson, Yuhe Xia, Irineu Illa-Bochaca, George Jour, Douglas M. Donnelly, Nicolas Coudray, and Paul Johannet
- Abstract
Supplemental Table 1. Patient, slide, and tile distribution during the 5-fold cross validation for training the neural network on the NYU dataset. Supplemental Table 2. Odds Ratios (OR) and 95% Confidence Intervals (CI) from univariate analyses of baseline clinical and demographic variables. Supplemental Table 3. AUC for each of 5 independent test runs and the average AUC for both classifiers when applied to Vanderbilt slides scanned with the Aperio AT2. Supplemental Table 4. AUC for each of 5 independent test runs and the average AUC for both classifiers when applied to Vanderbilt slides scanned with the Leica SCN400. Supplemental Table 5. AUC with 95% confidence intervals for the DCNN and multivariable classifiers when applied exclusively to lymph node or soft tissue from the Vanderbilt dataset. Supplemental Table 6. Results of 3 independent test runs and the average performance of the DCNN classifier on slides from Vanderbilt scanned at 10x magnification. Shown are area under the curve (AUC) and 95% confidence intervals (CI). Supplemental Table 7. Hazard Ratios (HR) with 95% Confidence Intervals (CI) for the clinical variables used in the multivariable prediction model. Supplemental Table 8. AUC and 95% confidence intervals for the neural network prediction, ECOG performance status, treatment category, and each combination of the variables. Supplemental Table 9. Value importance of treatment category, baseline ECOG, and DCNN are reported as the absolute value of the Z-score. Supplemental Table 10. Confusion matrix for predictions of PFS on the cohort of Vanderbilt patients when slides were scanned with an Aperio AT2 scanner. Supplemental Table 11. Confusion matrix for predictions of PFS on the cohort of Vanderbilt patients when slides were scanned with a Leica SCN400 scanner.
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- 2023
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35. Data from Using Machine Learning Algorithms to Predict Immunotherapy Response in Patients with Advanced Melanoma
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Iman Osman, Aristotelis Tsirigos, Judy Zhong, Jeffrey S. Weber, Anna C. Pavlick, David L. Rimm, Sofia Nomikou, James R. Patrinely, Lee Wheless, Douglas B. Johnson, Yuhe Xia, Irineu Illa-Bochaca, George Jour, Douglas M. Donnelly, Nicolas Coudray, and Paul Johannet
- Abstract
Purpose:Several biomarkers of response to immune checkpoint inhibitors (ICI) show potential but are not yet scalable to the clinic. We developed a pipeline that integrates deep learning on histology specimens with clinical data to predict ICI response in advanced melanoma.Experimental Design:We used a training cohort from New York University (New York, NY) and a validation cohort from Vanderbilt University (Nashville, TN). We built a multivariable classifier that integrates neural network predictions with clinical data. A ROC curve was generated and the optimal threshold was used to stratify patients as high versus low risk for progression. Kaplan–Meier curves compared progression-free survival (PFS) between the groups. The classifier was validated on two slide scanners (Aperio AT2 and Leica SCN400).Results:The multivariable classifier predicted response with AUC 0.800 on images from the Aperio AT2 and AUC 0.805 on images from the Leica SCN400. The classifier accurately stratified patients into high versus low risk for disease progression. Vanderbilt patients classified as high risk for progression had significantly worse PFS than those classified as low risk (P = 0.02 for the Aperio AT2; P = 0.03 for the Leica SCN400).Conclusions:Histology slides and patients' clinicodemographic characteristics are readily available through standard of care and have the potential to predict ICI treatment outcomes. With prospective validation, we believe our approach has potential for integration into clinical practice.
