104 results on '"Lukas, T J"'
Search Results
2. Mutant Analysis Approaches to Understanding Calcium Signal Transduction Through Calmodulin and Calmodulin Regulated Enzymes
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Haiech, J., Kilhoffer, M.-C., Craig, T. A., Lukas, T. J., Wilson, E., Guerra-Santos, L., Watterson, D. M., Pochet, Roland, editor, Lawson, D. Eric M., editor, and Heizmann, Claus W., editor
- Published
- 1990
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3. Structural characterization of the recognition site for platelet receptors on human fibrinogen
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Hawiger, J., primary, Kloczewiak, M., additional, Timmons, S., additional, and Lukas, T. J., additional
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- 1985
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4. Effect of fluoxetine on disease progression in a mouse model of ALS
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Koschnitzky, J. E., primary, Quinlan, K. A., additional, Lukas, T. J., additional, Kajtaz, E., additional, Kocevar, E. J., additional, Mayers, W. F., additional, Siddique, T., additional, and Heckman, C. J., additional
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- 2014
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5. Characterization of a Low Molecular Mass Autophosphorylating Protein in Cultured Sugarcane Cells and Its Identification as a Nucleoside Diphosphate Kinase
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Moisyadi, S., primary, Dharmasiri, S., additional, Harrington, H. M., additional, and Lukas, T. J., additional
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- 1994
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6. Inositol polyphosphate receptor and clathrin assembly protein AP-2 are related proteins that form potassium-selective ion channels in planar lipid bilayers.
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Timerman, A P, primary, Mayrleitner, M M, additional, Lukas, T J, additional, Chadwick, C C, additional, Saito, A, additional, Watterson, D M, additional, Schindler, H, additional, and Fleischer, S, additional
- Published
- 1992
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7. Direct identification of residues of the epidermal growth factor receptor in close proximity to the amino terminus of bound epidermal growth factor.
- Author
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Woltjer, R. L., primary, Lukas, T. J., additional, and Staros, J. V., additional
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- 1992
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8. Structure and expression of a calcium-binding protein gene contained within a calmodulin-regulated protein kinase gene.
- Author
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Collinge, M, primary, Matrisian, P E, additional, Zimmer, W E, additional, Shattuck, R L, additional, Lukas, T J, additional, Van Eldik, L J, additional, and Watterson, D M, additional
- Published
- 1992
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9. Restoration of the calcium binding activity of mutant calmodulins toward normal by the presence of a calmodulin binding structure
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Haiech, J, primary, Kilhoffer, M C, additional, Lukas, T J, additional, Craig, T A, additional, Roberts, D M, additional, and Watterson, D M, additional
- Published
- 1991
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10. Use of DNA sequence and mutant analyses and antisense oligodeoxynucleotides to examine the molecular basis of nonmuscle myosin light chain kinase autoinhibition, calmodulin recognition, and activity.
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Shoemaker, M O, primary, Lau, W, additional, Shattuck, R L, additional, Kwiatkowski, A P, additional, Matrisian, P E, additional, Guerra-Santos, L, additional, Wilson, E, additional, Lukas, T J, additional, Van Eldik, L J, additional, and Watterson, D M, additional
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- 1990
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11. A knowledge-based experimental design system for nucleic acid engineering
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Jiang, K., primary, Heng, J. Z, additional, Higgins, S. B., additional, Watterson, D. M., additional, Craig, T. A., additional, Lukas, T. J., additional, and Eldik, L. J. Van, additional
- Published
- 1990
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12. Computational and site-specific mutagenesis analyses of the asymmetric charge distribution on calmodulin.
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Weber, P. C., Lukas, T. J., Craig, T. A., Wilson, E., King, M. M., Kwiatkowski, A. P., and Watterson, D. Martin
- Published
- 1989
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13. Identification of Novel Classes of Protein Kinase Inhibitors Using Combinatorial Peptide Chemistry Based on Functional Genomics Knowledge
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Lukas, T. J., Mirzoeva, S., Slomczynska, U., and Watterson, D. M.
- Abstract
A discovery approach based on an intramolecular inhibitory mechanism was applied to a prototype calmodulin (CaM)-regulated protein kinase in order to demonstrate a proof-of-principle for the development of selective inhibitors. The overall approach used functional genomics analysis of myosin light chain kinase (MLCK) to identify short autoinhibitory sequences that lack CaM recognition activity, followed by recursive combinatorial peptide library production and comparative activity screens. Peptide
18 (Arg-Lys-Lys-Tyr-Lys-Tyr-Arg-Arg-Lys-NH2 ), one of several selective inhibitors discovered, has an IC50 = 50 nM for MLCK, inhibits CaM kinase II only at 4000-fold higher concentrations, and does not inhibit cyclic AMP-dependent protein kinase. Analogues of peptide18 containing conformationally constrained cis-4-aminocyclohexanecarboxylic acid retained affinity and selectivity. The inhibitors add to the armamentarium available for the deconvolution of complex signal transduction pathways and their relationship to homeostasis and disease, and the approach is potentially applicable to enzymes in which the catalytic and regulatory domains are found within the same open reading frame of a cDNA.- Published
- 1999
14. Identification of residues in the nucleotide binding site of the epidermal growth factor receptor/kinase.
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Russo, M W, Lukas, T J, Cohen, S, and Staros, J V
- Abstract
We have purified the epidermal growth factor receptor/kinase from A431 membrane vesicles which had been affinity labeled with the ATP analog, 5'-p-fluorosulfonylbenzoyl[8-14C]adenosine. The resulting purified, affinity labeled receptor/kinase preparation has been subjected to reduction and carboxymethylation followed by tryptic digestion. From this digest, we have isolated and sequenced the tryptic peptide containing the major site of labeling by the ATP analog. The sequence of this peptide is Ile-Pro-Val-Ala-Ile-X-Glu-Leu, where X corresponds to Lys 721 of the derived sequence of the EGF receptor/kinase.
- Published
- 1985
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15. In vivo mutations of calmodulin: a mutant Paramecium with altered ion current regulation has an isoleucine-to-threonine change at residue 136 and an altered methylation state at lysine residue 115.
- Author
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Lukas, T J, Wallen-Friedman, M, Kung, C, and Watterson, D M
- Abstract
The Paramecium tetraurelia mutants termed pantophobiacs have altered behavior due to perturbed calcium activation of ion channel activity. The calmodulin from pantophobiac A1 (pntA1) was shown in previous studies to have a single amino acid change at residue 101 that is selective in its effects on activity. This change has no effect on posttranslational modifications. However, the calmodulin from the phenotypically related mutant pantophobiac A2 (pntA2) has a threonine residue at position 136, in the fourth calcium-binding domain, instead of an isoleucine or valine like all other calmodulins. This region of the calmodulin structure is within 4 A of a complementary hydrophobic structure in the third calcium-binding domain, raising the possibility of a perturbation of interdomain interactions in the pntA2 mutant. This possibility is supported by the heterogenous methylation state of lysine-115 in the pntA2 calmodulin. This lysine residue, located in the peptide connecting calcium-binding domains three and four, is fully trimethylated in the wild-type and pntA1 calmodulins. The functional selectivity of these structural changes is demonstrated by the conservation of calmodulin activator activity with a calmodulin-regulated protein kinase that has been used as a standard of comparison. Overall, these results indicate the degree to which the calmodulin can be mutated in vivo without being lethal to the organism, and they provide genetic evidence suggesting that the post-translational methylation state of residue 115 requires the appropriate conformation in addition to the local amino acid sequence.
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- 1989
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16. Amino acid sequence of the phosphorylation site of rat liver 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase.
