1. Predicting protein interactions of the kinase Lck critical to T cell modulation.
- Author
-
Gao M and Skolnick J
- Subjects
- Humans, Leukocyte Common Antigens metabolism, Leukocyte Common Antigens chemistry, Leukocyte Common Antigens genetics, Models, Molecular, Antigens, CD metabolism, Antigens, CD chemistry, Antigens, CD genetics, Binding Sites, Signal Transduction, Protein Interaction Domains and Motifs, Lymphocyte Activation, Phosphotyrosine metabolism, Lymphocyte Specific Protein Tyrosine Kinase p56(lck) metabolism, Lymphocyte Specific Protein Tyrosine Kinase p56(lck) chemistry, T-Lymphocytes metabolism, Protein Binding
- Abstract
Protein-protein interactions (PPIs) play pivotal roles in directing T cell fate. One key player is the non-receptor tyrosine protein kinase Lck that helps to transduce T cell activation signals. Lck is mediated by other proteins via interactions that are inadequately understood. Here, we use the deep learning method AF2Complex to predict PPIs involving Lck, by screening it against ∼1,000 proteins implicated in immune responses, followed by extensive structural modeling for selected interactions. Remarkably, we describe how Lck may be specifically targeted by a palmitoyltransferase using a phosphotyrosine motif. We uncover "hotspot" interactions between Lck and the tyrosine phosphatase CD45, leading to a significant conformational shift of Lck for activation. Lastly, we present intriguing interactions between the phosphotyrosine-binding domain of Lck and the cytoplasmic tail of the immune checkpoint LAG3 and propose a molecular mechanism for its inhibitory role. Together, this multifaceted study provides valuable insights into T cell regulation and signaling., Competing Interests: Declaration of interests M.G. is a stockholder at AgnistaBio, Inc., (Copyright © 2024 Elsevier Inc. All rights reserved.)
- Published
- 2024
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