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- 2023
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36. Supplementary File 1 from Using Machine Learning Algorithms to Predict Immunotherapy Response in Patients with Advanced Melanoma
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Iman Osman, Aristotelis Tsirigos, Judy Zhong, Jeffrey S. Weber, Anna C. Pavlick, David L. Rimm, Sofia Nomikou, James R. Patrinely, Lee Wheless, Douglas B. Johnson, Yuhe Xia, Irineu Illa-Bochaca, George Jour, Douglas M. Donnelly, Nicolas Coudray, and Paul Johannet
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Deidentified patient clinical and demographic characteristics
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- 2023
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37. The Impact of Dark Triad Personality Traits and Gender on Whistleblowing Decisions
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Phebe L. Davis, Amy M. Donnelly, and Robin R. Radtke
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- 2023
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38. O02 Improving antimicrobial use in HSE older persons residential care facilities
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M Shah, A Clancy, M Regan, A M Maher, S Armitage, C Ryan, C Mannion, P Sheehan, O Gallagher, R Foran, S Fagan, M Donnelly, and B Love
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Microbiology (medical) ,Infectious Diseases ,Immunology ,Immunology and Allergy ,Microbiology - Abstract
Background Antimicrobial use in Irish older persons residential care facilities (OP RCFs) is higher than in other European countries. In 2020/21, for the first time, an antimicrobial pharmacist (AMP) was appointed to each community healthcare organization (CHO) to monitor, develop and promote antimicrobial stewardship in community settings. Objectives To establish baseline antibiotic use, develop antimicrobial stewardship tools for OP RCFs, promote best practice in relation to antimicrobial stewardship (AMS) and monitor trends in antimicrobial use in HSE (state-run) OP RCFs. Methods A baseline point prevalence survey (PPS) of antimicrobial use was conducted across all HSE OP RCFs between October 2020 and August 2021. Following the survey, key national recommendations and AMS resources were developed in collaboration with the national Antimicrobial Resistance and Infection Control Programme. Feedback was provided to participating facilities by CHO AMPs with antimicrobial stewardship support and education for nursing and medical staff. In September 2021, monthly monitoring of antibiotic use was established in HSE OP RCFs in collaboration with local managers, to capture the proportion of antibiotics used for prophylaxis or treatment each month. Results A baseline PPS of antimicrobial use in 2020/21 showed that 11.9% (528/4446) of residents were on a systemic antibiotic, with 6.3% on antibiotic prophylaxis. Urinary tract infection accounted for 51% of antibiotic prescriptions. Following the baseline PPS, CHO AMPs developed an AMS toolkit for OP RCFs, engaged with nursing and medical staff to communicate PPS results, AMS resources and support implementation of AMS recommendations. Subsequently, monthly self-reporting of antimicrobial use in HSE OP RCFs was commenced in September 2021 and showed a sustained decrease in antimicrobial use with 7.9% residents on an antibiotic in Quarter 2 2022, with 2.7% on antibiotic prophylaxis. Conclusions Newly appointed CHO AMPs have successfully promoted AMS across HSE OP RCFs. Following audit, feedback, education, development and promotion of antimicrobial stewardship resources, there was a sustained decrease in the proportion of residents on antibiotics used for treatment and prophylaxis of infection.
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- 2023
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39. P17 National antimicrobial point prevalence survey in adult inpatient mental health facilities in Ireland
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S Fagan, M Donnelly, A Clancy, M Regan, A M Maher, C Ryan, S Armitage, M Shah, P Sheehan, C Mannion, O Gallagher, R Foran, C Devine, and B Love
- Subjects
Microbiology (medical) ,Infectious Diseases ,Immunology ,Immunology and Allergy ,Microbiology - Abstract
Background Antimicrobial use in mental health inpatient settings has not been extensively examined in Ireland. The Healthcare-Associated Infection and Antimicrobial Use in Long-Term Care Facilities (HALT) study 2016 found that Irish long-term care facilities caring for residents with psychiatric conditions had an antimicrobial prevalence rate of 7.7%, higher than the European average of 4.9%. National community antimicrobial prescribing guidelines are available at www.antibioticprescribing.ie. In addition, a preferred antibiotic initiative for community settings advocates prescribers to choose ‘Green’ (preferred) antibiotics over ‘Red’ (reserved) agents. Reserved agents are considered to have more adverse effects, drug interactions and potential for development of antimicrobial resistance. The patient safety implications of antimicrobial stewardship along with an ageing population, and potential drug–drug interactions between many antimicrobials and psychotropic medications prompted a review of antimicrobial use practices in mental health services. Methods A sample of adult inpatient mental health facilities (MHF) operated by the state's Health Service Executive (HSE) were surveyed by community antimicrobial pharmacists (AMPs) between November 2021 and January 2022. AMPs reviewed patients’ medication charts for systemic antimicrobial prescriptions in the previous 30 days in addition to medical notes and laboratory results (where available). Adherence to HSE National community antimicrobial guidelines and the systems and structures in place to support antimicrobial stewardship were assessed. Results In total, 1003 patients in 51 MHFs were