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Murray, K J, El-Maghrabi, M R, Kountz, P D, Lukas, T J, Soderling, T R, and Pilkis, S J
- Abstract
6-Phosphofructo-2-kinase/fructose-2,6-bisphosphatase from rat liver was phosphorylated by cyclic AMP-dependent protein kinase and [gamma-32P]ATP. Treatment of the 32P-labeled enzyme with thermolysin removed all of the radioactivity from the enzyme core and produced a single labeled peptide. The phosphopeptide was purified by ion exchange chromatography, gel filtration, and reverse phase high pressure liquid chromatography. The sequence of the 12-amino acid peptide was found to be Val-Leu-Gln-Arg-Arg-Arg-Gly-Ser(P)-Ser-Ile-Pro-Gln. Correlation of the extent of phosphorylation with activity showed that a 50% decrease in the ratio of kinase activity to bisphosphate activity occurred when only 0.25 mol of phosphate was incorporated per mol of enzyme subunit, and maximal changes occurred with 0.7 mol incorporated. The kinetics of cyclic AMP-dependent protein kinase-catalyzed phosphorylation of the native bifunctional enzyme was compared with that of other rat liver protein substrates. The Km for 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase (10 microM) was less than that for rat liver pyruvate kinase (39 microM), fructose-1,6-bisphosphatase (222 microM), and 6- phosphofructose -1-kinase (230 microM). Comparison of the initial rate of phosphorylation of a number of protein substrates of the cyclic AMP-dependent protein kinase revealed that only skeletal muscle phosphorylase kinase was phosphorylated more rapidly than the bifunctional enzyme. Skeletal muscle glycogen synthase, heart regulatory subunit of cyclic AMP-dependent protein kinase, and liver pyruvate kinase were phosphorylated at rates nearly equal to that of 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase, while phosphorylation of fructose-1,6-bisphosphatase and 6-phosphofructo-1-kinase was barely detectable. Phosphorylation of 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase was not catalyzed by any other protein kinase tested. These results are consistent with a primary role of the cyclic AMP-dependent protein kinase in regulation of the enzyme in intact liver.
- Published
- 1984
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17. The intermediate filament protein, vimentin, in the lens is a target for cross-linking by transglutaminase.
- Author
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Clément, S, Velasco, P T, Murthy, S N, Wilson, J H, Lukas, T J, Goldman, R D, and Lorand, L
- Abstract
Mere addition of Ca2+ to a lens cortical homogenate (bovine) generates a series of products composed of a variety of high molecular weight vimentin species. The Ca2+-induced cross-linking of this cytoskeletal element seems to be mediated by the intrinsic transglutaminase of lens, because the reaction could be blocked at the monomeric state of vimentin by the inclusion of small synthetic substrates of the enzyme dansylcadaverine or dansyl-epsilon-aminocaproyl-Gln-Gln-Ile-Val. These compounds are known to compete against the Gln or Lys functionalities of proteins that would participate in forming the Nepsilon(gamma-glutamyl)lysine protein-to-protein cross-links. The cytosolic transglutaminase-catalyzed reactions could be reproduced with purified bovine lens vimentin and also with recombinant human vimentin preparations. Employing the latter system, we have titrated the transglutaminase-reactive sites of vimentin and, by sequencing the dansyl-tracer-labeled segments of the protein, we have shown that residues Gln453 and Gln460 served as acceptor functionalities and Lys97, Lys104, Lys294, and Lys439 as electron donor functionalities in vimentin. The transglutaminase-dependent reaction of this intermediate filament protein might influence the shape and plasticity of the fiber cells, and the enzyme-catalyzed cross-linking of vimentin, in conjunction with other lens constituents, may contribute to the process of cataract formation.
- Published
- 1998
18. Identification of residues of the epidermal growth factor receptor proximal to residue 45 of bound epidermal growth factor.
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Summerfield, A E, Hudnall, A K, Lukas, T J, Guyer, C A, and Staros, J V
- Abstract
A triple mutant of murine epidermal growth factor (mEGF), N1Q/H22Y/R45K-mEGF, was constructed by site-directed mutagenesis, expressed, purified, and characterized for use in an affinity cross-linking study to identify aminoacyl residues of the EGF receptor adjacent to a residue in the carboxyl-terminal domain of bound EGF thought to be important in distinguishing between EGF and transforming growth factor-alpha in their recognition by the receptor. Cyclization of Gln1 to form pyroglutamate (pE) limited the site of cross-linking in the mutant to Lys45, permitting identification of receptor residues that are proximal to this residue of bound EGF. The resulting N1pE/H22Y/R45K-mEGF was shown to be comparable to wild-type mEGF in receptor binding and stimulation of receptor autophosphorylation. 125I-Labeled N1pE/H22Y/R45K-mEGF was reacted with the heterobifunctional cross-linking reagent sulfo-N-succinimidyl-4-(fluorosulfonyl)benzoate, and the resulting modified EGF was incubated with A431 membrane vesicles bearing EGF receptors. Incubation resulted in specific cross-linking of the labeled N1pE/H22Y/R45K-mEGF to EGF receptors. The resulting cross-linked complex was then partially purified, denatured, reduced, and carboxyamidomethylated. Digestion with endoprotease LysC resulted in a unique radiolabeled peptide that could be immunoprecipitated using antibodies to mEGF. This immunoprecipitated fragment was purified by gel electrophoresis and subjected to microsequencing. The resulting sequence was matched to that of a LysC fragment of the receptor, which begins with Thr464 and is near the interface of receptor subdomains III and IV. Loss of signal at cycle 2 suggests that the point of attachment of cross-linked N1pE/H22Y/R45K is Lys465 of the receptor.
- Published
- 1996
19. A calcium-dependent 35-kilodalton substrate for epidermal growth factor receptor/kinase isolated from normal tissue.
- Author
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De, B K, Misono, K S, Lukas, T J, Mroczkowski, B, and Cohen, S
- Abstract
We have previously reported the isolation of a 35-kDa protein from A-431 cells that, in the presence of Ca2+, can serve as a substrate for the epidermal growth factor (EGF) receptor/tyrosine kinase (Fava, R.A., and Cohen, S. (1984) J. Biol. Chem. 259, 2636-2645). We now report the detection of an antigenically related 35-kDa protein in a number, but not all, of rat, pig, and human tissues. These antigenically related proteins also can serve as substrates for the EGF receptor/kinase in the presence of Ca2+. All of these proteins share the property of reversible, Ca2+-dependent binding to the particulate fraction (presumably membranes) of cell homogenates. We have isolated the 35-kDa substrate from porcine lung and have demonstrated that it is a Ca2+-binding protein. The amino-terminal sequence and the site of tyrosine phosphorylation therein have been determined. The positions of the acidic amino acid residues amino-terminal to the tyrosine phosphorylation site bear a distinct resemblance to the sequence in the homologous region of a number of other substrates for tyrosine kinases. Based on available data, the 35-kDa protein clearly differs from the protein I complex derived from intestinal mucosa and thought to be related to the proteins isolated herein (Gerke, V., and Weber, K. (1985) J. Biol. Chem. 260, 1688-1695). Finally, we report a striking sequence homology between the porcine 35-kDa described herein and human lipocortin, a phospholipase A2 inhibitor.
- Published
- 1986
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20. Solid-phase peptide synthesis under continuous-flow conditions.
