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Biomedical literature is often written in highly specialized language, posing significant comprehension challenges for non-experts. Automatic text simplification (ATS) offers a solution by making such texts more accessible while preserving critical information. However, evaluating ATS for biomedical texts is still challenging due to the limitations of existing evaluation metrics. General-domain metrics like SARI, BLEU, and ROUGE focus on surface-level text features, and readability metrics like FKGL and ARI fail to account for domain-specific terminology or assess how well the simplified text conveys core meanings (gist). To address this, we introduce SciGisPy, a novel evaluation metric inspired by Gist Inference Score (GIS) from Fuzzy-Trace Theory (FTT). SciGisPy measures how well a simplified text facilitates the formation of abstract inferences (gist) necessary for comprehension, especially in the biomedical domain. We revise GIS for this purpose by introducing domain-specific enhancements, including semantic chunking, Information Content (IC) theory, and specialized embeddings, while removing unsuitable indexes. Our experimental evaluation on the Cochrane biomedical text simplification dataset demonstrates that SciGisPy outperforms the original GIS formulation, with a significant increase in correctly identified simplified texts (84% versus 44.8%). The results and a thorough ablation study confirm that SciGisPy better captures the essential meaning of biomedical content, outperforming existing approaches., Comment: Accepted by he Third Workshop on Text Simplification, Accessibility and Readability

Medical text simplification is crucial for making complex biomedical literature more accessible to non-experts. Traditional methods struggle with the specialized terms and jargon of medical texts, lacking the flexibility to adapt the simplification process dynamically. In contrast, recent advancements in large language models (LLMs) present unique opportunities by offering enhanced control over text simplification through iterative refinement and collaboration between specialized agents. In this work, we introduce the Society of Medical Simplifiers, a novel LLM-based framework inspired by the "Society of Mind" (SOM) philosophy. Our approach leverages the strengths of LLMs by assigning five distinct roles, i.e., Layperson, Simplifier, Medical Expert, Language Clarifier, and Redundancy Checker, organized into interaction loops. This structure allows the agents to progressively improve text simplification while maintaining the complexity and accuracy of the original content. Evaluations on the Cochrane text simplification dataset demonstrate that our framework is on par with or outperforms state-of-the-art methods, achieving superior readability and content preservation through controlled simplification processes., Comment: Accepted by Third Workshop on Text Simplification, Accessibility and Readability

Large Language Models (LLMs), such as GPT-4, StarCoder, and CodeLlama, are transforming the way developers approach programming by automatically generating code based on given natural language descriptions. Despite advancements, generating syntactically and semantically correct code remains challenging, especially for complex programming tasks. Existing approaches typically generate multiple candidate solutions using LLMs to increase the likelihood of producing correct code. However, selecting the correct code from these candidates-a process known as code ranking-remains a major challenge. Current research on code ranking can be categorized into execution-based and non-execution-based methods. Execution-based methods, although effective, encounter notable limitations, such as scarcity of quality unit tests and security risks. Non-execution-based methods like CodeRanker, which rely solely on classification labels to train a code ranker, struggle to capture subtle errors and provide detailed error insights. Recognizing the strengths and limitations of both approaches, we propose a new method. The key insight of our work is that an effective code ranker is expected to truly comprehend the underlying causes of erroneous code, as relying solely on classification labels is insufficient. Inspired by this, this paper puts forward RankEF, an innovative approach for code ranking that leverages execution feedback. RankEF employs multi-task learning to integrate code classification with execution feedback generation. This approach enables the model to understand the reasons behind incorrect code, distinguishing between correct and incorrect solutions without the need to execute the code during the ranking phase. Experiments on three code generation benchmarks demonstrate that RankEF significantly outperforms the state-of-the-art CodeRanker., Comment: Accepted by the 39th IEEE/ACM International Conference on Automated Software Engineering (ASE 2024)