surveyed. At the time of survey, 6.3% (n=66) patients were on a systemic antimicrobial and 15% (n=153) had received a systemic antimicrobial within the previous 30 days. Prophylaxis accounted for 50% of antibiotic use (3.3% of all patients), with the most common indication being the prevention of urinary tract infection (UTI) (58%). Prophylaxis duration exceeded six months in 61% of prescriptions. The median duration of treatment courses was seven days. The proportion of ‘Green’ (preferred) antimicrobials versus ‘Red’ (reserved) antimicrobials was 58% versus 38%. Co-amoxiclav, a ‘Red’ agent was the most commonly prescribed antibiotic for treatment of infection (31%). Adherence with choice of antimicrobial agent as per national antimicrobial guidelines was 76%; adherence of dosing regimen was 75% and adherence with recommended duration was 46%. The main themes for non-adherence with choice of agent were use of unnecessarily broad spectrum agents, nitrofurantoin prescribed in renal impairment and inappropriate formulation of nitrofurantoin chosen. Dipstick urinalysis was performed routinely (on admission and/or at designated intervals) for persons asymptomatic of UTI in 53% (n=27) of MHFs. Conclusions This PPS established antimicrobial use practices in HSE MHFs and identified opportunities for improvement relating to the safe and optimal use of antimicrobials. Key national recommendations from this survey were
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- 2023
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40. The Intrinsically Disordered W Protein Is Multifunctional during Henipavirus Infection, Disrupting Host Signalling Pathways and Nuclear Import
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Sofiya Tsimbalyuk, Emily M. Cross, Mikayla Hoad, Camilla M. Donnelly, Justin A. Roby, and Jade K. Forwood
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intrinsically disordered ,W protein ,henipaviruses ,STAT ,IRF-3 ,Cytology ,QH573-671 - Abstract
Nipah and Hendra viruses are highly pathogenic, zoonotic henipaviruses that encode proteins that inhibit the host’s innate immune response. The W protein is one of four products encoded from the P gene and binds a number of host proteins to regulate signalling pathways. The W protein is intrinsically disordered, a structural attribute that contributes to its diverse host protein interactions. Here, we review the role of W in innate immune suppression through inhibition of both pattern recognition receptor (PRR) pathways and interferon (IFN)-responsive signalling. PRR stimulation leading to activation of IRF-3 and IFN release is blocked by henipavirus W, and unphosphorylated STAT proteins are sequestered within the nucleus of host cells by W, thereby inhibiting the induction of IFN stimulated genes. We examine the critical role of nuclear transport in multiple functions of W and how specific binding of importin-alpha (Impα) isoforms, and the 14-3-3 group of regulatory proteins suggests further modulation of these processes. Overall, the disordered nature and multiple functions of W warrant further investigation to understand henipavirus pathogenesis and may reveal insights aiding the development of novel therapeutics.
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- 2020
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41. Who publishes in 'predatory' journals?
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Jingfeng Xia, Jennifer L. Harmon, Kevin G. Connolly, Ryan M. Donnelly, Mary R. Anderson, and Heather A. Howard
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- 2015
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42. 140 FAMILY DEMENTIA SUPPORT TRAINING—AN INTEGRATED CARE APPROACH
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C McHale, A Fallon, M Donnelly, J Dookhy, C McGuinn, M Domsa, D McNally, F Tobin, and S Kennelly
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Aging ,General Medicine ,Geriatrics and Gerontology - Abstract
Background There are approximately 64,000 people living with a diagnosis of dementia in Ireland. This number is expected to double to 150,000 by 2045. The growing need for post diagnostic support has been accentuated by the fact that we are living through an unprecedented Pandemic. Our Dementia Training Network identified the need for a localised educational resource for families supporting those diagnosed with dementia across our service. Methods Following a successful pilot in association with the Alzheimer’s Society of Ireland, staff from the Specialist Memory Service, Integrated Care Team, and Primary Care created a service-informed 6 week course aimed at supporting families. A focus group preceded the first course to establish preferred content. The course delivered education on Dementia; Post Diagnostic Steps; Communication; Non cognitive symptoms; Nutrition & hydration; Assistive Technology; Forward planning and Self-care. The multi-dimensional nature of staff delivering the course creates a rich tapestry of advice and information. All staff involved work together to identify, refer and support families living with dementia in the local area. The group takes place in an accessible location and time which accommodates families. Each course attendee completes a questionnaire prior to and after commencing the group. The level of satisfaction will be measured following every course. Results By the end of 2021, the group will have delivered education and support to 36 families. The automatic referral of all families to this resource will assist in building up confidence to support and enhance self-care. The combined participants from the catchment area will become a network of families joined together on their journey. Conclusion This innovative service collaboration enhances the integrated nature of the Post Diagnostic Care pathway. The Integrated care approach has served to enrich the programme and allow for timely support and advice regarding localised supports.