- Author
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Lukas, T J, Prystowsky, M B, and Erickson, B W
- Abstract
A system is described for solid-phase synthesis of peptides under continuous-flow conditions with liquid chromatographic equipment, conventional polystyrene supports, and well-defined chemistry. The model tetrapeptide Leu-Ala-Gly-Val was assembled in 99.3% purity in about 4 hr on microporous copoly(styrene-1% divinylbenzene). During coupling, the preformed symmetric anhydrides were conserved by being recycled. Relative yields of the peptide products were determined quantitatively in 20 min by reverse-phase high-pressure liquid chromatography. This rapid assay system was used to examine the influence on product yields of (i) the time and number of couplings per cycle, (ii) microporous versus macroporous polystyrene, and (iii) tert-butoxycarbonyl (Boc) group versus 9-fluorenylmethoxycarbonyl for amine protection. Use of microporous polystyrene and two 30-min couplings of Boc-amino acids per cycle gave the best results. This continuous-flow system provides a rapid and efficient approach to solid-phase peptide synthesis. A 17-residue peptide from chicken ovalbumin was obtained in similar purity and yield from a discontinuous synthesis and from a continuous-flow synthesis.
- Published
- 1981
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21. Amino acid sequence of a novel calmodulin from Paramecium tetraurelia that contains dimethyllysine in the first domain.
- Author
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Schaefer, W H, Lukas, T J, Blair, I A, Schultz, J E, and Watterson, D M
- Abstract
A class of Paramecium behavioral mutants called pantophobiacs have a deficiency in calcium-dependent potassium efflux, and this deficiency can be corrected by the microinjection of wild-type Paramecium calmodulin (Hinrichsen, R. D., Burgess-Cassler, A., Soltvelt, B. C., Hennessey, T., and Kung, C. (1986) Science 232, 503-506). As a starting point in investigations of which features allow wild-type Paramecium calmodulin to fully restore this behavior while other calmodulins are inactive or poorly effective, we elucidated the amino acid sequence of the wild-type calmodulin. We utilized an approach that combined Edman chemistry with mass spectrometry. This approach resulted in the identification of a new post-translational modification in calmodulin: N epsilon,N epsilon-dimethyllysine at residue 13. This particular modification has not been described for calmodulins studied previously. The only other first-domain modification that has been described for any calmodulin is acetylation of the amino terminus (Watterson, D. M., Sharief, F., and Vanaman, T. C. (1980) J. Biol. Chem. 255, 962-975). These results along with analyses of pantophobiac calmodulin and calmodulin binding proteins will provide insight into calmodulin's role in a well-defined behavioral mutant.
- Published
- 1987
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22. Trimethyllysine and protein function. Effect of methylation and mutagenesis of lysine 115 of calmodulin on NAD kinase activation.
- Author
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Roberts, D M, Rowe, P M, Siegel, F L, Lukas, T J, and Watterson, D M
- Abstract
Unmethylated calmodulins have been enzymatically methylated at lysine 115, and a direct effect of this methylation on NAD kinase activation has been shown. Similar to naturally occurring calmodulins with trimethyllysine 115, the enzymatically methylated calmodulins activated an NAD kinase preparation to a maximal level that was at least 3-fold lower than the level of activation obtained with the corresponding unmethylated calmodulins. Methylation did not alter the cyclic nucleotide phosphodiesterase activator properties of these calmodulins. A genetically engineered calmodulin containing an arginine at position 115 instead of a lysine was produced by site-specific mutagenesis of a cloned synthetic calmodulin gene. The arginine derivative retained the higher maximal NAD kinase activator properties of the unmethylated calmodulins but was no longer susceptible to the effects of the methyltransferase. The data indicate that the reduction in the level of NAD kinase activation is the direct result of trimethylation of lysine 115 of calmodulin, provide a precedent for a functional effect of trimethyllysine in a protein, and raise the possibility that some of calmodulin's physiological activities may be affected by lysine methylation.
- Published
- 1986
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23. ChemInform Abstract: A THIOCHOLINE SURFACTANT: PREPARATION AND KINETIC PROPERTIES
- Author
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MOSS, R. A., primary, BIZZIGOTTI, G. O., additional, LUKAS, T. J., additional, and SANDERS, W. J., additional
- Published
- 1979
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24. ChemInform Abstract: A CYSTEINE-FUNCTIONALIZED MICELLAR CATALYST
- Author
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MOSS, R. A., primary, NAHAS, R. C., additional, and LUKAS, T. J., additional
- Published
- 1978
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25. ChemInform Abstract: PREPARATION AND KINETIC PROPERTIES OF CYSTEINE SURFACTANTS
- Author
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MOSS, R. A., primary, LUKAS, T. J., additional, and NAHAS, R. C., additional
- Published
- 1978
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26. ChemInform Abstract: MICELLAR STEREOSELECTIVITY. CLEAVAGE OF DIASTEREOMERIC SUBSTRATES BY FUNCTIONAL SURFACTANT MICELLES
- Author
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MOSS, R. A., primary, LEE, Y.‐S., additional, and LUKAS, T. J., additional
- Published
- 1979
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27. ChemInform Abstract: NEW AMINO ACID‐FUNCTIONALIZED SURFACTANTS, PREPARATION AND CATALYTIC PROPERTIES
- Author
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MOSS, R. A., primary, LUKAS, T. J., additional, and NAHAS, R. C., additional
- Published
- 1978
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28. Inhibition of C1-mediated immune hemolysis by monomeric and dimeric peptides from the second constant domain of human immunoglobulin G.
- Author
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Lukas, T J, primary, Muñoz, H, additional, and Erickson, B W, additional
- Published
- 1981
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29. ChemInform Abstract: AUTOMATED SOLID‐PHASE PEPTIDE SYNTHESIS
- Author
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ERICKSON, B. W., primary, LUKAS, T. J., additional, and PRYSTOWSKY, M. B., additional
- Published
- 1981
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30. Phosphorylation of kinase-related protein (telokin) in tonic and phasic smooth muscles.
- Author
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Krymsky MA, Kudryashov DS, Shirinsky VP, Lukas TJ, Watterson DM, and Vorotnikov AV
- Subjects
- Animals, Carotid Arteries anatomy & histology, Chickens, Colforsin pharmacology, Culture Techniques, Gizzard, Avian anatomy & histology, Isometric Contraction drug effects, Muscle Relaxation drug effects, Muscle, Smooth, Vascular enzymology, Myosin-Light-Chain Kinase, Peptide Fragments, Peptide Mapping, Peptides, Phorbol 12,13-Dibutyrate pharmacology, Phosphorylation, Potassium Chloride pharmacology, Time Factors, Muscle Contraction drug effects, Muscle Proteins metabolism, Muscle, Smooth, Vascular metabolism, Muscle, Smooth, Vascular physiology
- Abstract
KRP (telokin), an independently expressed C-terminal myosin-binding domain of smooth muscle myosin light chain kinase (MLCK), has been reported to have two related functions. First, KRP stabilizes myosin filaments (Shirinsky et al., 1993, J. Biol. Chem. 268, 16578-16583) in the presence of ATP. Secondly, KRP can modulate the level of myosin light chain phosphorylation. In this latter role, multiple mechanisms have been suggested. One hypothesis is that light chain phosphorylation is diminished by the direct competition of KRP and MLCK for myosin, resulting in a loss of contraction. Alternatively, KRP, through an unidentified mechanism, accelerates myosin light chain dephosphorylation in a manner possibly enhanced by KRP phosphorylation. Here, we demonstrate that KRP is a major phosphoprotein in smooth muscle, and use a comparative approach to investigate how its phosphorylation correlates with sustained contraction and forskolin-induced relaxation. Forskolin relaxation of precontracted artery strips caused little increase in KRP phosphorylation, while treatment with phorbol ester increased the level of KRP phosphorylation without a subsequent change in contractility. Although phorbol ester does not induce contraction of phasic tissues, the level of KRP phosphorylation is increased. Phosphopeptide maps of KRP from both tissues revealed multiple sites of phosphorylation within the N-terminal region of KRP. Phosphopeptide maps of KRP from gizzard were more complex than those for KRP from artery consistent with heterogeneity at the amino terminus and/or additional sites. We discovered through analysis of KRP phosphorylation in vitro that Ser12, Ser15 and Ser15 are phosphorylated by cAMP-dependent protein kinase, mitogen-activated protein (MAP) kinase and glycogen synthase kinase 3 (GSK3), respectively. Phosphorylation by GSK3 was dependent upon prephosphorylation by MAP kinase. This appears to be the first report of conditional or hierarchical phosphorylation of KRP. Peptides consistent with such multiple phosphorylations were found on the in vivo phosphopeptide maps of avian KRP. Collectively, the available data indicate that there is a complex relationship between the in vivo phosphorylation states of KRP and its effects on relaxation in smooth muscle.