As Moore's Law gains diminish, software performance and efficiency become increasingly vital. Optimizing code efficiency is challenging, even for professional programmers. However, related research remains relatively scarce, and rigorously assessing models' abilities to optimize code efficiency is fraught with difficulties. In response to this challenge, we first conduct an in-depth analysis of "code patterns" in the model training dataset, meticulously exploring human-written code. Secondly, we define a task for optimizing code efficiency and introduce the Automatic Code Efficiency Optimization Benchmark (ACEOB), which consists of 95,359 pairs of efficient-inefficient code aimed at assessing code efficiency optimization capabilities. To our knowledge, ACEOB is the first dataset specifically targeting Python code efficiency optimization. To evaluate models' ability in optimizing code efficiency, we propose two new metrics: the Isomorphic Optimal Comparison CodeBLEU (IOCCB) metric and the Normalized Performance Index (NPI) metric, to assess the efficiency of model-generated code. We also evaluate several advanced code models, such as PolyCoder and CodeT5, after fine-tuning them on ACEOB and demonstrate that the efficiency of each model improves after introducing the NPI filter. However, it was observed that even ChatGPT does not perform optimally in code efficiency optimization tasks.

Context: With the waning of Moore's Law, the software industry is placing increasing importance on finding alternative solutions for continuous performance enhancement. The significance and research results of software performance optimization have been on the rise in recent years, especially with the advancement propelled by Large Language Models(LLMs). However, traditional strategies for rectifying performance flaws have shown significant limitations at the competitive code efficiency optimization level, and research on this topic is surprisingly scarce. Objective: This study aims to address the research gap in this domain, offering practical solutions to the various challenges encountered. Specifically, we have overcome the constraints of traditional performance error rectification strategies and developed a Language Model (LM) tailored for the competitive code efficiency optimization realm. Method: We introduced E-code, an advanced program synthesis LM. Inspired by the recent success of expert LMs, we designed an innovative structure called the Expert Encoder Group. This structure employs multiple expert encoders to extract features tailored for different input types. We assessed the performance of E-code against other leading models on a competitive dataset and conducted in-depth ablation experiments. Results: Upon systematic evaluation, E-code achieved a 54.98% improvement in code efficiency, significantly outperforming other advanced models. In the ablation experiments, we further validated the significance of the expert encoder group and other components within E-code. Conclusion: The research findings indicate that the expert encoder group can effectively handle various inputs in efficiency optimization tasks, significantly enhancing the model's performance.

Large Language Models (LLMs) have recently made significant advances in code generation through the 'Chain-of-Thought' prompting technique. This technique empowers the model to autonomously devise "solution plans" to tackle intricate programming challenges, thereby improving its performance in code generation. Nevertheless, smaller models have been struggling to keep up with LLMs in deducing these plans, adversely affecting their code generation capabilities. Given the considerable size and associated deployment costs, along with concerns about data security, many teams opt for deploying smaller models for code generation. Consequently, there arises a compelling need for transferring LLMs' code generation reasoning abilities to the smaller models. In this paper, we propose the CodePLAN framework, which aims to transfer LLMs' reasoning capabilities to smaller models through distillation. We adopt a multi-task learning approach, jointly undertaking code generation and solution plan generation tasks, to enhance the code generation capabilities of the smaller model. To ensure the superior quality of the solution plans, we advocate for the utilization of backward reasoning and plan sampling strategies. Our experiments show that in comparison to the conventional fine-tuning approach, our approach improves the smaller model's code generation performance (measured in pass@1 metric) by over 130% on the challenging APPS benchmark., Comment: Accepted for LREC-COLING 2024

Integrated quantum light source is increasingly desirable in large-scale quantum information processing.~Despite recent remarkable advances, new material platform is constantly being explored for the fully on-chip integration of quantum light generation, active and passive manipulation, and detection. Here, for the first time, we demonstrate a gallium nitride (GaN) microring based quantum light generation in the telecom C-band, which has potential towards the monolithic integration of quantum light source.~In our demonstration, the GaN microring has a free spectral range of 330 GHz and a near-zero anomalous dispersion region of over 100 nm. The generation of energy-time entangled photon pair is demonstrated with a typical raw two-photon interference visibility of 95.5$\pm$6.5%, which is further configured to generate heralded single photon with a typical heralded second-order auto-correlation $g^{(2)}_{H}(0)$ of 0.045$\pm$0.001. Our results pave the way for developing chip-scale quantum photonic circuit.