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- 2021
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43. A look at the global impact of COVID-19 pandemic on neurosurgical services and residency training
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Cathleen C. Kuo, Alexander O. Aguirre, Andrea Kassay, Brianna M. Donnelly, Hebatalla Bakr, Mohamed Aly, Ahmed A.M. Ezzat, and Mohamed A.R. Soliman
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Multidisciplinary - Abstract
The COVID-19 pandemic has left an indelible effect on healthcare delivery and education system, including residency training. Particularly, neurosurgical departments worldwide had to adapt their operating model to the constantly changing pandemic landscape. This review aimed to quantify the reduction in neurosurgical operative volume and describe the impact of these trends on neurosurgical residency training.We performed a comprehensive search of PubMed and EMBASE between December 2019 and October 2022 to identify studies comparing pre-pandemic and pandemic neurosurgical caseloads as well as articles detailing the impact of COVID-19 on neurosurgery residency training. Statistical analysis of quantitative data was presented as pooled odds ratio (OR) and 95% confidence intervals (CI).A total of 49 studies met the inclusion criteria, of which 12 (24.5%) were survey-based. The case volume of elective surgeries and non-elective procedures decreased by 70.4% (OR=0.296, 95%CI 0.210-0.418) and 68.2% (OR=0.318, 95%CI 0.193-0.525), respectively. A significant decrease was also observed in functional (OR=0.542, 95%CI 0.394-0.746), spine (OR=0.545, 95%CI 0.409-0.725), and skull base surgery (OR=0.545, 95%CI 0.409-0.725), whereas the caseloads for tumor (OR=1.029, 95%CI 0.838-1.263), trauma (OR=1.021, 95%CI 0.846-1.232), vascular (OR=1.001, 95%CI 0.870-1.152), and pediatric neurosurgery (OR=0.589, 95%CI 0.344-1.010) remained relatively the same between pre-pandemic and pandemic periods. The reduction in caseloads had caused concerns among residents and program directors in regard to the diminished clinical exposure, financial constraints, and mental well-being. Some positives highlighted were rapid adaptation to virtual educational platforms and increasing time for self-learning and research activities.While COVID-19 has brought about significant disruptions in neurosurgical practice and training, this unprecedented challenge has opened the door for technological advances and collaboration that broaden the accessibility of resources and reduce the worldwide gap in neurosurgical education.
- Published
- 2022
44. 88 NATIONAL ANTIMICROBIAL POINT PREVALENCE SURVEY IN HSE OLDER PERSONS RESIDENTIAL CARE FACILITIES (OPS-RCFS)
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A Clancy, M Regan, S Armitage, M Shah, C Mannion, O Gallagher, R Foran, S Fagan, M Donnelly, and B Love
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Aging ,General Medicine ,Geriatrics and Gerontology - Abstract
Background The HALT study in 2016 found that residents in Irish OPS RCFs were twice as likely to be on systemic antimicrobial compared with European average (10% v 5%). National antibiotic prescribing guidelines are available at www.antibioticprescribing.ie and prescribers are encouraged to choose ‘green’ (preferred) over ‘red’ (reserved) agents. HSE Community Antimicrobial Pharmacists (AMPs) have been employed since 2020. We aimed to establish the quality and quantity of antimicrobial prescribing in OPS-RCFs to inform antimicrobial stewardship activities. Methods All residents in HSE OPS-RCFs were surveyed between October 2020 and August 2021. AMPs reviewed all medication charts for systemic antimicrobials prescribed within previous 30 days. Medical notes +/- laboratory results were reviewed for persons on antimicrobials. Adherence to guidelines was assessed and information obtained on practices related to antimicrobial use. Results The survey included 4,448 individuals in 121 OPS RCFs. 12% were on systemic antimicrobial at time of survey. 27% received an antimicrobial in the previous 30 days. 50% of antibiotic use on survey day was for prophylaxis (6.3% of all residents). Prophylaxis exceeded 6 months in 66% persons, and 12 months in 57%. There was high usage of green versus red agents (65% vs 30%). Co-amoxiclav (red) was most commonly prescribed antimicrobial to treat infection (19%). 42% of sites reported routine use of dipstick urinalysis to support diagnosis of UTI in asymptomatic residents. 36% of sites did not have onsite electronic laboratory access. 61% of facilities did not record residents’ pneumococcal vaccination status. Conclusion Key national recommendations: Review all UTI prophylaxis within 6 months of initiation with view to de-prescribing.Cease routine use of dipstick urinalysis to support diagnosis of UTI for asymptomatic persons.Electronic access to laboratory results on-site required to support timely decision-making.All staff should be aware of the national antimicrobial guidelines.Pneumococcal vaccine status should be determined, and provided as necessary.