- Published
- 2001
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31. Transglutaminase-catalyzed crosslinking of the Aalpha and gamma constituent chains in fibrinogen.
- Author
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Murthy SN, Wilson JH, Lukas TJ, Veklich Y, Weisel JW, and Lorand L
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- Amino Acid Sequence, Blood Coagulation, Cross-Linking Reagents metabolism, Dipeptides analysis, Erythrocytes enzymology, Fibrinogen ultrastructure, Fibrinopeptide A metabolism, Fibrinopeptide B metabolism, Humans, Kinetics, Microscopy, Electron, Models, Molecular, Molecular Sequence Data, Peptide Fragments analysis, Sequence Analysis, Thrombin metabolism, Fibrinogen metabolism, Transglutaminases metabolism
- Abstract
Studies on transglutaminases usually focus on the polymerization of protein substrates by intermolecular N(epsilon)(gamma-glutamyl)lysine bridges, without considering the possibility that the monomeric protein units, themselves, could also become crosslinked internally. Both types of crosslinks are produced in the reaction of fibrinogen with red cell transglutaminase. We isolated the transglutaminase-modified, mostly monomeric form (92-96%) of fibrinogen with a N(epsilon)(gamma-glutamyl)lysine content of approximately 1.6 moles/mole of fibrinogen. The preparation was fully clottable by thrombin, but the rates of release of fibrinopeptides and clotting times were delayed compared with control. Hybrid Aalpha.gamma type of crosslinking, the hallmark of the reaction of the transglutaminase with fibrinogen, occurred by bridging the Aalpha(408-421) chain segment of the protein to that of gamma(392-406). Rotary shadowed electron microscope images showed many monomers to be bent, and the crosslinks seemed to bind the otherwise flexible alphaC domain closer to the backbone of fibrinogen.
- Published
- 2000
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32. Unique sequence of a high molecular weight myosin light chain kinase is involved in interaction with actin cytoskeleton.
- Author
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Kudryashov DS, Chibalina MV, Birukov KG, Lukas TJ, Sellers JR, Van Eldik LJ, Watterson DM, and Shirinsky VP
- Subjects
- Actin Cytoskeleton metabolism, Animals, Binding Sites, Cells, Cultured, Chickens, Green Fluorescent Proteins, HeLa Cells, Humans, Luminescent Proteins metabolism, Molecular Weight, Muscle, Smooth, Vascular enzymology, Protein Isoforms, Rabbits, Turkeys, Actins metabolism, Cytoskeleton metabolism, Myosin-Light-Chain Kinase chemistry, Myosin-Light-Chain Kinase metabolism
- Abstract
Myosin light chain kinase (MLCK) is the key regulator of cell motility and smooth muscle contraction in higher vertebrates. We searched for the features of the high molecular weight MLCK (MLCK-210) associated with its unique N-terminal sequence not found in a more ubiquitous lower molecular weight MLCK (MLCK-108). MLCK-210 demonstrates stronger association with the Triton-insoluble cytoskeletons than MLCK-108, suggesting the role for this sequence in subcellular targeting. Indeed, the expressed unique domain of MLCK-210 binds and bundles F-actin in vitro and colocalises with the microfilaments in transfected cells reproducing endogenous MLCK-210 distribution. Thus, MLCK-210 features an extensive actin binding interface and, perhaps, acts as an actin cytoskeleton stabiliser.
- Published
- 1999
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33. Screening in a cell-based assay for inhibitors of microglial nitric oxide production reveals calmodulin-regulated protein kinases as potential drug discovery targets.
- Author
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Mirzoeva S, Koppal T, Petrova TV, Lukas TJ, Watterson DM, and Van Eldik LJ
- Subjects
- Amidines pharmacology, Animals, Benzylamines pharmacology, Carbazoles pharmacology, Cell Line, Cell Nucleus metabolism, Cyclic AMP Response Element-Binding Protein metabolism, Flavonoids pharmacology, Imidazoles pharmacology, Indole Alkaloids, Isoquinolines pharmacology, Lipopolysaccharides pharmacology, Mice, Microglia cytology, NF-kappa B metabolism, Nitric Oxide Synthase antagonists & inhibitors, Nitric Oxide Synthase metabolism, Phosphorylation, Pyridines pharmacology, Staurosporine pharmacology, Calcium Signaling drug effects, Calcium-Calmodulin-Dependent Protein Kinases metabolism, Drug Design, Enzyme Inhibitors pharmacology, Microglia enzymology, Nitric Oxide metabolism, Sulfonamides
- Abstract
A high-throughput screening (HTS) assay for inhibitors of nitric oxide (NO) production by activated microglia was developed and used to compare the relative activities of various anti-inflammatory compounds and cell-permeable protein kinase inhibitors. BV-2 cells, an immortalized line that retains phenotypic features of microglia and produces NO in response to lipopolysaccharide (LPS), were used in the activation paradigm for the HTS assay. A characteristic feature of the compounds that were the most potent dose-dependent inhibitors of NO production is their ability to modulate serine/threonine protein kinases. The anti-inflammatory compound K252a, an inhibitor of calmodulin (CaM)-regulated protein kinases, had one of the highest potencies in the assay. Other classes of kinase inhibitors, including the protein kinase A inhibitor H-89, the mitogen activated protein kinase inhibitors PD98059 and SB203580, and the tyrosine kinase inhibitor genistein, were less potent and efficacious than K252a or the general serine/threonine/tyrosine kinase inhibitor staurosporine. K252a suppresses production of the inducible nitric-oxide synthase (iNOS). The inhibitory effect of K252a is not due to cell toxicity and does not correlate with inhibition of NFkappaB nuclear translocation. The mechanism of action appears to involve inhibition of phosphorylation of the transcription factor CREB, a protein whose activity is modulated by phosphorylation by CaM-dependent protein kinases. These data suggest that signal transduction pathways mediated by CaM-dependent protein kinases warrant future study as potential drug discovery targets.
- Published
- 1999
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34. Identification of calcium binding sites in the trypanosome flagellar calcium-acyl switch protein.
- Author
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Maldonado RA, Mirzoeva S, Godsel LM, Lukas TJ, Goldenberg S, Watterson DM, and Engman DM
- Subjects
- Amino Acid Sequence, Animals, Binding Sites, Calcium-Binding Proteins chemistry, Calcium-Binding Proteins genetics, Gene Deletion, Genetic Vectors, Hippocalcin, Microscopy, Fluorescence, Molecular Sequence Data, Mutation, Protozoan Proteins chemistry, Protozoan Proteins genetics, Recombinant Proteins, Recoverin, Trypanosoma cruzi genetics, Calcium metabolism, Calcium-Binding Proteins metabolism, Eye Proteins, Lipoproteins, Nerve Tissue Proteins, Protozoan Proteins metabolism, Trypanosoma cruzi metabolism
- Abstract
The 24 kDa flagellar calcium binding protein (FCaBP) of the protozoan Trypanosoma cruzi is a calcium-acyl switch protein. FCaBP is modified by the addition of myristate and palmitate at its amino terminal segment and both modifications are required for calcium-modulated flagellar membrane association. FCaBP has four sequence motifs for potential calcium binding, and comparison to other calcium-acyl switch proteins, such as recoverin, suggested that only two of these sites are functional. Because it is not possible to predict with certainty the calcium binding affinity or selectivity based on motif analysis alone, we determined the quantitative calcium binding activity of FCaBP by direct ligand binding using the flow dialysis method. The results demonstrated the presence of two calcium binding sites in the full length FCaBP and in a mutant (FCaBPdelta12) lacking the amino terminal pair of sites. FCaBPdelta12 retains its ability to localize to the flagellum. A mutant FCaBP lacking the two carboxyl-terminal sites (FCaBPdelta34), did not bind calcium with high affinity and selectivity under the conditions used. The calcium binding properties of FCaBP are therefore distinct from other myristoyl switch proteins such as recoverin. The results add to a growing body of knowledge about the correlation of sequence motifs with calcium binding activity. Moreover, they demonstrate the need to determine the apparently novel mechanism by which FCaBP undergoes calcium modulated flagellar membrane association and its relation to calcium signal transduction.