Large Language Models (LLMs) perform well on basic programming problems. However, they encounter challenges when dealing with complex tasks involving the use of diverse algorithmic and data structure skills, particularly programming competition-level problems. Notably, ChatGPT exhibits proficient performance on problems it has encountered during its pre-training phase, but this performance deteriorates when faced with novel problems. Consequently, enhancing the ability of LLMs to address unfamiliar problems has emerged as a pivotal research focus. The problem-solving process of LLMs mirrors human programmers' approach to a certain extent. When confronted with new programming tasks, human programmers engage in task planning and code writing with the previously acquired knowledge about algorithms and data structures. Despite having learned such knowledge, LLMs struggle to effectively apply it when faced with specific new problems. To address this issue, we constructed a novel dataset, CodeF, which contains a portion of programming problems that ChatGPT has not previously encountered. Furthermore, we developed a Knowledge Library tailored for Python programming contest problems and introduced the concept of Knowledge-Aware Code Generation (KareCoder). KareCoder bolsters the models' understanding and problem-solving capabilities by integrating prompt and knowledge from the library into the LLMs' code generation reasoning process, especially on Pass@1 metrics. Upon testing on the CodeF and APPS datasets, KareCoder demonstrated outstanding performance in handling novel problems previously unencountered by LLMs. In contrast with the code directly generated by ChatGPT, KareCoder achieved a relative improvement of 23.3% on the Pass@1 metric on the CodeF post2021-9 dataset. Additionally, it performs well compared to other methods when dealing with problems that LLMs have previously encountered., Comment: Accepted in ICPC 2024

Code completion aims to enhance programming productivity by predicting potential code based on the current programming context. Recently, pretrained language models (LMs) have become prominent in this field. Various approaches have been proposed to fine-tune LMs using supervised fine-tuning (SFT) techniques for code completion. However, the inherent exposure bias of these models can cause errors to accumulate early in the sequence completion, leading to even more errors in subsequent completions. To address this problem, deep reinforcement learning (DRL) is an alternative technique for fine-tuning LMs for code completion, which can improve the generalization capabilities and overall performance. Nevertheless, integrating DRL-based strategies into code completion faces two major challenges: 1) The dynamic nature of the code context requires the completion model to quickly adapt to changes, which poses difficulties for conventional DRL strategies that focus on delayed rewarding of the final code state. 2) It is difficult to evaluate the correctness of partial code, thus the reward redistribution-based strategies cannot be adapted to code completion. To tackle these challenges, we propose IRCoCo, a code completion-specific DRL-based fine-tuning framework. This framework is designed to provide immediate rewards as feedback for detecting dynamic context changes arising from continuous edits during code completion. With the aid of immediate feedback, the fine-tuned LM can gain a more precise understanding of the current context, thereby enabling effective adjustment of the LM and optimizing code completion in a more refined manner. Experimental results demonstrate that fine-tuning pretrained LMs with IRCoCo leads to significant improvements in the code completion task, outperforming both SFT-based and other DRL-based baselines., Comment: Accepted for the 32nd ACM Symposium on the Foundations of Software Engineering (FSE 2024)

We introduce TACO, an open-source, large-scale code generation dataset, with a focus on the optics of algorithms, designed to provide a more challenging training dataset and evaluation benchmark in the field of code generation models. TACO includes competition-level programming questions that are more challenging, to enhance or evaluate problem understanding and reasoning abilities in real-world programming scenarios. There are 25433 and 1000 coding problems in training and test set, as well as up to 1.55 million diverse solution answers. Moreover, each TACO problem includes several fine-grained labels such as task topics, algorithms, programming skills, and difficulty levels, providing a more precise reference for the training and evaluation of code generation models. The dataset and evaluation scripts are available on Hugging Face Hub (https://huggingface.co/datasets/BAAI/TACO) and Github (https://github.com/FlagOpen/TACO).

