1. Genome-Wide Association Study Identification of Novel Loci Associated with Airway Responsiveness in Chronic Obstructive Pulmonary Disease
- Author
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Hansel, N.N., Pare, P.D., Rafaels, N., Sin, D.D., Sandford, A., Daley, D., Vergara, C., Huang, L.L., Elliott, W.M., Pascoe, C.D., Arsenault, B.A., Postma, D.S., Boezen, H.M., Bosse, Y., Berge, M. van den, Hiemstra, P.S., Cho, M.H., Litonjua, A.A., Sparrow, D., Ober, C., Wise, R.A., Connett, J., Neptune, E.R., Beaty, T.H., Ruczinski, I., Mathias, R.A., Barnes, K.C., Lung Hlth Study, Groningen Research Institute for Asthma and COPD (GRIAC), and Life Course Epidemiology (LCE)
- Subjects
Risk ,Pulmonary and Respiratory Medicine ,Pathology ,medicine.medical_specialty ,Quantitative Trait Loci ,Clinical Biochemistry ,Genome-wide association study ,Quantitative trait locus ,LUNG HEALTH ,VARIANTS ,delta-sarcoglycan ,EARLY INTERVENTION ,eQTL ,Polymorphism, Single Nucleotide ,bronchial responsiveness ,Pulmonary Disease, Chronic Obstructive ,Sarcoglycans ,airway reactivity ,Genotype ,medicine ,Humans ,COPD ,Genetic Predisposition to Disease ,CORONARY-HEART-DISEASE ,1000 Genomes Project ,Molecular Biology ,Original Research ,Lung ,Myosin Heavy Chains ,business.industry ,SMOOTH-MUSCLE ,Cell Biology ,SMOKING-CESSATION ,medicine.disease ,respiratory tract diseases ,medicine.anatomical_structure ,Expression quantitative trait loci ,Immunology ,BRONCHIAL HYPERRESPONSIVENESS ,RISK-FACTORS ,METHACHOLINE ,business ,Imputation (genetics) ,Genome-Wide Association Study - Abstract
Increased airway responsiveness is linked to lung function decline and mortality in subjects with chronic obstructive pulmonary disease (COPD); however, the genetic contribution to airway responsiveness remains largely unknown. A genome-wide association study (GWAS) was performed using the Illumina (San Diego, CA) Human660W-Quad BeadChip on European Americans with COPD from the Lung Health Study. Linear regression models with correlated meta-analyses, including data from baseline (n = 2,814) and Year 5 (n = 2,657), were used to test for common genetic variants associated with airway responsiveness. Genotypic imputation was performed using reference 1000 Genomes Project data. Expression quantitative trait loci (eQTL) analyses in lung tissues were assessed for the top 10 markers identified, and immunohistochemistry assays assessed protein staining for SGCD and MYH15. Four genes were identified within the top 10 associations with airway responsiveness. Markers on chromosome 9p21.2 flanked by LINGO2 met a predetermined threshold of genome-wide significance (P 9.57 × 10(-8)). Markers on chromosomes 3q13.1 (flanked by MYH15), 5q33 (SGCD), and 6q21 (PDSS2) yielded suggestive evidence of association (9.57 × 10(-8) P ≤ 4.6 × 10(-6)). Gene expression studies in lung tissue showed single nucleotide polymorphisms on chromosomes 5 and 3 to act as eQTL for SGCD (P = 2.57 × 10(-9)) and MYH15 (P = 1.62 × 10(-6)), respectively. Immunohistochemistry confirmed localization of SGCD protein to airway smooth muscle and vessels and MYH15 to airway epithelium, vascular endothelium, and inflammatory cells. We identified novel loci associated with airway responsiveness in a GWAS among smokers with COPD. Risk alleles on chromosomes 5 and 3 acted as eQTLs for SGCD and MYH15 messenger RNA, and these proteins were expressed in lung cells relevant to the development of airway responsiveness.
- Published
- 2015
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