- Published
- 1999
- Full Text
- View/download PDF
35. Analysis of the functional coupling between calmodulin's calcium binding and peptide recognition properties.
- Author
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Mirzoeva S, Weigand S, Lukas TJ, Shuvalova L, Anderson WF, and Watterson DM
- Subjects
- Amino Acid Sequence, Amino Acid Substitution genetics, Animals, Calcium metabolism, Calmodulin genetics, Calmodulin metabolism, Chickens, Enzyme Activation genetics, Glutamic Acid genetics, Lysine genetics, Models, Molecular, Molecular Sequence Data, Mutagenesis, Site-Directed, Myosin-Light-Chain Kinase genetics, Myosin-Light-Chain Kinase metabolism, Peptides genetics, Peptides metabolism, Protein Binding genetics, Protein Folding, Calcium chemistry, Calmodulin chemistry, Peptides chemistry
- Abstract
The enhancement of calmodulin's (CaM) calcium binding activity by an enzyme or a recognition site peptide and its diminution by key point mutations at the protein recognition interface (e.g., E84K-CaM), which is more than 20 A away from the nearest calcium ligation structure, can be described by an expanded version of the Adair-Klotz equation for multiligand binding. The expanded equation can accurately describe the calcium binding events and their variable linkage to protein recognition events can be extended to other CaM-regulated enzymes and can potentially be applied to a diverse array of ligand binding systems with allosteric regulation of ligand binding, whether by other ligands or protein interaction. The 1.9 A resolution X-ray crystallographic structure of the complex between E84K-CaM and RS20 peptide, the CaM recognition site peptide from vertebrate smooth muscle and nonmuscle forms of myosin light chain kinase, provides insight into the structural basis of the functional communication between CaM's calcium ligation structures and protein recognition surfaces. The structure reveals that the complex adapts to the effect of the functional mutation by discrete adjustments in the helix that contains E84. This helix is on the amino-terminal side of the helix-loop-helix structural motif that is the first to be occupied in CaM's calcium binding mechanism. The results reported here are consistent with a sequential and cooperative model of CaM's calcium binding activity in which the two globular and flexible central helix domains are functionally linked, and provide insight into how CaM's calcium binding activity and peptide recognition properties are functionally coupled.
- Published
- 1999
- Full Text
- View/download PDF
36. Cross-linking sites of the human tau protein, probed by reactions with human transglutaminase.
- Author
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Murthy SN, Wilson JH, Lukas TJ, Kuret J, and Lorand L
- Subjects
- Amino Acid Sequence, Humans, Isomerism, Recombinant Proteins, tau Proteins chemistry, tau Proteins drug effects, Cross-Linking Reagents pharmacology, Transglutaminases pharmacology, tau Proteins genetics, tau Proteins physiology
- Abstract
A portion of the neurofibrillary tangles of Alzheimer's disease has the characteristics of cross-linked protein. Because the principal component of these lesions is the microtubule-associated protein tau, and because a major source of cross-linking activity within neurons is supplied by tissue transglutaminase (TGase), it has been postulated that isopeptide bond formation is a major posttranslational modification leading to the formation of insoluble neurofibrillary tangles. Here we have mapped the sites on two isoforms of human tau protein (tau23 and tau40) capable of participating in human TGase-mediated isopeptide bond formation. Using dansyl-labeled fluorescent probes, it was shown that eight Gln residues can function as amine acceptor residues, with two major sites being Gln351 and Gln424. In addition, 10 Lys residues were identified as amine donors, most of which are clustered adjacent to the microtubule-binding repeats of tau in regions known to be solvent accessible in filamentous tau. The distribution of amine donors correlated closely with that of Arg residues, suggesting a link between neighboring positive charge and the TGase selectivity for donor sites in the protein substrate. Apart from revealing the sites that can be cross-linked during the TGase-catalyzed assembly of tau filaments, the results suggest a topography for the tau monomers so assembled.
- Published
- 1998
- Full Text
- View/download PDF
37. Hierarchy of lens proteins requiring protection against heat-induced precipitation by the alpha crystallin chaperone.
- Author
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Velasco PT, Lukas TJ, Murthy SN, Duglas-Tabor Y, Garland DL, and Lorand L
- Subjects
- Amino Acid Sequence, Animals, Cataract etiology, Cataract metabolism, Cattle, Cell Aggregation, Chemical Precipitation, Electrophoresis, Polyacrylamide Gel, Molecular Sequence Data, Protein Denaturation, Crystallins metabolism, Hot Temperature, Lens, Crystalline metabolism, Molecular Chaperones metabolism
- Abstract
Gel filtration of the water-soluble extract from bovine lens yields a group of proteins, emerging between the peaks of beta H and beta L crystallins, which show a considerably greater sensitivity to heat-induced aggregation/precipitation than the far more abundant beta and gamma crystallins. However, the small heat shock protein: alpha crystallin was effective in protecting these trace constituents of the lens from precipitating out of solution at 55 degrees C (measured under the standard conditions in a pH 7.5 buffer containing 50 mM sodium phosphate, 100 mM NaCl, 1 mM EDTA and 0.05% NaN3). Prominent components of the precipitate, formed in the absence of a recombinant alpha B crystallin chaperone could be resolved by one- and two-dimensional electrophoresis. Identification by amino acid sequencing revealed that the heat-sensitive group of lens proteins comprised glyceraldehyde-3-phosphate dehydrogenase (M(r) approximately 39 kDa), enolase (approximately 48 kDa), leucine aminopeptidase (approximately 52 kDa) and aldehyde dehydrogenase (approximately 53 kDa). These findings indicate for the first time that the aggregation of such minor lens constituents could possibly contribute to initiating the process of opacification in the development of cataracts.
- Published
- 1997
- Full Text
- View/download PDF
38. An antigenically related polypeptide family is a major structural constituent of a stable acrosomal matrix assembly in bovine spermatozoa.