Multi-wavelength quantum light sources, especially at telecom band, are extremely desired in quantum information technology. Despite recent impressive advances, such a quantum light source with high quality remains challenging. Here we demonstrate a multi-wavelength quantum light source using a silicon nitride micro-ring with a free spectral range of 200 GHz. The generation of eight pairs of correlated photons is ensured in a wavelength range of 25.6 nm. With device optimization and noise-rejecting filters, our source enables the generation of heralded single-photons - at a rate of 62 kHz with $g^{(2)}_{h}(0)=0.014\pm0.001$, and the generation of energy-time entangled photons - with a visibility of $99.39\pm 0.45\%$ in the Franson interferometer. These results, at room temperature and telecom wavelength, in a CMOS compatible platform, represent an important step towards integrated quantum light devices for the quantum networks., Comment: 7 pages, 4 figures

Background: Code summarization automatically generates the corresponding natural language descriptions according to the input code. Comprehensiveness of code representation is critical to code summarization task. However, most existing approaches typically use coarse-grained fusion methods to integrate multi-modal features. They generally represent different modalities of a piece of code, such as an Abstract Syntax Tree (AST) and a token sequence, as two embeddings and then fuse the two ones at the AST/code levels. Such a coarse integration makes it difficult to learn the correlations between fine-grained code elements across modalities effectively. Aims: This study intends to improve the model's prediction performance for high-quality code summarization by accurately aligning and fully fusing semantic and syntactic structure information of source code at node/token levels. Method: This paper proposes a Multi-Modal Fine-grained Feature Fusion approach (MMF3) for neural code summarization. We introduce a novel fine-grained fusion method, which allows fine-grained fusion of multiple code modalities at the token and node levels. Specifically, we use this method to fuse information from both token and AST modalities and apply the fused features to code summarization. Results: We conduct experiments on one Java and one Python datasets, and evaluate generated summaries using four metrics. The results show that: 1) the performance of our model outperforms the current state-of-the-art models, and 2) the ablation experiments show that our proposed fine-grained fusion method can effectively improve the accuracy of generated summaries. Conclusion: MMF3 can mine the relationships between crossmodal elements and perform accurate fine-grained element-level alignment fusion accordingly. As a result, more clues can be provided to improve the accuracy of the generated code summaries., Comment: 12 pages, 5 figures

Low-light image enhancement is a classical computer vision problem aiming to recover normal-exposure images from low-light images. However, convolutional neural networks commonly used in this field are good at sampling low-frequency local structural features in the spatial domain, which leads to unclear texture details of the reconstructed images. To alleviate this problem, we propose a novel module using the Fourier coefficients, which can recover high-quality texture details under the constraint of semantics in the frequency phase and supplement the spatial domain. In addition, we design a simple and efficient module for the image spatial domain using dilated convolutions with different receptive fields to alleviate the loss of detail caused by frequent downsampling. We integrate the above parts into an end-to-end dual branch network and design a novel loss committee and an adaptive fusion module to guide the network to flexibly combine spatial and frequency domain features to generate more pleasing visual effects. Finally, we evaluate the proposed network on public benchmarks. Extensive experimental results show that our method outperforms many existing state-of-the-art ones, showing outstanding performance and potential.

In this perspective article, we discuss the challenges of imaging assemblies of particles in three dimensions. Starting from a brief motivation for the investigation of particulate materials, we provide an overview of experimental approaches developed for imaging particles. We list the challenges and existing solutions associated with X-ray tomography, one of the standard methods to study statics. Subsequently, we discuss challenges and opportunities arising from emerging new techniques such as radar tracking and `smart' tracers for exploring granular dynamics. We close with a tentative view on the outstanding problems and potential solutions in the future., Comment: 19 pages, 5 figures

Abstract syntax trees (ASTs) play a crucial role in source code representation. However, due to the large number of nodes in an AST and the typically deep AST hierarchy, it is challenging to learn the hierarchical structure of an AST effectively. In this paper, we propose HELoC, a hierarchical contrastive learning model for source code representation. To effectively learn the AST hierarchy, we use contrastive learning to allow the network to predict the AST node level and learn the hierarchical relationships between nodes in a self-supervised manner, which makes the representation vectors of nodes with greater differences in AST levels farther apart in the embedding space. By using such vectors, the structural similarities between code snippets can be measured more precisely. In the learning process, a novel GNN (called Residual Self-attention Graph Neural Network, RSGNN) is designed, which enables HELoC to focus on embedding the local structure of an AST while capturing its overall structure. HELoC is self-supervised and can be applied to many source code related downstream tasks such as code classification, code clone detection, and code clustering after pre-training. Our extensive experiments demonstrate that HELoC outperforms the state-of-the-art source code representation models., Comment: Accepted by ICPC 2022