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- 2022
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45. NASPInet Specification - An Important Step toward Its Implementation.
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Yi Hu, M. Donnelly, Thomas Helmer, H. Tram, K. E. Martin, Manimaran Govindarasu, R. Uluski, and M. Cioni
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- 2010
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46. Culturally Responsive Companion Program for a Japanese Woman with Dementia in a U.S. Nursing Home
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Megumi Inoue, Mai Hasegawa, Catherine M Donnelly, and Catherine J. Tompkins
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education.field_of_study ,Health (social science) ,media_common.quotation_subject ,Immigration ,Population ,Face (sociological concept) ,Loneliness ,medicine.disease ,Nursing ,Philosophy of medicine ,Cultural diversity ,medicine ,Dementia ,Geriatrics and Gerontology ,medicine.symptom ,Social isolation ,Psychology ,education ,media_common - Abstract
The older foreign-born population is predicted to increase in the United States. As a whole, this population in the long-term care setting is more likely to face greater challenges associated with loneliness and social isolation due to their smaller social networks, language and cultural differences. The benefits of person-centered care have been widely recognized and may be a potential remedy for such challenges felt by older immigrants. Using a qualitative case study approach, this study explored the staff perceptions of a culturally responsive companion program provided to an older Japanese woman with advanced dementia in the long-term care setting to understand the potential benefits of such a program. The first theme that emerged was that the client benefitted from the program in regard to her physical wellbeing, emotional wellbeing, language communication and cultural support. Given the support of Japanese companions, the client was able to express her needs and health symptoms effectively and the staff were subsequently able to provide culturally-sensitive care. The second theme that emerged was the perceived benefits received by the staff. The companion program improved the staff's ability to provide quality care for the resident. This study implies that culturally responsive companion programs may benefit foreign-born older individuals in improving their wellbeing in long-term care settings.
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- 2021
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47. Cypro-Minoan and its potmarks and vessel inscriptions as challenges to Aegean scripts corpora
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Cassandra M. Donnelly
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- 2022
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48. Hunting for the cause: Evidence for prion-like mechanisms in Huntington’s disease
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Kirby M, Donnelly, Cevannah M, Coleman, Madison L, Fuller, Victoria L, Reed, Dayna, Smerina, David S, Tomlinson, and Margaret M Panning, Pearce
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General Neuroscience - Abstract
The hypothesis that pathogenic protein aggregates associated with neurodegenerative diseases spread from cell-to-cell in the brain in a manner akin to infectious prions has gained substantial momentum due to an explosion of research in the past 10–15 years. Here, we review current evidence supporting the existence of prion-like mechanisms in Huntington’s disease (HD), an autosomal dominant neurodegenerative disease caused by expansion of a CAG repeat tract in exon 1 of the huntingtin (HTT) gene. We summarize information gained from human studies and in vivo and in vitro models of HD that strongly support prion-like features of the mutant HTT (mHTT) protein, including potential involvement of molecular features of mHTT seeds, synaptic structures and connectivity, endocytic and exocytic mechanisms, tunneling nanotubes, and nonneuronal cells in mHTT propagation in the brain. We discuss mechanisms by which mHTT aggregate spreading and neurotoxicity could be causally linked and the potential benefits of targeting prion-like mechanisms in the search for new disease-modifying therapies for HD and other fatal neurodegenerative diseases.