- Author
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Olson GE, Winfrey VP, Neff JC, Lukas TJ, and NagDas SK
- Subjects
- Acrosome physiology, Amino Acid Sequence, Animals, Cattle, Fluorescent Antibody Technique, Immunoblotting, Male, Microscopy, Immunoelectron, Molecular Sequence Data, Peptides chemistry, Proteins chemistry, Sequence Homology, Sperm Capacitation, Acrosome chemistry, Antigens, Gonadal Steroid Hormones, Membrane Proteins, Peptides analysis, Proteins analysis, Spermatozoa ultrastructure
- Abstract
The apical and principal segments of the bovine acrosome contain a stable matrix complex that is bound to the outer acrosomal membrane and exhibits hydrolase-binding activity. The present study was undertaken to determine whether the outer acrosomal membrane-associated matrix complex (OMC) is composed of a unique set of acrosomal proteins and to define its fate during both capacitation and the acrosome reaction. A purified OMC fraction was isolated from ejaculated spermatozoa, and one polypeptide of 32 kDa (OMC32) was purified to homogeneity and used for N-terminal sequence analysis and preparation of monospecific antisera. Immunofluorescence staining of sperm with anti-OMC32 demonstrated that the polypeptide localized specifically to the apical and principal segments of the acrosome. Immunoelectron microscopy further revealed that OMC32 was restricted to the stable matrix assembly and was not associated with the inner acrosomal membrane or the equatorial segment. Immunoblot analyses of sperm lysates and of the purified OMC fraction revealed that anti-OMC32 recognized an antigenically related family of polypeptides between 38 and 19 kDa. These polypeptides exhibited no size processing during capacitation or the acrosome reaction, and they were not released during the acrosome reaction but remained in the particulate cell subfraction, associated with the hybrid membrane complex. N-terminal sequence analysis of OMC32 indicated a structural relationship to the SP-10 polypeptide family of human and baboon spermatozoa. The potential function of the OMC complex and differences in the intraacrosomal distribution of bovine OMC32-related polypeptides from that reported for acrosomal SP-10 polypeptides in other species are discussed.
- Published
- 1997
- Full Text
- View/download PDF
39. Multiple gene products are produced from a novel protein kinase transcription region.
- Author
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Watterson DM, Collinge M, Lukas TJ, Van Eldik LJ, Birukov KG, Stepanova OV, and Shirinsky VP
- Subjects
- Amino Acid Sequence, Animals, Blotting, Northern, Blotting, Western, Brain Chemistry, Calcium-Binding Proteins chemistry, Calcium-Binding Proteins genetics, Cells, Cultured, Chick Embryo, Chickens, Fibroblasts, Gene Expression, Kinesins chemistry, Kinesins genetics, Molecular Sequence Data, Molecular Weight, Muscle Proteins chemistry, Muscle Proteins genetics, Myosin-Light-Chain Kinase genetics, Open Reading Frames genetics, RNA, Messenger genetics, Sequence Analysis, Transcription, Genetic, Myosin-Light-Chain Kinase chemistry
- Abstract
The nonmuscle/smooth muscle myosin light chain kinase (MLCK) and the kinase related protein (KRP) that lacks protein kinase activity are myosin II binding proteins encoded in the vertebrate genome by a true gene within a gene relationship. The genomic organization and expression result in the same amino acid sequence in different molecular contexts from two different sizes of mRNA. We report here the identification and characterization of a third size class of gene products. The protein appears to be a higher molecular weight form of MLCK with additional amino terminal tail sequence which might provide differential subcellular targeting characteristics.
- Published
- 1995
- Full Text
- View/download PDF
40. Interaction of smooth muscle caldesmon with calmodulin mutants.
- Author
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Medvedeva MV, Bushueva TL, Shirinsky VP, Lukas TJ, Watterson DM, and Gusev NB
- Subjects
- Animals, Calcium-Calmodulin-Dependent Protein Kinases metabolism, Calcium-Transporting ATPases metabolism, Calmodulin genetics, Cattle, Ducks, Mutation, Phosphorylase Kinase metabolism, Spectrometry, Fluorescence, Calmodulin metabolism, Calmodulin-Binding Proteins metabolism, Muscle, Smooth metabolism
- Abstract
The interaction of avian smooth muscle caldesmon with calmodulin (CaM) was investigated by studying the ability of selected mutant calmodulins to induce fluorescence changes in caldesmon. Different types of CaM mutants were used including point charge mutants, cluster mutations, and mutations which alter the calcium binding of CaM. The caldesmon binding properties were only slightly affected by E84K-CaM or by the double mutation E84Q/E120Q-CaM. Affinity of calmodulin to caldesmon was decreased 2-4 times by point mutation G33V-CaM, double mutation E84K/E120K-CaM, deletion of residues 82-84, and by cluster mutations DEE118-120-->KKK or EEE82-84-->KKK. Mutations of the first (E31A-CaM) and the second (E67A-CaM) calcium binding sites reduced the affinity of calmodulin to caldesmon by at least 5-fold; in addition these calmodulin mutants exhibited smaller changes in the fluorescence spectra of caldesmon. Simultaneous mutation of the two negatively charged clusters of calmodulin EEE82-84-->KKK and DEE118-120-->KKK resulted in a more than 15-fold decrease in the affinity of calmodulin for caldesmon. The data indicate that charged and uncharged amino acids in both halves of CaM play an important role in the binding of calmodulin to caldesmon, and that Ca2+ binding must be maintained in the amino-terminal sites for maximal interaction with caldesmon.
- Published
- 1995
- Full Text
- View/download PDF
41. Gain of function mutations for yeast calmodulin and calcium dependent regulation of protein kinase activity.
- Author
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Lukas TJ, Collinge M, Haiech J, and Watterson DM
- Subjects
- Amino Acid Sequence, Base Sequence, Binding Sites, Calmodulin chemistry, Calmodulin genetics, Enzyme Activation, Escherichia coli genetics, Molecular Conformation, Molecular Sequence Data, Mutagenesis, Site-Directed, Myosin-Light-Chain Kinase metabolism, Calcium metabolism, Calmodulin metabolism, Protein Kinases metabolism, Saccharomyces cerevisiae genetics
- Abstract
Yeast calmodulin binds only three calcium ions in the presence of millimolar concentrations of magnesium due to a defective calcium-binding sequence in its carboxyl terminal domain. Yeast calmodulin's diminished calcium-binding activity can be restored to that of other calmodulins by the use of site-directed mutagenesis to substitute its fourth calcium-binding domain with that of a vertebrate calmodulin sequence. However, the repair of yeast calmodulin's calcium-binding activity is not sufficient to repair quantitatively yeast calmodulin's defective protein kinase activator activity. Yeast calmodulin's activator activity with smooth muscle and skeletal muscle myosin light chain kinases and brain calmodulin-dependent protein kinase II can be progressively repaired by additional substitutions of vertebrate calmodulin sequences, provided that the four calcium-binding sites remain intact. An unexpected result obtained during the course of these studies was the observation that myosin light chain kinases from smooth and skeletal muscle tissues can respond differently to mutations in calmodulin. These and previous results indicate that the binding of four calcium ions by calmodulin is necessary but not sufficient to bring about quantitative activation of protein kinases, and are consistent with the conformational selection/restriction model of the dynamic equilibrium among calcium, calmodulin and each calmodulin regulated enzyme.
- Published
- 1994
- Full Text
- View/download PDF
42. A kinase-related protein stabilizes unphosphorylated smooth muscle myosin minifilaments in the presence of ATP.
- Author
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Shirinsky VP, Vorotnikov AV, Birukov KG, Nanaev AK, Collinge M, Lukas TJ, Sellers JR, and Watterson DM
- Subjects
- Adenosine Triphosphate metabolism, Animals, Blotting, Northern, Calcium-Binding Proteins genetics, Chickens, Electrophoresis, Polyacrylamide Gel, Kinesins, Muscle Proteins genetics, Muscle, Smooth ultrastructure, Myosin-Light-Chain Kinase genetics, Myosin-Light-Chain Kinase metabolism, Phosphorylation, Turkeys, Calcium-Binding Proteins metabolism, Muscle Proteins metabolism, Muscle, Smooth metabolism, Myosins metabolism
- Abstract
An apparent paradox in smooth muscle biology is the ability of unphosphorylated myosin to maintain a filamentous structure in the presence of ATP in vivo, whereas unphosphorylated myosin filaments are depolymerized in vitro in the presence of ATP. This suggests that additional uncharacterized factors are required for the stabilization of myosin filaments in the presence of ATP. We report here that an abundant smooth muscle protein forms sedimentable complexes with unphosphorylated smooth muscle myosin, partially reverses the depolymerizing effect of ATP on unphosphorylated myosin, and promotes the assembly of minifilaments as revealed by electron microscopy. This protein is called kinase-related protein (KRP) because it is derived from a gene within the gene for myosin light chain kinase (MLCK) and has an amino acid sequence identical to the carboxyl-terminal domain of MLCK. Consistent with the results with purified KRP, deletion of the KRP domain within MLCK results in a diminished ability of MLCK to interact with unphosphorylated myosin. KRP binds to the heavy meromyosin fragment of myosin but not to myosin rod or fragments lacking the hinge region and light chains. Altogether, these results suggest that KRP may play a critical role in stabilizing unphosphorylated myosin filaments and that the KRP domain of MLCK may be important for subcellular targeting to filaments.