Source code summarization aims to generate natural language descriptions of code snippets. Many existing studies learn the syntactic and semantic knowledge of code snippets from their token sequences and Abstract Syntax Trees (ASTs). They use the learned code representations as input to code summarization models, which can accordingly generate summaries describing source code. Traditional models traverse ASTs as sequences or split ASTs into paths as input. However, the former loses the structural properties of ASTs, and the latter destroys the overall structure of ASTs. Therefore, comprehensively capturing the structural features of ASTs in learning code representations for source code summarization remains a challenging problem to be solved. In this paper, we propose M2TS, a Multi-scale Multi-modal approach based on Transformer for source code Summarization. M2TS uses a multi-scale AST feature extraction method, which can extract the structures of ASTs more completely and accurately at multiple local and global levels. To complement missing semantic information in ASTs, we also obtain code token features, and further combine them with the extracted AST features using a cross modality fusion method that not only fuses the syntactic and contextual semantic information of source code, but also highlights the key features of each modality. We conduct experiments on two Java and one Python datasets, and the experimental results demonstrate that M2TS outperforms current state-of-the-art methods. We release our code at https://github.com/TranSMS/M2TS., Comment: Accepted by ICPC 2022

Quantum networks play an extremely important role in quantum information science, with application to quantum communication, computation, metrology and fundamental tests. One of the key challenges for implementing a quantum network is to distribute entangled flying qubits to spatially separated nodes, at which quantum interfaces or transducers map the entanglement onto stationary qubits. The stationary qubits at the separated nodes constitute quantum memories realized in matter while the flying qubits constitute quantum channels realized in photons. Dedicated efforts around the world for more than twenty years have resulted in both major theoretical and experimental progress towards entangling quantum nodes and ultimately building a global quantum network. Here, we review the development of quantum networks and the experimental progress over the past two decades leading to the current state of the art for generating entanglement of quantum nodes based on various physical systems such as single atoms, cold atomic ensembles, trapped ions, diamonds with Nitrogen-Vacancy centers, solid-state host doped with rare-earth ions, etc. Along the way we discuss the merits and compare the potential of each of these systems towards realizing a quantum network., Comment: 71 pages, 16 figures, 1 table, accepted by Laser & Photonics Reviews

Source code can be parsed into the abstract syntax tree (AST) based on defined syntax rules. However, in pre-training, little work has considered the incorporation of tree structure into the learning process. In this paper, we present TreeBERT, a tree-based pre-trained model for improving programming language-oriented generation tasks. To utilize tree structure, TreeBERT represents the AST corresponding to the code as a set of composition paths and introduces node position embedding. The model is trained by tree masked language modeling (TMLM) and node order prediction (NOP) with a hybrid objective. TMLM uses a novel masking strategy designed according to the tree's characteristics to help the model understand the AST and infer the missing semantics of the AST. With NOP, TreeBERT extracts the syntactical structure by learning the order constraints of nodes in AST. We pre-trained TreeBERT on datasets covering multiple programming languages. On code summarization and code documentation tasks, TreeBERT outperforms other pre-trained models and state-of-the-art models designed for these tasks. Furthermore, TreeBERT performs well when transferred to the pre-trained unseen programming language., Comment: Accepted by UAI2021

The problem of code generation from textual program descriptions has long been viewed as a grand challenge in software engineering. In recent years, many deep learning based approaches have been proposed, which can generate a sequence of code from a sequence of textual program description. However, the existing approaches ignore the global relationships among API methods, which are important for understanding the usage of APIs. In this paper, we propose to model the dependencies among API methods as an API dependency graph (ADG) and incorporate the graph embedding into a sequence-to-sequence (Seq2Seq) model. In addition to the existing encoder-decoder structure, a new module named ``embedder" is introduced. In this way, the decoder can utilize both global structural dependencies and textual program description to predict the target code. We conduct extensive code generation experiments on three public datasets and in two programming languages (Python and Java). Our proposed approach, called ADG-Seq2Seq, yields significant improvements over existing state-of-the-art methods and maintains its performance as the length of the target code increases. Extensive ablation tests show that the proposed ADG embedding is effective and outperforms the baselines.