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- 2022
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49. Statins versus Nonstatin Use in Patients with Chronic Subdural Hematomas Treated with Middle Meningeal Artery Embolization Alone - A Single-Center Experience
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Steven B. Housley, Andre Monteiro, Brianna M. Donnelly, Wasiq I. Khawar, Manhal Siddiqi, Alexander G. Fritz, Muhammad Waqas, Justin M. Cappuzzo, Kenneth V. Snyder, Adnan H. Siddiqui, Elad I. Levy, and Jason M. Davies
- Subjects
Surgery ,Neurology (clinical) - Abstract
Statins have been reported to reduce the rates of recurrence and improve the resolution of chronic subdural hematomas (cSDHs) treated surgically or conservatively. No studies have investigated the effect of statins in patients treated with middle meningeal artery embolization.We performed a retrospective search of our cSDH database to identify patients treated with middle meningeal artery embolization alone. Only patients with at least 1 noncontrast computed tomography scan obtained 3-12 weeks after embolization were included. Hematoma volumes were measured at baseline and last noncontrast computed tomography available. The volumes, volume reduction, speed of resolution, and recurrence were compared between patients already receiving statin therapy when admitted and those who were not.Forty-six patients with 50 cSDHs were included (statins, 17 patients with 18 cSDHs vs. nonstatins, 29 patients with 32 cSDHs). The statin group had a significantly higher rate of hyperlipidemia (statin, 64.7% vs. nonstatin, 31%, P = 0.03) but similar demographics, remaining comorbidities, medications, and hematoma thickness, axial and coronal lengths, and baseline volumes. The time between procedure and last noncontrast computed tomography scan was similar between groups. There were no differences between the groups regarding volume reduction, final volume, speed of resolution, complete resolution, and recurrence.Patients treated with middle meningeal artery embolization alone who were on statin therapy had no differences in cSDH resolution or recurrence compared to those who were not on statin therapy. It is possible that the anti-inflammatory effects of statins may not be relevant when supply to the dura is interrupted by treatment with embolization.
- Published
- 2022
50. Treatment of ruptured intracranial aneurysms using the novel generation of flow-diverters with surface modification: A systematic review and meta-analysis
- Author
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Andre Monteiro, Asham Khan, Brianna M Donnelly, Cathleen C Kuo, Samantha M Burke, Muhammad Waqas, Steven B Housley, Justin M Cappuzzo, Jason M Davies, Kenneth V Snyder, Elad I Levy, and Adnan H Siddiqui
- Subjects
General Medicine - Abstract
Background Surface modification of flow diverters (FDs) has been explored as a solution for reducing thrombotic risk of these devices, without necessarily using dual antiplatelet therapy (DAPT). If effective, this could pose a promising alternative for treatment of ruptured aneurysms not amenable to other modalities. Methods We performed a comprehensive search of PubMed, MEDLINE, and Embase databases following Preferred Reporting Items for Systematic reviews and Meta-analyzes guidelines. We included articles reporting use of surface-modified FDs for treatment of ruptured aneurysms. Demographics, subarachnoid hemorrhage (SAH) severity, aneurysm characteristics, devices used, periprocedural complications, angiographic outcomes, and mortality were extracted for sample size-based weighted analysis. Results Six studies comprising 59 patients with 64 aneurysms were included. Mean patient age was 56.6 ± 6.3 years and 60.6% (95% confidence interval [CI], 46.7–72.9%) were women. The anterior circulation was the location in 60.4% (95%CI, 45.5–73.5%) of aneurysms; 41.8% of the aneurysms were saccular (95%CI, 29.3–55.4%), 16.7% were fusiform (95%CI, 8.3–30.8%), 29.9% were dissecting (95%CI, 12.8–55.4%), 24.4% were blood-blister (95%CI, 15.2–36.7%), and 5.7% were mycotic (95%CI, 2–15.1%). Poor SAH grade was reported in 46.9% (95%CI, 33.3–60.9%). Adjunctive coiling was used in 33.2% (95%CI, 12.4–63.6%). Periprocedural thromboembolic and hemorrhagic complications occurred in 20% (95%CI, 7.1–45.1%) and 8.8% (95%CI, 3.7–19.5%), respectively. Complete occlusion was achieved in 76.4% (95%CI, 58.1–88.3%); no retreatments during follow-up were reported. Overall mortality was 15.1% (95%CI, 7.7–27.6%). There were no differences between single antiplatelet therapy (SAPT) and DAPT regimens with respect to periprocedural thromboembolic complications ( P = 0.09), hemorrhagic ( P = 0.834) complications, and mortality ( P = 0.312). Conclusion Surface-modified FD treatment of ruptured aneurysms resulted in high rates of thromboembolic complications and acceptable rates of hemorrhagic complications. A considerable proportion of aneurysms were nonsaccular. Rates of complete occlusion were high and retreatment were low. Importantly, no statistically significant difference was found between SAPT and DAPT with respect to complications and mortality.
- Published
- 2022
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