- Published
- 1993
43. Features of calmodulin that are important in the activation of the catalytic subunit of phosphorylase kinase.
- Author
-
Farrar YJ, Lukas TJ, Craig TA, Watterson DM, and Carlson GM
- Subjects
- Amino Acid Sequence, Animals, Calmodulin genetics, Catalysis, Enzyme Activation, Molecular Sequence Data, Muscles enzymology, Mutation, Peptides metabolism, Rabbits, Substrate Specificity, Calmodulin metabolism, Phosphorylase Kinase metabolism
- Abstract
Calmodulin (CaM) is an integral subunit, called delta, of the phosphorylase kinase hexadecamer, and the activity of the isolated catalytic gamma-subunit of the kinase is stimulated by CaM. We report here the first analysis of functionally important features of CaM for activation of the gamma-subunit. A set of genetically engineered CaMs, in which acidic residues in each of the four E-helices of the "EF-hands" were changed to basic lysine residues, was used to probe the relative importance of charge features in each domain of CaM. The maximal activation of the isolated gamma-subunit was diminished by all of the charge reversal mutations. The gamma-subunit was especially sensitive to reversals in the second and third E-helix of CaM (residues 45-47 and 82-84), the latter being present in the central helix. The results suggest the functional importance of electrostatics in the interactions between the delta-subunit (CaM) and the catalytic gamma-subunit of phosphorylase kinase, which is similar to results obtained with CaM-dependent myosin light chain kinase (MLCK) from chicken gizzard and CaM-dependent protein kinase II (CaMPK-II). However, novel features of the interaction between CaM and the gamma-subunit of phosphorylase kinase are the significant contribution of electrostatics throughout the CaM molecule, including residues in both halves and on more than one face of CaM, and the lack of a major effect of the CaM mutations on substrate kinetic parameters, unlike the effects observed with MLCK and CaMPK-II. These results are consistent with a model in which the delta-subunit (CaM) of phosphorylase kinase interacts with an extended region or multiple regions of the gamma-subunit and suggest that the mechanism of CaM activation of the gamma-subunit may have features that are distinct from those of MLCK and CaMPK-II.
- Published
- 1993
44. The heterodimer calmodulin: myosin light-chain kinase as a prototype vertebrate calcium signal transduction complex.
- Author
-
Kilhoffer MC, Lukas TJ, Watterson DM, and Haiech J
- Subjects
- Amino Acid Sequence, Calmodulin chemistry, Cell Adhesion Molecules chemistry, Enzyme Activation drug effects, Molecular Sequence Data, Sequence Alignment, Signal Transduction, Calcium metabolism, Calmodulin metabolism, Myosin-Light-Chain Kinase metabolism
- Abstract
The heterodimer complex of calmodulin (CaM) and the protein kinase catalytic subunit of myosin light chain kinase from vertebrate smooth muscle and non-muscle tissues (sm/nmMLCK) is one of the most extensively characterized CaM-regulated enzyme complexes and it has an established in vivo role in the transduction of calcium signals into biological responses. We have used a combination of approaches to the study of CaM and sm/nmMLCK in order to derive initial insight into the key features of each protein and of the CaM-MLCK heterodimeric complex that are involved in protein-protein and calcium-protein recognition and regulation of enzyme activity. On-going studies are described here that include site-specific mutagenesis, fluorescence spectroscopy, enzymology and peptide analog analysis. These and previous results indicate that: (1), both electrostatic and hydrophobic features are important in the functionally correct interactions between CaM and MLCK; (2), even the interactions between CaM and peptide analogs of the CaM binding site of MLCK are heterogeneous and non-trivial in nature; (3), amino-acid residues that have been conserved in CaM across millions of years of evolution and that are conserved in CaMs with quantitative MLCK activator activity can be mutated without any detectable effect on activity and (4), structures different from the prototypical EF-hand domain of CaM can have similar calcium-binding activity in the presence of a CaM binding structure.
- Published
- 1992
- Full Text
- View/download PDF
45. Site-specific amino acid alterations in Ca2+ binding domains in calmodulin impair activation of RBC Ca(2+)-ATPase.
- Author
-
Kosk-Kosicka D, Bzdega T, Wawrzynow A, Watterson DM, and Lukas TJ
- Subjects
- Binding Sites, Biophysical Phenomena, Biophysics, Calcium metabolism, Calcium-Transporting ATPases blood, Calmodulin chemistry, Calmodulin genetics, Enzyme Activation, Erythrocytes enzymology, In Vitro Techniques, Mutagenesis, Site-Directed, Calcium-Transporting ATPases metabolism, Calmodulin metabolism
- Published
- 1992
- Full Text
- View/download PDF
46. Fluorescence analysis of calmodulin mutants containing tryptophan: conformational changes induced by calmodulin-binding peptides from myosin light chain kinase and protein kinase II.
- Author
-
Chabbert M, Lukas TJ, Watterson DM, Axelsen PH, and Prendergast FG
- Subjects
- Amino Acid Sequence, Animals, Calcium metabolism, Calmodulin chemistry, Calmodulin genetics, Models, Molecular, Molecular Sequence Data, Mutation, Protein Conformation, Rats, Spectrometry, Fluorescence, Spectrophotometry, Ultraviolet, Tryptophan metabolism, Calmodulin metabolism, Calmodulin-Binding Proteins metabolism, Myosin-Light-Chain Kinase metabolism, Protein Kinases metabolism
- Abstract
Peptide-induced conformational changes in five isofunctional mutants of calmodulin (CaM), each bearing a single tryptophan residue either at the seventh position of each of the four calcium-binding loops (i.e., amino acids 26, 62, 99, and 135) or in the central helix (amino acid 81) were studied by using fluorescence spectroscopy. The peptides RS20F and RS20CK correspond to CaM-binding amino acid sequence segments of either nonmuscle myosin light chain kinase (nmMLCK) or calmodulin-dependent protein kinase II (CaMPK-II), respectively. Both steady-state and time-resolved fluorescence data were collected from the various peptide-CaM complexes. Steady-state fluorescence intensity measurements indicated that, in the presence of an excess of calcium, both peptides bind to the calmodulin mutants with a 1:1 stoichiometry. The tryptophans located in loops I and IV exhibited red-shifted emission maxima (356 nm), high quantum yields (0.3), and long average lifetimes (6 ns). They responded in a similar manner to peptide binding, by only slight changes in their fluorescence features. In contrast, the fluorescence intensity of the tryptophans in loops II and III decreased markedly, and their fluorescence spectrum was blue-shifted upon peptide binding. Analysis of the tryptophan fluorescence decay of the last mentioned calmodulins supports a model in which the equilibrium between two (Trp-99) or three (Trp-62) states of these tryptophan residues, each characterized by a different lifetime, was altered toward the blue-shifted short lifetime component upon peptide binding. Taken together, these data provide new evidence that both lobes of calmodulin are involved in peptide binding. Both peptides induced similar changes in the fluorescence properties of the tryptophan residues located in the calcium-binding loops, with the exception of calmodulin with Trp-135. For this last mentioned calmodulin, slight differences were observed. Tryptophan in the central helix responded differently to RS20F and RS20CK binding. RS20F binding induced a red-shift in the emission maximum of Trp-81 while RS20CK induced a blue-shift. The quenching rate of Trp-81 by iodide was slightly reduced upon RS20CK binding, while RS20F induced a 2-fold increase. These results provide evidence that the environment of Trp-81 is different in each case and are, therefore, consistent with the hypothesis that the central helix can play a differential role in the recognition of, or response to, CaM-binding structures.
