1. Comparison of serum fractionation methods by data independent label-free proteomics
- Author
-
D. Baiwir, G. Mazzucchelli, N. Smargiasso, F. Quesada-Calvo, E. De Pauw, M. Malaise, E. Louis, and M.-A. Meuwis
- Subjects
Genetics ,QH426-470 - Abstract
Off-line sample prefractionations applied prior to biomarker discovery proteomics are options to enable more protein identifications and detect low-abundance proteins. This work compared five commercial methods efficiency to raw serum analysis using label-free proteomics. The variability of the protein quantities determined for each process was similar to the unprefractionated serum. A 49% increase in protein identifications and 12.2% of reliable quantification were obtained. A 61 times lower limit of protein quantitation was reached compared to protein concentrations observed in raw serum. The concentrations of detected proteins were confronted to estimated reference values. Keywords: Serum prefractionation, Repeatability, Label-free proteomics, Data independent, Depletion, Equalization
- Published
- 2015
- Full Text
- View/download PDF