- Published
- 1991
- Full Text
- View/download PDF
47. Trifluoperazine binding to mutant calmodulins.
- Author
-
Massom LR, Lukas TJ, Persechini A, Kretsinger RH, Watterson DM, and Jarrett HW
- Subjects
- Amino Acid Sequence, Animals, Binding Sites, Brain Chemistry, Calmodulin genetics, Molecular Sequence Data, Mutagenesis, Site-Directed, Mutation, Swine, Calmodulin metabolism, Trifluoperazine metabolism
- Abstract
Trifluoperazine (TFP) binding by 14 calmodulins, including 12 produced by site-directed mutagenesis, was determined. While vertebrate calmodulin binds 4.2 +/- 0.2 equiv of TFP, Escherichia coli expressed but unmutated calmodulins bind about 5.0 +/- 0.5 equiv of TFP. The cause for this difference is not known. The E. coli expressed proteins consist of two different series expressed from different calmodulin genes, CaMI and SYNCAM. The wild-type genes code for proteins that differ by nine conservative amino acid substitutions. Both these calmodulins bind 5 equiv of TFP with similar affinities, thus none of these conservative substitutions has any additional effect on TFP binding. Some altered calmodulins (deletion of EE83-84 or SEEE81-84, changing DEE118-120----KKK, M124----I,E120----K, or E82----K) have no appreciable effect on TFP binding. Other mutations affect either the binding of one TFP (deletion of E84) or about two TFP (changing E84----K, EEE82-84----KKK, E67----A, DEQ6-8----KKK, or E11----K). The mutations that affect TFP binding are localized to three regions of calmodulin: The amino-terminal alpha-helix, the central helix between the two globular ends of calmodulin, and a calcium-binding site in the second calcium-binding domain. The results are consistent with each of these regions either directly participating in drug binding or involved structurally in maintaining or inducing the correct conformation for TFP binding in the amino-terminal half of calmodulin.
- Published
- 1991
- Full Text
- View/download PDF
48. A knowledge-based experimental design system for nucleic acid engineering.
- Author
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Jiang K, Zheng J, Higgins SB, Watterson DM, Craig TA, Lukas TJ, and Van Eldik LJ
- Subjects
- Algorithms, Amino Acid Sequence, Base Sequence, DNA Mutational Analysis, Microcomputers, Molecular Sequence Data, Restriction Mapping, S100 Proteins genetics, Software, User-Computer Interface, Artificial Intelligence, Protein Engineering methods
- Abstract
Presented in this paper is a knowledge-based experimental design system that incorporates the domain expertise used in nucleic acid engineering, thus automating the processing of error-prone, laborious low-level work, and many decision-making steps, and guiding the biologist toward a workable plan. This allows the biologist to work at a higher abstraction level, concentrating on more fundamental, difficult and challenging problems directly related to protein structure - function relationships. Cassette-based site-directed mutagenesis and synthetic gene designs are used as examples to illustrate the utility of the knowledge-based system approach to experimental design.
- Published
- 1990
- Full Text
- View/download PDF
49. Structural characterization of a higher plant calmodulin : spinacia oleracea.
- Author
-
Lukas TJ, Iverson DB, Schleicher M, and Watterson DM
- Abstract
Calmodulin is a eukaryotic calcium binding protein which has several calcium-dependent in vitro activities. Presented in this report is a structural characterization of calmodulin from spinach leaves (Spinacia oleracea). Spinach calmodulin may be representative of higher plant calmodulins in general since calmodulin from the monocotyledon barley (Hordeum vulgare) is indistinguishable by a variety of physical, chemical, and functional criteria (Schleicher, Lukas, Watterson 1983 Plant Physiol 73: 666-670). Spinach calmodulin is homologous to bovine brain calmodulin with only 13 identified amino acid sequence differences, excluding a blocked NH(2)-terminal tripeptide whose sequence has not been elucidated. Two extended regions of sequence identity are in the NH(2)-terminal half of the molecule, while nine of the 13 identified differences are in the COOH-terminal half of the molecule. Two of the changes, a cysteine at residue 26 and a glutamine at residue 96, require a minimum of two base changes in the nucleotide codons. Both of these changes occur in the proposed calcium binding loops of the molecule. Five additional amino acid differences found in spinach calmodulin had not been observed previously in a calmodulin. As described in an accompanying report (Roberts, Burgess, Watterson 1984 Plant Physiol 75: 796-798), these limited number of amino acid sequence variations appear to result in differential effects on the activation of calmodulin-dependent enzymes by plant and vertebrate calmodulins.
- Published
- 1984
- Full Text
- View/download PDF
50. Towards a molecular and atomic anatomy of calmodulin and calmodulin-binding proteins.
- Author
-
Watterson DM, Burgess WH, Lukas TJ, Iverson D, Marshak DR, Schleicher M, Erickson BW, Fok KF, and Van Eldik LJ
- Subjects
- Amino Acid Sequence, Animals, Antigen-Antibody Complex, Brain metabolism, Calmodulin-Binding Proteins, Cattle, Immune Sera, Kinetics, Models, Molecular, Plants metabolism, Protein Conformation, Calmodulin metabolism, Phosphoprotein Phosphatases metabolism
- Abstract
The molecular mechanisms by which calcium regulates cellular processes such as metabolic and mechanochemical events probably involve interactions with a variety of molecules. A large body of evidence suggests that the targets of calcium's regulatory effects inside the cell are calcium-binding proteins. Our work attempts to correlate calcium-binding protein structure with activities. In this chapter we have presented some of our recent studies on these functional domains in calmodulin and calmodulin-binding proteins. Selected chemical modifications of known amino acid sequence positions have demonstrated the presence of multiple functional domains on calmodulin, have allowed the dissociation of calmodulin functions, and have provided the necessary tools for further investigations of the molecular basis of calmodulin action. One of these modifications, iodination of tyrosine-99, has allowed us to develop procedures to reproducibly detect calmodulin-binding proteins by a binding technique. This method is technically simple. It allows us to detect and study calmodulin-binding proteins (e.g., myosin heavy chain and membrane gap junction proteins) that would be difficult to study with immobilized calmodulin. We have developed a library of antibodies to calmodulin and related proteins such as troponin C and S100 beta. Some of these antisera appear to be site-specific gamma globulins. We have demonstrated that reactivity can be contained in an amino acid sequence as short as seven residues. We have demonstrated the feasibility of using an immunochemical mapping approach to study calmodulin and calmodulin-binding proteins. Comparative sequence analyses combined with functional analyses have allowed correlation of function and structure and have suggested logical candidates for functional domains on calmodulin and calmodulin-binding proteins. Although not discussed in detail in this chapter, these calmodulin-binding proteins appear to contain amino acid sequence homologies. This suggests, analogous to the approach used for calmodulin and related proteins, a logical starting point for domain analyses of calmodulin-binding proteins. Interestingly, structural homologies among calmodulin-binding proteins are reminiscent of the different phosphorylation sites found in many of the physiological substrates for protein kinases. Since a number of calmodulin-binding proteins are themselves substrates for protein kinases, these results suggest another possible point of interrelationships between calcium and cyclic nucleotide regulation.
- Published
- 1984
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